Multiple sequence alignment - TraesCS2A01G190300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G190300 chr2A 100.000 3429 0 0 1 3429 156679274 156682702 0.000000e+00 6333
1 TraesCS2A01G190300 chr2A 91.734 617 44 6 1 614 53323528 53324140 0.000000e+00 850
2 TraesCS2A01G190300 chr2A 95.131 267 13 0 2614 2880 625961206 625961472 4.090000e-114 422
3 TraesCS2A01G190300 chr2A 92.248 129 9 1 714 842 718971890 718972017 7.560000e-42 182
4 TraesCS2A01G190300 chr2B 92.891 1266 51 14 858 2093 202905924 202904668 0.000000e+00 1803
5 TraesCS2A01G190300 chr2B 92.382 617 42 3 1 614 795477211 795477825 0.000000e+00 874
6 TraesCS2A01G190300 chr2B 96.045 354 13 1 2155 2508 202904669 202904317 2.970000e-160 575
7 TraesCS2A01G190300 chr2B 90.210 143 13 1 701 842 396725400 396725542 5.840000e-43 185
8 TraesCS2A01G190300 chr2B 91.463 82 6 1 629 709 202906187 202906106 1.010000e-20 111
9 TraesCS2A01G190300 chr2B 90.123 81 5 1 2544 2621 202904244 202904164 6.050000e-18 102
10 TraesCS2A01G190300 chr6D 92.382 617 37 6 1 614 60456823 60456214 0.000000e+00 870
11 TraesCS2A01G190300 chr6D 91.948 621 43 4 1 614 61767335 61766715 0.000000e+00 863
12 TraesCS2A01G190300 chr6D 93.496 123 8 0 714 836 345490303 345490425 2.100000e-42 183
13 TraesCS2A01G190300 chr7B 91.693 626 38 9 1 620 416442534 416443151 0.000000e+00 856
14 TraesCS2A01G190300 chr6B 92.058 617 34 8 1 614 230768789 230769393 0.000000e+00 854
15 TraesCS2A01G190300 chr6A 91.734 617 43 6 1 614 12373903 12373292 0.000000e+00 850
16 TraesCS2A01G190300 chr6A 94.465 271 15 0 2614 2884 439231077 439230807 5.290000e-113 418
17 TraesCS2A01G190300 chrUn 91.896 617 34 11 1 614 48575587 48576190 0.000000e+00 848
18 TraesCS2A01G190300 chr5B 90.439 638 51 7 1 632 454091835 454092468 0.000000e+00 832
19 TraesCS2A01G190300 chr2D 90.635 598 17 6 2060 2620 145338039 145337444 0.000000e+00 758
20 TraesCS2A01G190300 chr2D 94.565 276 14 1 2877 3151 145337446 145337171 3.160000e-115 425
21 TraesCS2A01G190300 chr5A 95.506 267 10 2 2616 2881 126624823 126625088 3.160000e-115 425
22 TraesCS2A01G190300 chr5A 94.355 124 7 0 714 837 577784191 577784068 1.260000e-44 191
23 TraesCS2A01G190300 chr7A 95.472 265 12 0 2614 2878 101271797 101272061 1.140000e-114 424
24 TraesCS2A01G190300 chr7A 95.785 261 11 0 2618 2878 506291323 506291583 4.090000e-114 422
25 TraesCS2A01G190300 chr7A 93.496 123 8 0 714 836 466311144 466311266 2.100000e-42 183
26 TraesCS2A01G190300 chr7A 89.928 139 14 0 708 846 287176658 287176520 2.720000e-41 180
27 TraesCS2A01G190300 chr3A 95.489 266 11 1 2618 2882 741483457 741483192 1.140000e-114 424
28 TraesCS2A01G190300 chr3A 95.489 266 11 1 2618 2882 741557377 741557112 1.140000e-114 424
29 TraesCS2A01G190300 chr3A 95.437 263 12 0 2617 2879 522717636 522717898 1.470000e-113 420
30 TraesCS2A01G190300 chr3B 95.113 266 13 0 2617 2882 427097070 427096805 1.470000e-113 420
31 TraesCS2A01G190300 chr4A 91.608 143 11 1 705 846 175649005 175649147 2.700000e-46 196
32 TraesCS2A01G190300 chr4A 94.262 122 7 0 714 835 178478747 178478868 1.620000e-43 187
33 TraesCS2A01G190300 chr3D 93.496 123 8 0 714 836 359257840 359257718 2.100000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G190300 chr2A 156679274 156682702 3428 False 6333.00 6333 100.0000 1 3429 1 chr2A.!!$F2 3428
1 TraesCS2A01G190300 chr2A 53323528 53324140 612 False 850.00 850 91.7340 1 614 1 chr2A.!!$F1 613
2 TraesCS2A01G190300 chr2B 795477211 795477825 614 False 874.00 874 92.3820 1 614 1 chr2B.!!$F2 613
3 TraesCS2A01G190300 chr2B 202904164 202906187 2023 True 647.75 1803 92.6305 629 2621 4 chr2B.!!$R1 1992
4 TraesCS2A01G190300 chr6D 60456214 60456823 609 True 870.00 870 92.3820 1 614 1 chr6D.!!$R1 613
5 TraesCS2A01G190300 chr6D 61766715 61767335 620 True 863.00 863 91.9480 1 614 1 chr6D.!!$R2 613
6 TraesCS2A01G190300 chr7B 416442534 416443151 617 False 856.00 856 91.6930 1 620 1 chr7B.!!$F1 619
7 TraesCS2A01G190300 chr6B 230768789 230769393 604 False 854.00 854 92.0580 1 614 1 chr6B.!!$F1 613
8 TraesCS2A01G190300 chr6A 12373292 12373903 611 True 850.00 850 91.7340 1 614 1 chr6A.!!$R1 613
9 TraesCS2A01G190300 chrUn 48575587 48576190 603 False 848.00 848 91.8960 1 614 1 chrUn.!!$F1 613
10 TraesCS2A01G190300 chr5B 454091835 454092468 633 False 832.00 832 90.4390 1 632 1 chr5B.!!$F1 631
11 TraesCS2A01G190300 chr2D 145337171 145338039 868 True 591.50 758 92.6000 2060 3151 2 chr2D.!!$R1 1091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1028 0.027586 GCCGTGCGTACCATTCATTC 59.972 55.0 0.00 0.0 0.00 2.67 F
1992 2062 0.996462 CGCGCTTTTCGTCCTATCAA 59.004 50.0 5.56 0.0 41.07 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2198 0.318955 GCAGCAGCGAATTTGTTGGT 60.319 50.0 8.29 8.29 0.00 3.67 R
3191 3376 0.033894 GGGAGAGGAGACCGACTCTT 60.034 60.0 0.00 2.55 43.71 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 169 9.796120 AAGCAAACTTATAATTTATAGCGCAAA 57.204 25.926 11.47 1.09 33.13 3.68
197 202 0.828022 TTTCATACCGGCGGTGATCT 59.172 50.000 39.80 19.34 36.19 2.75
217 222 7.067494 GTGATCTAGATTGCAAATAAACACCCT 59.933 37.037 6.70 0.00 0.00 4.34
271 276 7.124573 TGATAACTACACATGCATACCTCTT 57.875 36.000 0.00 0.00 0.00 2.85
295 300 1.923356 ATGTCGCAGGGGAAAACAAT 58.077 45.000 0.00 0.00 0.00 2.71
345 354 2.748605 CGAGAGAGAGAGAGAGAGAGC 58.251 57.143 0.00 0.00 0.00 4.09
355 364 1.555075 AGAGAGAGAGCGAGAGAGTGT 59.445 52.381 0.00 0.00 0.00 3.55
406 425 1.285373 AGGGAGAGAGAGACGCCTTAA 59.715 52.381 0.00 0.00 0.00 1.85
498 519 1.009829 GAGGATAAGCGGCAACACAG 58.990 55.000 1.45 0.00 0.00 3.66
522 543 7.648908 CAGATATGATGCCTCGCAAAAATAAAA 59.351 33.333 0.00 0.00 43.62 1.52
568 589 8.740123 TTAAGTGATGGTTGTTGAGTTAAGAA 57.260 30.769 0.00 0.00 0.00 2.52
614 635 1.064060 GCAACGCACAGACTCTTTTGT 59.936 47.619 0.00 0.00 0.00 2.83
616 637 3.100817 CAACGCACAGACTCTTTTGTTG 58.899 45.455 0.00 0.00 0.00 3.33
617 638 2.356135 ACGCACAGACTCTTTTGTTGT 58.644 42.857 0.00 0.00 0.00 3.32
619 640 3.936453 ACGCACAGACTCTTTTGTTGTTA 59.064 39.130 0.00 0.00 0.00 2.41
620 641 4.201783 ACGCACAGACTCTTTTGTTGTTAC 60.202 41.667 0.00 0.00 0.00 2.50
624 645 6.251376 GCACAGACTCTTTTGTTGTTACTTTG 59.749 38.462 0.00 0.00 0.00 2.77
668 689 1.072173 CCCATTCCTGCATGTCGGATA 59.928 52.381 6.04 0.00 0.00 2.59
671 692 0.829990 TTCCTGCATGTCGGATAGCA 59.170 50.000 6.04 0.00 35.43 3.49
709 730 0.871722 CGTCCCTCGCATGAACAAAA 59.128 50.000 0.00 0.00 0.00 2.44
711 732 1.606668 GTCCCTCGCATGAACAAAACA 59.393 47.619 0.00 0.00 0.00 2.83
712 733 1.606668 TCCCTCGCATGAACAAAACAC 59.393 47.619 0.00 0.00 0.00 3.32
713 734 1.662876 CCCTCGCATGAACAAAACACG 60.663 52.381 0.00 0.00 0.00 4.49
714 735 1.662876 CCTCGCATGAACAAAACACGG 60.663 52.381 0.00 0.00 0.00 4.94
717 738 1.394697 GCATGAACAAAACACGGACG 58.605 50.000 0.00 0.00 0.00 4.79
718 739 1.394697 CATGAACAAAACACGGACGC 58.605 50.000 0.00 0.00 0.00 5.19
719 740 1.018148 ATGAACAAAACACGGACGCA 58.982 45.000 0.00 0.00 0.00 5.24
720 741 0.375454 TGAACAAAACACGGACGCAG 59.625 50.000 0.00 0.00 0.00 5.18
722 743 1.373590 AACAAAACACGGACGCAGCT 61.374 50.000 0.00 0.00 0.00 4.24
724 745 0.657368 CAAAACACGGACGCAGCTTC 60.657 55.000 0.00 0.00 0.00 3.86
725 746 2.101209 AAAACACGGACGCAGCTTCG 62.101 55.000 3.63 3.63 0.00 3.79
739 760 1.071699 AGCTTCGGTGCCTTAAAGACA 59.928 47.619 0.00 0.00 0.00 3.41
740 761 1.197036 GCTTCGGTGCCTTAAAGACAC 59.803 52.381 0.00 0.00 0.00 3.67
745 766 0.881796 GTGCCTTAAAGACACCTGCC 59.118 55.000 0.00 0.00 0.00 4.85
747 768 1.144913 TGCCTTAAAGACACCTGCCTT 59.855 47.619 0.00 0.00 0.00 4.35
748 769 2.239400 GCCTTAAAGACACCTGCCTTT 58.761 47.619 0.00 0.00 36.64 3.11
750 771 2.558359 CCTTAAAGACACCTGCCTTTGG 59.442 50.000 0.00 0.00 34.74 3.28
751 772 2.286365 TAAAGACACCTGCCTTTGGG 57.714 50.000 0.00 0.00 34.74 4.12
752 773 0.261696 AAAGACACCTGCCTTTGGGT 59.738 50.000 0.00 0.00 36.07 4.51
754 775 1.150536 GACACCTGCCTTTGGGTCA 59.849 57.895 0.00 0.00 32.95 4.02
755 776 1.152756 ACACCTGCCTTTGGGTCAC 60.153 57.895 0.00 0.00 32.95 3.67
756 777 1.151450 CACCTGCCTTTGGGTCACT 59.849 57.895 0.00 0.00 32.95 3.41
757 778 1.151450 ACCTGCCTTTGGGTCACTG 59.849 57.895 0.00 0.00 34.45 3.66
758 779 1.352622 ACCTGCCTTTGGGTCACTGA 61.353 55.000 0.00 0.00 34.45 3.41
759 780 0.890996 CCTGCCTTTGGGTCACTGAC 60.891 60.000 0.00 0.00 34.45 3.51
761 782 0.478072 TGCCTTTGGGTCACTGACAT 59.522 50.000 11.34 0.00 33.68 3.06
762 783 0.883833 GCCTTTGGGTCACTGACATG 59.116 55.000 11.34 0.00 33.68 3.21
763 784 1.819305 GCCTTTGGGTCACTGACATGT 60.819 52.381 11.34 0.00 33.68 3.21
764 785 1.881973 CCTTTGGGTCACTGACATGTG 59.118 52.381 1.15 0.00 39.15 3.21
765 786 1.881973 CTTTGGGTCACTGACATGTGG 59.118 52.381 1.15 0.00 38.40 4.17
766 787 0.110295 TTGGGTCACTGACATGTGGG 59.890 55.000 1.15 0.00 38.40 4.61
770 791 1.406069 GGTCACTGACATGTGGGCTAG 60.406 57.143 1.15 0.00 38.40 3.42
772 793 0.745845 CACTGACATGTGGGCTAGCC 60.746 60.000 26.55 26.55 34.56 3.93
773 794 1.200760 ACTGACATGTGGGCTAGCCA 61.201 55.000 34.09 18.02 37.98 4.75
776 797 1.915078 GACATGTGGGCTAGCCACCT 61.915 60.000 34.09 19.31 37.38 4.00
777 798 1.452651 CATGTGGGCTAGCCACCTG 60.453 63.158 34.09 25.09 37.38 4.00
778 799 1.925455 ATGTGGGCTAGCCACCTGT 60.925 57.895 34.09 13.52 37.38 4.00
779 800 1.500783 ATGTGGGCTAGCCACCTGTT 61.501 55.000 34.09 11.37 37.38 3.16
780 801 1.675641 GTGGGCTAGCCACCTGTTG 60.676 63.158 34.09 0.00 37.98 3.33
784 805 0.464554 GGCTAGCCACCTGTTGGATC 60.465 60.000 29.33 0.00 41.65 3.36
785 806 0.464554 GCTAGCCACCTGTTGGATCC 60.465 60.000 4.20 4.20 41.65 3.36
786 807 0.911769 CTAGCCACCTGTTGGATCCA 59.088 55.000 11.44 11.44 41.65 3.41
787 808 1.492176 CTAGCCACCTGTTGGATCCAT 59.508 52.381 17.06 0.00 41.65 3.41
789 810 2.138542 AGCCACCTGTTGGATCCATAT 58.861 47.619 17.06 0.00 41.65 1.78
790 811 2.158564 AGCCACCTGTTGGATCCATATG 60.159 50.000 17.06 9.46 41.65 1.78
791 812 4.724619 AGCCACCTGTTGGATCCATATGT 61.725 47.826 17.06 8.33 41.65 2.29
792 813 6.513130 AGCCACCTGTTGGATCCATATGTC 62.513 50.000 17.06 5.00 41.65 3.06
793 814 4.155063 CACCTGTTGGATCCATATGTCA 57.845 45.455 17.06 9.20 37.04 3.58
794 815 4.722220 CACCTGTTGGATCCATATGTCAT 58.278 43.478 17.06 0.00 37.04 3.06
795 816 5.868454 CACCTGTTGGATCCATATGTCATA 58.132 41.667 17.06 0.00 37.04 2.15
797 818 5.846164 ACCTGTTGGATCCATATGTCATAGA 59.154 40.000 17.06 0.00 37.04 1.98
798 819 6.169094 CCTGTTGGATCCATATGTCATAGAC 58.831 44.000 17.06 7.11 34.57 2.59
799 820 6.239686 CCTGTTGGATCCATATGTCATAGACA 60.240 42.308 17.06 11.56 40.46 3.41
800 821 7.528374 CCTGTTGGATCCATATGTCATAGACAT 60.528 40.741 17.06 15.94 44.67 3.06
824 845 3.382048 GGTAGATACCTTAAGGCACCG 57.618 52.381 21.92 0.00 43.10 4.94
825 846 2.961062 GGTAGATACCTTAAGGCACCGA 59.039 50.000 21.92 4.06 43.10 4.69
826 847 3.385755 GGTAGATACCTTAAGGCACCGAA 59.614 47.826 21.92 0.18 43.10 4.30
827 848 3.821421 AGATACCTTAAGGCACCGAAG 57.179 47.619 21.92 0.00 39.32 3.79
828 849 2.158943 AGATACCTTAAGGCACCGAAGC 60.159 50.000 21.92 3.38 39.32 3.86
829 850 0.978151 TACCTTAAGGCACCGAAGCA 59.022 50.000 21.92 0.00 39.32 3.91
830 851 0.328258 ACCTTAAGGCACCGAAGCAT 59.672 50.000 21.92 0.00 39.32 3.79
832 853 5.837767 TACCTTAAGGCACCGAAGCATCG 62.838 52.174 21.92 3.96 43.31 3.84
843 864 1.262950 CGAAGCATCGTCCACAAAACA 59.737 47.619 2.58 0.00 44.06 2.83
844 865 2.650608 GAAGCATCGTCCACAAAACAC 58.349 47.619 0.00 0.00 0.00 3.32
845 866 1.674359 AGCATCGTCCACAAAACACA 58.326 45.000 0.00 0.00 0.00 3.72
847 868 2.622942 AGCATCGTCCACAAAACACATT 59.377 40.909 0.00 0.00 0.00 2.71
848 869 3.068024 AGCATCGTCCACAAAACACATTT 59.932 39.130 0.00 0.00 0.00 2.32
849 870 3.425193 GCATCGTCCACAAAACACATTTC 59.575 43.478 0.00 0.00 0.00 2.17
851 872 4.545823 TCGTCCACAAAACACATTTCTC 57.454 40.909 0.00 0.00 0.00 2.87
852 873 4.196193 TCGTCCACAAAACACATTTCTCT 58.804 39.130 0.00 0.00 0.00 3.10
853 874 4.638421 TCGTCCACAAAACACATTTCTCTT 59.362 37.500 0.00 0.00 0.00 2.85
854 875 5.124776 TCGTCCACAAAACACATTTCTCTTT 59.875 36.000 0.00 0.00 0.00 2.52
855 876 5.455525 CGTCCACAAAACACATTTCTCTTTC 59.544 40.000 0.00 0.00 0.00 2.62
856 877 6.329496 GTCCACAAAACACATTTCTCTTTCA 58.671 36.000 0.00 0.00 0.00 2.69
949 1014 0.647410 CTCGCACTATCAAAGCCGTG 59.353 55.000 0.00 0.00 0.00 4.94
960 1025 0.604243 AAAGCCGTGCGTACCATTCA 60.604 50.000 0.00 0.00 0.00 2.57
962 1027 0.392461 AGCCGTGCGTACCATTCATT 60.392 50.000 0.00 0.00 0.00 2.57
963 1028 0.027586 GCCGTGCGTACCATTCATTC 59.972 55.000 0.00 0.00 0.00 2.67
967 1032 2.930040 CGTGCGTACCATTCATTCTTCT 59.070 45.455 0.00 0.00 0.00 2.85
968 1033 3.370978 CGTGCGTACCATTCATTCTTCTT 59.629 43.478 0.00 0.00 0.00 2.52
969 1034 4.142902 CGTGCGTACCATTCATTCTTCTTT 60.143 41.667 0.00 0.00 0.00 2.52
970 1035 5.324697 GTGCGTACCATTCATTCTTCTTTC 58.675 41.667 0.00 0.00 0.00 2.62
971 1036 4.394920 TGCGTACCATTCATTCTTCTTTCC 59.605 41.667 0.00 0.00 0.00 3.13
972 1037 4.494199 GCGTACCATTCATTCTTCTTTCCG 60.494 45.833 0.00 0.00 0.00 4.30
1054 1122 2.278596 CCACCATAGTCGTCGCCG 60.279 66.667 0.00 0.00 0.00 6.46
1073 1141 2.033141 CTCACTGCCACCACCCAG 59.967 66.667 0.00 0.00 35.26 4.45
1306 1374 2.340809 CGGTGTTCGCCTACCACA 59.659 61.111 0.95 0.00 36.76 4.17
1357 1425 2.276493 CGGTCGTCGACAGCTACG 60.276 66.667 25.64 15.71 42.43 3.51
1362 1430 4.509737 GTCGACAGCTACGCCCCC 62.510 72.222 11.55 0.00 0.00 5.40
1446 1514 3.696676 TACGCCATCCACGCCACA 61.697 61.111 0.00 0.00 0.00 4.17
1563 1631 2.431942 AACGTCATGTCGTCCCGC 60.432 61.111 17.95 0.00 43.38 6.13
1691 1759 2.352421 CGTACGACAGTTTGGATCACCT 60.352 50.000 10.44 0.00 37.04 4.00
1693 1761 3.208747 ACGACAGTTTGGATCACCTTT 57.791 42.857 0.00 0.00 37.04 3.11
1695 1763 3.564225 ACGACAGTTTGGATCACCTTTTC 59.436 43.478 0.00 0.00 37.04 2.29
1724 1794 7.504238 TGATTTTTCACTTGGGAAACTTAGCTA 59.496 33.333 0.00 0.00 36.56 3.32
1763 1833 2.412323 CCATGGCGTGCTGAATGCT 61.412 57.895 0.00 0.00 43.37 3.79
1868 1938 4.680237 CTCCACGTCGCCTGCCAA 62.680 66.667 0.00 0.00 0.00 4.52
1884 1954 2.819595 AATGCAGCGGCTACGTGG 60.820 61.111 10.92 0.00 43.45 4.94
1992 2062 0.996462 CGCGCTTTTCGTCCTATCAA 59.004 50.000 5.56 0.00 41.07 2.57
1994 2064 1.266891 GCGCTTTTCGTCCTATCAACG 60.267 52.381 0.00 0.00 41.07 4.10
2007 2077 2.550830 ATCAACGCTTCAGGTCAGTT 57.449 45.000 0.00 0.00 0.00 3.16
2010 2080 1.528586 CAACGCTTCAGGTCAGTTCTG 59.471 52.381 0.00 0.00 0.00 3.02
2012 2082 1.143305 CGCTTCAGGTCAGTTCTGTG 58.857 55.000 0.00 0.00 34.15 3.66
2017 2087 2.771089 TCAGGTCAGTTCTGTGCAATC 58.229 47.619 0.00 0.00 34.15 2.67
2033 2103 3.565482 TGCAATCTGTTCAGTTCAGTTCC 59.435 43.478 0.00 0.00 34.86 3.62
2044 2115 6.174720 TCAGTTCAGTTCCACTCTTTACAT 57.825 37.500 0.00 0.00 0.00 2.29
2045 2116 6.591935 TCAGTTCAGTTCCACTCTTTACATT 58.408 36.000 0.00 0.00 0.00 2.71
2046 2117 7.732025 TCAGTTCAGTTCCACTCTTTACATTA 58.268 34.615 0.00 0.00 0.00 1.90
2047 2118 7.656137 TCAGTTCAGTTCCACTCTTTACATTAC 59.344 37.037 0.00 0.00 0.00 1.89
2048 2119 7.441157 CAGTTCAGTTCCACTCTTTACATTACA 59.559 37.037 0.00 0.00 0.00 2.41
2049 2120 7.657761 AGTTCAGTTCCACTCTTTACATTACAG 59.342 37.037 0.00 0.00 0.00 2.74
2050 2121 7.297936 TCAGTTCCACTCTTTACATTACAGA 57.702 36.000 0.00 0.00 0.00 3.41
2051 2122 7.907389 TCAGTTCCACTCTTTACATTACAGAT 58.093 34.615 0.00 0.00 0.00 2.90
2052 2123 7.819415 TCAGTTCCACTCTTTACATTACAGATG 59.181 37.037 0.00 0.00 0.00 2.90
2054 2125 5.989477 TCCACTCTTTACATTACAGATGGG 58.011 41.667 0.00 0.00 0.00 4.00
2055 2126 4.576463 CCACTCTTTACATTACAGATGGGC 59.424 45.833 0.00 0.00 0.00 5.36
2056 2127 5.185454 CACTCTTTACATTACAGATGGGCA 58.815 41.667 0.00 0.00 0.00 5.36
2091 2175 7.665561 TTTGTCGATGAACAATCTTCACATA 57.334 32.000 0.00 0.00 38.83 2.29
2092 2176 7.848223 TTGTCGATGAACAATCTTCACATAT 57.152 32.000 0.00 0.00 34.31 1.78
2093 2177 7.848223 TGTCGATGAACAATCTTCACATATT 57.152 32.000 0.00 0.00 32.61 1.28
2094 2178 8.267620 TGTCGATGAACAATCTTCACATATTT 57.732 30.769 0.00 0.00 32.61 1.40
2095 2179 8.177013 TGTCGATGAACAATCTTCACATATTTG 58.823 33.333 0.00 0.00 32.61 2.32
2096 2180 8.390354 GTCGATGAACAATCTTCACATATTTGA 58.610 33.333 0.00 0.00 32.61 2.69
2097 2181 9.112725 TCGATGAACAATCTTCACATATTTGAT 57.887 29.630 0.00 0.00 32.61 2.57
2120 2204 9.616156 TGATACTTTTAACTACTTTGACCAACA 57.384 29.630 0.00 0.00 0.00 3.33
2126 2210 8.844441 TTTAACTACTTTGACCAACAAATTCG 57.156 30.769 0.00 0.00 45.63 3.34
2127 2211 4.855531 ACTACTTTGACCAACAAATTCGC 58.144 39.130 0.00 0.00 45.63 4.70
2128 2212 4.578928 ACTACTTTGACCAACAAATTCGCT 59.421 37.500 0.00 0.00 45.63 4.93
2129 2213 3.705604 ACTTTGACCAACAAATTCGCTG 58.294 40.909 0.00 0.00 45.63 5.18
2130 2214 2.132740 TTGACCAACAAATTCGCTGC 57.867 45.000 0.00 0.00 35.39 5.25
2131 2215 1.317613 TGACCAACAAATTCGCTGCT 58.682 45.000 0.00 0.00 0.00 4.24
2132 2216 1.001487 TGACCAACAAATTCGCTGCTG 60.001 47.619 0.00 0.00 0.00 4.41
2133 2217 0.318955 ACCAACAAATTCGCTGCTGC 60.319 50.000 5.34 5.34 0.00 5.25
2134 2218 0.038892 CCAACAAATTCGCTGCTGCT 60.039 50.000 14.03 0.00 36.97 4.24
2135 2219 1.603678 CCAACAAATTCGCTGCTGCTT 60.604 47.619 14.03 0.00 36.97 3.91
2136 2220 2.129607 CAACAAATTCGCTGCTGCTTT 58.870 42.857 14.03 4.85 36.97 3.51
2137 2221 2.056094 ACAAATTCGCTGCTGCTTTC 57.944 45.000 14.03 0.00 36.97 2.62
2138 2222 1.610522 ACAAATTCGCTGCTGCTTTCT 59.389 42.857 14.03 0.00 36.97 2.52
2139 2223 2.813754 ACAAATTCGCTGCTGCTTTCTA 59.186 40.909 14.03 0.00 36.97 2.10
2140 2224 3.166657 CAAATTCGCTGCTGCTTTCTAC 58.833 45.455 14.03 0.00 36.97 2.59
2141 2225 1.002366 ATTCGCTGCTGCTTTCTACG 58.998 50.000 14.03 0.00 36.97 3.51
2142 2226 1.014044 TTCGCTGCTGCTTTCTACGG 61.014 55.000 14.03 0.00 36.97 4.02
2143 2227 1.446099 CGCTGCTGCTTTCTACGGA 60.446 57.895 14.03 0.00 36.97 4.69
2144 2228 1.416813 CGCTGCTGCTTTCTACGGAG 61.417 60.000 14.03 0.00 36.97 4.63
2145 2229 0.390472 GCTGCTGCTTTCTACGGAGT 60.390 55.000 8.53 0.00 39.75 3.85
2146 2230 1.135083 GCTGCTGCTTTCTACGGAGTA 60.135 52.381 8.53 0.00 37.96 2.59
2147 2231 2.482142 GCTGCTGCTTTCTACGGAGTAT 60.482 50.000 8.53 0.00 38.19 2.12
2148 2232 3.243434 GCTGCTGCTTTCTACGGAGTATA 60.243 47.826 8.53 0.00 38.19 1.47
2149 2233 4.559704 GCTGCTGCTTTCTACGGAGTATAT 60.560 45.833 8.53 0.00 38.19 0.86
2150 2234 5.335740 GCTGCTGCTTTCTACGGAGTATATA 60.336 44.000 8.53 0.00 38.19 0.86
2151 2235 6.626181 GCTGCTGCTTTCTACGGAGTATATAT 60.626 42.308 8.53 0.00 38.19 0.86
2152 2236 7.415318 GCTGCTGCTTTCTACGGAGTATATATA 60.415 40.741 8.53 0.00 38.19 0.86
2153 2237 7.759465 TGCTGCTTTCTACGGAGTATATATAC 58.241 38.462 14.05 14.05 44.56 1.47
2311 2456 2.191513 CAAGGGCATCGGCATCCTG 61.192 63.158 0.00 0.00 43.71 3.86
2331 2476 3.593096 TGCAAGCTGATCAGAAGTACAG 58.407 45.455 27.04 8.80 0.00 2.74
2362 2507 2.046009 TTGGTGCCGTTCTGGTGCTA 62.046 55.000 0.00 0.00 41.21 3.49
2479 2624 1.221414 GGCTTATCTGCGTGGACATC 58.779 55.000 0.00 0.00 0.00 3.06
2621 2806 7.042321 TGACAGTTTTGACCGAAGTTTATACTG 60.042 37.037 0.00 0.00 34.01 2.74
2622 2807 6.077838 CAGTTTTGACCGAAGTTTATACTGC 58.922 40.000 0.00 0.00 34.01 4.40
2623 2808 5.995897 AGTTTTGACCGAAGTTTATACTGCT 59.004 36.000 0.00 0.00 34.01 4.24
2624 2809 6.485648 AGTTTTGACCGAAGTTTATACTGCTT 59.514 34.615 0.00 0.00 34.01 3.91
2625 2810 6.476243 TTTGACCGAAGTTTATACTGCTTC 57.524 37.500 0.00 0.00 34.01 3.86
2626 2811 5.401531 TGACCGAAGTTTATACTGCTTCT 57.598 39.130 0.00 0.00 37.17 2.85
2627 2812 5.168569 TGACCGAAGTTTATACTGCTTCTG 58.831 41.667 0.00 0.00 37.17 3.02
2628 2813 5.148651 ACCGAAGTTTATACTGCTTCTGT 57.851 39.130 0.00 0.00 37.17 3.41
2629 2814 5.548406 ACCGAAGTTTATACTGCTTCTGTT 58.452 37.500 0.00 0.00 34.60 3.16
2630 2815 5.995897 ACCGAAGTTTATACTGCTTCTGTTT 59.004 36.000 0.00 0.00 34.60 2.83
2631 2816 6.485648 ACCGAAGTTTATACTGCTTCTGTTTT 59.514 34.615 0.00 0.00 34.60 2.43
2632 2817 7.012989 ACCGAAGTTTATACTGCTTCTGTTTTT 59.987 33.333 0.00 0.00 34.60 1.94
2633 2818 8.500773 CCGAAGTTTATACTGCTTCTGTTTTTA 58.499 33.333 0.00 0.00 37.17 1.52
2643 2828 7.363431 ACTGCTTCTGTTTTTATTTACTCTGC 58.637 34.615 0.00 0.00 0.00 4.26
2644 2829 7.013274 ACTGCTTCTGTTTTTATTTACTCTGCA 59.987 33.333 0.00 0.00 0.00 4.41
2645 2830 7.885297 TGCTTCTGTTTTTATTTACTCTGCAT 58.115 30.769 0.00 0.00 0.00 3.96
2646 2831 9.008965 TGCTTCTGTTTTTATTTACTCTGCATA 57.991 29.630 0.00 0.00 0.00 3.14
2662 2847 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
2663 2848 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
2664 2849 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
2744 2929 8.887036 ATAAATCTATACGATGTGAAAGTGCA 57.113 30.769 0.00 0.00 31.20 4.57
2745 2930 7.792374 AAATCTATACGATGTGAAAGTGCAT 57.208 32.000 0.00 0.00 31.20 3.96
2746 2931 7.792374 AATCTATACGATGTGAAAGTGCATT 57.208 32.000 0.00 0.00 31.20 3.56
2747 2932 7.792374 ATCTATACGATGTGAAAGTGCATTT 57.208 32.000 0.00 0.00 0.00 2.32
2748 2933 8.887036 ATCTATACGATGTGAAAGTGCATTTA 57.113 30.769 0.00 0.00 0.00 1.40
2749 2934 8.710835 TCTATACGATGTGAAAGTGCATTTAA 57.289 30.769 0.00 0.00 0.00 1.52
2750 2935 9.325198 TCTATACGATGTGAAAGTGCATTTAAT 57.675 29.630 0.00 0.00 0.00 1.40
2840 3025 7.771183 AAGTTTGTAAAGCTTGACTTTGATCA 58.229 30.769 15.19 0.00 45.94 2.92
2841 3026 8.250332 AAGTTTGTAAAGCTTGACTTTGATCAA 58.750 29.630 15.19 3.38 45.94 2.57
2856 3041 7.600467 CTTTGATCAAAGCTAATATGCGAAC 57.400 36.000 29.90 0.00 40.94 3.95
2857 3042 6.925610 TTGATCAAAGCTAATATGCGAACT 57.074 33.333 5.45 0.00 38.13 3.01
2858 3043 8.432110 TTTGATCAAAGCTAATATGCGAACTA 57.568 30.769 16.91 0.00 38.13 2.24
2859 3044 8.432110 TTGATCAAAGCTAATATGCGAACTAA 57.568 30.769 5.45 0.00 38.13 2.24
2860 3045 8.432110 TGATCAAAGCTAATATGCGAACTAAA 57.568 30.769 0.00 0.00 38.13 1.85
2861 3046 9.056005 TGATCAAAGCTAATATGCGAACTAAAT 57.944 29.630 0.00 0.00 38.13 1.40
2868 3053 9.646336 AGCTAATATGCGAACTAAATAAAAACG 57.354 29.630 0.00 0.00 38.13 3.60
2869 3054 8.889000 GCTAATATGCGAACTAAATAAAAACGG 58.111 33.333 0.00 0.00 0.00 4.44
2872 3057 6.730960 ATGCGAACTAAATAAAAACGGAGA 57.269 33.333 0.00 0.00 0.00 3.71
2873 3058 6.160664 TGCGAACTAAATAAAAACGGAGAG 57.839 37.500 0.00 0.00 0.00 3.20
2874 3059 5.927689 TGCGAACTAAATAAAAACGGAGAGA 59.072 36.000 0.00 0.00 0.00 3.10
2875 3060 6.090358 TGCGAACTAAATAAAAACGGAGAGAG 59.910 38.462 0.00 0.00 0.00 3.20
2876 3061 6.090493 GCGAACTAAATAAAAACGGAGAGAGT 59.910 38.462 0.00 0.00 0.00 3.24
2877 3062 7.274250 GCGAACTAAATAAAAACGGAGAGAGTA 59.726 37.037 0.00 0.00 0.00 2.59
2878 3063 8.582096 CGAACTAAATAAAAACGGAGAGAGTAC 58.418 37.037 0.00 0.00 0.00 2.73
2886 3071 6.585695 AAAACGGAGAGAGTACAACATAGA 57.414 37.500 0.00 0.00 0.00 1.98
2936 3121 1.227704 CGGGGCTGTTGTGTGTGTA 60.228 57.895 0.00 0.00 0.00 2.90
2994 3179 3.025322 TCATGTTGGGTGTCTTTTGGT 57.975 42.857 0.00 0.00 0.00 3.67
2998 3183 0.457851 TTGGGTGTCTTTTGGTTGCG 59.542 50.000 0.00 0.00 0.00 4.85
3019 3204 1.034292 GCAGAACCTCCAATCAGGCC 61.034 60.000 0.00 0.00 36.98 5.19
3075 3260 4.704540 ACAAATTTGACTTCCATCGGCATA 59.295 37.500 24.64 0.00 0.00 3.14
3090 3275 3.756434 TCGGCATAAACTTTAAAGCAGCT 59.244 39.130 15.24 0.00 0.00 4.24
3097 3282 7.588512 CATAAACTTTAAAGCAGCTCAGAGTT 58.411 34.615 15.24 1.21 0.00 3.01
3101 3286 2.645838 AAAGCAGCTCAGAGTTTGGA 57.354 45.000 0.00 0.00 0.00 3.53
3109 3294 2.932622 GCTCAGAGTTTGGATCGCTGAA 60.933 50.000 0.00 0.00 40.11 3.02
3115 3300 3.744660 AGTTTGGATCGCTGAAAACTCT 58.255 40.909 0.00 0.00 38.19 3.24
3143 3328 1.968540 AGTTTCCAGCGAGCCAAGC 60.969 57.895 0.00 0.00 0.00 4.01
3144 3329 3.049674 TTTCCAGCGAGCCAAGCG 61.050 61.111 0.00 0.00 40.04 4.68
3145 3330 3.529341 TTTCCAGCGAGCCAAGCGA 62.529 57.895 0.00 0.00 40.04 4.93
3146 3331 3.939837 TTCCAGCGAGCCAAGCGAG 62.940 63.158 0.00 0.00 40.04 5.03
3147 3332 4.749310 CCAGCGAGCCAAGCGAGT 62.749 66.667 0.00 0.00 40.04 4.18
3148 3333 3.485431 CAGCGAGCCAAGCGAGTG 61.485 66.667 0.00 0.00 40.04 3.51
3161 3346 3.044305 GAGTGCGGCGCAAGAGTT 61.044 61.111 38.05 19.19 41.47 3.01
3162 3347 3.016474 GAGTGCGGCGCAAGAGTTC 62.016 63.158 38.05 22.75 41.47 3.01
3163 3348 3.345808 GTGCGGCGCAAGAGTTCA 61.346 61.111 38.05 8.44 41.47 3.18
3164 3349 3.345808 TGCGGCGCAAGAGTTCAC 61.346 61.111 34.58 0.00 43.02 3.18
3165 3350 3.044305 GCGGCGCAAGAGTTCACT 61.044 61.111 29.21 0.00 43.02 3.41
3166 3351 1.736645 GCGGCGCAAGAGTTCACTA 60.737 57.895 29.21 0.00 43.02 2.74
3167 3352 1.687494 GCGGCGCAAGAGTTCACTAG 61.687 60.000 29.21 0.00 43.02 2.57
3168 3353 0.388649 CGGCGCAAGAGTTCACTAGT 60.389 55.000 10.83 0.00 43.02 2.57
3169 3354 1.797025 GGCGCAAGAGTTCACTAGTT 58.203 50.000 10.83 0.00 43.02 2.24
3170 3355 2.670229 CGGCGCAAGAGTTCACTAGTTA 60.670 50.000 10.83 0.00 43.02 2.24
3171 3356 2.666994 GGCGCAAGAGTTCACTAGTTAC 59.333 50.000 10.83 0.00 43.02 2.50
3172 3357 3.576648 GCGCAAGAGTTCACTAGTTACT 58.423 45.455 0.30 7.04 43.02 2.24
3173 3358 4.380233 GGCGCAAGAGTTCACTAGTTACTA 60.380 45.833 10.83 0.00 43.02 1.82
3174 3359 4.794246 GCGCAAGAGTTCACTAGTTACTAG 59.206 45.833 16.96 16.96 38.86 2.57
3175 3360 5.619533 GCGCAAGAGTTCACTAGTTACTAGT 60.620 44.000 18.31 18.31 44.03 2.57
3176 3361 6.022821 CGCAAGAGTTCACTAGTTACTAGTC 58.977 44.000 20.80 11.08 42.28 2.59
3177 3362 6.022821 GCAAGAGTTCACTAGTTACTAGTCG 58.977 44.000 20.80 15.94 44.37 4.18
3178 3363 6.544622 CAAGAGTTCACTAGTTACTAGTCGG 58.455 44.000 20.80 11.89 44.37 4.79
3179 3364 5.803552 AGAGTTCACTAGTTACTAGTCGGT 58.196 41.667 20.80 7.36 44.37 4.69
3180 3365 5.642919 AGAGTTCACTAGTTACTAGTCGGTG 59.357 44.000 20.80 11.68 44.37 4.94
3181 3366 5.312079 AGTTCACTAGTTACTAGTCGGTGT 58.688 41.667 20.80 4.04 44.37 4.16
3182 3367 5.767168 AGTTCACTAGTTACTAGTCGGTGTT 59.233 40.000 20.80 4.05 44.37 3.32
3183 3368 5.618056 TCACTAGTTACTAGTCGGTGTTG 57.382 43.478 20.80 9.33 44.37 3.33
3184 3369 5.065914 TCACTAGTTACTAGTCGGTGTTGT 58.934 41.667 20.80 0.00 44.37 3.32
3185 3370 5.180117 TCACTAGTTACTAGTCGGTGTTGTC 59.820 44.000 20.80 0.00 44.37 3.18
3186 3371 3.549299 AGTTACTAGTCGGTGTTGTCG 57.451 47.619 0.00 0.00 0.00 4.35
3187 3372 1.981533 GTTACTAGTCGGTGTTGTCGC 59.018 52.381 0.00 0.00 0.00 5.19
3188 3373 0.523072 TACTAGTCGGTGTTGTCGCC 59.477 55.000 0.00 0.00 40.52 5.54
3194 3379 2.029964 GGTGTTGTCGCCGGAAGA 59.970 61.111 5.05 0.00 34.40 2.87
3195 3380 2.027625 GGTGTTGTCGCCGGAAGAG 61.028 63.158 5.05 0.00 34.40 2.85
3196 3381 1.300697 GTGTTGTCGCCGGAAGAGT 60.301 57.895 5.05 0.00 0.00 3.24
3197 3382 1.006571 TGTTGTCGCCGGAAGAGTC 60.007 57.895 5.05 0.00 0.00 3.36
3198 3383 2.087009 GTTGTCGCCGGAAGAGTCG 61.087 63.158 5.05 0.00 0.00 4.18
3204 3389 3.198582 CCGGAAGAGTCGGTCTCC 58.801 66.667 0.00 0.00 43.71 3.71
3205 3390 1.378778 CCGGAAGAGTCGGTCTCCT 60.379 63.158 0.00 0.00 43.71 3.69
3206 3391 1.378124 CCGGAAGAGTCGGTCTCCTC 61.378 65.000 0.00 0.00 43.71 3.71
3207 3392 0.393267 CGGAAGAGTCGGTCTCCTCT 60.393 60.000 0.00 0.00 43.71 3.69
3208 3393 1.385528 GGAAGAGTCGGTCTCCTCTC 58.614 60.000 0.00 0.00 43.71 3.20
3209 3394 1.385528 GAAGAGTCGGTCTCCTCTCC 58.614 60.000 0.00 0.00 43.71 3.71
3210 3395 0.033894 AAGAGTCGGTCTCCTCTCCC 60.034 60.000 0.00 0.00 43.71 4.30
3211 3396 1.208844 AGAGTCGGTCTCCTCTCCCA 61.209 60.000 0.00 0.00 43.71 4.37
3212 3397 1.000646 AGTCGGTCTCCTCTCCCAC 60.001 63.158 0.00 0.00 0.00 4.61
3213 3398 1.304217 GTCGGTCTCCTCTCCCACA 60.304 63.158 0.00 0.00 0.00 4.17
3214 3399 1.000771 TCGGTCTCCTCTCCCACAG 60.001 63.158 0.00 0.00 0.00 3.66
3215 3400 1.000771 CGGTCTCCTCTCCCACAGA 60.001 63.158 0.00 0.00 0.00 3.41
3216 3401 0.396417 CGGTCTCCTCTCCCACAGAT 60.396 60.000 0.00 0.00 0.00 2.90
3217 3402 1.133761 CGGTCTCCTCTCCCACAGATA 60.134 57.143 0.00 0.00 0.00 1.98
3218 3403 2.593026 GGTCTCCTCTCCCACAGATAG 58.407 57.143 0.00 0.00 0.00 2.08
3219 3404 1.960689 GTCTCCTCTCCCACAGATAGC 59.039 57.143 0.00 0.00 0.00 2.97
3220 3405 1.133325 TCTCCTCTCCCACAGATAGCC 60.133 57.143 0.00 0.00 0.00 3.93
3221 3406 0.636647 TCCTCTCCCACAGATAGCCA 59.363 55.000 0.00 0.00 0.00 4.75
3222 3407 0.755686 CCTCTCCCACAGATAGCCAC 59.244 60.000 0.00 0.00 0.00 5.01
3223 3408 1.690845 CCTCTCCCACAGATAGCCACT 60.691 57.143 0.00 0.00 0.00 4.00
3224 3409 1.686052 CTCTCCCACAGATAGCCACTC 59.314 57.143 0.00 0.00 0.00 3.51
3225 3410 0.755686 CTCCCACAGATAGCCACTCC 59.244 60.000 0.00 0.00 0.00 3.85
3226 3411 1.043116 TCCCACAGATAGCCACTCCG 61.043 60.000 0.00 0.00 0.00 4.63
3227 3412 1.443407 CCACAGATAGCCACTCCGG 59.557 63.158 0.00 0.00 38.11 5.14
3236 3421 4.647615 CCACTCCGGCTATCGCGG 62.648 72.222 6.13 0.00 37.59 6.46
3237 3422 3.592814 CACTCCGGCTATCGCGGA 61.593 66.667 6.13 0.00 38.62 5.54
3238 3423 3.593794 ACTCCGGCTATCGCGGAC 61.594 66.667 6.13 0.00 38.62 4.79
3239 3424 3.592814 CTCCGGCTATCGCGGACA 61.593 66.667 6.13 0.00 38.62 4.02
3240 3425 3.825833 CTCCGGCTATCGCGGACAC 62.826 68.421 6.13 0.00 38.62 3.67
3241 3426 4.944372 CCGGCTATCGCGGACACC 62.944 72.222 6.13 2.32 38.62 4.16
3242 3427 3.900892 CGGCTATCGCGGACACCT 61.901 66.667 6.13 0.00 38.62 4.00
3243 3428 2.027751 GGCTATCGCGGACACCTC 59.972 66.667 6.13 0.00 36.88 3.85
3244 3429 2.491022 GGCTATCGCGGACACCTCT 61.491 63.158 6.13 0.00 36.88 3.69
3245 3430 1.008309 GCTATCGCGGACACCTCTC 60.008 63.158 6.13 0.00 0.00 3.20
3246 3431 1.448922 GCTATCGCGGACACCTCTCT 61.449 60.000 6.13 0.00 0.00 3.10
3247 3432 0.589223 CTATCGCGGACACCTCTCTC 59.411 60.000 6.13 0.00 0.00 3.20
3248 3433 0.180642 TATCGCGGACACCTCTCTCT 59.819 55.000 6.13 0.00 0.00 3.10
3249 3434 1.098712 ATCGCGGACACCTCTCTCTC 61.099 60.000 6.13 0.00 0.00 3.20
3250 3435 1.747367 CGCGGACACCTCTCTCTCT 60.747 63.158 0.00 0.00 0.00 3.10
3251 3436 1.806568 GCGGACACCTCTCTCTCTG 59.193 63.158 0.00 0.00 0.00 3.35
3252 3437 1.662438 GCGGACACCTCTCTCTCTGG 61.662 65.000 0.00 0.00 0.00 3.86
3253 3438 1.662438 CGGACACCTCTCTCTCTGGC 61.662 65.000 0.00 0.00 0.00 4.85
3254 3439 1.326951 GGACACCTCTCTCTCTGGCC 61.327 65.000 0.00 0.00 0.00 5.36
3255 3440 1.662438 GACACCTCTCTCTCTGGCCG 61.662 65.000 0.00 0.00 0.00 6.13
3256 3441 2.757917 ACCTCTCTCTCTGGCCGC 60.758 66.667 0.00 0.00 0.00 6.53
3257 3442 3.535962 CCTCTCTCTCTGGCCGCC 61.536 72.222 1.04 1.04 0.00 6.13
3258 3443 3.898509 CTCTCTCTCTGGCCGCCG 61.899 72.222 4.58 0.00 0.00 6.46
3259 3444 4.742649 TCTCTCTCTGGCCGCCGT 62.743 66.667 4.58 0.00 0.00 5.68
3260 3445 4.200283 CTCTCTCTGGCCGCCGTC 62.200 72.222 4.58 0.00 0.00 4.79
3261 3446 4.742649 TCTCTCTGGCCGCCGTCT 62.743 66.667 4.58 0.00 0.00 4.18
3262 3447 4.504916 CTCTCTGGCCGCCGTCTG 62.505 72.222 4.58 0.00 0.00 3.51
3270 3455 4.452733 CCGCCGTCTGGACCCTTC 62.453 72.222 0.00 0.00 37.49 3.46
3271 3456 3.382832 CGCCGTCTGGACCCTTCT 61.383 66.667 0.00 0.00 37.49 2.85
3272 3457 2.579738 GCCGTCTGGACCCTTCTC 59.420 66.667 0.00 0.00 37.49 2.87
3273 3458 3.020237 GCCGTCTGGACCCTTCTCC 62.020 68.421 0.00 0.00 37.49 3.71
3274 3459 2.359967 CCGTCTGGACCCTTCTCCC 61.360 68.421 0.00 0.00 37.49 4.30
3275 3460 2.359967 CGTCTGGACCCTTCTCCCC 61.360 68.421 0.00 0.00 0.00 4.81
3276 3461 1.229529 GTCTGGACCCTTCTCCCCA 60.230 63.158 0.00 0.00 0.00 4.96
3277 3462 1.229529 TCTGGACCCTTCTCCCCAC 60.230 63.158 0.00 0.00 0.00 4.61
3278 3463 2.204090 TGGACCCTTCTCCCCACC 60.204 66.667 0.00 0.00 0.00 4.61
3279 3464 3.015753 GGACCCTTCTCCCCACCC 61.016 72.222 0.00 0.00 0.00 4.61
3280 3465 3.400054 GACCCTTCTCCCCACCCG 61.400 72.222 0.00 0.00 0.00 5.28
3298 3483 4.431131 CCCGTCTTGGCCATGGCT 62.431 66.667 34.70 0.00 41.60 4.75
3299 3484 3.136123 CCGTCTTGGCCATGGCTG 61.136 66.667 34.70 23.87 41.60 4.85
3300 3485 3.818787 CGTCTTGGCCATGGCTGC 61.819 66.667 34.70 20.50 41.60 5.25
3301 3486 3.818787 GTCTTGGCCATGGCTGCG 61.819 66.667 34.70 22.02 41.60 5.18
3327 3512 2.651361 CGTTCTGCGGTCTGAGGT 59.349 61.111 0.00 0.00 36.85 3.85
3328 3513 1.444553 CGTTCTGCGGTCTGAGGTC 60.445 63.158 0.00 0.00 36.85 3.85
3329 3514 1.444553 GTTCTGCGGTCTGAGGTCG 60.445 63.158 0.00 0.00 0.00 4.79
3330 3515 1.901948 TTCTGCGGTCTGAGGTCGT 60.902 57.895 0.00 0.00 0.00 4.34
3331 3516 1.863662 TTCTGCGGTCTGAGGTCGTC 61.864 60.000 0.00 0.00 0.00 4.20
3332 3517 3.669036 CTGCGGTCTGAGGTCGTCG 62.669 68.421 0.00 0.00 0.00 5.12
3334 3519 4.813526 CGGTCTGAGGTCGTCGCG 62.814 72.222 0.00 0.00 0.00 5.87
3354 3539 2.246108 GCGTCGCGTTTCCGAAAA 59.754 55.556 5.77 0.00 39.17 2.29
3355 3540 1.787056 GCGTCGCGTTTCCGAAAAG 60.787 57.895 5.77 2.74 39.17 2.27
3356 3541 1.154727 CGTCGCGTTTCCGAAAAGG 60.155 57.895 5.77 0.00 39.17 3.11
3366 3551 4.152625 CGAAAAGGAGCGCCGCTG 62.153 66.667 20.07 0.00 39.88 5.18
3367 3552 3.804193 GAAAAGGAGCGCCGCTGG 61.804 66.667 20.07 0.00 39.88 4.85
3384 3569 2.890371 GCAAGATGCAAGCCCTGG 59.110 61.111 0.00 0.00 44.26 4.45
3385 3570 1.980772 GCAAGATGCAAGCCCTGGT 60.981 57.895 0.00 0.00 44.26 4.00
3386 3571 1.538687 GCAAGATGCAAGCCCTGGTT 61.539 55.000 0.00 0.00 44.26 3.67
3387 3572 0.245539 CAAGATGCAAGCCCTGGTTG 59.754 55.000 0.00 1.84 42.93 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
271 276 3.637229 TGTTTTCCCCTGCGACATTTTTA 59.363 39.130 0.00 0.00 0.00 1.52
345 354 1.737236 CCTCTCTCACACACTCTCTCG 59.263 57.143 0.00 0.00 0.00 4.04
355 364 0.628522 CTCCCTCTCCCTCTCTCACA 59.371 60.000 0.00 0.00 0.00 3.58
406 425 7.681939 AACGTGTGTTGAATATGGTTAATCT 57.318 32.000 0.00 0.00 36.81 2.40
438 457 4.378356 CGATGGTCGATGTTCACACAAAAT 60.378 41.667 0.00 0.00 43.74 1.82
498 519 7.928908 TTTTATTTTTGCGAGGCATCATATC 57.071 32.000 0.00 0.00 38.76 1.63
545 566 6.238374 CGTTCTTAACTCAACAACCATCACTT 60.238 38.462 0.00 0.00 0.00 3.16
568 589 4.062991 GGGAGAGAAAACATAACACACGT 58.937 43.478 0.00 0.00 0.00 4.49
632 653 7.610865 CAGGAATGGGCTTGAGTTTTATTTTA 58.389 34.615 0.00 0.00 0.00 1.52
633 654 6.466812 CAGGAATGGGCTTGAGTTTTATTTT 58.533 36.000 0.00 0.00 0.00 1.82
634 655 5.569428 GCAGGAATGGGCTTGAGTTTTATTT 60.569 40.000 0.00 0.00 0.00 1.40
635 656 4.081476 GCAGGAATGGGCTTGAGTTTTATT 60.081 41.667 0.00 0.00 0.00 1.40
642 663 0.744874 CATGCAGGAATGGGCTTGAG 59.255 55.000 0.00 0.00 37.36 3.02
645 666 1.033746 CGACATGCAGGAATGGGCTT 61.034 55.000 4.84 0.00 31.46 4.35
647 668 2.484062 CCGACATGCAGGAATGGGC 61.484 63.158 4.84 0.00 31.46 5.36
668 689 2.665185 GAGCGGTTTGGACGTGCT 60.665 61.111 8.99 0.50 39.80 4.40
671 692 2.280592 GGTGAGCGGTTTGGACGT 60.281 61.111 0.00 0.00 0.00 4.34
717 738 0.169009 CTTTAAGGCACCGAAGCTGC 59.831 55.000 0.00 0.00 34.17 5.25
718 739 1.464997 GTCTTTAAGGCACCGAAGCTG 59.535 52.381 0.00 0.00 34.17 4.24
719 740 1.071699 TGTCTTTAAGGCACCGAAGCT 59.928 47.619 0.00 0.00 34.17 3.74
720 741 1.197036 GTGTCTTTAAGGCACCGAAGC 59.803 52.381 17.90 0.00 44.65 3.86
727 748 0.771127 AGGCAGGTGTCTTTAAGGCA 59.229 50.000 0.00 0.00 0.00 4.75
728 749 1.911057 AAGGCAGGTGTCTTTAAGGC 58.089 50.000 0.00 0.00 36.42 4.35
734 755 0.178990 GACCCAAAGGCAGGTGTCTT 60.179 55.000 0.00 0.00 42.58 3.01
735 756 1.352622 TGACCCAAAGGCAGGTGTCT 61.353 55.000 0.00 0.00 36.17 3.41
736 757 1.150536 TGACCCAAAGGCAGGTGTC 59.849 57.895 0.00 0.00 36.17 3.67
739 760 1.151450 CAGTGACCCAAAGGCAGGT 59.849 57.895 0.00 0.00 39.75 4.00
740 761 0.890996 GTCAGTGACCCAAAGGCAGG 60.891 60.000 12.54 0.00 36.11 4.85
741 762 0.179020 TGTCAGTGACCCAAAGGCAG 60.179 55.000 20.43 0.00 36.11 4.85
742 763 0.478072 ATGTCAGTGACCCAAAGGCA 59.522 50.000 20.43 0.00 36.11 4.75
743 764 0.883833 CATGTCAGTGACCCAAAGGC 59.116 55.000 20.43 0.00 36.11 4.35
744 765 1.881973 CACATGTCAGTGACCCAAAGG 59.118 52.381 20.43 6.15 42.05 3.11
745 766 1.881973 CCACATGTCAGTGACCCAAAG 59.118 52.381 20.43 8.14 42.05 2.77
747 768 0.110295 CCCACATGTCAGTGACCCAA 59.890 55.000 20.43 2.34 42.05 4.12
748 769 1.760527 CCCACATGTCAGTGACCCA 59.239 57.895 20.43 3.20 42.05 4.51
750 771 0.613260 TAGCCCACATGTCAGTGACC 59.387 55.000 20.43 3.18 42.05 4.02
751 772 2.009042 GCTAGCCCACATGTCAGTGAC 61.009 57.143 16.68 16.68 42.05 3.67
752 773 0.250234 GCTAGCCCACATGTCAGTGA 59.750 55.000 2.29 0.00 42.05 3.41
754 775 1.200760 TGGCTAGCCCACATGTCAGT 61.201 55.000 30.81 0.00 39.18 3.41
755 776 1.603842 TGGCTAGCCCACATGTCAG 59.396 57.895 30.81 0.00 39.18 3.51
756 777 3.818965 TGGCTAGCCCACATGTCA 58.181 55.556 30.81 6.69 39.18 3.58
763 784 2.756400 CAACAGGTGGCTAGCCCA 59.244 61.111 30.81 16.03 42.79 5.36
764 785 2.044946 CCAACAGGTGGCTAGCCC 60.045 66.667 30.81 20.81 41.72 5.19
772 793 4.155063 TGACATATGGATCCAACAGGTG 57.845 45.455 20.67 14.77 0.00 4.00
773 794 5.846164 TCTATGACATATGGATCCAACAGGT 59.154 40.000 20.67 17.14 0.00 4.00
776 797 6.745794 TGTCTATGACATATGGATCCAACA 57.254 37.500 20.67 11.45 37.67 3.33
805 826 4.618965 CTTCGGTGCCTTAAGGTATCTAC 58.381 47.826 22.55 13.13 37.57 2.59
806 827 3.069158 GCTTCGGTGCCTTAAGGTATCTA 59.931 47.826 22.55 8.20 37.57 1.98
808 829 2.210961 GCTTCGGTGCCTTAAGGTATC 58.789 52.381 22.55 17.61 37.57 2.24
811 832 0.328258 ATGCTTCGGTGCCTTAAGGT 59.672 50.000 22.55 0.00 37.57 3.50
813 834 0.652592 CGATGCTTCGGTGCCTTAAG 59.347 55.000 13.82 0.00 41.74 1.85
815 836 4.513519 CGATGCTTCGGTGCCTTA 57.486 55.556 13.82 0.00 41.74 2.69
824 845 2.032799 TGTGTTTTGTGGACGATGCTTC 59.967 45.455 0.00 0.00 0.00 3.86
825 846 2.020720 TGTGTTTTGTGGACGATGCTT 58.979 42.857 0.00 0.00 0.00 3.91
826 847 1.674359 TGTGTTTTGTGGACGATGCT 58.326 45.000 0.00 0.00 0.00 3.79
827 848 2.704725 ATGTGTTTTGTGGACGATGC 57.295 45.000 0.00 0.00 0.00 3.91
828 849 4.858935 AGAAATGTGTTTTGTGGACGATG 58.141 39.130 0.00 0.00 0.00 3.84
829 850 4.821805 AGAGAAATGTGTTTTGTGGACGAT 59.178 37.500 0.00 0.00 0.00 3.73
830 851 4.196193 AGAGAAATGTGTTTTGTGGACGA 58.804 39.130 0.00 0.00 0.00 4.20
832 853 6.329496 TGAAAGAGAAATGTGTTTTGTGGAC 58.671 36.000 0.00 0.00 0.00 4.02
833 854 6.522625 TGAAAGAGAAATGTGTTTTGTGGA 57.477 33.333 0.00 0.00 0.00 4.02
867 921 1.614413 GTTCCCCGCACACCAAAAATA 59.386 47.619 0.00 0.00 0.00 1.40
949 1014 4.494199 CGGAAAGAAGAATGAATGGTACGC 60.494 45.833 0.00 0.00 0.00 4.42
960 1025 3.679824 AGACGAACCGGAAAGAAGAAT 57.320 42.857 9.46 0.00 0.00 2.40
962 1027 2.363038 TCAAGACGAACCGGAAAGAAGA 59.637 45.455 9.46 0.00 0.00 2.87
963 1028 2.731976 CTCAAGACGAACCGGAAAGAAG 59.268 50.000 9.46 0.00 0.00 2.85
967 1032 0.391597 AGCTCAAGACGAACCGGAAA 59.608 50.000 9.46 0.00 0.00 3.13
968 1033 0.391597 AAGCTCAAGACGAACCGGAA 59.608 50.000 9.46 0.00 0.00 4.30
969 1034 0.319555 CAAGCTCAAGACGAACCGGA 60.320 55.000 9.46 0.00 0.00 5.14
970 1035 1.901650 GCAAGCTCAAGACGAACCGG 61.902 60.000 0.00 0.00 0.00 5.28
971 1036 0.946221 AGCAAGCTCAAGACGAACCG 60.946 55.000 0.00 0.00 0.00 4.44
972 1037 0.793250 GAGCAAGCTCAAGACGAACC 59.207 55.000 16.69 0.00 42.31 3.62
1176 1244 2.125832 CCGTTGGACGCGTGGTAT 60.126 61.111 20.70 0.00 40.91 2.73
1410 1478 3.741476 ACGCCGTCGGTGTACTCC 61.741 66.667 28.37 3.76 45.32 3.85
1563 1631 1.079543 CGACCTGAAGTCCCAGCTG 60.080 63.158 6.78 6.78 43.08 4.24
1691 1759 6.552445 TCCCAAGTGAAAAATCAAGGAAAA 57.448 33.333 0.00 0.00 0.00 2.29
1693 1761 6.156083 AGTTTCCCAAGTGAAAAATCAAGGAA 59.844 34.615 0.00 0.00 36.09 3.36
1695 1763 5.917462 AGTTTCCCAAGTGAAAAATCAAGG 58.083 37.500 0.00 0.00 36.09 3.61
1724 1794 0.528901 TCTGCACGCACGTACAAACT 60.529 50.000 0.00 0.00 0.00 2.66
1729 1799 0.806102 ATGGATCTGCACGCACGTAC 60.806 55.000 0.00 0.00 0.00 3.67
1730 1800 0.805711 CATGGATCTGCACGCACGTA 60.806 55.000 0.00 0.00 0.00 3.57
1731 1801 2.102438 CATGGATCTGCACGCACGT 61.102 57.895 0.00 0.00 0.00 4.49
1732 1802 2.705220 CATGGATCTGCACGCACG 59.295 61.111 0.00 0.00 0.00 5.34
1832 1902 0.600255 GGTAGAACCATGCCGGATCG 60.600 60.000 5.05 0.00 41.44 3.69
1868 1938 4.082523 ACCACGTAGCCGCTGCAT 62.083 61.111 9.28 0.00 41.13 3.96
1898 1968 2.266055 GTGAGGCCGAAGACCCAG 59.734 66.667 0.00 0.00 0.00 4.45
1970 2040 1.082117 ATAGGACGAAAAGCGCGGTG 61.082 55.000 13.41 0.65 46.04 4.94
1992 2062 0.753262 ACAGAACTGACCTGAAGCGT 59.247 50.000 8.87 0.00 35.69 5.07
1994 2064 0.871057 GCACAGAACTGACCTGAAGC 59.129 55.000 8.87 0.00 35.69 3.86
2007 2077 3.807553 TGAACTGAACAGATTGCACAGA 58.192 40.909 8.87 0.00 31.64 3.41
2010 2080 4.531332 GAACTGAACTGAACAGATTGCAC 58.469 43.478 8.87 0.00 38.55 4.57
2012 2082 3.565482 TGGAACTGAACTGAACAGATTGC 59.435 43.478 8.87 0.00 38.55 3.56
2033 2103 5.185454 TGCCCATCTGTAATGTAAAGAGTG 58.815 41.667 0.00 0.00 0.00 3.51
2044 2115 4.598022 TGTCATCAAATGCCCATCTGTAA 58.402 39.130 0.00 0.00 0.00 2.41
2045 2116 4.233632 TGTCATCAAATGCCCATCTGTA 57.766 40.909 0.00 0.00 0.00 2.74
2046 2117 3.090210 TGTCATCAAATGCCCATCTGT 57.910 42.857 0.00 0.00 0.00 3.41
2047 2118 4.665833 AATGTCATCAAATGCCCATCTG 57.334 40.909 0.00 0.00 0.00 2.90
2048 2119 4.468510 ACAAATGTCATCAAATGCCCATCT 59.531 37.500 0.00 0.00 0.00 2.90
2049 2120 4.761975 ACAAATGTCATCAAATGCCCATC 58.238 39.130 0.00 0.00 0.00 3.51
2050 2121 4.678574 CGACAAATGTCATCAAATGCCCAT 60.679 41.667 13.51 0.00 44.99 4.00
2051 2122 3.367190 CGACAAATGTCATCAAATGCCCA 60.367 43.478 13.51 0.00 44.99 5.36
2052 2123 3.119531 TCGACAAATGTCATCAAATGCCC 60.120 43.478 13.51 0.00 44.99 5.36
2054 2125 5.334319 TCATCGACAAATGTCATCAAATGC 58.666 37.500 13.51 0.00 44.99 3.56
2055 2126 6.802834 TGTTCATCGACAAATGTCATCAAATG 59.197 34.615 13.51 8.31 44.99 2.32
2056 2127 6.912082 TGTTCATCGACAAATGTCATCAAAT 58.088 32.000 13.51 0.00 44.99 2.32
2094 2178 9.616156 TGTTGGTCAAAGTAGTTAAAAGTATCA 57.384 29.630 0.00 0.00 0.00 2.15
2111 2195 1.680735 AGCAGCGAATTTGTTGGTCAA 59.319 42.857 8.29 0.00 0.00 3.18
2112 2196 1.001487 CAGCAGCGAATTTGTTGGTCA 60.001 47.619 10.90 0.00 0.00 4.02
2113 2197 1.689959 CAGCAGCGAATTTGTTGGTC 58.310 50.000 10.90 0.00 0.00 4.02
2114 2198 0.318955 GCAGCAGCGAATTTGTTGGT 60.319 50.000 8.29 8.29 0.00 3.67
2115 2199 2.437850 GCAGCAGCGAATTTGTTGG 58.562 52.632 11.11 0.00 0.00 3.77
2126 2210 0.390472 ACTCCGTAGAAAGCAGCAGC 60.390 55.000 0.00 0.00 42.56 5.25
2127 2211 2.941453 TACTCCGTAGAAAGCAGCAG 57.059 50.000 0.00 0.00 0.00 4.24
2128 2212 6.835819 ATATATACTCCGTAGAAAGCAGCA 57.164 37.500 0.00 0.00 0.00 4.41
2129 2213 7.759465 TGTATATATACTCCGTAGAAAGCAGC 58.241 38.462 20.80 0.00 34.41 5.25
2130 2214 9.723447 CATGTATATATACTCCGTAGAAAGCAG 57.277 37.037 20.80 0.00 34.41 4.24
2131 2215 8.188799 GCATGTATATATACTCCGTAGAAAGCA 58.811 37.037 20.80 0.02 34.41 3.91
2132 2216 8.407064 AGCATGTATATATACTCCGTAGAAAGC 58.593 37.037 20.80 8.84 34.41 3.51
2133 2217 9.723447 CAGCATGTATATATACTCCGTAGAAAG 57.277 37.037 20.80 0.40 34.41 2.62
2134 2218 9.457436 TCAGCATGTATATATACTCCGTAGAAA 57.543 33.333 20.80 1.23 37.40 2.52
2135 2219 9.457436 TTCAGCATGTATATATACTCCGTAGAA 57.543 33.333 20.80 14.77 37.40 2.10
2136 2220 9.457436 TTTCAGCATGTATATATACTCCGTAGA 57.543 33.333 20.80 10.78 37.40 2.59
2137 2221 9.504710 GTTTCAGCATGTATATATACTCCGTAG 57.495 37.037 20.80 9.04 37.40 3.51
2138 2222 8.179615 CGTTTCAGCATGTATATATACTCCGTA 58.820 37.037 20.80 3.81 37.40 4.02
2139 2223 7.027760 CGTTTCAGCATGTATATATACTCCGT 58.972 38.462 20.80 5.08 37.40 4.69
2140 2224 7.248437 TCGTTTCAGCATGTATATATACTCCG 58.752 38.462 20.80 11.65 37.40 4.63
2141 2225 8.981724 TTCGTTTCAGCATGTATATATACTCC 57.018 34.615 20.80 10.71 37.40 3.85
2144 2228 9.973246 CCAATTCGTTTCAGCATGTATATATAC 57.027 33.333 14.86 14.86 37.40 1.47
2145 2229 9.936759 TCCAATTCGTTTCAGCATGTATATATA 57.063 29.630 0.00 0.00 37.40 0.86
2146 2230 8.846943 TCCAATTCGTTTCAGCATGTATATAT 57.153 30.769 0.00 0.00 37.40 0.86
2147 2231 8.846943 ATCCAATTCGTTTCAGCATGTATATA 57.153 30.769 0.00 0.00 37.40 0.86
2148 2232 7.360353 CGATCCAATTCGTTTCAGCATGTATAT 60.360 37.037 0.00 0.00 34.00 0.86
2149 2233 6.073819 CGATCCAATTCGTTTCAGCATGTATA 60.074 38.462 0.00 0.00 34.00 1.47
2150 2234 5.277490 CGATCCAATTCGTTTCAGCATGTAT 60.277 40.000 0.00 0.00 34.00 2.29
2151 2235 4.033932 CGATCCAATTCGTTTCAGCATGTA 59.966 41.667 0.00 0.00 34.00 2.29
2152 2236 3.181507 CGATCCAATTCGTTTCAGCATGT 60.182 43.478 0.00 0.00 34.00 3.21
2153 2237 3.063861 TCGATCCAATTCGTTTCAGCATG 59.936 43.478 0.00 0.00 40.03 4.06
2311 2456 2.935201 CCTGTACTTCTGATCAGCTTGC 59.065 50.000 18.36 8.27 0.00 4.01
2315 2460 2.275318 GTGCCTGTACTTCTGATCAGC 58.725 52.381 18.36 4.35 0.00 4.26
2331 2476 2.746277 CACCAAGGTAGGCGTGCC 60.746 66.667 5.27 5.27 0.00 5.01
2362 2507 3.537206 GACGAAGGCCACCACAGCT 62.537 63.158 5.01 0.00 0.00 4.24
2479 2624 2.892374 TGATCGGTTGCAGTACATCAG 58.108 47.619 0.00 0.00 0.00 2.90
2638 2823 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
2639 2824 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
2640 2825 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
2718 2903 9.325198 TGCACTTTCACATCGTATAGATTTATT 57.675 29.630 0.00 0.00 37.52 1.40
2719 2904 8.887036 TGCACTTTCACATCGTATAGATTTAT 57.113 30.769 0.00 0.00 37.52 1.40
2720 2905 8.887036 ATGCACTTTCACATCGTATAGATTTA 57.113 30.769 0.00 0.00 37.52 1.40
2721 2906 7.792374 ATGCACTTTCACATCGTATAGATTT 57.208 32.000 0.00 0.00 37.52 2.17
2722 2907 7.792374 AATGCACTTTCACATCGTATAGATT 57.208 32.000 0.00 0.00 37.52 2.40
2723 2908 7.792374 AAATGCACTTTCACATCGTATAGAT 57.208 32.000 0.00 0.00 41.01 1.98
2724 2909 8.710835 TTAAATGCACTTTCACATCGTATAGA 57.289 30.769 0.00 0.00 0.00 1.98
2807 2992 6.253512 GTCAAGCTTTACAAACTTTGACCAAG 59.746 38.462 8.55 7.77 38.64 3.61
2808 2993 6.071616 AGTCAAGCTTTACAAACTTTGACCAA 60.072 34.615 13.07 0.00 0.00 3.67
2809 2994 5.417580 AGTCAAGCTTTACAAACTTTGACCA 59.582 36.000 13.07 0.00 0.00 4.02
2810 2995 5.891451 AGTCAAGCTTTACAAACTTTGACC 58.109 37.500 13.07 0.00 0.00 4.02
2811 2996 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
2814 2999 8.250332 TGATCAAAGTCAAGCTTTACAAACTTT 58.750 29.630 13.07 12.29 44.95 2.66
2815 3000 7.771183 TGATCAAAGTCAAGCTTTACAAACTT 58.229 30.769 13.07 7.60 44.95 2.66
2816 3001 7.333528 TGATCAAAGTCAAGCTTTACAAACT 57.666 32.000 13.07 2.11 44.95 2.66
2817 3002 7.985634 TTGATCAAAGTCAAGCTTTACAAAC 57.014 32.000 13.07 0.00 44.95 2.93
2818 3003 8.633075 CTTTGATCAAAGTCAAGCTTTACAAA 57.367 30.769 31.54 2.71 44.95 2.83
2833 3018 7.320443 AGTTCGCATATTAGCTTTGATCAAA 57.680 32.000 19.45 19.45 0.00 2.69
2834 3019 6.925610 AGTTCGCATATTAGCTTTGATCAA 57.074 33.333 3.38 3.38 0.00 2.57
2835 3020 8.432110 TTTAGTTCGCATATTAGCTTTGATCA 57.568 30.769 0.00 0.00 0.00 2.92
2842 3027 9.646336 CGTTTTTATTTAGTTCGCATATTAGCT 57.354 29.630 0.00 0.00 0.00 3.32
2843 3028 8.889000 CCGTTTTTATTTAGTTCGCATATTAGC 58.111 33.333 0.00 0.00 0.00 3.09
2846 3031 8.885722 TCTCCGTTTTTATTTAGTTCGCATATT 58.114 29.630 0.00 0.00 0.00 1.28
2847 3032 8.428186 TCTCCGTTTTTATTTAGTTCGCATAT 57.572 30.769 0.00 0.00 0.00 1.78
2848 3033 7.760794 TCTCTCCGTTTTTATTTAGTTCGCATA 59.239 33.333 0.00 0.00 0.00 3.14
2849 3034 6.592607 TCTCTCCGTTTTTATTTAGTTCGCAT 59.407 34.615 0.00 0.00 0.00 4.73
2850 3035 5.927689 TCTCTCCGTTTTTATTTAGTTCGCA 59.072 36.000 0.00 0.00 0.00 5.10
2851 3036 6.090493 ACTCTCTCCGTTTTTATTTAGTTCGC 59.910 38.462 0.00 0.00 0.00 4.70
2852 3037 7.578169 ACTCTCTCCGTTTTTATTTAGTTCG 57.422 36.000 0.00 0.00 0.00 3.95
2853 3038 9.415544 TGTACTCTCTCCGTTTTTATTTAGTTC 57.584 33.333 0.00 0.00 0.00 3.01
2854 3039 9.768662 TTGTACTCTCTCCGTTTTTATTTAGTT 57.231 29.630 0.00 0.00 0.00 2.24
2855 3040 9.201127 GTTGTACTCTCTCCGTTTTTATTTAGT 57.799 33.333 0.00 0.00 0.00 2.24
2856 3041 9.199982 TGTTGTACTCTCTCCGTTTTTATTTAG 57.800 33.333 0.00 0.00 0.00 1.85
2857 3042 9.715121 ATGTTGTACTCTCTCCGTTTTTATTTA 57.285 29.630 0.00 0.00 0.00 1.40
2858 3043 8.617290 ATGTTGTACTCTCTCCGTTTTTATTT 57.383 30.769 0.00 0.00 0.00 1.40
2859 3044 9.367444 CTATGTTGTACTCTCTCCGTTTTTATT 57.633 33.333 0.00 0.00 0.00 1.40
2860 3045 8.746530 TCTATGTTGTACTCTCTCCGTTTTTAT 58.253 33.333 0.00 0.00 0.00 1.40
2861 3046 8.114331 TCTATGTTGTACTCTCTCCGTTTTTA 57.886 34.615 0.00 0.00 0.00 1.52
2862 3047 6.989659 TCTATGTTGTACTCTCTCCGTTTTT 58.010 36.000 0.00 0.00 0.00 1.94
2863 3048 6.585695 TCTATGTTGTACTCTCTCCGTTTT 57.414 37.500 0.00 0.00 0.00 2.43
2864 3049 6.585695 TTCTATGTTGTACTCTCTCCGTTT 57.414 37.500 0.00 0.00 0.00 3.60
2865 3050 6.585695 TTTCTATGTTGTACTCTCTCCGTT 57.414 37.500 0.00 0.00 0.00 4.44
2866 3051 6.585695 TTTTCTATGTTGTACTCTCTCCGT 57.414 37.500 0.00 0.00 0.00 4.69
2867 3052 8.480643 AATTTTTCTATGTTGTACTCTCTCCG 57.519 34.615 0.00 0.00 0.00 4.63
2868 3053 9.436957 TGAATTTTTCTATGTTGTACTCTCTCC 57.563 33.333 0.00 0.00 0.00 3.71
2870 3055 8.940952 GCTGAATTTTTCTATGTTGTACTCTCT 58.059 33.333 0.00 0.00 0.00 3.10
2871 3056 8.721478 TGCTGAATTTTTCTATGTTGTACTCTC 58.279 33.333 0.00 0.00 0.00 3.20
2872 3057 8.621532 TGCTGAATTTTTCTATGTTGTACTCT 57.378 30.769 0.00 0.00 0.00 3.24
2873 3058 9.334693 CTTGCTGAATTTTTCTATGTTGTACTC 57.665 33.333 0.00 0.00 0.00 2.59
2874 3059 9.066892 TCTTGCTGAATTTTTCTATGTTGTACT 57.933 29.630 0.00 0.00 0.00 2.73
2875 3060 9.677567 TTCTTGCTGAATTTTTCTATGTTGTAC 57.322 29.630 0.00 0.00 0.00 2.90
2876 3061 9.677567 GTTCTTGCTGAATTTTTCTATGTTGTA 57.322 29.630 0.00 0.00 36.99 2.41
2877 3062 8.196771 TGTTCTTGCTGAATTTTTCTATGTTGT 58.803 29.630 0.00 0.00 36.99 3.32
2878 3063 8.578308 TGTTCTTGCTGAATTTTTCTATGTTG 57.422 30.769 0.00 0.00 36.99 3.33
2886 3071 5.351189 GTGGTGTTGTTCTTGCTGAATTTTT 59.649 36.000 0.00 0.00 36.99 1.94
2936 3121 0.763223 CCCCAGGCCTACCTCGTAAT 60.763 60.000 3.98 0.00 46.34 1.89
2957 3142 2.198827 TGAATCGGCCACTCAACATT 57.801 45.000 2.24 0.00 0.00 2.71
2994 3179 0.537143 ATTGGAGGTTCTGCACGCAA 60.537 50.000 0.00 0.00 30.08 4.85
2998 3183 1.457346 CCTGATTGGAGGTTCTGCAC 58.543 55.000 0.00 0.00 38.35 4.57
3064 3249 4.702612 TGCTTTAAAGTTTATGCCGATGGA 59.297 37.500 16.38 0.00 0.00 3.41
3075 3260 6.268566 CAAACTCTGAGCTGCTTTAAAGTTT 58.731 36.000 16.38 18.94 36.45 2.66
3090 3275 3.401033 TTTCAGCGATCCAAACTCTGA 57.599 42.857 0.00 0.00 32.58 3.27
3097 3282 2.029380 TCGAGAGTTTTCAGCGATCCAA 60.029 45.455 0.00 0.00 30.79 3.53
3101 3286 2.854777 CGATTCGAGAGTTTTCAGCGAT 59.145 45.455 0.00 0.00 34.13 4.58
3109 3294 2.457366 AACTGCCGATTCGAGAGTTT 57.543 45.000 7.83 0.00 28.86 2.66
3115 3300 3.137484 CTGGAAACTGCCGATTCGA 57.863 52.632 7.83 0.00 0.00 3.71
3144 3329 3.016474 GAACTCTTGCGCCGCACTC 62.016 63.158 13.21 0.00 38.71 3.51
3145 3330 3.044305 GAACTCTTGCGCCGCACT 61.044 61.111 13.21 0.00 38.71 4.40
3146 3331 3.345808 TGAACTCTTGCGCCGCAC 61.346 61.111 13.21 0.00 38.71 5.34
3147 3332 2.428960 TAGTGAACTCTTGCGCCGCA 62.429 55.000 8.16 8.16 36.47 5.69
3148 3333 1.687494 CTAGTGAACTCTTGCGCCGC 61.687 60.000 4.18 0.00 0.00 6.53
3149 3334 0.388649 ACTAGTGAACTCTTGCGCCG 60.389 55.000 4.18 0.00 0.00 6.46
3150 3335 1.797025 AACTAGTGAACTCTTGCGCC 58.203 50.000 4.18 0.00 0.00 6.53
3152 3337 5.940595 ACTAGTAACTAGTGAACTCTTGCG 58.059 41.667 13.02 3.66 44.47 4.85
3153 3338 6.022821 CGACTAGTAACTAGTGAACTCTTGC 58.977 44.000 13.02 3.73 45.90 4.01
3154 3339 6.149142 ACCGACTAGTAACTAGTGAACTCTTG 59.851 42.308 13.02 8.62 45.90 3.02
3155 3340 6.149142 CACCGACTAGTAACTAGTGAACTCTT 59.851 42.308 13.02 3.82 45.90 2.85
3156 3341 5.642919 CACCGACTAGTAACTAGTGAACTCT 59.357 44.000 13.02 2.57 45.90 3.24
3157 3342 5.411053 ACACCGACTAGTAACTAGTGAACTC 59.589 44.000 13.02 1.78 45.90 3.01
3158 3343 5.312079 ACACCGACTAGTAACTAGTGAACT 58.688 41.667 13.88 13.88 45.90 3.01
3159 3344 5.619625 ACACCGACTAGTAACTAGTGAAC 57.380 43.478 0.00 0.00 45.90 3.18
3160 3345 5.532406 ACAACACCGACTAGTAACTAGTGAA 59.468 40.000 0.00 0.00 45.90 3.18
3161 3346 5.065914 ACAACACCGACTAGTAACTAGTGA 58.934 41.667 0.00 0.00 45.90 3.41
3162 3347 5.368256 ACAACACCGACTAGTAACTAGTG 57.632 43.478 0.00 2.17 45.90 2.74
3164 3349 4.645956 CGACAACACCGACTAGTAACTAG 58.354 47.826 0.00 0.00 39.72 2.57
3165 3350 3.120199 GCGACAACACCGACTAGTAACTA 60.120 47.826 0.00 0.00 0.00 2.24
3166 3351 2.351157 GCGACAACACCGACTAGTAACT 60.351 50.000 0.00 0.00 0.00 2.24
3167 3352 1.981533 GCGACAACACCGACTAGTAAC 59.018 52.381 0.00 0.00 0.00 2.50
3168 3353 1.068333 GGCGACAACACCGACTAGTAA 60.068 52.381 0.00 0.00 31.20 2.24
3169 3354 0.523072 GGCGACAACACCGACTAGTA 59.477 55.000 0.00 0.00 31.20 1.82
3170 3355 1.288127 GGCGACAACACCGACTAGT 59.712 57.895 0.00 0.00 31.20 2.57
3171 3356 4.164252 GGCGACAACACCGACTAG 57.836 61.111 0.00 0.00 31.20 2.57
3177 3362 2.027625 CTCTTCCGGCGACAACACC 61.028 63.158 9.30 0.00 0.00 4.16
3178 3363 1.282930 GACTCTTCCGGCGACAACAC 61.283 60.000 9.30 0.00 0.00 3.32
3179 3364 1.006571 GACTCTTCCGGCGACAACA 60.007 57.895 9.30 0.00 0.00 3.33
3180 3365 2.087009 CGACTCTTCCGGCGACAAC 61.087 63.158 9.30 0.00 0.00 3.32
3181 3366 2.257371 CGACTCTTCCGGCGACAA 59.743 61.111 9.30 0.00 0.00 3.18
3182 3367 3.744719 CCGACTCTTCCGGCGACA 61.745 66.667 9.30 0.00 40.54 4.35
3188 3373 2.099994 GAGGAGACCGACTCTTCCG 58.900 63.158 9.34 0.00 43.18 4.30
3191 3376 0.033894 GGGAGAGGAGACCGACTCTT 60.034 60.000 0.00 2.55 43.71 2.85
3192 3377 1.208844 TGGGAGAGGAGACCGACTCT 61.209 60.000 0.00 0.00 46.18 3.24
3193 3378 1.033202 GTGGGAGAGGAGACCGACTC 61.033 65.000 0.00 0.00 44.24 3.36
3194 3379 1.000646 GTGGGAGAGGAGACCGACT 60.001 63.158 0.00 0.00 33.30 4.18
3195 3380 1.304217 TGTGGGAGAGGAGACCGAC 60.304 63.158 0.00 0.00 35.88 4.79
3196 3381 1.000771 CTGTGGGAGAGGAGACCGA 60.001 63.158 0.00 0.00 0.00 4.69
3197 3382 0.396417 ATCTGTGGGAGAGGAGACCG 60.396 60.000 0.00 0.00 32.80 4.79
3198 3383 2.593026 CTATCTGTGGGAGAGGAGACC 58.407 57.143 0.00 0.00 32.80 3.85
3199 3384 1.960689 GCTATCTGTGGGAGAGGAGAC 59.039 57.143 0.00 0.00 34.16 3.36
3200 3385 1.133325 GGCTATCTGTGGGAGAGGAGA 60.133 57.143 0.00 0.00 34.16 3.71
3201 3386 1.337118 GGCTATCTGTGGGAGAGGAG 58.663 60.000 0.00 0.00 34.16 3.69
3202 3387 0.636647 TGGCTATCTGTGGGAGAGGA 59.363 55.000 0.00 0.00 34.16 3.71
3203 3388 0.755686 GTGGCTATCTGTGGGAGAGG 59.244 60.000 0.00 0.00 34.16 3.69
3204 3389 1.686052 GAGTGGCTATCTGTGGGAGAG 59.314 57.143 0.00 0.00 36.45 3.20
3205 3390 1.689575 GGAGTGGCTATCTGTGGGAGA 60.690 57.143 0.00 0.00 34.25 3.71
3206 3391 0.755686 GGAGTGGCTATCTGTGGGAG 59.244 60.000 0.00 0.00 0.00 4.30
3207 3392 1.043116 CGGAGTGGCTATCTGTGGGA 61.043 60.000 0.00 0.00 0.00 4.37
3208 3393 1.443407 CGGAGTGGCTATCTGTGGG 59.557 63.158 0.00 0.00 0.00 4.61
3209 3394 1.443407 CCGGAGTGGCTATCTGTGG 59.557 63.158 0.00 0.00 0.00 4.17
3228 3413 0.589223 GAGAGAGGTGTCCGCGATAG 59.411 60.000 8.23 0.00 0.00 2.08
3229 3414 0.180642 AGAGAGAGGTGTCCGCGATA 59.819 55.000 8.23 0.00 0.00 2.92
3230 3415 1.077357 AGAGAGAGGTGTCCGCGAT 60.077 57.895 8.23 0.00 0.00 4.58
3231 3416 1.745864 GAGAGAGAGGTGTCCGCGA 60.746 63.158 8.23 0.00 0.00 5.87
3232 3417 1.747367 AGAGAGAGAGGTGTCCGCG 60.747 63.158 0.00 0.00 0.00 6.46
3233 3418 1.662438 CCAGAGAGAGAGGTGTCCGC 61.662 65.000 0.00 0.00 0.00 5.54
3234 3419 1.662438 GCCAGAGAGAGAGGTGTCCG 61.662 65.000 0.00 0.00 0.00 4.79
3235 3420 1.326951 GGCCAGAGAGAGAGGTGTCC 61.327 65.000 0.00 0.00 0.00 4.02
3236 3421 1.662438 CGGCCAGAGAGAGAGGTGTC 61.662 65.000 2.24 0.00 0.00 3.67
3237 3422 1.680651 CGGCCAGAGAGAGAGGTGT 60.681 63.158 2.24 0.00 0.00 4.16
3238 3423 3.074999 GCGGCCAGAGAGAGAGGTG 62.075 68.421 2.24 0.00 0.00 4.00
3239 3424 2.757917 GCGGCCAGAGAGAGAGGT 60.758 66.667 2.24 0.00 0.00 3.85
3240 3425 3.535962 GGCGGCCAGAGAGAGAGG 61.536 72.222 15.62 0.00 0.00 3.69
3241 3426 3.898509 CGGCGGCCAGAGAGAGAG 61.899 72.222 20.71 0.00 0.00 3.20
3242 3427 4.742649 ACGGCGGCCAGAGAGAGA 62.743 66.667 20.71 0.00 0.00 3.10
3243 3428 4.200283 GACGGCGGCCAGAGAGAG 62.200 72.222 20.71 2.83 0.00 3.20
3244 3429 4.742649 AGACGGCGGCCAGAGAGA 62.743 66.667 20.71 0.00 0.00 3.10
3245 3430 4.504916 CAGACGGCGGCCAGAGAG 62.505 72.222 20.71 4.43 0.00 3.20
3253 3438 4.452733 GAAGGGTCCAGACGGCGG 62.453 72.222 13.24 0.00 0.00 6.13
3254 3439 3.358076 GAGAAGGGTCCAGACGGCG 62.358 68.421 4.80 4.80 0.00 6.46
3255 3440 2.579738 GAGAAGGGTCCAGACGGC 59.420 66.667 0.00 0.00 0.00 5.68
3256 3441 2.359967 GGGAGAAGGGTCCAGACGG 61.360 68.421 0.00 0.00 38.52 4.79
3257 3442 2.359967 GGGGAGAAGGGTCCAGACG 61.360 68.421 0.00 0.00 38.52 4.18
3258 3443 1.229529 TGGGGAGAAGGGTCCAGAC 60.230 63.158 0.00 0.00 38.52 3.51
3259 3444 1.229529 GTGGGGAGAAGGGTCCAGA 60.230 63.158 0.00 0.00 38.52 3.86
3260 3445 2.301738 GGTGGGGAGAAGGGTCCAG 61.302 68.421 0.00 0.00 38.52 3.86
3261 3446 2.204090 GGTGGGGAGAAGGGTCCA 60.204 66.667 0.00 0.00 38.52 4.02
3262 3447 3.015753 GGGTGGGGAGAAGGGTCC 61.016 72.222 0.00 0.00 35.64 4.46
3263 3448 3.400054 CGGGTGGGGAGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
3281 3466 4.431131 AGCCATGGCCAAGACGGG 62.431 66.667 33.14 8.01 43.17 5.28
3282 3467 3.136123 CAGCCATGGCCAAGACGG 61.136 66.667 33.14 9.71 43.17 4.79
3283 3468 3.818787 GCAGCCATGGCCAAGACG 61.819 66.667 33.14 15.26 43.17 4.18
3284 3469 3.818787 CGCAGCCATGGCCAAGAC 61.819 66.667 33.14 16.47 43.17 3.01
3310 3495 1.444553 GACCTCAGACCGCAGAACG 60.445 63.158 0.00 0.00 43.15 3.95
3311 3496 1.444553 CGACCTCAGACCGCAGAAC 60.445 63.158 0.00 0.00 0.00 3.01
3312 3497 1.863662 GACGACCTCAGACCGCAGAA 61.864 60.000 0.00 0.00 0.00 3.02
3313 3498 2.282251 ACGACCTCAGACCGCAGA 60.282 61.111 0.00 0.00 0.00 4.26
3314 3499 2.179517 GACGACCTCAGACCGCAG 59.820 66.667 0.00 0.00 0.00 5.18
3315 3500 3.733960 CGACGACCTCAGACCGCA 61.734 66.667 0.00 0.00 0.00 5.69
3317 3502 4.813526 CGCGACGACCTCAGACCG 62.814 72.222 0.00 0.00 0.00 4.79
3344 3529 1.209383 GGCGCTCCTTTTCGGAAAC 59.791 57.895 7.64 0.00 42.53 2.78
3345 3530 2.322081 CGGCGCTCCTTTTCGGAAA 61.322 57.895 7.64 0.00 42.53 3.13
3346 3531 2.740826 CGGCGCTCCTTTTCGGAA 60.741 61.111 7.64 0.00 42.53 4.30
3349 3534 4.152625 CAGCGGCGCTCCTTTTCG 62.153 66.667 34.22 15.56 36.40 3.46
3350 3535 3.804193 CCAGCGGCGCTCCTTTTC 61.804 66.667 34.22 0.00 36.40 2.29
3361 3546 2.488355 CTTGCATCTTGCCAGCGG 59.512 61.111 0.00 0.00 44.23 5.52
3366 3551 2.718073 CCAGGGCTTGCATCTTGCC 61.718 63.158 10.76 10.76 44.23 4.52
3367 3552 1.538687 AACCAGGGCTTGCATCTTGC 61.539 55.000 0.00 0.00 45.29 4.01
3368 3553 0.245539 CAACCAGGGCTTGCATCTTG 59.754 55.000 0.00 0.00 0.00 3.02
3369 3554 1.538687 GCAACCAGGGCTTGCATCTT 61.539 55.000 9.45 0.00 43.04 2.40
3370 3555 1.980772 GCAACCAGGGCTTGCATCT 60.981 57.895 9.45 0.00 43.04 2.90
3371 3556 2.575461 GCAACCAGGGCTTGCATC 59.425 61.111 9.45 0.00 43.04 3.91
3372 3557 3.376078 CGCAACCAGGGCTTGCAT 61.376 61.111 13.73 0.00 43.61 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.