Multiple sequence alignment - TraesCS2A01G190200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G190200 chr2A 100.000 3926 0 0 1 3926 156665812 156669737 0.000000e+00 7251
1 TraesCS2A01G190200 chr2A 93.333 135 9 0 3292 3426 70030768 70030634 2.390000e-47 200
2 TraesCS2A01G190200 chr2D 92.581 1550 58 27 459 2003 145364526 145363029 0.000000e+00 2172
3 TraesCS2A01G190200 chr2D 91.524 1286 52 18 2045 3302 145363029 145361773 0.000000e+00 1718
4 TraesCS2A01G190200 chr2D 89.648 454 18 10 3466 3910 145361653 145361220 5.730000e-153 551
5 TraesCS2A01G190200 chr2D 88.757 169 7 8 682 850 145374015 145373859 3.090000e-46 196
6 TraesCS2A01G190200 chr2B 88.592 1534 101 38 611 2121 202921882 202920400 0.000000e+00 1796
7 TraesCS2A01G190200 chr2B 88.767 1371 75 29 2103 3448 202920384 202919068 0.000000e+00 1605
8 TraesCS2A01G190200 chr2B 92.431 436 20 9 3475 3904 202918768 202918340 9.330000e-171 610
9 TraesCS2A01G190200 chr2B 94.030 134 8 0 3298 3431 646951414 646951281 1.850000e-48 204
10 TraesCS2A01G190200 chr2B 80.000 205 39 2 236 438 79045649 79045853 2.440000e-32 150
11 TraesCS2A01G190200 chr1B 84.360 633 52 24 1114 1741 626308687 626309277 9.460000e-161 577
12 TraesCS2A01G190200 chr4A 87.450 502 39 8 1113 1611 703411294 703411774 1.230000e-154 556
13 TraesCS2A01G190200 chr4A 91.096 146 12 1 3293 3437 652852370 652852225 3.090000e-46 196
14 TraesCS2A01G190200 chr3B 86.546 498 37 5 1113 1607 703847966 703848436 4.500000e-144 521
15 TraesCS2A01G190200 chr3B 93.333 135 9 0 3296 3430 207301294 207301428 2.390000e-47 200
16 TraesCS2A01G190200 chr3A 86.145 498 39 5 1113 1607 259838143 259838613 9.730000e-141 510
17 TraesCS2A01G190200 chr3A 85.141 498 44 8 1113 1607 451658018 451658488 2.120000e-132 483
18 TraesCS2A01G190200 chr3A 85.051 495 44 8 1116 1607 451665004 451664537 9.870000e-131 477
19 TraesCS2A01G190200 chr7D 89.954 219 19 3 232 447 102571001 102571219 2.990000e-71 279
20 TraesCS2A01G190200 chr5D 90.047 211 19 2 232 440 214598729 214598519 5.000000e-69 272
21 TraesCS2A01G190200 chr5D 79.310 203 41 1 236 438 456804934 456804733 1.470000e-29 141
22 TraesCS2A01G190200 chr4D 87.379 206 25 1 236 440 417363142 417362937 6.560000e-58 235
23 TraesCS2A01G190200 chr4D 84.729 203 29 2 236 437 374627183 374626982 6.650000e-48 202
24 TraesCS2A01G190200 chr4D 83.902 205 29 4 236 438 20045258 20045056 4.000000e-45 193
25 TraesCS2A01G190200 chr7B 95.420 131 4 2 3295 3425 150701622 150701750 1.430000e-49 207
26 TraesCS2A01G190200 chr6B 95.312 128 6 0 3298 3425 54403662 54403535 1.850000e-48 204
27 TraesCS2A01G190200 chr4B 94.656 131 6 1 3295 3425 99437045 99436916 6.650000e-48 202
28 TraesCS2A01G190200 chr1D 94.656 131 5 2 3295 3425 264129249 264129121 6.650000e-48 202
29 TraesCS2A01G190200 chr5B 93.333 135 9 0 3299 3433 70794210 70794344 2.390000e-47 200
30 TraesCS2A01G190200 chr5B 81.517 211 37 2 236 445 578825739 578825948 5.220000e-39 172
31 TraesCS2A01G190200 chr1A 81.905 210 36 2 230 437 179550242 179550451 4.030000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G190200 chr2A 156665812 156669737 3925 False 7251.000000 7251 100.000 1 3926 1 chr2A.!!$F1 3925
1 TraesCS2A01G190200 chr2D 145361220 145364526 3306 True 1480.333333 2172 91.251 459 3910 3 chr2D.!!$R2 3451
2 TraesCS2A01G190200 chr2B 202918340 202921882 3542 True 1337.000000 1796 89.930 611 3904 3 chr2B.!!$R2 3293
3 TraesCS2A01G190200 chr1B 626308687 626309277 590 False 577.000000 577 84.360 1114 1741 1 chr1B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.035317 TGACAGCTGGCATTTCTCGT 59.965 50.0 21.2 0.0 0.00 4.18 F
198 199 0.178885 TGGCCCAGTTACACCTACCT 60.179 55.0 0.0 0.0 0.00 3.08 F
1651 1690 0.107017 TGCTAATTGCTGCCTCTCCC 60.107 55.0 0.0 0.0 43.37 4.30 F
2102 2155 0.250727 GGGGTAGAACAGCAGCACAA 60.251 55.0 0.0 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1198 1.376037 CACCTTCTTCACGGAGCCC 60.376 63.158 0.00 0.0 0.0 5.19 R
2122 2216 0.458543 CGGGTCGGTGTTCAGATCAG 60.459 60.000 0.00 0.0 0.0 2.90 R
2494 2596 0.036952 CAGTCCAACAGGCTCGTGAT 60.037 55.000 0.00 0.0 0.0 3.06 R
3714 4126 0.108615 CGTCTCCAGCTGATTTCGGT 60.109 55.000 17.39 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.822192 CACCTCATCCGTCGCCGA 61.822 66.667 0.00 0.00 35.63 5.54
18 19 3.823330 ACCTCATCCGTCGCCGAC 61.823 66.667 7.29 7.29 35.63 4.79
28 29 2.730604 TCGCCGACGACCGAAAAC 60.731 61.111 7.87 0.00 45.12 2.43
29 30 4.112256 CGCCGACGACCGAAAACG 62.112 66.667 0.00 0.00 43.93 3.60
30 31 4.419957 GCCGACGACCGAAAACGC 62.420 66.667 0.00 0.00 41.76 4.84
31 32 3.770424 CCGACGACCGAAAACGCC 61.770 66.667 0.00 0.00 41.76 5.68
32 33 4.112256 CGACGACCGAAAACGCCG 62.112 66.667 0.00 0.00 41.76 6.46
52 53 4.796495 GCCCGCCCGACCAAGAAT 62.796 66.667 0.00 0.00 0.00 2.40
53 54 2.824041 CCCGCCCGACCAAGAATG 60.824 66.667 0.00 0.00 0.00 2.67
54 55 2.267642 CCGCCCGACCAAGAATGA 59.732 61.111 0.00 0.00 0.00 2.57
55 56 1.153168 CCGCCCGACCAAGAATGAT 60.153 57.895 0.00 0.00 0.00 2.45
56 57 0.748005 CCGCCCGACCAAGAATGATT 60.748 55.000 0.00 0.00 0.00 2.57
57 58 0.378257 CGCCCGACCAAGAATGATTG 59.622 55.000 0.00 0.00 0.00 2.67
58 59 1.463674 GCCCGACCAAGAATGATTGT 58.536 50.000 0.00 0.00 0.00 2.71
59 60 1.818674 GCCCGACCAAGAATGATTGTT 59.181 47.619 0.00 0.00 0.00 2.83
60 61 2.415893 GCCCGACCAAGAATGATTGTTG 60.416 50.000 7.97 7.97 34.04 3.33
61 62 2.819608 CCCGACCAAGAATGATTGTTGT 59.180 45.455 13.09 2.85 32.50 3.32
62 63 3.119849 CCCGACCAAGAATGATTGTTGTC 60.120 47.826 13.09 9.75 32.50 3.18
63 64 3.501828 CCGACCAAGAATGATTGTTGTCA 59.498 43.478 13.09 0.00 32.50 3.58
64 65 4.156556 CCGACCAAGAATGATTGTTGTCAT 59.843 41.667 13.09 0.00 40.44 3.06
66 67 6.128035 CCGACCAAGAATGATTGTTGTCATTA 60.128 38.462 13.09 0.00 46.02 1.90
67 68 7.415541 CCGACCAAGAATGATTGTTGTCATTAT 60.416 37.037 13.09 0.00 46.02 1.28
68 69 7.430211 CGACCAAGAATGATTGTTGTCATTATG 59.570 37.037 13.09 5.42 46.02 1.90
69 70 8.352137 ACCAAGAATGATTGTTGTCATTATGA 57.648 30.769 13.09 0.00 46.02 2.15
70 71 8.246180 ACCAAGAATGATTGTTGTCATTATGAC 58.754 33.333 17.57 17.57 46.02 3.06
81 82 4.644103 GTCATTATGACAGCTGGCATTT 57.356 40.909 38.71 23.92 42.08 2.32
82 83 4.604976 GTCATTATGACAGCTGGCATTTC 58.395 43.478 38.71 20.07 42.08 2.17
83 84 4.337555 GTCATTATGACAGCTGGCATTTCT 59.662 41.667 38.71 19.57 42.08 2.52
84 85 4.577693 TCATTATGACAGCTGGCATTTCTC 59.422 41.667 38.71 15.49 42.08 2.87
85 86 1.376543 ATGACAGCTGGCATTTCTCG 58.623 50.000 29.93 0.00 42.08 4.04
86 87 0.035317 TGACAGCTGGCATTTCTCGT 59.965 50.000 21.20 0.00 0.00 4.18
87 88 1.160137 GACAGCTGGCATTTCTCGTT 58.840 50.000 16.81 0.00 0.00 3.85
88 89 1.537202 GACAGCTGGCATTTCTCGTTT 59.463 47.619 16.81 0.00 0.00 3.60
89 90 1.537202 ACAGCTGGCATTTCTCGTTTC 59.463 47.619 19.93 0.00 0.00 2.78
90 91 1.536766 CAGCTGGCATTTCTCGTTTCA 59.463 47.619 5.57 0.00 0.00 2.69
91 92 1.808945 AGCTGGCATTTCTCGTTTCAG 59.191 47.619 0.00 0.00 0.00 3.02
92 93 1.135575 GCTGGCATTTCTCGTTTCAGG 60.136 52.381 0.00 0.00 0.00 3.86
93 94 1.470098 CTGGCATTTCTCGTTTCAGGG 59.530 52.381 0.00 0.00 0.00 4.45
94 95 0.811281 GGCATTTCTCGTTTCAGGGG 59.189 55.000 0.00 0.00 0.00 4.79
95 96 1.613255 GGCATTTCTCGTTTCAGGGGA 60.613 52.381 0.00 0.00 0.00 4.81
96 97 2.369394 GCATTTCTCGTTTCAGGGGAT 58.631 47.619 0.00 0.00 0.00 3.85
97 98 2.098117 GCATTTCTCGTTTCAGGGGATG 59.902 50.000 0.00 0.00 0.00 3.51
98 99 2.489938 TTTCTCGTTTCAGGGGATGG 57.510 50.000 0.00 0.00 0.00 3.51
99 100 1.651737 TTCTCGTTTCAGGGGATGGA 58.348 50.000 0.00 0.00 0.00 3.41
100 101 1.651737 TCTCGTTTCAGGGGATGGAA 58.348 50.000 0.00 0.00 0.00 3.53
101 102 2.196595 TCTCGTTTCAGGGGATGGAAT 58.803 47.619 0.00 0.00 0.00 3.01
102 103 2.576191 TCTCGTTTCAGGGGATGGAATT 59.424 45.455 0.00 0.00 0.00 2.17
103 104 3.010138 TCTCGTTTCAGGGGATGGAATTT 59.990 43.478 0.00 0.00 0.00 1.82
104 105 3.352648 TCGTTTCAGGGGATGGAATTTC 58.647 45.455 0.00 0.00 0.00 2.17
105 106 2.427095 CGTTTCAGGGGATGGAATTTCC 59.573 50.000 8.59 8.59 36.96 3.13
106 107 3.713003 GTTTCAGGGGATGGAATTTCCT 58.287 45.455 16.25 2.38 37.46 3.36
107 108 4.096681 GTTTCAGGGGATGGAATTTCCTT 58.903 43.478 16.25 10.10 37.46 3.36
108 109 4.418395 TTCAGGGGATGGAATTTCCTTT 57.582 40.909 16.25 4.27 37.46 3.11
109 110 4.418395 TCAGGGGATGGAATTTCCTTTT 57.582 40.909 16.25 1.85 37.46 2.27
110 111 5.544441 TCAGGGGATGGAATTTCCTTTTA 57.456 39.130 16.25 0.00 37.46 1.52
111 112 6.103838 TCAGGGGATGGAATTTCCTTTTAT 57.896 37.500 16.25 1.54 37.46 1.40
112 113 6.511208 TCAGGGGATGGAATTTCCTTTTATT 58.489 36.000 16.25 0.00 37.46 1.40
113 114 6.965272 TCAGGGGATGGAATTTCCTTTTATTT 59.035 34.615 16.25 0.00 37.46 1.40
114 115 7.460722 TCAGGGGATGGAATTTCCTTTTATTTT 59.539 33.333 16.25 0.00 37.46 1.82
115 116 8.108999 CAGGGGATGGAATTTCCTTTTATTTTT 58.891 33.333 16.25 0.00 37.46 1.94
142 143 3.582743 CGAAGGGATTACGGTAGCC 57.417 57.895 0.00 1.70 0.00 3.93
160 161 2.757099 GGGCCGTCCCGAAGTCTA 60.757 66.667 0.00 0.00 43.94 2.59
161 162 2.353610 GGGCCGTCCCGAAGTCTAA 61.354 63.158 0.00 0.00 43.94 2.10
162 163 1.153686 GGCCGTCCCGAAGTCTAAC 60.154 63.158 0.00 0.00 0.00 2.34
163 164 1.588082 GCCGTCCCGAAGTCTAACA 59.412 57.895 0.00 0.00 0.00 2.41
164 165 0.735287 GCCGTCCCGAAGTCTAACAC 60.735 60.000 0.00 0.00 0.00 3.32
165 166 0.455633 CCGTCCCGAAGTCTAACACG 60.456 60.000 0.00 0.00 0.00 4.49
166 167 0.455633 CGTCCCGAAGTCTAACACGG 60.456 60.000 0.00 0.00 44.16 4.94
167 168 0.735287 GTCCCGAAGTCTAACACGGC 60.735 60.000 0.00 0.00 43.37 5.68
168 169 1.180456 TCCCGAAGTCTAACACGGCA 61.180 55.000 0.00 0.00 43.37 5.69
169 170 0.320073 CCCGAAGTCTAACACGGCAA 60.320 55.000 0.00 0.00 43.37 4.52
170 171 0.788391 CCGAAGTCTAACACGGCAAC 59.212 55.000 0.00 0.00 38.98 4.17
171 172 1.493772 CGAAGTCTAACACGGCAACA 58.506 50.000 0.00 0.00 0.00 3.33
172 173 1.191647 CGAAGTCTAACACGGCAACAC 59.808 52.381 0.00 0.00 0.00 3.32
173 174 1.529865 GAAGTCTAACACGGCAACACC 59.470 52.381 0.00 0.00 0.00 4.16
174 175 0.250166 AGTCTAACACGGCAACACCC 60.250 55.000 0.00 0.00 33.26 4.61
175 176 0.250166 GTCTAACACGGCAACACCCT 60.250 55.000 0.00 0.00 33.26 4.34
176 177 0.250124 TCTAACACGGCAACACCCTG 60.250 55.000 0.00 0.00 33.26 4.45
177 178 1.852067 CTAACACGGCAACACCCTGC 61.852 60.000 0.00 0.00 41.85 4.85
178 179 2.610532 TAACACGGCAACACCCTGCA 62.611 55.000 0.00 0.00 44.52 4.41
179 180 2.985282 CACGGCAACACCCTGCAT 60.985 61.111 0.00 0.00 44.52 3.96
180 181 2.985282 ACGGCAACACCCTGCATG 60.985 61.111 0.00 0.00 44.52 4.06
181 182 3.751246 CGGCAACACCCTGCATGG 61.751 66.667 6.46 6.46 44.52 3.66
182 183 4.073200 GGCAACACCCTGCATGGC 62.073 66.667 8.09 0.21 44.52 4.40
183 184 4.073200 GCAACACCCTGCATGGCC 62.073 66.667 8.09 0.00 42.17 5.36
184 185 3.384532 CAACACCCTGCATGGCCC 61.385 66.667 8.09 0.00 0.00 5.80
185 186 3.913445 AACACCCTGCATGGCCCA 61.913 61.111 8.09 0.00 0.00 5.36
186 187 3.892104 AACACCCTGCATGGCCCAG 62.892 63.158 8.09 0.00 0.00 4.45
187 188 4.371417 CACCCTGCATGGCCCAGT 62.371 66.667 8.09 0.00 0.00 4.00
188 189 3.593680 ACCCTGCATGGCCCAGTT 61.594 61.111 8.09 0.00 0.00 3.16
189 190 2.237965 ACCCTGCATGGCCCAGTTA 61.238 57.895 8.09 0.00 0.00 2.24
190 191 1.754234 CCCTGCATGGCCCAGTTAC 60.754 63.158 0.00 0.00 0.00 2.50
191 192 1.001020 CCTGCATGGCCCAGTTACA 60.001 57.895 0.00 0.00 0.00 2.41
192 193 1.315257 CCTGCATGGCCCAGTTACAC 61.315 60.000 0.00 0.00 0.00 2.90
193 194 1.304052 TGCATGGCCCAGTTACACC 60.304 57.895 0.00 0.00 0.00 4.16
194 195 1.000896 GCATGGCCCAGTTACACCT 60.001 57.895 0.00 0.00 0.00 4.00
195 196 0.254747 GCATGGCCCAGTTACACCTA 59.745 55.000 0.00 0.00 0.00 3.08
196 197 2.017113 GCATGGCCCAGTTACACCTAC 61.017 57.143 0.00 0.00 0.00 3.18
197 198 0.916809 ATGGCCCAGTTACACCTACC 59.083 55.000 0.00 0.00 0.00 3.18
198 199 0.178885 TGGCCCAGTTACACCTACCT 60.179 55.000 0.00 0.00 0.00 3.08
199 200 0.540454 GGCCCAGTTACACCTACCTC 59.460 60.000 0.00 0.00 0.00 3.85
200 201 1.272807 GCCCAGTTACACCTACCTCA 58.727 55.000 0.00 0.00 0.00 3.86
201 202 1.207329 GCCCAGTTACACCTACCTCAG 59.793 57.143 0.00 0.00 0.00 3.35
202 203 2.537143 CCCAGTTACACCTACCTCAGT 58.463 52.381 0.00 0.00 0.00 3.41
203 204 3.705051 CCCAGTTACACCTACCTCAGTA 58.295 50.000 0.00 0.00 0.00 2.74
204 205 3.700038 CCCAGTTACACCTACCTCAGTAG 59.300 52.174 0.00 0.00 44.85 2.57
217 218 2.541466 CTCAGTAGGACCCTTCCAAGT 58.459 52.381 0.00 0.00 45.72 3.16
218 219 2.234908 CTCAGTAGGACCCTTCCAAGTG 59.765 54.545 0.00 0.00 45.72 3.16
219 220 2.158219 TCAGTAGGACCCTTCCAAGTGA 60.158 50.000 0.00 0.00 45.72 3.41
220 221 2.637872 CAGTAGGACCCTTCCAAGTGAA 59.362 50.000 0.00 0.00 45.72 3.18
221 222 3.264450 CAGTAGGACCCTTCCAAGTGAAT 59.736 47.826 0.00 0.00 45.72 2.57
222 223 3.916989 AGTAGGACCCTTCCAAGTGAATT 59.083 43.478 0.00 0.00 45.72 2.17
223 224 3.160679 AGGACCCTTCCAAGTGAATTG 57.839 47.619 0.00 0.00 45.72 2.32
236 237 6.698008 CAAGTGAATTGGCTACCATAATGA 57.302 37.500 0.00 0.00 35.08 2.57
237 238 6.732154 CAAGTGAATTGGCTACCATAATGAG 58.268 40.000 0.00 0.00 35.08 2.90
238 239 6.252599 AGTGAATTGGCTACCATAATGAGA 57.747 37.500 0.00 0.00 31.53 3.27
239 240 6.845908 AGTGAATTGGCTACCATAATGAGAT 58.154 36.000 0.00 0.00 31.53 2.75
240 241 7.977818 AGTGAATTGGCTACCATAATGAGATA 58.022 34.615 0.00 0.00 31.53 1.98
241 242 8.439971 AGTGAATTGGCTACCATAATGAGATAA 58.560 33.333 0.00 0.00 31.53 1.75
242 243 9.066892 GTGAATTGGCTACCATAATGAGATAAA 57.933 33.333 0.00 0.00 31.53 1.40
243 244 9.066892 TGAATTGGCTACCATAATGAGATAAAC 57.933 33.333 0.00 0.00 31.53 2.01
244 245 8.409358 AATTGGCTACCATAATGAGATAAACC 57.591 34.615 0.00 0.00 31.53 3.27
245 246 6.763715 TGGCTACCATAATGAGATAAACCT 57.236 37.500 0.00 0.00 0.00 3.50
246 247 7.149202 TGGCTACCATAATGAGATAAACCTT 57.851 36.000 0.00 0.00 0.00 3.50
247 248 8.270137 TGGCTACCATAATGAGATAAACCTTA 57.730 34.615 0.00 0.00 0.00 2.69
248 249 8.719596 TGGCTACCATAATGAGATAAACCTTAA 58.280 33.333 0.00 0.00 0.00 1.85
249 250 9.569122 GGCTACCATAATGAGATAAACCTTAAA 57.431 33.333 0.00 0.00 0.00 1.52
252 253 8.465273 ACCATAATGAGATAAACCTTAAAGCC 57.535 34.615 0.00 0.00 0.00 4.35
253 254 8.282256 ACCATAATGAGATAAACCTTAAAGCCT 58.718 33.333 0.00 0.00 0.00 4.58
254 255 8.787852 CCATAATGAGATAAACCTTAAAGCCTC 58.212 37.037 0.00 0.00 0.00 4.70
255 256 9.566432 CATAATGAGATAAACCTTAAAGCCTCT 57.434 33.333 0.00 0.00 0.00 3.69
257 258 8.885693 AATGAGATAAACCTTAAAGCCTCTTT 57.114 30.769 0.00 0.00 0.00 2.52
258 259 8.885693 ATGAGATAAACCTTAAAGCCTCTTTT 57.114 30.769 0.00 0.00 0.00 2.27
259 260 8.706322 TGAGATAAACCTTAAAGCCTCTTTTT 57.294 30.769 0.00 0.00 0.00 1.94
282 283 7.964604 TTTCCGGTGTAATTTTATTTTTGGG 57.035 32.000 0.00 0.00 0.00 4.12
283 284 6.912951 TCCGGTGTAATTTTATTTTTGGGA 57.087 33.333 0.00 0.00 0.00 4.37
284 285 6.926313 TCCGGTGTAATTTTATTTTTGGGAG 58.074 36.000 0.00 0.00 0.00 4.30
285 286 6.494146 TCCGGTGTAATTTTATTTTTGGGAGT 59.506 34.615 0.00 0.00 0.00 3.85
286 287 7.015389 TCCGGTGTAATTTTATTTTTGGGAGTT 59.985 33.333 0.00 0.00 0.00 3.01
287 288 7.117092 CCGGTGTAATTTTATTTTTGGGAGTTG 59.883 37.037 0.00 0.00 0.00 3.16
288 289 7.654116 CGGTGTAATTTTATTTTTGGGAGTTGT 59.346 33.333 0.00 0.00 0.00 3.32
289 290 8.769891 GGTGTAATTTTATTTTTGGGAGTTGTG 58.230 33.333 0.00 0.00 0.00 3.33
290 291 8.279800 GTGTAATTTTATTTTTGGGAGTTGTGC 58.720 33.333 0.00 0.00 0.00 4.57
291 292 8.207545 TGTAATTTTATTTTTGGGAGTTGTGCT 58.792 29.630 0.00 0.00 0.00 4.40
292 293 7.495135 AATTTTATTTTTGGGAGTTGTGCTG 57.505 32.000 0.00 0.00 0.00 4.41
293 294 5.606348 TTTATTTTTGGGAGTTGTGCTGT 57.394 34.783 0.00 0.00 0.00 4.40
294 295 5.606348 TTATTTTTGGGAGTTGTGCTGTT 57.394 34.783 0.00 0.00 0.00 3.16
295 296 6.716934 TTATTTTTGGGAGTTGTGCTGTTA 57.283 33.333 0.00 0.00 0.00 2.41
296 297 5.606348 ATTTTTGGGAGTTGTGCTGTTAA 57.394 34.783 0.00 0.00 0.00 2.01
297 298 5.606348 TTTTTGGGAGTTGTGCTGTTAAT 57.394 34.783 0.00 0.00 0.00 1.40
298 299 5.606348 TTTTGGGAGTTGTGCTGTTAATT 57.394 34.783 0.00 0.00 0.00 1.40
299 300 6.716934 TTTTGGGAGTTGTGCTGTTAATTA 57.283 33.333 0.00 0.00 0.00 1.40
300 301 6.909550 TTTGGGAGTTGTGCTGTTAATTAT 57.090 33.333 0.00 0.00 0.00 1.28
301 302 5.895636 TGGGAGTTGTGCTGTTAATTATG 57.104 39.130 0.00 0.00 0.00 1.90
302 303 5.565509 TGGGAGTTGTGCTGTTAATTATGA 58.434 37.500 0.00 0.00 0.00 2.15
303 304 6.007076 TGGGAGTTGTGCTGTTAATTATGAA 58.993 36.000 0.00 0.00 0.00 2.57
304 305 6.150976 TGGGAGTTGTGCTGTTAATTATGAAG 59.849 38.462 0.00 0.00 0.00 3.02
305 306 6.030228 GGAGTTGTGCTGTTAATTATGAAGC 58.970 40.000 7.33 7.33 0.00 3.86
306 307 6.349280 GGAGTTGTGCTGTTAATTATGAAGCA 60.349 38.462 11.25 11.25 41.36 3.91
312 313 7.864108 TGCTGTTAATTATGAAGCACATAGT 57.136 32.000 11.25 0.12 41.64 2.12
313 314 7.919690 TGCTGTTAATTATGAAGCACATAGTC 58.080 34.615 11.25 0.00 41.64 2.59
314 315 7.770433 TGCTGTTAATTATGAAGCACATAGTCT 59.230 33.333 11.25 0.00 41.64 3.24
315 316 9.261180 GCTGTTAATTATGAAGCACATAGTCTA 57.739 33.333 8.79 0.00 41.64 2.59
321 322 9.890629 AATTATGAAGCACATAGTCTAGTTTGA 57.109 29.630 4.36 0.00 41.64 2.69
323 324 9.890629 TTATGAAGCACATAGTCTAGTTTGATT 57.109 29.630 4.36 0.00 41.64 2.57
324 325 8.798859 ATGAAGCACATAGTCTAGTTTGATTT 57.201 30.769 0.00 0.00 37.46 2.17
325 326 8.621532 TGAAGCACATAGTCTAGTTTGATTTT 57.378 30.769 0.00 0.00 0.00 1.82
326 327 8.721478 TGAAGCACATAGTCTAGTTTGATTTTC 58.279 33.333 0.00 0.00 0.00 2.29
327 328 8.854614 AAGCACATAGTCTAGTTTGATTTTCT 57.145 30.769 0.00 0.00 0.00 2.52
328 329 8.854614 AGCACATAGTCTAGTTTGATTTTCTT 57.145 30.769 0.00 0.00 0.00 2.52
329 330 9.289782 AGCACATAGTCTAGTTTGATTTTCTTT 57.710 29.630 0.00 0.00 0.00 2.52
330 331 9.899226 GCACATAGTCTAGTTTGATTTTCTTTT 57.101 29.630 0.00 0.00 0.00 2.27
339 340 9.833182 CTAGTTTGATTTTCTTTTTCTAGAGGC 57.167 33.333 0.00 0.00 0.00 4.70
340 341 7.661968 AGTTTGATTTTCTTTTTCTAGAGGCC 58.338 34.615 0.00 0.00 0.00 5.19
341 342 6.590234 TTGATTTTCTTTTTCTAGAGGCCC 57.410 37.500 0.00 0.00 0.00 5.80
342 343 5.892348 TGATTTTCTTTTTCTAGAGGCCCT 58.108 37.500 0.00 0.00 0.00 5.19
343 344 5.711976 TGATTTTCTTTTTCTAGAGGCCCTG 59.288 40.000 0.00 0.00 0.00 4.45
344 345 4.993705 TTTCTTTTTCTAGAGGCCCTGA 57.006 40.909 0.00 0.00 0.00 3.86
345 346 5.520748 TTTCTTTTTCTAGAGGCCCTGAT 57.479 39.130 0.00 0.00 0.00 2.90
346 347 4.762289 TCTTTTTCTAGAGGCCCTGATC 57.238 45.455 0.00 0.00 0.00 2.92
347 348 3.133003 TCTTTTTCTAGAGGCCCTGATCG 59.867 47.826 0.00 0.00 0.00 3.69
348 349 0.753262 TTTCTAGAGGCCCTGATCGC 59.247 55.000 0.00 0.00 0.00 4.58
354 355 2.124151 GGCCCTGATCGCCATGTT 60.124 61.111 5.33 0.00 46.27 2.71
355 356 1.754234 GGCCCTGATCGCCATGTTT 60.754 57.895 5.33 0.00 46.27 2.83
356 357 1.434696 GCCCTGATCGCCATGTTTG 59.565 57.895 0.00 0.00 0.00 2.93
357 358 2.008268 GCCCTGATCGCCATGTTTGG 62.008 60.000 0.00 0.00 46.66 3.28
358 359 0.680921 CCCTGATCGCCATGTTTGGT 60.681 55.000 0.00 0.00 45.57 3.67
359 360 1.176527 CCTGATCGCCATGTTTGGTT 58.823 50.000 0.00 0.00 45.57 3.67
360 361 1.545582 CCTGATCGCCATGTTTGGTTT 59.454 47.619 0.00 0.00 45.57 3.27
361 362 2.598589 CTGATCGCCATGTTTGGTTTG 58.401 47.619 0.00 0.00 45.57 2.93
362 363 1.271934 TGATCGCCATGTTTGGTTTGG 59.728 47.619 0.00 0.00 45.57 3.28
363 364 1.272212 GATCGCCATGTTTGGTTTGGT 59.728 47.619 0.00 0.00 45.57 3.67
364 365 0.671251 TCGCCATGTTTGGTTTGGTC 59.329 50.000 0.00 0.00 45.57 4.02
365 366 0.673437 CGCCATGTTTGGTTTGGTCT 59.327 50.000 0.00 0.00 45.57 3.85
366 367 1.602668 CGCCATGTTTGGTTTGGTCTG 60.603 52.381 0.00 0.00 45.57 3.51
367 368 1.412343 GCCATGTTTGGTTTGGTCTGT 59.588 47.619 0.00 0.00 45.57 3.41
368 369 2.545742 GCCATGTTTGGTTTGGTCTGTC 60.546 50.000 0.00 0.00 45.57 3.51
369 370 2.035832 CCATGTTTGGTTTGGTCTGTCC 59.964 50.000 0.00 0.00 38.30 4.02
370 371 1.770294 TGTTTGGTTTGGTCTGTCCC 58.230 50.000 0.00 0.00 34.77 4.46
371 372 1.006043 TGTTTGGTTTGGTCTGTCCCA 59.994 47.619 0.00 0.00 34.77 4.37
372 373 2.316108 GTTTGGTTTGGTCTGTCCCAT 58.684 47.619 0.00 0.00 33.60 4.00
373 374 1.993956 TTGGTTTGGTCTGTCCCATG 58.006 50.000 0.00 0.00 33.60 3.66
374 375 1.144691 TGGTTTGGTCTGTCCCATGA 58.855 50.000 0.00 0.00 33.60 3.07
375 376 1.202879 TGGTTTGGTCTGTCCCATGAC 60.203 52.381 0.00 0.00 42.12 3.06
381 382 2.859165 GTCTGTCCCATGACCAAAGA 57.141 50.000 0.00 0.00 41.01 2.52
382 383 2.427506 GTCTGTCCCATGACCAAAGAC 58.572 52.381 0.00 0.00 41.01 3.01
383 384 1.001974 TCTGTCCCATGACCAAAGACG 59.998 52.381 0.00 0.00 41.01 4.18
384 385 0.605319 TGTCCCATGACCAAAGACGC 60.605 55.000 0.00 0.00 41.01 5.19
385 386 0.605319 GTCCCATGACCAAAGACGCA 60.605 55.000 0.00 0.00 35.34 5.24
386 387 0.327924 TCCCATGACCAAAGACGCAT 59.672 50.000 0.00 0.00 0.00 4.73
387 388 0.734889 CCCATGACCAAAGACGCATC 59.265 55.000 0.00 0.00 0.00 3.91
388 389 0.734889 CCATGACCAAAGACGCATCC 59.265 55.000 0.00 0.00 0.00 3.51
389 390 1.679944 CCATGACCAAAGACGCATCCT 60.680 52.381 0.00 0.00 0.00 3.24
390 391 2.419990 CCATGACCAAAGACGCATCCTA 60.420 50.000 0.00 0.00 0.00 2.94
391 392 2.380084 TGACCAAAGACGCATCCTAC 57.620 50.000 0.00 0.00 0.00 3.18
392 393 1.621317 TGACCAAAGACGCATCCTACA 59.379 47.619 0.00 0.00 0.00 2.74
393 394 2.236146 TGACCAAAGACGCATCCTACAT 59.764 45.455 0.00 0.00 0.00 2.29
394 395 2.866762 GACCAAAGACGCATCCTACATC 59.133 50.000 0.00 0.00 0.00 3.06
395 396 2.236146 ACCAAAGACGCATCCTACATCA 59.764 45.455 0.00 0.00 0.00 3.07
396 397 3.118261 ACCAAAGACGCATCCTACATCAT 60.118 43.478 0.00 0.00 0.00 2.45
397 398 3.249320 CCAAAGACGCATCCTACATCATG 59.751 47.826 0.00 0.00 0.00 3.07
398 399 3.827008 AAGACGCATCCTACATCATGT 57.173 42.857 0.00 0.00 0.00 3.21
399 400 3.103447 AGACGCATCCTACATCATGTG 57.897 47.619 0.00 0.00 36.71 3.21
400 401 2.695147 AGACGCATCCTACATCATGTGA 59.305 45.455 0.00 0.00 35.03 3.58
401 402 3.132824 AGACGCATCCTACATCATGTGAA 59.867 43.478 0.00 0.00 35.03 3.18
402 403 3.871006 GACGCATCCTACATCATGTGAAA 59.129 43.478 0.00 0.00 35.03 2.69
403 404 4.454678 ACGCATCCTACATCATGTGAAAT 58.545 39.130 0.00 0.00 35.03 2.17
404 405 5.610398 ACGCATCCTACATCATGTGAAATA 58.390 37.500 0.00 0.00 35.03 1.40
405 406 6.233434 ACGCATCCTACATCATGTGAAATAT 58.767 36.000 0.00 0.00 35.03 1.28
406 407 6.148315 ACGCATCCTACATCATGTGAAATATG 59.852 38.462 0.00 0.00 36.70 1.78
454 455 3.297830 AAAAGCGAATTGGCTACAACC 57.702 42.857 15.79 0.00 43.93 3.77
455 456 1.173913 AAGCGAATTGGCTACAACCC 58.826 50.000 15.79 0.00 43.93 4.11
456 457 0.679960 AGCGAATTGGCTACAACCCC 60.680 55.000 13.82 0.00 42.62 4.95
457 458 0.679960 GCGAATTGGCTACAACCCCT 60.680 55.000 5.04 0.00 39.87 4.79
458 459 1.407712 GCGAATTGGCTACAACCCCTA 60.408 52.381 5.04 0.00 39.87 3.53
459 460 2.942306 GCGAATTGGCTACAACCCCTAA 60.942 50.000 5.04 0.00 39.87 2.69
460 461 3.349022 CGAATTGGCTACAACCCCTAAA 58.651 45.455 0.00 0.00 39.87 1.85
461 462 3.759618 CGAATTGGCTACAACCCCTAAAA 59.240 43.478 0.00 0.00 39.87 1.52
462 463 4.218852 CGAATTGGCTACAACCCCTAAAAA 59.781 41.667 0.00 0.00 39.87 1.94
485 486 3.698029 CCATTTGGCTACAATCCTTCG 57.302 47.619 0.00 0.00 36.29 3.79
486 487 2.358898 CCATTTGGCTACAATCCTTCGG 59.641 50.000 0.00 0.00 36.29 4.30
510 511 3.401033 AAAGGGCAATTGGCTACAAAC 57.599 42.857 28.63 12.92 44.01 2.93
512 513 1.895131 AGGGCAATTGGCTACAAACTG 59.105 47.619 28.63 0.00 44.01 3.16
514 515 1.618343 GGCAATTGGCTACAAACTGGT 59.382 47.619 23.74 0.00 44.01 4.00
515 516 2.823154 GGCAATTGGCTACAAACTGGTA 59.177 45.455 23.74 0.00 44.01 3.25
516 517 3.119495 GGCAATTGGCTACAAACTGGTAG 60.119 47.826 23.74 0.00 44.01 3.18
521 522 2.762535 GCTACAAACTGGTAGGCAGA 57.237 50.000 0.00 0.00 40.84 4.26
522 523 3.268023 GCTACAAACTGGTAGGCAGAT 57.732 47.619 0.00 0.00 40.84 2.90
523 524 3.610911 GCTACAAACTGGTAGGCAGATT 58.389 45.455 0.00 0.00 40.84 2.40
613 617 4.094442 GGTTTAACAAGTCCGGATCATCAC 59.906 45.833 7.81 0.00 0.00 3.06
617 621 1.208052 CAAGTCCGGATCATCACCAGT 59.792 52.381 7.81 0.00 0.00 4.00
636 640 4.143137 CCAGTGCAGAAACAAACAAACAAC 60.143 41.667 0.00 0.00 0.00 3.32
637 641 3.993736 AGTGCAGAAACAAACAAACAACC 59.006 39.130 0.00 0.00 0.00 3.77
639 643 2.347150 GCAGAAACAAACAAACAACCCG 59.653 45.455 0.00 0.00 0.00 5.28
644 648 1.130938 ACAAACAAACAACCCGTCGAC 59.869 47.619 5.18 5.18 0.00 4.20
817 824 3.175710 GGTCATACCGGCCCCCAT 61.176 66.667 0.00 0.00 0.00 4.00
818 825 1.844289 GGTCATACCGGCCCCCATA 60.844 63.158 0.00 0.00 0.00 2.74
819 826 1.373812 GTCATACCGGCCCCCATAC 59.626 63.158 0.00 0.00 0.00 2.39
820 827 2.211410 TCATACCGGCCCCCATACG 61.211 63.158 0.00 0.00 0.00 3.06
952 959 1.139058 CACCTCCCCCATATATAGCGC 59.861 57.143 0.00 0.00 0.00 5.92
978 985 0.935366 CGATCGTCCTAAGCTTCGCC 60.935 60.000 0.00 0.00 0.00 5.54
1050 1063 4.039357 CAGCAGCAGCAGCACCAC 62.039 66.667 12.92 0.00 45.49 4.16
1651 1690 0.107017 TGCTAATTGCTGCCTCTCCC 60.107 55.000 0.00 0.00 43.37 4.30
1676 1716 4.204978 GCACAGTTCTTCAATTGTTGAACG 59.795 41.667 25.11 22.63 44.21 3.95
1775 1815 5.096849 ACGCCGTTTCGCATAATTTAATTT 58.903 33.333 0.00 0.00 0.00 1.82
1776 1816 6.256686 ACGCCGTTTCGCATAATTTAATTTA 58.743 32.000 0.00 0.00 0.00 1.40
1949 1989 4.475345 TGTACCTAAACAGGCAATTTGGT 58.525 39.130 0.00 7.79 0.00 3.67
1977 2017 5.178809 GGAAAGTAGCACACGATGTAGTTTT 59.821 40.000 0.00 0.00 0.00 2.43
2095 2148 1.204704 GGCAATTTGGGGTAGAACAGC 59.795 52.381 0.00 0.00 0.00 4.40
2102 2155 0.250727 GGGGTAGAACAGCAGCACAA 60.251 55.000 0.00 0.00 0.00 3.33
2122 2216 5.801947 CACAAAGATGTAGTTTAATGCCTGC 59.198 40.000 0.00 0.00 37.82 4.85
2292 2386 5.141910 GGACCTACTAGGAGGATATATGCC 58.858 50.000 28.85 12.05 37.67 4.40
2323 2417 3.994392 CTGCACCTAGCTTTCGAGTAAAA 59.006 43.478 0.00 0.00 45.94 1.52
2345 2439 1.002468 AGAAACACAACTGATGCACGC 60.002 47.619 0.00 0.00 0.00 5.34
2397 2491 0.457443 CATAGCTGAGTCGCACTCCA 59.543 55.000 11.99 2.73 44.44 3.86
2402 2496 1.919918 CTGAGTCGCACTCCAATCTC 58.080 55.000 11.99 0.00 44.44 2.75
2470 2572 4.147449 TGCCCCGATCGAGCACTG 62.147 66.667 23.37 4.49 0.00 3.66
2501 2603 3.410850 CGTTGCTTTCATGAATCACGAG 58.589 45.455 9.40 4.33 0.00 4.18
2978 3084 6.533723 TCGGATAATGTAGCAGTGTTAACTTG 59.466 38.462 7.22 6.73 32.98 3.16
2982 3088 4.409718 TGTAGCAGTGTTAACTTGTCCA 57.590 40.909 7.22 2.25 32.98 4.02
2983 3089 4.124238 TGTAGCAGTGTTAACTTGTCCAC 58.876 43.478 7.22 0.00 32.98 4.02
2984 3090 2.572290 AGCAGTGTTAACTTGTCCACC 58.428 47.619 7.22 0.00 32.98 4.61
3035 3149 1.291877 ACGACGCTGAGTCCAAATGC 61.292 55.000 5.95 0.00 46.92 3.56
3069 3183 4.456253 CCAGCAAGCAAGCGAGCG 62.456 66.667 6.22 0.00 40.15 5.03
3070 3184 3.417224 CAGCAAGCAAGCGAGCGA 61.417 61.111 0.00 0.00 40.15 4.93
3071 3185 3.117171 AGCAAGCAAGCGAGCGAG 61.117 61.111 0.00 0.00 40.15 5.03
3072 3186 4.808238 GCAAGCAAGCGAGCGAGC 62.808 66.667 6.67 6.67 40.15 5.03
3088 3202 5.376854 AGCGAGCAAAATGTGTAAAGATT 57.623 34.783 0.00 0.00 0.00 2.40
3111 3226 0.527817 ATGGTCTCGACGGAATTCGC 60.528 55.000 0.00 0.00 43.89 4.70
3152 3267 9.632638 ATTCTTATTGTTGCATTCCAGTAGTAT 57.367 29.630 0.00 0.00 0.00 2.12
3153 3268 9.461312 TTCTTATTGTTGCATTCCAGTAGTATT 57.539 29.630 0.00 0.00 0.00 1.89
3161 3282 8.840321 GTTGCATTCCAGTAGTATTACATTGAT 58.160 33.333 0.00 0.00 31.96 2.57
3178 3299 1.271001 TGATAAGGCATCATGGGCTCG 60.271 52.381 9.60 0.00 43.71 5.03
3181 3302 3.589881 GGCATCATGGGCTCGTGC 61.590 66.667 0.00 0.00 38.76 5.34
3236 3357 1.005748 TGAGCCAGCGTGTTCTCTG 60.006 57.895 0.00 0.00 0.00 3.35
3275 3396 8.635983 GCATTTTGTTTCTATTTTTACCGAGAC 58.364 33.333 0.00 0.00 0.00 3.36
3307 3438 3.491104 CGACACTAAATGCTACTCCCTCC 60.491 52.174 0.00 0.00 0.00 4.30
3310 3441 3.105283 ACTAAATGCTACTCCCTCCGTT 58.895 45.455 0.00 0.00 0.00 4.44
3311 3442 2.693267 AAATGCTACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
3322 3453 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3334 3465 6.851609 TCGGAAATACTTGTCATCAAAATGG 58.148 36.000 0.00 0.00 33.42 3.16
3337 3468 7.433131 CGGAAATACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
3348 3479 3.451902 TCAAAATGGATGAAAGGGGATGC 59.548 43.478 0.00 0.00 0.00 3.91
3356 3487 3.845781 TGAAAGGGGATGCATCTAGAC 57.154 47.619 25.28 13.29 0.00 2.59
3357 3488 3.114606 TGAAAGGGGATGCATCTAGACA 58.885 45.455 25.28 14.84 0.00 3.41
3369 3500 9.717942 GGATGCATCTAGACATATTTTAGTTCT 57.282 33.333 25.28 0.00 0.00 3.01
3425 3556 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3426 3557 0.967380 TTTCGGACGGAGGGAGTACC 60.967 60.000 0.00 0.00 40.67 3.34
3448 3579 6.767456 ACCTATTTGCTATGAGGATCTCAAG 58.233 40.000 1.53 3.13 44.04 3.02
3449 3580 6.328672 ACCTATTTGCTATGAGGATCTCAAGT 59.671 38.462 1.53 0.00 44.04 3.16
3450 3581 7.147408 ACCTATTTGCTATGAGGATCTCAAGTT 60.147 37.037 1.53 0.00 44.04 2.66
3451 3582 7.387397 CCTATTTGCTATGAGGATCTCAAGTTC 59.613 40.741 1.53 0.00 44.04 3.01
3452 3583 5.946942 TTGCTATGAGGATCTCAAGTTCT 57.053 39.130 1.53 0.00 44.04 3.01
3453 3584 5.528043 TGCTATGAGGATCTCAAGTTCTC 57.472 43.478 1.53 0.00 44.04 2.87
3454 3585 4.958581 TGCTATGAGGATCTCAAGTTCTCA 59.041 41.667 1.53 0.00 44.04 3.27
3459 3590 4.280929 TGAGGATCTCAAGTTCTCAACGAA 59.719 41.667 0.00 0.00 37.57 3.85
3460 3591 4.815269 AGGATCTCAAGTTCTCAACGAAG 58.185 43.478 0.00 0.00 36.23 3.79
3461 3592 3.369451 GGATCTCAAGTTCTCAACGAAGC 59.631 47.826 0.00 0.00 36.23 3.86
3462 3593 3.452755 TCTCAAGTTCTCAACGAAGCA 57.547 42.857 0.00 0.00 36.23 3.91
3463 3594 3.792401 TCTCAAGTTCTCAACGAAGCAA 58.208 40.909 0.00 0.00 36.23 3.91
3464 3595 3.555956 TCTCAAGTTCTCAACGAAGCAAC 59.444 43.478 0.00 0.00 36.23 4.17
3540 3944 5.540911 CTTGCACCCAACTTGTTCATATTT 58.459 37.500 0.00 0.00 0.00 1.40
3541 3945 5.132897 TGCACCCAACTTGTTCATATTTC 57.867 39.130 0.00 0.00 0.00 2.17
3544 3948 5.631026 CACCCAACTTGTTCATATTTCTCG 58.369 41.667 0.00 0.00 0.00 4.04
3545 3949 5.181245 CACCCAACTTGTTCATATTTCTCGT 59.819 40.000 0.00 0.00 0.00 4.18
3548 3953 7.446013 ACCCAACTTGTTCATATTTCTCGTTTA 59.554 33.333 0.00 0.00 0.00 2.01
3660 4072 5.105473 TGGCTACAAGTGGAGTACAGTTATC 60.105 44.000 0.00 0.00 40.73 1.75
3662 4074 5.392811 GCTACAAGTGGAGTACAGTTATCGT 60.393 44.000 0.00 0.00 40.73 3.73
3697 4109 0.826256 AACCGGCTTCTGGGGAAAAC 60.826 55.000 0.00 0.00 0.00 2.43
3700 4112 0.821711 CGGCTTCTGGGGAAAACACA 60.822 55.000 0.00 0.00 0.00 3.72
3701 4113 0.673985 GGCTTCTGGGGAAAACACAC 59.326 55.000 0.00 0.00 0.00 3.82
3702 4114 1.398692 GCTTCTGGGGAAAACACACA 58.601 50.000 0.00 0.00 0.00 3.72
3703 4115 1.067060 GCTTCTGGGGAAAACACACAC 59.933 52.381 0.00 0.00 0.00 3.82
3704 4116 1.681264 CTTCTGGGGAAAACACACACC 59.319 52.381 0.00 0.00 0.00 4.16
3705 4117 0.923358 TCTGGGGAAAACACACACCT 59.077 50.000 0.00 0.00 0.00 4.00
3707 4119 0.396417 TGGGGAAAACACACACCTGG 60.396 55.000 0.00 0.00 0.00 4.45
3708 4120 0.106419 GGGGAAAACACACACCTGGA 60.106 55.000 0.00 0.00 0.00 3.86
3710 4122 1.613437 GGGAAAACACACACCTGGATG 59.387 52.381 0.00 0.38 0.00 3.51
3711 4123 2.582052 GGAAAACACACACCTGGATGA 58.418 47.619 0.00 0.00 0.00 2.92
3712 4124 3.157087 GGAAAACACACACCTGGATGAT 58.843 45.455 0.00 0.00 0.00 2.45
3713 4125 3.573967 GGAAAACACACACCTGGATGATT 59.426 43.478 0.00 0.00 0.00 2.57
3714 4126 4.764823 GGAAAACACACACCTGGATGATTA 59.235 41.667 0.00 0.00 0.00 1.75
3715 4127 5.335661 GGAAAACACACACCTGGATGATTAC 60.336 44.000 0.00 0.00 0.00 1.89
3716 4128 3.350219 ACACACACCTGGATGATTACC 57.650 47.619 0.00 0.00 0.00 2.85
3717 4129 2.279741 CACACACCTGGATGATTACCG 58.720 52.381 0.00 0.00 0.00 4.02
3829 4245 2.264480 CGTGGGGAGCATGACGAA 59.736 61.111 0.00 0.00 33.64 3.85
3881 4297 4.373116 GCTGTCCGGCGACCTCAA 62.373 66.667 9.30 0.00 38.32 3.02
3905 4321 3.443681 CGTCCAAGGCCACAGAAATAAAT 59.556 43.478 5.01 0.00 0.00 1.40
3910 4326 5.221501 CCAAGGCCACAGAAATAAATATGGG 60.222 44.000 5.01 0.00 0.00 4.00
3911 4327 5.142806 AGGCCACAGAAATAAATATGGGT 57.857 39.130 5.01 0.00 0.00 4.51
3912 4328 4.895297 AGGCCACAGAAATAAATATGGGTG 59.105 41.667 5.01 0.00 0.00 4.61
3913 4329 4.039124 GGCCACAGAAATAAATATGGGTGG 59.961 45.833 0.00 0.00 45.54 4.61
3914 4330 4.649218 GCCACAGAAATAAATATGGGTGGT 59.351 41.667 0.00 0.00 44.80 4.16
3915 4331 5.451798 GCCACAGAAATAAATATGGGTGGTG 60.452 44.000 0.00 0.00 44.80 4.17
3916 4332 5.068987 CCACAGAAATAAATATGGGTGGTGG 59.931 44.000 0.00 0.00 39.65 4.61
3917 4333 5.890985 CACAGAAATAAATATGGGTGGTGGA 59.109 40.000 0.00 0.00 0.00 4.02
3918 4334 6.550854 CACAGAAATAAATATGGGTGGTGGAT 59.449 38.462 0.00 0.00 0.00 3.41
3919 4335 6.550854 ACAGAAATAAATATGGGTGGTGGATG 59.449 38.462 0.00 0.00 0.00 3.51
3920 4336 6.777091 CAGAAATAAATATGGGTGGTGGATGA 59.223 38.462 0.00 0.00 0.00 2.92
3921 4337 7.452501 CAGAAATAAATATGGGTGGTGGATGAT 59.547 37.037 0.00 0.00 0.00 2.45
3922 4338 7.452501 AGAAATAAATATGGGTGGTGGATGATG 59.547 37.037 0.00 0.00 0.00 3.07
3923 4339 3.530928 AATATGGGTGGTGGATGATGG 57.469 47.619 0.00 0.00 0.00 3.51
3924 4340 1.148216 TATGGGTGGTGGATGATGGG 58.852 55.000 0.00 0.00 0.00 4.00
3925 4341 1.658053 ATGGGTGGTGGATGATGGGG 61.658 60.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.730604 GTTTTCGGTCGTCGGCGA 60.731 61.111 8.66 8.66 45.79 5.54
12 13 4.112256 CGTTTTCGGTCGTCGGCG 62.112 66.667 1.15 1.15 39.94 6.46
13 14 4.419957 GCGTTTTCGGTCGTCGGC 62.420 66.667 0.00 0.00 44.29 5.54
14 15 3.770424 GGCGTTTTCGGTCGTCGG 61.770 66.667 0.00 0.00 44.29 4.79
16 17 3.770424 CCGGCGTTTTCGGTCGTC 61.770 66.667 6.01 0.00 44.29 4.20
35 36 4.796495 ATTCTTGGTCGGGCGGGC 62.796 66.667 0.00 0.00 0.00 6.13
36 37 2.608970 ATCATTCTTGGTCGGGCGGG 62.609 60.000 0.00 0.00 0.00 6.13
37 38 0.748005 AATCATTCTTGGTCGGGCGG 60.748 55.000 0.00 0.00 0.00 6.13
38 39 0.378257 CAATCATTCTTGGTCGGGCG 59.622 55.000 0.00 0.00 0.00 6.13
39 40 1.463674 ACAATCATTCTTGGTCGGGC 58.536 50.000 0.00 0.00 0.00 6.13
40 41 2.819608 ACAACAATCATTCTTGGTCGGG 59.180 45.455 0.00 0.00 0.00 5.14
41 42 3.501828 TGACAACAATCATTCTTGGTCGG 59.498 43.478 0.00 0.00 0.00 4.79
42 43 4.747540 TGACAACAATCATTCTTGGTCG 57.252 40.909 0.00 0.00 0.00 4.79
43 44 8.461222 TCATAATGACAACAATCATTCTTGGTC 58.539 33.333 4.34 0.00 44.30 4.02
44 45 8.246180 GTCATAATGACAACAATCATTCTTGGT 58.754 33.333 4.34 0.00 44.30 3.67
45 46 8.624701 GTCATAATGACAACAATCATTCTTGG 57.375 34.615 4.34 0.00 44.30 3.61
61 62 4.529897 AGAAATGCCAGCTGTCATAATGA 58.470 39.130 11.21 0.00 0.00 2.57
62 63 4.554134 CGAGAAATGCCAGCTGTCATAATG 60.554 45.833 11.21 0.00 0.00 1.90
63 64 3.562973 CGAGAAATGCCAGCTGTCATAAT 59.437 43.478 11.21 3.07 0.00 1.28
64 65 2.938451 CGAGAAATGCCAGCTGTCATAA 59.062 45.455 11.21 0.00 0.00 1.90
65 66 2.093500 ACGAGAAATGCCAGCTGTCATA 60.093 45.455 11.21 0.00 0.00 2.15
66 67 1.339438 ACGAGAAATGCCAGCTGTCAT 60.339 47.619 13.81 9.05 0.00 3.06
67 68 0.035317 ACGAGAAATGCCAGCTGTCA 59.965 50.000 13.81 6.39 0.00 3.58
68 69 1.160137 AACGAGAAATGCCAGCTGTC 58.840 50.000 13.81 0.00 0.00 3.51
69 70 1.537202 GAAACGAGAAATGCCAGCTGT 59.463 47.619 13.81 0.00 0.00 4.40
70 71 1.536766 TGAAACGAGAAATGCCAGCTG 59.463 47.619 6.78 6.78 0.00 4.24
71 72 1.808945 CTGAAACGAGAAATGCCAGCT 59.191 47.619 0.00 0.00 0.00 4.24
72 73 1.135575 CCTGAAACGAGAAATGCCAGC 60.136 52.381 0.00 0.00 0.00 4.85
73 74 1.470098 CCCTGAAACGAGAAATGCCAG 59.530 52.381 0.00 0.00 0.00 4.85
74 75 1.533625 CCCTGAAACGAGAAATGCCA 58.466 50.000 0.00 0.00 0.00 4.92
75 76 0.811281 CCCCTGAAACGAGAAATGCC 59.189 55.000 0.00 0.00 0.00 4.40
76 77 1.821216 TCCCCTGAAACGAGAAATGC 58.179 50.000 0.00 0.00 0.00 3.56
77 78 2.684881 CCATCCCCTGAAACGAGAAATG 59.315 50.000 0.00 0.00 0.00 2.32
78 79 2.576191 TCCATCCCCTGAAACGAGAAAT 59.424 45.455 0.00 0.00 0.00 2.17
79 80 1.982226 TCCATCCCCTGAAACGAGAAA 59.018 47.619 0.00 0.00 0.00 2.52
80 81 1.651737 TCCATCCCCTGAAACGAGAA 58.348 50.000 0.00 0.00 0.00 2.87
81 82 1.651737 TTCCATCCCCTGAAACGAGA 58.348 50.000 0.00 0.00 0.00 4.04
82 83 2.717639 ATTCCATCCCCTGAAACGAG 57.282 50.000 0.00 0.00 0.00 4.18
83 84 3.352648 GAAATTCCATCCCCTGAAACGA 58.647 45.455 0.00 0.00 0.00 3.85
84 85 2.427095 GGAAATTCCATCCCCTGAAACG 59.573 50.000 7.23 0.00 36.28 3.60
85 86 3.713003 AGGAAATTCCATCCCCTGAAAC 58.287 45.455 15.21 0.00 39.61 2.78
86 87 4.418395 AAGGAAATTCCATCCCCTGAAA 57.582 40.909 15.21 0.00 39.61 2.69
87 88 4.418395 AAAGGAAATTCCATCCCCTGAA 57.582 40.909 15.21 0.00 39.61 3.02
88 89 4.418395 AAAAGGAAATTCCATCCCCTGA 57.582 40.909 15.21 0.00 39.61 3.86
89 90 6.813293 AATAAAAGGAAATTCCATCCCCTG 57.187 37.500 15.21 0.00 39.61 4.45
90 91 7.829224 AAAATAAAAGGAAATTCCATCCCCT 57.171 32.000 15.21 0.00 39.61 4.79
119 120 2.685850 ACCGTAATCCCTTCGGAAAG 57.314 50.000 9.75 0.00 46.05 2.62
120 121 2.159057 GCTACCGTAATCCCTTCGGAAA 60.159 50.000 9.75 0.00 46.05 3.13
121 122 1.410153 GCTACCGTAATCCCTTCGGAA 59.590 52.381 9.75 0.00 46.05 4.30
122 123 1.035139 GCTACCGTAATCCCTTCGGA 58.965 55.000 9.75 0.00 46.05 4.55
124 125 0.318445 CGGCTACCGTAATCCCTTCG 60.318 60.000 0.00 0.00 42.73 3.79
125 126 0.033090 CCGGCTACCGTAATCCCTTC 59.967 60.000 5.17 0.00 46.80 3.46
126 127 1.405272 CCCGGCTACCGTAATCCCTT 61.405 60.000 5.17 0.00 46.80 3.95
127 128 1.835712 CCCGGCTACCGTAATCCCT 60.836 63.158 5.17 0.00 46.80 4.20
128 129 2.739132 CCCGGCTACCGTAATCCC 59.261 66.667 5.17 0.00 46.80 3.85
129 130 2.030113 GCCCGGCTACCGTAATCC 59.970 66.667 0.71 0.00 46.80 3.01
130 131 2.030113 GGCCCGGCTACCGTAATC 59.970 66.667 9.86 0.00 46.80 1.75
131 132 3.920196 CGGCCCGGCTACCGTAAT 61.920 66.667 17.73 0.00 46.80 1.89
148 149 0.735287 GCCGTGTTAGACTTCGGGAC 60.735 60.000 13.50 0.00 42.71 4.46
149 150 1.180456 TGCCGTGTTAGACTTCGGGA 61.180 55.000 13.50 9.83 42.71 5.14
150 151 0.320073 TTGCCGTGTTAGACTTCGGG 60.320 55.000 13.50 0.00 42.71 5.14
151 152 0.788391 GTTGCCGTGTTAGACTTCGG 59.212 55.000 0.00 0.00 44.86 4.30
152 153 1.191647 GTGTTGCCGTGTTAGACTTCG 59.808 52.381 0.00 0.00 0.00 3.79
153 154 1.529865 GGTGTTGCCGTGTTAGACTTC 59.470 52.381 0.00 0.00 0.00 3.01
154 155 1.589803 GGTGTTGCCGTGTTAGACTT 58.410 50.000 0.00 0.00 0.00 3.01
155 156 0.250166 GGGTGTTGCCGTGTTAGACT 60.250 55.000 0.00 0.00 38.44 3.24
156 157 0.250166 AGGGTGTTGCCGTGTTAGAC 60.250 55.000 0.00 0.00 38.44 2.59
157 158 0.250124 CAGGGTGTTGCCGTGTTAGA 60.250 55.000 0.00 0.00 45.42 2.10
158 159 2.244000 CAGGGTGTTGCCGTGTTAG 58.756 57.895 0.00 0.00 45.42 2.34
159 160 4.466133 CAGGGTGTTGCCGTGTTA 57.534 55.556 0.00 0.00 45.42 2.41
163 164 2.985282 CATGCAGGGTGTTGCCGT 60.985 61.111 0.00 0.00 43.43 5.68
164 165 3.751246 CCATGCAGGGTGTTGCCG 61.751 66.667 9.85 0.00 43.43 5.69
165 166 4.073200 GCCATGCAGGGTGTTGCC 62.073 66.667 20.22 0.00 43.43 4.52
166 167 4.073200 GGCCATGCAGGGTGTTGC 62.073 66.667 20.22 3.40 44.33 4.17
167 168 3.384532 GGGCCATGCAGGGTGTTG 61.385 66.667 20.22 0.00 38.09 3.33
168 169 3.892104 CTGGGCCATGCAGGGTGTT 62.892 63.158 20.22 0.00 38.09 3.32
169 170 4.371417 CTGGGCCATGCAGGGTGT 62.371 66.667 20.22 0.00 38.09 4.16
170 171 2.497792 TAACTGGGCCATGCAGGGTG 62.498 60.000 20.22 9.50 38.09 4.61
171 172 2.237965 TAACTGGGCCATGCAGGGT 61.238 57.895 20.22 0.00 38.09 4.34
172 173 1.754234 GTAACTGGGCCATGCAGGG 60.754 63.158 14.45 14.45 38.09 4.45
173 174 1.001020 TGTAACTGGGCCATGCAGG 60.001 57.895 6.72 0.00 41.84 4.85
174 175 1.315257 GGTGTAACTGGGCCATGCAG 61.315 60.000 6.72 5.37 36.74 4.41
175 176 1.304052 GGTGTAACTGGGCCATGCA 60.304 57.895 6.72 0.00 36.74 3.96
176 177 0.254747 TAGGTGTAACTGGGCCATGC 59.745 55.000 6.72 0.00 36.74 4.06
177 178 1.408266 GGTAGGTGTAACTGGGCCATG 60.408 57.143 6.72 3.79 36.74 3.66
178 179 0.916809 GGTAGGTGTAACTGGGCCAT 59.083 55.000 6.72 0.00 36.74 4.40
179 180 0.178885 AGGTAGGTGTAACTGGGCCA 60.179 55.000 5.85 5.85 36.74 5.36
180 181 0.540454 GAGGTAGGTGTAACTGGGCC 59.460 60.000 0.00 0.00 36.74 5.80
181 182 1.207329 CTGAGGTAGGTGTAACTGGGC 59.793 57.143 0.00 0.00 36.74 5.36
182 183 2.537143 ACTGAGGTAGGTGTAACTGGG 58.463 52.381 0.00 0.00 36.74 4.45
183 184 4.985538 CTACTGAGGTAGGTGTAACTGG 57.014 50.000 0.00 0.00 41.10 4.00
193 194 2.024273 TGGAAGGGTCCTACTGAGGTAG 60.024 54.545 0.00 0.00 45.22 3.18
194 195 2.005350 TGGAAGGGTCCTACTGAGGTA 58.995 52.381 0.00 0.00 45.22 3.08
195 196 0.790993 TGGAAGGGTCCTACTGAGGT 59.209 55.000 0.00 0.00 45.22 3.85
196 197 1.834263 CTTGGAAGGGTCCTACTGAGG 59.166 57.143 0.00 0.00 45.22 3.86
197 198 2.234908 CACTTGGAAGGGTCCTACTGAG 59.765 54.545 0.00 0.00 45.22 3.35
198 199 2.158219 TCACTTGGAAGGGTCCTACTGA 60.158 50.000 0.00 0.00 45.22 3.41
199 200 2.257207 TCACTTGGAAGGGTCCTACTG 58.743 52.381 0.00 0.00 45.22 2.74
200 201 2.715763 TCACTTGGAAGGGTCCTACT 57.284 50.000 0.00 0.00 45.22 2.57
201 202 4.010349 CAATTCACTTGGAAGGGTCCTAC 58.990 47.826 0.00 0.00 45.22 3.18
202 203 4.301072 CAATTCACTTGGAAGGGTCCTA 57.699 45.455 0.00 0.00 45.22 2.94
203 204 3.160679 CAATTCACTTGGAAGGGTCCT 57.839 47.619 0.00 0.00 45.22 3.85
213 214 6.543465 TCTCATTATGGTAGCCAATTCACTTG 59.457 38.462 0.00 0.00 36.95 3.16
214 215 6.662755 TCTCATTATGGTAGCCAATTCACTT 58.337 36.000 0.00 0.00 36.95 3.16
215 216 6.252599 TCTCATTATGGTAGCCAATTCACT 57.747 37.500 0.00 0.00 36.95 3.41
216 217 8.621532 TTATCTCATTATGGTAGCCAATTCAC 57.378 34.615 0.00 0.00 36.95 3.18
217 218 9.066892 GTTTATCTCATTATGGTAGCCAATTCA 57.933 33.333 0.00 0.00 36.95 2.57
218 219 8.515414 GGTTTATCTCATTATGGTAGCCAATTC 58.485 37.037 0.00 0.00 36.95 2.17
219 220 8.227507 AGGTTTATCTCATTATGGTAGCCAATT 58.772 33.333 0.00 0.00 36.95 2.32
220 221 7.759607 AGGTTTATCTCATTATGGTAGCCAAT 58.240 34.615 0.00 0.00 36.95 3.16
221 222 7.149202 AGGTTTATCTCATTATGGTAGCCAA 57.851 36.000 0.00 0.00 36.95 4.52
222 223 6.763715 AGGTTTATCTCATTATGGTAGCCA 57.236 37.500 0.00 0.00 38.19 4.75
223 224 9.569122 TTTAAGGTTTATCTCATTATGGTAGCC 57.431 33.333 0.00 0.00 0.00 3.93
226 227 9.569122 GGCTTTAAGGTTTATCTCATTATGGTA 57.431 33.333 0.00 0.00 0.00 3.25
227 228 8.282256 AGGCTTTAAGGTTTATCTCATTATGGT 58.718 33.333 0.00 0.00 0.00 3.55
228 229 8.697507 AGGCTTTAAGGTTTATCTCATTATGG 57.302 34.615 0.00 0.00 0.00 2.74
229 230 9.566432 AGAGGCTTTAAGGTTTATCTCATTATG 57.434 33.333 0.00 0.00 0.00 1.90
231 232 9.975218 AAAGAGGCTTTAAGGTTTATCTCATTA 57.025 29.630 0.00 0.00 0.00 1.90
232 233 8.885693 AAAGAGGCTTTAAGGTTTATCTCATT 57.114 30.769 0.00 0.00 0.00 2.57
233 234 8.885693 AAAAGAGGCTTTAAGGTTTATCTCAT 57.114 30.769 0.00 0.00 0.00 2.90
234 235 8.706322 AAAAAGAGGCTTTAAGGTTTATCTCA 57.294 30.769 0.00 0.00 0.00 3.27
256 257 8.837389 CCCAAAAATAAAATTACACCGGAAAAA 58.163 29.630 9.46 0.00 0.00 1.94
257 258 8.208903 TCCCAAAAATAAAATTACACCGGAAAA 58.791 29.630 9.46 0.00 0.00 2.29
258 259 7.732996 TCCCAAAAATAAAATTACACCGGAAA 58.267 30.769 9.46 0.00 0.00 3.13
259 260 7.015389 ACTCCCAAAAATAAAATTACACCGGAA 59.985 33.333 9.46 0.00 0.00 4.30
260 261 6.494146 ACTCCCAAAAATAAAATTACACCGGA 59.506 34.615 9.46 0.00 0.00 5.14
261 262 6.693466 ACTCCCAAAAATAAAATTACACCGG 58.307 36.000 0.00 0.00 0.00 5.28
262 263 7.654116 ACAACTCCCAAAAATAAAATTACACCG 59.346 33.333 0.00 0.00 0.00 4.94
263 264 8.769891 CACAACTCCCAAAAATAAAATTACACC 58.230 33.333 0.00 0.00 0.00 4.16
264 265 8.279800 GCACAACTCCCAAAAATAAAATTACAC 58.720 33.333 0.00 0.00 0.00 2.90
265 266 8.207545 AGCACAACTCCCAAAAATAAAATTACA 58.792 29.630 0.00 0.00 0.00 2.41
266 267 8.495148 CAGCACAACTCCCAAAAATAAAATTAC 58.505 33.333 0.00 0.00 0.00 1.89
267 268 8.207545 ACAGCACAACTCCCAAAAATAAAATTA 58.792 29.630 0.00 0.00 0.00 1.40
268 269 7.053498 ACAGCACAACTCCCAAAAATAAAATT 58.947 30.769 0.00 0.00 0.00 1.82
269 270 6.591001 ACAGCACAACTCCCAAAAATAAAAT 58.409 32.000 0.00 0.00 0.00 1.82
270 271 5.983540 ACAGCACAACTCCCAAAAATAAAA 58.016 33.333 0.00 0.00 0.00 1.52
271 272 5.606348 ACAGCACAACTCCCAAAAATAAA 57.394 34.783 0.00 0.00 0.00 1.40
272 273 5.606348 AACAGCACAACTCCCAAAAATAA 57.394 34.783 0.00 0.00 0.00 1.40
273 274 6.716934 TTAACAGCACAACTCCCAAAAATA 57.283 33.333 0.00 0.00 0.00 1.40
274 275 5.606348 TTAACAGCACAACTCCCAAAAAT 57.394 34.783 0.00 0.00 0.00 1.82
275 276 5.606348 ATTAACAGCACAACTCCCAAAAA 57.394 34.783 0.00 0.00 0.00 1.94
276 277 5.606348 AATTAACAGCACAACTCCCAAAA 57.394 34.783 0.00 0.00 0.00 2.44
277 278 6.491745 TCATAATTAACAGCACAACTCCCAAA 59.508 34.615 0.00 0.00 0.00 3.28
278 279 6.007076 TCATAATTAACAGCACAACTCCCAA 58.993 36.000 0.00 0.00 0.00 4.12
279 280 5.565509 TCATAATTAACAGCACAACTCCCA 58.434 37.500 0.00 0.00 0.00 4.37
280 281 6.509418 TTCATAATTAACAGCACAACTCCC 57.491 37.500 0.00 0.00 0.00 4.30
281 282 6.030228 GCTTCATAATTAACAGCACAACTCC 58.970 40.000 8.36 0.00 0.00 3.85
282 283 6.611381 TGCTTCATAATTAACAGCACAACTC 58.389 36.000 10.87 0.00 35.56 3.01
283 284 6.573664 TGCTTCATAATTAACAGCACAACT 57.426 33.333 10.87 0.00 35.56 3.16
288 289 7.770433 AGACTATGTGCTTCATAATTAACAGCA 59.230 33.333 10.87 10.87 38.38 4.41
289 290 8.147642 AGACTATGTGCTTCATAATTAACAGC 57.852 34.615 6.86 6.86 38.38 4.40
295 296 9.890629 TCAAACTAGACTATGTGCTTCATAATT 57.109 29.630 0.00 0.00 38.38 1.40
297 298 9.890629 AATCAAACTAGACTATGTGCTTCATAA 57.109 29.630 0.00 0.00 38.38 1.90
298 299 9.890629 AAATCAAACTAGACTATGTGCTTCATA 57.109 29.630 0.00 0.00 37.91 2.15
299 300 8.798859 AAATCAAACTAGACTATGTGCTTCAT 57.201 30.769 0.00 0.00 40.25 2.57
300 301 8.621532 AAAATCAAACTAGACTATGTGCTTCA 57.378 30.769 0.00 0.00 0.00 3.02
301 302 8.940952 AGAAAATCAAACTAGACTATGTGCTTC 58.059 33.333 0.00 0.00 0.00 3.86
302 303 8.854614 AGAAAATCAAACTAGACTATGTGCTT 57.145 30.769 0.00 0.00 0.00 3.91
303 304 8.854614 AAGAAAATCAAACTAGACTATGTGCT 57.145 30.769 0.00 0.00 0.00 4.40
304 305 9.899226 AAAAGAAAATCAAACTAGACTATGTGC 57.101 29.630 0.00 0.00 0.00 4.57
313 314 9.833182 GCCTCTAGAAAAAGAAAATCAAACTAG 57.167 33.333 0.00 0.00 0.00 2.57
314 315 8.793592 GGCCTCTAGAAAAAGAAAATCAAACTA 58.206 33.333 0.00 0.00 0.00 2.24
315 316 7.255977 GGGCCTCTAGAAAAAGAAAATCAAACT 60.256 37.037 0.84 0.00 0.00 2.66
316 317 6.868864 GGGCCTCTAGAAAAAGAAAATCAAAC 59.131 38.462 0.84 0.00 0.00 2.93
317 318 6.782494 AGGGCCTCTAGAAAAAGAAAATCAAA 59.218 34.615 0.00 0.00 0.00 2.69
318 319 6.209391 CAGGGCCTCTAGAAAAAGAAAATCAA 59.791 38.462 0.95 0.00 0.00 2.57
319 320 5.711976 CAGGGCCTCTAGAAAAAGAAAATCA 59.288 40.000 0.95 0.00 0.00 2.57
320 321 5.946377 TCAGGGCCTCTAGAAAAAGAAAATC 59.054 40.000 0.95 0.00 0.00 2.17
321 322 5.892348 TCAGGGCCTCTAGAAAAAGAAAAT 58.108 37.500 0.95 0.00 0.00 1.82
322 323 5.319043 TCAGGGCCTCTAGAAAAAGAAAA 57.681 39.130 0.95 0.00 0.00 2.29
323 324 4.993705 TCAGGGCCTCTAGAAAAAGAAA 57.006 40.909 0.95 0.00 0.00 2.52
324 325 4.383118 CGATCAGGGCCTCTAGAAAAAGAA 60.383 45.833 0.95 0.00 0.00 2.52
325 326 3.133003 CGATCAGGGCCTCTAGAAAAAGA 59.867 47.826 0.95 0.00 0.00 2.52
326 327 3.462021 CGATCAGGGCCTCTAGAAAAAG 58.538 50.000 0.95 0.00 0.00 2.27
327 328 2.420129 GCGATCAGGGCCTCTAGAAAAA 60.420 50.000 0.95 0.00 0.00 1.94
328 329 1.139058 GCGATCAGGGCCTCTAGAAAA 59.861 52.381 0.95 0.00 0.00 2.29
329 330 0.753262 GCGATCAGGGCCTCTAGAAA 59.247 55.000 0.95 0.00 0.00 2.52
330 331 2.431023 GCGATCAGGGCCTCTAGAA 58.569 57.895 0.95 0.00 0.00 2.10
331 332 4.182744 GCGATCAGGGCCTCTAGA 57.817 61.111 0.95 0.00 0.00 2.43
338 339 1.434696 CAAACATGGCGATCAGGGC 59.565 57.895 0.00 0.00 0.00 5.19
339 340 0.680921 ACCAAACATGGCGATCAGGG 60.681 55.000 0.00 0.00 0.00 4.45
340 341 1.176527 AACCAAACATGGCGATCAGG 58.823 50.000 0.00 0.00 0.00 3.86
341 342 2.598589 CAAACCAAACATGGCGATCAG 58.401 47.619 0.00 0.00 0.00 2.90
342 343 1.271934 CCAAACCAAACATGGCGATCA 59.728 47.619 0.00 0.00 0.00 2.92
343 344 1.272212 ACCAAACCAAACATGGCGATC 59.728 47.619 0.00 0.00 37.77 3.69
344 345 1.272212 GACCAAACCAAACATGGCGAT 59.728 47.619 0.00 0.00 37.77 4.58
345 346 0.671251 GACCAAACCAAACATGGCGA 59.329 50.000 0.00 0.00 37.77 5.54
346 347 0.673437 AGACCAAACCAAACATGGCG 59.327 50.000 0.00 0.00 37.77 5.69
347 348 1.412343 ACAGACCAAACCAAACATGGC 59.588 47.619 0.00 0.00 37.77 4.40
348 349 2.035832 GGACAGACCAAACCAAACATGG 59.964 50.000 0.00 0.00 40.16 3.66
349 350 2.035832 GGGACAGACCAAACCAAACATG 59.964 50.000 0.00 0.00 41.20 3.21
350 351 2.316108 GGGACAGACCAAACCAAACAT 58.684 47.619 0.00 0.00 41.20 2.71
351 352 1.006043 TGGGACAGACCAAACCAAACA 59.994 47.619 0.00 0.00 41.20 2.83
352 353 1.770294 TGGGACAGACCAAACCAAAC 58.230 50.000 0.00 0.00 41.20 2.93
365 366 0.605319 GCGTCTTTGGTCATGGGACA 60.605 55.000 0.00 0.00 46.17 4.02
366 367 0.605319 TGCGTCTTTGGTCATGGGAC 60.605 55.000 0.00 0.00 43.55 4.46
367 368 0.327924 ATGCGTCTTTGGTCATGGGA 59.672 50.000 0.00 0.00 0.00 4.37
368 369 0.734889 GATGCGTCTTTGGTCATGGG 59.265 55.000 0.00 0.00 0.00 4.00
369 370 0.734889 GGATGCGTCTTTGGTCATGG 59.265 55.000 5.77 0.00 0.00 3.66
370 371 1.742761 AGGATGCGTCTTTGGTCATG 58.257 50.000 5.77 0.00 0.00 3.07
371 372 2.236146 TGTAGGATGCGTCTTTGGTCAT 59.764 45.455 5.77 0.00 0.00 3.06
372 373 1.621317 TGTAGGATGCGTCTTTGGTCA 59.379 47.619 5.77 0.00 0.00 4.02
373 374 2.380084 TGTAGGATGCGTCTTTGGTC 57.620 50.000 5.77 0.00 0.00 4.02
374 375 2.236146 TGATGTAGGATGCGTCTTTGGT 59.764 45.455 5.77 0.00 37.63 3.67
375 376 2.905075 TGATGTAGGATGCGTCTTTGG 58.095 47.619 5.77 0.00 37.63 3.28
376 377 3.873361 ACATGATGTAGGATGCGTCTTTG 59.127 43.478 5.77 0.00 37.63 2.77
377 378 3.873361 CACATGATGTAGGATGCGTCTTT 59.127 43.478 5.77 0.00 37.63 2.52
378 379 3.132824 TCACATGATGTAGGATGCGTCTT 59.867 43.478 5.77 0.00 37.63 3.01
379 380 2.695147 TCACATGATGTAGGATGCGTCT 59.305 45.455 5.77 0.00 37.63 4.18
380 381 3.097877 TCACATGATGTAGGATGCGTC 57.902 47.619 0.00 0.00 37.24 5.19
381 382 3.541996 TTCACATGATGTAGGATGCGT 57.458 42.857 0.00 0.00 0.00 5.24
382 383 6.369615 TCATATTTCACATGATGTAGGATGCG 59.630 38.462 0.00 0.00 0.00 4.73
383 384 7.677454 TCATATTTCACATGATGTAGGATGC 57.323 36.000 0.00 0.00 0.00 3.91
433 434 3.554129 GGGTTGTAGCCAATTCGCTTTTT 60.554 43.478 1.98 0.00 40.39 1.94
434 435 2.029380 GGGTTGTAGCCAATTCGCTTTT 60.029 45.455 1.98 0.00 40.39 2.27
435 436 1.544246 GGGTTGTAGCCAATTCGCTTT 59.456 47.619 1.98 0.00 40.39 3.51
436 437 1.173913 GGGTTGTAGCCAATTCGCTT 58.826 50.000 1.98 0.00 40.39 4.68
437 438 0.679960 GGGGTTGTAGCCAATTCGCT 60.680 55.000 2.35 2.35 43.09 4.93
438 439 0.679960 AGGGGTTGTAGCCAATTCGC 60.680 55.000 0.00 0.00 37.54 4.70
439 440 2.702592 TAGGGGTTGTAGCCAATTCG 57.297 50.000 0.00 0.00 37.54 3.34
440 441 5.731957 TTTTTAGGGGTTGTAGCCAATTC 57.268 39.130 0.00 0.00 37.54 2.17
493 494 1.066929 CCAGTTTGTAGCCAATTGCCC 60.067 52.381 0.00 0.00 42.71 5.36
510 511 9.832445 TTCTTTTACTTATAATCTGCCTACCAG 57.168 33.333 0.00 0.00 43.17 4.00
541 542 3.742369 CGGTTTGACCTTCTTAGCGTTTA 59.258 43.478 0.00 0.00 35.66 2.01
550 551 1.411612 AGTTCGTCGGTTTGACCTTCT 59.588 47.619 0.00 0.00 45.23 2.85
551 552 1.861971 AGTTCGTCGGTTTGACCTTC 58.138 50.000 0.00 0.00 45.23 3.46
613 617 3.583806 TGTTTGTTTGTTTCTGCACTGG 58.416 40.909 0.00 0.00 0.00 4.00
617 621 3.330267 GGGTTGTTTGTTTGTTTCTGCA 58.670 40.909 0.00 0.00 0.00 4.41
636 640 2.746269 TCTGTTTGTTTAGTCGACGGG 58.254 47.619 10.46 0.00 0.00 5.28
637 641 4.511734 GTTTCTGTTTGTTTAGTCGACGG 58.488 43.478 10.46 0.00 0.00 4.79
639 643 5.379757 TCGTTTCTGTTTGTTTAGTCGAC 57.620 39.130 7.70 7.70 0.00 4.20
644 648 5.053286 CGTTTGCTCGTTTCTGTTTGTTTAG 60.053 40.000 0.00 0.00 0.00 1.85
941 948 1.227556 GGGGCGGGCGCTATATATG 60.228 63.158 7.64 0.00 41.60 1.78
993 1000 4.794648 TTCGGGGGCATGCGGAAG 62.795 66.667 12.44 3.52 0.00 3.46
1182 1198 1.376037 CACCTTCTTCACGGAGCCC 60.376 63.158 0.00 0.00 0.00 5.19
1191 1207 1.447314 CCCGCGGTACACCTTCTTC 60.447 63.158 26.12 0.00 0.00 2.87
1494 1510 4.316823 AGGTGGTCGAGGCCCTCA 62.317 66.667 12.13 0.00 0.00 3.86
1600 1636 5.545588 ACCGATCGAGATTGATTGATTGAT 58.454 37.500 18.66 0.00 32.39 2.57
1601 1637 4.948847 ACCGATCGAGATTGATTGATTGA 58.051 39.130 18.66 0.00 32.39 2.57
1602 1638 5.261370 GACCGATCGAGATTGATTGATTG 57.739 43.478 18.66 0.00 32.39 2.67
1651 1690 3.044986 CAACAATTGAAGAACTGTGCGG 58.955 45.455 13.59 0.00 0.00 5.69
1930 1970 3.304829 ACACCAAATTGCCTGTTTAGGT 58.695 40.909 0.00 0.00 46.41 3.08
1949 1989 3.257375 ACATCGTGTGCTACTTTCCTACA 59.743 43.478 0.00 0.00 0.00 2.74
2003 2043 8.502387 GCAAGTAAAAATTATGTTTCCATGCAA 58.498 29.630 0.00 0.00 32.29 4.08
2004 2044 7.877097 AGCAAGTAAAAATTATGTTTCCATGCA 59.123 29.630 4.09 0.00 32.29 3.96
2005 2045 8.255394 AGCAAGTAAAAATTATGTTTCCATGC 57.745 30.769 0.00 0.00 32.29 4.06
2095 2148 5.801947 GGCATTAAACTACATCTTTGTGCTG 59.198 40.000 0.00 0.00 36.53 4.41
2102 2155 5.500234 TCAGCAGGCATTAAACTACATCTT 58.500 37.500 0.00 0.00 0.00 2.40
2122 2216 0.458543 CGGGTCGGTGTTCAGATCAG 60.459 60.000 0.00 0.00 0.00 2.90
2266 2360 2.687003 ATCCTCCTAGTAGGTCCAGC 57.313 55.000 16.02 0.00 37.91 4.85
2292 2386 1.808799 CTAGGTGCAGCTCACGCAG 60.809 63.158 23.94 10.11 46.56 5.18
2323 2417 2.545526 CGTGCATCAGTTGTGTTTCTCT 59.454 45.455 0.00 0.00 0.00 3.10
2345 2439 2.531508 GCAAAAACAAAGTGCGTCTCAG 59.468 45.455 0.00 0.00 0.00 3.35
2397 2491 6.456501 ACTGAACAAGTTAGCGTAAGAGATT 58.543 36.000 0.00 0.00 34.57 2.40
2480 2582 3.410850 CTCGTGATTCATGAAAGCAACG 58.589 45.455 13.09 17.90 34.49 4.10
2490 2592 1.278985 TCCAACAGGCTCGTGATTCAT 59.721 47.619 0.00 0.00 0.00 2.57
2491 2593 0.684535 TCCAACAGGCTCGTGATTCA 59.315 50.000 0.00 0.00 0.00 2.57
2494 2596 0.036952 CAGTCCAACAGGCTCGTGAT 60.037 55.000 0.00 0.00 0.00 3.06
2495 2597 1.112916 TCAGTCCAACAGGCTCGTGA 61.113 55.000 0.00 0.00 0.00 4.35
2496 2598 0.946221 GTCAGTCCAACAGGCTCGTG 60.946 60.000 0.00 0.00 0.00 4.35
2501 2603 3.050275 GCCGTCAGTCCAACAGGC 61.050 66.667 0.00 0.00 37.61 4.85
2941 3047 1.802337 TTATCCGATCCACCCTCGCG 61.802 60.000 0.00 0.00 34.84 5.87
2982 3088 4.432980 AGCTAACCACTAACAACAAGGT 57.567 40.909 0.00 0.00 0.00 3.50
2983 3089 5.548406 ACTAGCTAACCACTAACAACAAGG 58.452 41.667 0.00 0.00 0.00 3.61
2984 3090 7.376615 ACTACTAGCTAACCACTAACAACAAG 58.623 38.462 0.00 0.00 0.00 3.16
3035 3149 3.054878 GCTGGAGCACAAATCAAACAAG 58.945 45.455 0.00 0.00 41.59 3.16
3069 3183 9.241317 CCATCATAATCTTTACACATTTTGCTC 57.759 33.333 0.00 0.00 0.00 4.26
3070 3184 8.752187 ACCATCATAATCTTTACACATTTTGCT 58.248 29.630 0.00 0.00 0.00 3.91
3071 3185 8.931385 ACCATCATAATCTTTACACATTTTGC 57.069 30.769 0.00 0.00 0.00 3.68
3088 3202 3.304458 CGAATTCCGTCGAGACCATCATA 60.304 47.826 0.00 0.00 43.86 2.15
3111 3226 1.207791 AGAATACAGACTGGCCCAGG 58.792 55.000 16.70 0.00 35.51 4.45
3161 3282 0.179048 CACGAGCCCATGATGCCTTA 60.179 55.000 0.00 0.00 0.00 2.69
3178 3299 6.072175 TCAGGTGAACAGTTATTAATTGGCAC 60.072 38.462 13.71 13.71 31.60 5.01
3212 3333 2.433838 CACGCTGGCTCAGTCCTG 60.434 66.667 4.45 0.00 33.43 3.86
3217 3338 1.013005 CAGAGAACACGCTGGCTCAG 61.013 60.000 0.00 0.00 34.12 3.35
3236 3357 2.053627 CAAAATGCGTCAAGGTTCTGC 58.946 47.619 0.00 0.00 0.00 4.26
3277 3398 2.939103 AGCATTTAGTGTCGGCATCTTC 59.061 45.455 0.00 0.00 0.00 2.87
3291 3412 2.100252 CGAACGGAGGGAGTAGCATTTA 59.900 50.000 0.00 0.00 0.00 1.40
3307 3438 5.524511 TTGATGACAAGTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
3310 3441 6.657117 TCCATTTTGATGACAAGTATTTCCGA 59.343 34.615 0.00 0.00 37.32 4.55
3311 3442 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3334 3465 4.202398 TGTCTAGATGCATCCCCTTTCATC 60.202 45.833 23.06 5.36 36.49 2.92
3337 3468 3.845781 TGTCTAGATGCATCCCCTTTC 57.154 47.619 23.06 9.63 0.00 2.62
3343 3474 9.717942 AGAACTAAAATATGTCTAGATGCATCC 57.282 33.333 23.06 8.35 0.00 3.51
3377 3508 9.362539 CTTGTCATCAAAATGGATAGAAAAAGG 57.637 33.333 0.00 0.00 33.42 3.11
3425 3556 6.767456 ACTTGAGATCCTCATAGCAAATAGG 58.233 40.000 0.00 0.00 40.39 2.57
3426 3557 8.149647 AGAACTTGAGATCCTCATAGCAAATAG 58.850 37.037 0.00 0.00 40.39 1.73
3427 3558 8.027524 AGAACTTGAGATCCTCATAGCAAATA 57.972 34.615 0.00 0.00 40.39 1.40
3428 3559 6.897986 AGAACTTGAGATCCTCATAGCAAAT 58.102 36.000 0.00 0.00 40.39 2.32
3448 3579 0.234884 CCGGTTGCTTCGTTGAGAAC 59.765 55.000 0.00 0.00 34.66 3.01
3449 3580 1.503818 GCCGGTTGCTTCGTTGAGAA 61.504 55.000 1.90 0.00 36.87 2.87
3450 3581 1.959226 GCCGGTTGCTTCGTTGAGA 60.959 57.895 1.90 0.00 36.87 3.27
3451 3582 2.556287 GCCGGTTGCTTCGTTGAG 59.444 61.111 1.90 0.00 36.87 3.02
3461 3592 3.391665 CTCAGGGGCTAGCCGGTTG 62.392 68.421 27.24 22.62 36.85 3.77
3462 3593 3.083997 CTCAGGGGCTAGCCGGTT 61.084 66.667 27.24 12.34 36.85 4.44
3660 4072 2.978489 GGTTCTTCAACGAGTCTACACG 59.022 50.000 0.00 0.00 32.68 4.49
3662 4074 2.030540 CCGGTTCTTCAACGAGTCTACA 60.031 50.000 0.00 0.00 32.68 2.74
3697 4109 2.093711 TCGGTAATCATCCAGGTGTGTG 60.094 50.000 0.00 0.00 0.00 3.82
3700 4112 3.992943 TTTCGGTAATCATCCAGGTGT 57.007 42.857 0.00 0.00 0.00 4.16
3701 4113 4.450976 TGATTTCGGTAATCATCCAGGTG 58.549 43.478 6.01 0.00 45.91 4.00
3702 4114 4.771114 TGATTTCGGTAATCATCCAGGT 57.229 40.909 6.01 0.00 45.91 4.00
3710 4122 3.804873 GTCTCCAGCTGATTTCGGTAATC 59.195 47.826 17.39 0.87 42.52 1.75
3711 4123 3.738281 CGTCTCCAGCTGATTTCGGTAAT 60.738 47.826 17.39 0.00 0.00 1.89
3712 4124 2.416836 CGTCTCCAGCTGATTTCGGTAA 60.417 50.000 17.39 0.00 0.00 2.85
3713 4125 1.134367 CGTCTCCAGCTGATTTCGGTA 59.866 52.381 17.39 0.00 0.00 4.02
3714 4126 0.108615 CGTCTCCAGCTGATTTCGGT 60.109 55.000 17.39 0.00 0.00 4.69
3715 4127 0.108615 ACGTCTCCAGCTGATTTCGG 60.109 55.000 17.39 0.00 0.00 4.30
3716 4128 1.135257 AGACGTCTCCAGCTGATTTCG 60.135 52.381 17.39 16.18 0.00 3.46
3717 4129 2.266554 CAGACGTCTCCAGCTGATTTC 58.733 52.381 16.96 2.54 0.00 2.17
3801 4217 2.253403 CTCCCCACGCTAAGGAACCC 62.253 65.000 0.00 0.00 0.00 4.11
3803 4219 1.449778 GCTCCCCACGCTAAGGAAC 60.450 63.158 0.00 0.00 0.00 3.62
3805 4221 1.689233 ATGCTCCCCACGCTAAGGA 60.689 57.895 0.00 0.00 0.00 3.36
3807 4223 0.811616 GTCATGCTCCCCACGCTAAG 60.812 60.000 0.00 0.00 0.00 2.18
3809 4225 2.900273 GTCATGCTCCCCACGCTA 59.100 61.111 0.00 0.00 0.00 4.26
3829 4245 1.066143 GGGTGTGAGTTGTCCATCGAT 60.066 52.381 0.00 0.00 0.00 3.59
3864 4280 4.373116 TTGAGGTCGCCGGACAGC 62.373 66.667 5.05 0.00 45.28 4.40
3874 4290 2.035442 GCCTTGGACGCTTGAGGTC 61.035 63.158 0.00 0.00 0.00 3.85
3879 4295 2.594303 TGTGGCCTTGGACGCTTG 60.594 61.111 3.32 0.00 0.00 4.01
3881 4297 2.337879 TTTCTGTGGCCTTGGACGCT 62.338 55.000 3.32 0.00 0.00 5.07
3905 4321 1.148216 CCCATCATCCACCACCCATA 58.852 55.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.