Multiple sequence alignment - TraesCS2A01G189300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G189300 chr2A 100.000 1975 0 0 598 2572 155746411 155748385 0.000000e+00 3648.0
1 TraesCS2A01G189300 chr2A 95.404 631 27 1 1942 2572 745424497 745425125 0.000000e+00 1003.0
2 TraesCS2A01G189300 chr2A 94.929 631 30 1 1942 2572 83212745 83212117 0.000000e+00 987.0
3 TraesCS2A01G189300 chr2A 100.000 377 0 0 1 377 155745814 155746190 0.000000e+00 697.0
4 TraesCS2A01G189300 chr2A 91.716 169 13 1 193 360 735333695 735333527 1.540000e-57 233.0
5 TraesCS2A01G189300 chr2A 92.593 81 6 0 1862 1942 735333499 735333419 1.620000e-22 117.0
6 TraesCS2A01G189300 chr7A 96.830 631 18 1 1942 2572 553042335 553041707 0.000000e+00 1053.0
7 TraesCS2A01G189300 chr7A 95.103 633 31 0 1940 2572 50112150 50112782 0.000000e+00 998.0
8 TraesCS2A01G189300 chr7A 89.953 637 49 6 1942 2572 34136945 34137572 0.000000e+00 808.0
9 TraesCS2A01G189300 chr7A 90.217 184 15 3 178 360 46205433 46205614 1.190000e-58 237.0
10 TraesCS2A01G189300 chr7A 91.279 172 13 2 190 360 115514519 115514349 1.540000e-57 233.0
11 TraesCS2A01G189300 chr7A 93.827 81 5 0 1862 1942 46205642 46205722 3.480000e-24 122.0
12 TraesCS2A01G189300 chr7A 93.827 81 5 0 1862 1942 115514321 115514241 3.480000e-24 122.0
13 TraesCS2A01G189300 chr4A 96.524 633 22 0 1940 2572 574160842 574160210 0.000000e+00 1048.0
14 TraesCS2A01G189300 chr4A 93.260 638 27 5 1942 2572 617050167 617049539 0.000000e+00 926.0
15 TraesCS2A01G189300 chr4A 93.223 605 35 6 776 1378 513557723 513558323 0.000000e+00 885.0
16 TraesCS2A01G189300 chr4A 91.569 427 28 4 1386 1812 513604206 513604624 1.330000e-162 582.0
17 TraesCS2A01G189300 chr4A 88.261 230 18 7 791 1015 596924632 596924407 1.520000e-67 267.0
18 TraesCS2A01G189300 chr4A 95.890 146 6 0 1680 1825 513557873 513557728 1.190000e-58 237.0
19 TraesCS2A01G189300 chr6A 95.261 633 30 0 1940 2572 106476753 106477385 0.000000e+00 1003.0
20 TraesCS2A01G189300 chr6A 96.034 580 23 0 799 1378 35994306 35994885 0.000000e+00 944.0
21 TraesCS2A01G189300 chr6A 88.863 431 38 5 1386 1813 221346451 221346028 2.930000e-144 521.0
22 TraesCS2A01G189300 chr6A 96.386 249 9 0 1558 1806 36004495 36004743 6.620000e-111 411.0
23 TraesCS2A01G189300 chr6A 85.908 369 50 2 788 1154 221347880 221347512 2.400000e-105 392.0
24 TraesCS2A01G189300 chr6A 94.118 187 11 0 600 786 44835391 44835577 4.190000e-73 285.0
25 TraesCS2A01G189300 chr6A 93.583 187 12 0 600 786 44850119 44850305 1.950000e-71 279.0
26 TraesCS2A01G189300 chr6A 92.045 176 7 2 1386 1561 35995609 35995777 9.200000e-60 241.0
27 TraesCS2A01G189300 chr6A 92.517 147 11 0 600 746 44833545 44833691 7.210000e-51 211.0
28 TraesCS2A01G189300 chr6A 95.349 129 6 0 1680 1808 35994434 35994306 3.350000e-49 206.0
29 TraesCS2A01G189300 chr6A 89.933 149 11 4 1675 1819 221347732 221347880 3.380000e-44 189.0
30 TraesCS2A01G189300 chr6A 92.233 103 8 0 1270 1372 221347312 221347210 2.060000e-31 147.0
31 TraesCS2A01G189300 chr3A 93.701 635 31 7 1940 2572 395555510 395556137 0.000000e+00 942.0
32 TraesCS2A01G189300 chr1D 94.931 434 15 1 1386 1819 436108761 436109187 0.000000e+00 673.0
33 TraesCS2A01G189300 chr6B 88.631 431 39 5 1386 1813 300720233 300720656 1.360000e-142 516.0
34 TraesCS2A01G189300 chr6B 86.150 361 48 2 793 1151 300718730 300719090 3.100000e-104 388.0
35 TraesCS2A01G189300 chr6B 91.093 247 12 5 788 1024 675432670 675432916 2.470000e-85 326.0
36 TraesCS2A01G189300 chr6B 92.908 141 9 1 1680 1819 675432810 675432670 1.210000e-48 204.0
37 TraesCS2A01G189300 chr6B 94.175 103 6 0 1270 1372 300719293 300719395 9.530000e-35 158.0
38 TraesCS2A01G189300 chr6D 90.113 354 31 4 1463 1813 161975657 161975305 8.390000e-125 457.0
39 TraesCS2A01G189300 chr6D 80.784 536 49 23 788 1276 161977153 161976625 1.120000e-98 370.0
40 TraesCS2A01G189300 chr6D 94.681 188 10 0 599 786 456239852 456239665 2.500000e-75 292.0
41 TraesCS2A01G189300 chr6D 93.204 103 6 1 1270 1371 161976574 161976472 1.590000e-32 150.0
42 TraesCS2A01G189300 chr6D 87.879 132 9 4 1690 1819 161977027 161977153 5.730000e-32 148.0
43 TraesCS2A01G189300 chr5A 84.257 451 57 9 1386 1832 370171750 370172190 6.580000e-116 427.0
44 TraesCS2A01G189300 chr5A 81.622 370 48 8 787 1154 282627394 282627043 3.240000e-74 289.0
45 TraesCS2A01G189300 chr5A 80.952 378 51 10 776 1151 370170314 370170672 1.950000e-71 279.0
46 TraesCS2A01G189300 chr5A 88.742 151 13 4 1675 1821 282627245 282627395 5.650000e-42 182.0
47 TraesCS2A01G189300 chr5A 88.000 150 15 3 1680 1826 370170466 370170317 9.460000e-40 174.0
48 TraesCS2A01G189300 chr5A 90.826 109 10 0 1270 1378 370170905 370171013 2.060000e-31 147.0
49 TraesCS2A01G189300 chr5A 92.958 71 5 0 1171 1241 282626950 282626880 1.260000e-18 104.0
50 TraesCS2A01G189300 chr5A 89.157 83 9 0 1159 1241 370170756 370170838 1.260000e-18 104.0
51 TraesCS2A01G189300 chr2B 84.163 442 54 9 1386 1820 633582968 633582536 5.120000e-112 414.0
52 TraesCS2A01G189300 chr2B 97.396 192 4 1 1 191 206691946 206691755 2.470000e-85 326.0
53 TraesCS2A01G189300 chr2B 95.722 187 7 1 599 784 689435390 689435204 1.500000e-77 300.0
54 TraesCS2A01G189300 chr2B 81.389 360 47 9 794 1151 633584380 633584039 2.520000e-70 276.0
55 TraesCS2A01G189300 chr2B 90.826 109 10 0 1270 1378 633583806 633583698 2.060000e-31 147.0
56 TraesCS2A01G189300 chr2B 89.000 100 7 2 265 364 104060276 104060371 1.250000e-23 121.0
57 TraesCS2A01G189300 chr2B 92.958 71 5 0 1171 1241 633583943 633583873 1.260000e-18 104.0
58 TraesCS2A01G189300 chr4D 97.872 188 4 0 599 786 319314367 319314180 2.470000e-85 326.0
59 TraesCS2A01G189300 chr4D 94.828 174 8 1 599 772 300265094 300265266 1.170000e-68 270.0
60 TraesCS2A01G189300 chr7D 97.340 188 5 0 599 786 526548385 526548572 1.150000e-83 320.0
61 TraesCS2A01G189300 chr7D 100.000 37 0 0 1820 1856 526548577 526548613 4.590000e-08 69.4
62 TraesCS2A01G189300 chr2D 96.875 192 5 1 1 191 146471605 146471414 1.150000e-83 320.0
63 TraesCS2A01G189300 chr2D 96.354 192 6 1 1 191 147161271 147161080 5.340000e-82 315.0
64 TraesCS2A01G189300 chr2D 95.833 192 7 1 1 191 146792534 146792343 2.490000e-80 309.0
65 TraesCS2A01G189300 chr2D 95.213 188 9 0 599 786 621218631 621218444 5.380000e-77 298.0
66 TraesCS2A01G189300 chr5D 93.651 189 11 1 4 191 178472096 178472284 5.420000e-72 281.0
67 TraesCS2A01G189300 chr5D 90.741 108 10 0 1271 1378 137060003 137060110 7.420000e-31 145.0
68 TraesCS2A01G189300 chrUn 92.593 189 12 2 4 191 183943736 183943549 1.170000e-68 270.0
69 TraesCS2A01G189300 chr4B 91.534 189 15 1 4 191 339466204 339466016 2.540000e-65 259.0
70 TraesCS2A01G189300 chr7B 91.813 171 13 1 191 360 701646675 701646845 1.190000e-58 237.0
71 TraesCS2A01G189300 chr7B 93.827 81 5 0 1862 1942 701646865 701646945 3.480000e-24 122.0
72 TraesCS2A01G189300 chr3D 95.082 122 4 2 192 312 502156669 502156549 9.390000e-45 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G189300 chr2A 155745814 155748385 2571 False 2172.500000 3648 100.000000 1 2572 2 chr2A.!!$F2 2571
1 TraesCS2A01G189300 chr2A 745424497 745425125 628 False 1003.000000 1003 95.404000 1942 2572 1 chr2A.!!$F1 630
2 TraesCS2A01G189300 chr2A 83212117 83212745 628 True 987.000000 987 94.929000 1942 2572 1 chr2A.!!$R1 630
3 TraesCS2A01G189300 chr7A 553041707 553042335 628 True 1053.000000 1053 96.830000 1942 2572 1 chr7A.!!$R1 630
4 TraesCS2A01G189300 chr7A 50112150 50112782 632 False 998.000000 998 95.103000 1940 2572 1 chr7A.!!$F2 632
5 TraesCS2A01G189300 chr7A 34136945 34137572 627 False 808.000000 808 89.953000 1942 2572 1 chr7A.!!$F1 630
6 TraesCS2A01G189300 chr4A 574160210 574160842 632 True 1048.000000 1048 96.524000 1940 2572 1 chr4A.!!$R2 632
7 TraesCS2A01G189300 chr4A 617049539 617050167 628 True 926.000000 926 93.260000 1942 2572 1 chr4A.!!$R4 630
8 TraesCS2A01G189300 chr4A 513557723 513558323 600 False 885.000000 885 93.223000 776 1378 1 chr4A.!!$F1 602
9 TraesCS2A01G189300 chr6A 106476753 106477385 632 False 1003.000000 1003 95.261000 1940 2572 1 chr6A.!!$F3 632
10 TraesCS2A01G189300 chr6A 35994306 35995777 1471 False 592.500000 944 94.039500 799 1561 2 chr6A.!!$F5 762
11 TraesCS2A01G189300 chr6A 221346028 221347880 1852 True 353.333333 521 89.001333 788 1813 3 chr6A.!!$R2 1025
12 TraesCS2A01G189300 chr6A 44833545 44835577 2032 False 248.000000 285 93.317500 600 786 2 chr6A.!!$F6 186
13 TraesCS2A01G189300 chr3A 395555510 395556137 627 False 942.000000 942 93.701000 1940 2572 1 chr3A.!!$F1 632
14 TraesCS2A01G189300 chr6B 300718730 300720656 1926 False 354.000000 516 89.652000 793 1813 3 chr6B.!!$F2 1020
15 TraesCS2A01G189300 chr6D 161975305 161977153 1848 True 325.666667 457 88.033667 788 1813 3 chr6D.!!$R2 1025
16 TraesCS2A01G189300 chr5A 370170314 370172190 1876 False 239.250000 427 86.298000 776 1832 4 chr5A.!!$F2 1056
17 TraesCS2A01G189300 chr2B 633582536 633584380 1844 True 235.250000 414 87.334000 794 1820 4 chr2B.!!$R3 1026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.033504 AAGCACTCATCCACGTCGTT 59.966 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 4196 0.035152 TCCTACTGCTCGTTACGGGA 60.035 55.0 9.51 0.04 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.680352 GGCTCAGACCGGGTCTCA 60.680 66.667 26.53 14.24 41.37 3.27
28 29 2.574399 GCTCAGACCGGGTCTCAC 59.426 66.667 26.53 14.73 41.37 3.51
29 30 3.007973 GCTCAGACCGGGTCTCACC 62.008 68.421 26.53 13.25 41.37 4.02
37 38 3.458163 GGGTCTCACCGATGGCGA 61.458 66.667 0.00 0.00 39.83 5.54
38 39 2.202756 GGTCTCACCGATGGCGAC 60.203 66.667 0.00 0.00 40.82 5.19
51 52 3.161450 GCGACATGGCCCTCCCTA 61.161 66.667 0.00 0.00 0.00 3.53
52 53 3.142393 CGACATGGCCCTCCCTAG 58.858 66.667 0.00 0.00 0.00 3.02
53 54 2.511452 CGACATGGCCCTCCCTAGG 61.511 68.421 0.06 0.06 43.25 3.02
64 65 3.617535 TCCCTAGGGAGAAGCACTC 57.382 57.895 27.73 2.89 44.24 3.51
65 66 0.710588 TCCCTAGGGAGAAGCACTCA 59.289 55.000 27.73 0.00 46.54 3.41
66 67 1.292242 TCCCTAGGGAGAAGCACTCAT 59.708 52.381 27.73 4.05 46.54 2.90
67 68 1.691434 CCCTAGGGAGAAGCACTCATC 59.309 57.143 24.99 4.94 46.54 2.92
68 69 1.691434 CCTAGGGAGAAGCACTCATCC 59.309 57.143 0.00 5.92 46.54 3.51
69 70 2.392662 CTAGGGAGAAGCACTCATCCA 58.607 52.381 11.83 0.00 46.54 3.41
70 71 0.908198 AGGGAGAAGCACTCATCCAC 59.092 55.000 11.83 0.00 46.54 4.02
71 72 0.460987 GGGAGAAGCACTCATCCACG 60.461 60.000 11.83 0.00 46.54 4.94
72 73 0.247736 GGAGAAGCACTCATCCACGT 59.752 55.000 11.83 0.00 46.54 4.49
73 74 1.634702 GAGAAGCACTCATCCACGTC 58.365 55.000 6.14 0.00 44.36 4.34
74 75 0.109086 AGAAGCACTCATCCACGTCG 60.109 55.000 0.00 0.00 0.00 5.12
75 76 0.388649 GAAGCACTCATCCACGTCGT 60.389 55.000 0.00 0.00 0.00 4.34
76 77 0.033504 AAGCACTCATCCACGTCGTT 59.966 50.000 0.00 0.00 0.00 3.85
77 78 0.388649 AGCACTCATCCACGTCGTTC 60.389 55.000 0.00 0.00 0.00 3.95
78 79 0.666274 GCACTCATCCACGTCGTTCA 60.666 55.000 0.00 0.00 0.00 3.18
79 80 1.340658 CACTCATCCACGTCGTTCAG 58.659 55.000 0.00 0.00 0.00 3.02
80 81 0.243907 ACTCATCCACGTCGTTCAGG 59.756 55.000 0.00 0.00 0.00 3.86
81 82 1.078759 CTCATCCACGTCGTTCAGGC 61.079 60.000 0.00 0.00 0.00 4.85
82 83 2.100631 CATCCACGTCGTTCAGGCC 61.101 63.158 0.00 0.00 0.00 5.19
83 84 2.579657 ATCCACGTCGTTCAGGCCA 61.580 57.895 5.01 0.00 0.00 5.36
84 85 1.899437 ATCCACGTCGTTCAGGCCAT 61.899 55.000 5.01 0.00 0.00 4.40
85 86 2.100631 CCACGTCGTTCAGGCCATC 61.101 63.158 5.01 0.00 0.00 3.51
86 87 2.100631 CACGTCGTTCAGGCCATCC 61.101 63.158 5.01 0.00 0.00 3.51
87 88 2.264480 CGTCGTTCAGGCCATCCA 59.736 61.111 5.01 0.00 33.74 3.41
88 89 1.375396 CGTCGTTCAGGCCATCCAA 60.375 57.895 5.01 0.00 33.74 3.53
89 90 1.361668 CGTCGTTCAGGCCATCCAAG 61.362 60.000 5.01 0.00 33.74 3.61
90 91 1.026718 GTCGTTCAGGCCATCCAAGG 61.027 60.000 5.01 0.00 33.74 3.61
100 101 2.442236 CCATCCAAGGCTATTGTGGT 57.558 50.000 3.02 0.00 33.88 4.16
101 102 2.301346 CCATCCAAGGCTATTGTGGTC 58.699 52.381 3.02 0.00 33.88 4.02
102 103 2.357050 CCATCCAAGGCTATTGTGGTCA 60.357 50.000 3.02 0.00 33.88 4.02
103 104 2.787473 TCCAAGGCTATTGTGGTCAG 57.213 50.000 3.02 0.00 33.88 3.51
104 105 2.265367 TCCAAGGCTATTGTGGTCAGA 58.735 47.619 3.02 0.00 33.88 3.27
105 106 2.237143 TCCAAGGCTATTGTGGTCAGAG 59.763 50.000 3.02 0.00 33.88 3.35
106 107 2.012673 CAAGGCTATTGTGGTCAGAGC 58.987 52.381 0.00 0.00 35.20 4.09
107 108 1.577736 AGGCTATTGTGGTCAGAGCT 58.422 50.000 0.38 0.00 35.81 4.09
108 109 1.209019 AGGCTATTGTGGTCAGAGCTG 59.791 52.381 0.00 0.00 35.81 4.24
109 110 1.012841 GCTATTGTGGTCAGAGCTGC 58.987 55.000 0.00 0.00 34.02 5.25
110 111 1.676916 GCTATTGTGGTCAGAGCTGCA 60.677 52.381 1.02 0.00 34.02 4.41
111 112 2.005451 CTATTGTGGTCAGAGCTGCAC 58.995 52.381 1.02 0.00 0.00 4.57
112 113 0.607489 ATTGTGGTCAGAGCTGCACC 60.607 55.000 1.02 0.56 33.97 5.01
113 114 1.699054 TTGTGGTCAGAGCTGCACCT 61.699 55.000 1.02 0.00 34.26 4.00
114 115 0.831711 TGTGGTCAGAGCTGCACCTA 60.832 55.000 1.02 0.00 34.26 3.08
115 116 0.390472 GTGGTCAGAGCTGCACCTAC 60.390 60.000 1.02 0.00 34.26 3.18
116 117 1.153745 GGTCAGAGCTGCACCTACG 60.154 63.158 1.02 0.00 32.09 3.51
117 118 1.807573 GTCAGAGCTGCACCTACGC 60.808 63.158 1.02 0.00 0.00 4.42
118 119 2.262603 CAGAGCTGCACCTACGCA 59.737 61.111 1.02 0.00 40.32 5.24
119 120 2.097038 CAGAGCTGCACCTACGCAC 61.097 63.158 1.02 0.00 36.86 5.34
120 121 2.815647 GAGCTGCACCTACGCACC 60.816 66.667 1.02 0.00 36.86 5.01
121 122 3.302347 GAGCTGCACCTACGCACCT 62.302 63.158 1.02 0.00 36.86 4.00
122 123 1.945354 GAGCTGCACCTACGCACCTA 61.945 60.000 1.02 0.00 36.86 3.08
123 124 1.519455 GCTGCACCTACGCACCTAG 60.519 63.158 0.00 0.00 36.86 3.02
124 125 1.141881 CTGCACCTACGCACCTAGG 59.858 63.158 7.41 7.41 39.55 3.02
125 126 1.304630 TGCACCTACGCACCTAGGA 60.305 57.895 17.98 0.00 37.35 2.94
126 127 0.901114 TGCACCTACGCACCTAGGAA 60.901 55.000 17.98 0.00 37.35 3.36
127 128 0.459759 GCACCTACGCACCTAGGAAC 60.460 60.000 17.98 5.70 37.35 3.62
128 129 1.183549 CACCTACGCACCTAGGAACT 58.816 55.000 17.98 0.00 46.37 3.01
129 130 1.135083 CACCTACGCACCTAGGAACTG 60.135 57.143 17.98 4.40 41.52 3.16
130 131 1.272313 ACCTACGCACCTAGGAACTGA 60.272 52.381 17.98 0.00 41.52 3.41
131 132 1.134560 CCTACGCACCTAGGAACTGAC 59.865 57.143 17.98 0.00 41.52 3.51
132 133 1.816835 CTACGCACCTAGGAACTGACA 59.183 52.381 17.98 0.00 41.52 3.58
133 134 1.267121 ACGCACCTAGGAACTGACAT 58.733 50.000 17.98 0.00 41.52 3.06
134 135 1.623811 ACGCACCTAGGAACTGACATT 59.376 47.619 17.98 0.00 41.52 2.71
135 136 2.002586 CGCACCTAGGAACTGACATTG 58.997 52.381 17.98 0.22 41.52 2.82
136 137 1.740025 GCACCTAGGAACTGACATTGC 59.260 52.381 17.98 7.67 41.52 3.56
137 138 2.359900 CACCTAGGAACTGACATTGCC 58.640 52.381 17.98 0.00 41.52 4.52
138 139 2.026822 CACCTAGGAACTGACATTGCCT 60.027 50.000 17.98 0.00 41.52 4.75
139 140 2.237392 ACCTAGGAACTGACATTGCCTC 59.763 50.000 17.98 0.00 41.52 4.70
140 141 2.420687 CCTAGGAACTGACATTGCCTCC 60.421 54.545 1.05 0.00 41.52 4.30
141 142 1.366319 AGGAACTGACATTGCCTCCT 58.634 50.000 0.00 0.00 37.18 3.69
142 143 1.707427 AGGAACTGACATTGCCTCCTT 59.293 47.619 0.00 0.00 37.18 3.36
143 144 2.108952 AGGAACTGACATTGCCTCCTTT 59.891 45.455 0.00 0.00 37.18 3.11
144 145 2.229784 GGAACTGACATTGCCTCCTTTG 59.770 50.000 0.00 0.00 0.00 2.77
145 146 1.251251 ACTGACATTGCCTCCTTTGC 58.749 50.000 0.00 0.00 0.00 3.68
146 147 1.250328 CTGACATTGCCTCCTTTGCA 58.750 50.000 0.00 0.00 36.84 4.08
147 148 1.822990 CTGACATTGCCTCCTTTGCAT 59.177 47.619 0.00 0.00 38.76 3.96
148 149 2.232941 CTGACATTGCCTCCTTTGCATT 59.767 45.455 0.00 0.00 38.76 3.56
149 150 3.429492 TGACATTGCCTCCTTTGCATTA 58.571 40.909 0.00 0.00 38.76 1.90
150 151 4.025360 TGACATTGCCTCCTTTGCATTAT 58.975 39.130 0.00 0.00 38.76 1.28
151 152 5.199723 TGACATTGCCTCCTTTGCATTATA 58.800 37.500 0.00 0.00 38.76 0.98
152 153 5.834742 TGACATTGCCTCCTTTGCATTATAT 59.165 36.000 0.00 0.00 38.76 0.86
153 154 7.003482 TGACATTGCCTCCTTTGCATTATATA 58.997 34.615 0.00 0.00 38.76 0.86
154 155 7.040478 TGACATTGCCTCCTTTGCATTATATAC 60.040 37.037 0.00 0.00 38.76 1.47
155 156 6.777091 ACATTGCCTCCTTTGCATTATATACA 59.223 34.615 0.00 0.00 38.76 2.29
156 157 6.633500 TTGCCTCCTTTGCATTATATACAC 57.367 37.500 0.00 0.00 38.76 2.90
157 158 5.070001 TGCCTCCTTTGCATTATATACACC 58.930 41.667 0.00 0.00 32.85 4.16
158 159 5.163099 TGCCTCCTTTGCATTATATACACCT 60.163 40.000 0.00 0.00 32.85 4.00
159 160 5.770162 GCCTCCTTTGCATTATATACACCTT 59.230 40.000 0.00 0.00 0.00 3.50
160 161 6.265422 GCCTCCTTTGCATTATATACACCTTT 59.735 38.462 0.00 0.00 0.00 3.11
161 162 7.201911 GCCTCCTTTGCATTATATACACCTTTT 60.202 37.037 0.00 0.00 0.00 2.27
162 163 9.349713 CCTCCTTTGCATTATATACACCTTTTA 57.650 33.333 0.00 0.00 0.00 1.52
164 165 9.914834 TCCTTTGCATTATATACACCTTTTAGT 57.085 29.630 0.00 0.00 0.00 2.24
169 170 9.688091 TGCATTATATACACCTTTTAGTTTCCA 57.312 29.630 0.00 0.00 0.00 3.53
170 171 9.946165 GCATTATATACACCTTTTAGTTTCCAC 57.054 33.333 0.00 0.00 0.00 4.02
175 176 7.687941 ATACACCTTTTAGTTTCCACATCTG 57.312 36.000 0.00 0.00 0.00 2.90
176 177 4.278419 ACACCTTTTAGTTTCCACATCTGC 59.722 41.667 0.00 0.00 0.00 4.26
177 178 4.520492 CACCTTTTAGTTTCCACATCTGCT 59.480 41.667 0.00 0.00 0.00 4.24
178 179 4.520492 ACCTTTTAGTTTCCACATCTGCTG 59.480 41.667 0.00 0.00 0.00 4.41
179 180 4.479619 CTTTTAGTTTCCACATCTGCTGC 58.520 43.478 0.00 0.00 0.00 5.25
180 181 2.857186 TAGTTTCCACATCTGCTGCA 57.143 45.000 0.88 0.88 0.00 4.41
181 182 1.531423 AGTTTCCACATCTGCTGCAG 58.469 50.000 23.31 23.31 0.00 4.41
182 183 1.072806 AGTTTCCACATCTGCTGCAGA 59.927 47.619 32.07 32.07 44.99 4.26
183 184 1.881973 GTTTCCACATCTGCTGCAGAA 59.118 47.619 33.31 16.01 44.04 3.02
184 185 2.275134 TTCCACATCTGCTGCAGAAA 57.725 45.000 33.31 20.69 44.04 2.52
185 186 2.275134 TCCACATCTGCTGCAGAAAA 57.725 45.000 33.31 13.98 44.04 2.29
186 187 2.585330 TCCACATCTGCTGCAGAAAAA 58.415 42.857 33.31 13.60 44.04 1.94
208 209 8.974060 AAAAACATGAGACCTTTTAGAGTACA 57.026 30.769 0.00 0.00 0.00 2.90
209 210 9.574516 AAAAACATGAGACCTTTTAGAGTACAT 57.425 29.630 0.00 0.00 0.00 2.29
210 211 8.779354 AAACATGAGACCTTTTAGAGTACATC 57.221 34.615 0.00 0.00 0.00 3.06
211 212 7.482169 ACATGAGACCTTTTAGAGTACATCA 57.518 36.000 0.00 0.00 0.00 3.07
212 213 7.907389 ACATGAGACCTTTTAGAGTACATCAA 58.093 34.615 0.00 0.00 0.00 2.57
213 214 8.037758 ACATGAGACCTTTTAGAGTACATCAAG 58.962 37.037 0.00 0.00 0.00 3.02
214 215 7.540474 TGAGACCTTTTAGAGTACATCAAGT 57.460 36.000 0.00 0.00 0.00 3.16
215 216 7.603651 TGAGACCTTTTAGAGTACATCAAGTC 58.396 38.462 0.00 0.00 0.00 3.01
216 217 7.451877 TGAGACCTTTTAGAGTACATCAAGTCT 59.548 37.037 0.00 0.00 33.67 3.24
217 218 8.880991 AGACCTTTTAGAGTACATCAAGTCTA 57.119 34.615 0.00 0.00 31.55 2.59
218 219 9.482175 AGACCTTTTAGAGTACATCAAGTCTAT 57.518 33.333 0.00 0.00 32.70 1.98
226 227 7.429633 AGAGTACATCAAGTCTATTTGGATCG 58.570 38.462 0.00 0.00 0.00 3.69
227 228 7.068839 AGAGTACATCAAGTCTATTTGGATCGT 59.931 37.037 0.00 0.00 0.00 3.73
228 229 7.203910 AGTACATCAAGTCTATTTGGATCGTC 58.796 38.462 0.00 0.00 0.00 4.20
229 230 5.360591 ACATCAAGTCTATTTGGATCGTCC 58.639 41.667 0.00 0.00 36.96 4.79
230 231 5.104941 ACATCAAGTCTATTTGGATCGTCCA 60.105 40.000 3.02 3.02 46.61 4.02
240 241 3.924114 TGGATCGTCCATTTATGTGGT 57.076 42.857 3.02 0.00 42.67 4.16
241 242 4.229304 TGGATCGTCCATTTATGTGGTT 57.771 40.909 3.02 0.00 42.67 3.67
242 243 3.944650 TGGATCGTCCATTTATGTGGTTG 59.055 43.478 3.02 0.00 42.67 3.77
243 244 4.196193 GGATCGTCCATTTATGTGGTTGA 58.804 43.478 0.00 0.00 40.27 3.18
244 245 4.638421 GGATCGTCCATTTATGTGGTTGAA 59.362 41.667 0.00 0.00 40.27 2.69
245 246 5.220854 GGATCGTCCATTTATGTGGTTGAAG 60.221 44.000 0.00 0.00 40.27 3.02
246 247 4.006989 TCGTCCATTTATGTGGTTGAAGG 58.993 43.478 0.00 0.00 40.27 3.46
247 248 3.128589 CGTCCATTTATGTGGTTGAAGGG 59.871 47.826 0.00 0.00 40.27 3.95
248 249 3.096092 TCCATTTATGTGGTTGAAGGGC 58.904 45.455 0.00 0.00 40.27 5.19
249 250 2.168313 CCATTTATGTGGTTGAAGGGCC 59.832 50.000 0.00 0.00 34.46 5.80
250 251 1.931635 TTTATGTGGTTGAAGGGCCC 58.068 50.000 16.46 16.46 0.00 5.80
251 252 0.780637 TTATGTGGTTGAAGGGCCCA 59.219 50.000 27.56 0.00 0.00 5.36
252 253 0.331278 TATGTGGTTGAAGGGCCCAG 59.669 55.000 27.56 0.00 0.00 4.45
253 254 1.434513 ATGTGGTTGAAGGGCCCAGA 61.435 55.000 27.56 3.39 0.00 3.86
254 255 1.384191 GTGGTTGAAGGGCCCAGAT 59.616 57.895 27.56 9.97 0.00 2.90
255 256 0.967380 GTGGTTGAAGGGCCCAGATG 60.967 60.000 27.56 0.00 0.00 2.90
256 257 1.139498 TGGTTGAAGGGCCCAGATGA 61.139 55.000 27.56 0.00 0.00 2.92
257 258 0.394899 GGTTGAAGGGCCCAGATGAG 60.395 60.000 27.56 0.00 0.00 2.90
258 259 1.034292 GTTGAAGGGCCCAGATGAGC 61.034 60.000 27.56 1.72 0.00 4.26
267 268 2.772287 GCCCAGATGAGCCAATACTAC 58.228 52.381 0.00 0.00 0.00 2.73
268 269 2.104792 GCCCAGATGAGCCAATACTACA 59.895 50.000 0.00 0.00 0.00 2.74
269 270 3.805108 GCCCAGATGAGCCAATACTACAG 60.805 52.174 0.00 0.00 0.00 2.74
270 271 3.389329 CCCAGATGAGCCAATACTACAGT 59.611 47.826 0.00 0.00 0.00 3.55
271 272 4.588951 CCCAGATGAGCCAATACTACAGTA 59.411 45.833 0.00 0.00 34.67 2.74
272 273 5.279206 CCCAGATGAGCCAATACTACAGTAG 60.279 48.000 6.00 6.00 33.52 2.57
273 274 5.536538 CCAGATGAGCCAATACTACAGTAGA 59.463 44.000 14.94 0.00 33.52 2.59
274 275 6.210385 CCAGATGAGCCAATACTACAGTAGAT 59.790 42.308 14.94 1.10 33.52 1.98
275 276 7.256119 CCAGATGAGCCAATACTACAGTAGATT 60.256 40.741 14.94 6.96 33.52 2.40
276 277 8.147058 CAGATGAGCCAATACTACAGTAGATTT 58.853 37.037 14.94 4.51 33.52 2.17
277 278 8.709308 AGATGAGCCAATACTACAGTAGATTTT 58.291 33.333 14.94 2.14 33.52 1.82
278 279 8.894768 ATGAGCCAATACTACAGTAGATTTTC 57.105 34.615 14.94 7.67 33.52 2.29
279 280 6.978659 TGAGCCAATACTACAGTAGATTTTCG 59.021 38.462 14.94 0.00 33.52 3.46
280 281 6.281405 AGCCAATACTACAGTAGATTTTCGG 58.719 40.000 14.94 7.65 33.52 4.30
281 282 6.047231 GCCAATACTACAGTAGATTTTCGGT 58.953 40.000 14.94 0.00 33.52 4.69
282 283 7.069085 AGCCAATACTACAGTAGATTTTCGGTA 59.931 37.037 14.94 0.00 33.52 4.02
283 284 7.381678 GCCAATACTACAGTAGATTTTCGGTAG 59.618 40.741 14.94 0.00 37.96 3.18
284 285 8.411683 CCAATACTACAGTAGATTTTCGGTAGT 58.588 37.037 14.94 9.77 43.62 2.73
302 303 9.520515 TTCGGTAGTATATTAGTTAGTTAGGGG 57.479 37.037 0.00 0.00 0.00 4.79
303 304 7.611855 TCGGTAGTATATTAGTTAGTTAGGGGC 59.388 40.741 0.00 0.00 0.00 5.80
304 305 7.394359 CGGTAGTATATTAGTTAGTTAGGGGCA 59.606 40.741 0.00 0.00 0.00 5.36
305 306 9.264653 GGTAGTATATTAGTTAGTTAGGGGCAT 57.735 37.037 0.00 0.00 0.00 4.40
312 313 5.500546 AGTTAGTTAGGGGCATTATAGGC 57.499 43.478 0.00 0.00 0.00 3.93
313 314 4.911522 AGTTAGTTAGGGGCATTATAGGCA 59.088 41.667 1.57 0.00 35.46 4.75
314 315 5.013183 AGTTAGTTAGGGGCATTATAGGCAG 59.987 44.000 1.57 0.00 35.46 4.85
315 316 3.327439 AGTTAGGGGCATTATAGGCAGT 58.673 45.455 1.57 0.00 35.46 4.40
316 317 3.722101 AGTTAGGGGCATTATAGGCAGTT 59.278 43.478 1.57 0.00 35.46 3.16
317 318 2.959465 AGGGGCATTATAGGCAGTTC 57.041 50.000 1.57 0.00 35.46 3.01
318 319 2.135189 AGGGGCATTATAGGCAGTTCA 58.865 47.619 1.57 0.00 35.46 3.18
319 320 2.718609 AGGGGCATTATAGGCAGTTCAT 59.281 45.455 1.57 0.00 35.46 2.57
320 321 3.140895 AGGGGCATTATAGGCAGTTCATT 59.859 43.478 1.57 0.00 35.46 2.57
321 322 3.256631 GGGGCATTATAGGCAGTTCATTG 59.743 47.826 1.57 0.00 35.46 2.82
322 323 3.891366 GGGCATTATAGGCAGTTCATTGT 59.109 43.478 1.57 0.00 35.46 2.71
323 324 4.342092 GGGCATTATAGGCAGTTCATTGTT 59.658 41.667 1.57 0.00 35.46 2.83
324 325 5.163416 GGGCATTATAGGCAGTTCATTGTTT 60.163 40.000 1.57 0.00 35.46 2.83
325 326 6.040391 GGGCATTATAGGCAGTTCATTGTTTA 59.960 38.462 1.57 0.00 35.46 2.01
326 327 7.255942 GGGCATTATAGGCAGTTCATTGTTTAT 60.256 37.037 1.57 0.00 35.46 1.40
327 328 8.143835 GGCATTATAGGCAGTTCATTGTTTATT 58.856 33.333 1.57 0.00 0.00 1.40
328 329 9.533253 GCATTATAGGCAGTTCATTGTTTATTT 57.467 29.630 0.00 0.00 0.00 1.40
334 335 8.353423 AGGCAGTTCATTGTTTATTTATCTGT 57.647 30.769 0.00 0.00 0.00 3.41
335 336 8.806146 AGGCAGTTCATTGTTTATTTATCTGTT 58.194 29.630 0.00 0.00 0.00 3.16
336 337 9.423061 GGCAGTTCATTGTTTATTTATCTGTTT 57.577 29.630 0.00 0.00 0.00 2.83
356 357 8.523658 TCTGTTTATATCAATCTCGTGGATAGG 58.476 37.037 0.00 0.00 33.71 2.57
357 358 8.190326 TGTTTATATCAATCTCGTGGATAGGT 57.810 34.615 0.00 0.00 33.71 3.08
358 359 8.647796 TGTTTATATCAATCTCGTGGATAGGTT 58.352 33.333 0.00 0.00 33.71 3.50
359 360 9.141400 GTTTATATCAATCTCGTGGATAGGTTC 57.859 37.037 0.00 0.00 33.71 3.62
360 361 4.608948 ATCAATCTCGTGGATAGGTTCC 57.391 45.455 0.00 0.00 45.69 3.62
361 362 2.698797 TCAATCTCGTGGATAGGTTCCC 59.301 50.000 0.00 0.00 44.77 3.97
362 363 1.329256 ATCTCGTGGATAGGTTCCCG 58.671 55.000 0.00 0.00 44.77 5.14
363 364 1.067582 CTCGTGGATAGGTTCCCGC 59.932 63.158 0.00 0.00 44.77 6.13
364 365 2.108362 CGTGGATAGGTTCCCGCC 59.892 66.667 0.00 0.00 44.77 6.13
365 366 2.727392 CGTGGATAGGTTCCCGCCA 61.727 63.158 0.00 0.00 44.77 5.69
366 367 1.837090 GTGGATAGGTTCCCGCCAT 59.163 57.895 0.00 0.00 44.77 4.40
367 368 0.250338 GTGGATAGGTTCCCGCCATC 60.250 60.000 0.00 0.00 44.77 3.51
368 369 1.004918 GGATAGGTTCCCGCCATCG 60.005 63.158 0.00 0.00 38.75 3.84
369 370 1.746517 GATAGGTTCCCGCCATCGT 59.253 57.895 0.00 0.00 0.00 3.73
370 371 0.319641 GATAGGTTCCCGCCATCGTC 60.320 60.000 0.00 0.00 0.00 4.20
371 372 1.046472 ATAGGTTCCCGCCATCGTCA 61.046 55.000 0.00 0.00 0.00 4.35
372 373 1.259142 TAGGTTCCCGCCATCGTCAA 61.259 55.000 0.00 0.00 0.00 3.18
373 374 2.106683 GGTTCCCGCCATCGTCAAG 61.107 63.158 0.00 0.00 0.00 3.02
374 375 2.106683 GTTCCCGCCATCGTCAAGG 61.107 63.158 0.00 0.00 0.00 3.61
375 376 3.323758 TTCCCGCCATCGTCAAGGG 62.324 63.158 0.00 0.00 43.32 3.95
376 377 4.856801 CCCGCCATCGTCAAGGGG 62.857 72.222 0.00 0.00 38.44 4.79
628 629 8.253113 CAGGTAAATGCAAACCTAAATCTGAAT 58.747 33.333 15.95 0.00 44.43 2.57
634 635 7.994425 TGCAAACCTAAATCTGAATAGACAA 57.006 32.000 0.00 0.00 35.34 3.18
673 674 9.671279 TCAGAATGTAAACTTGTATCATGTCAT 57.329 29.630 0.00 0.00 37.40 3.06
762 763 8.691661 AGGAAAATTAGACATGTAACAACACT 57.308 30.769 0.00 0.00 0.00 3.55
763 764 9.787435 AGGAAAATTAGACATGTAACAACACTA 57.213 29.630 0.00 0.00 0.00 2.74
764 765 9.821662 GGAAAATTAGACATGTAACAACACTAC 57.178 33.333 0.00 0.00 0.00 2.73
769 770 6.801539 AGACATGTAACAACACTACATTGG 57.198 37.500 0.00 0.00 37.79 3.16
770 771 6.296026 AGACATGTAACAACACTACATTGGT 58.704 36.000 0.00 0.00 37.79 3.67
771 772 7.446769 AGACATGTAACAACACTACATTGGTA 58.553 34.615 0.00 0.00 37.79 3.25
878 879 0.749454 GGGAACGGCATCTGCTCAAT 60.749 55.000 1.70 0.00 41.70 2.57
1378 1790 5.907197 TTTCTCAGTGACTTTTTAGCTCG 57.093 39.130 0.00 0.00 0.00 5.03
1379 1791 3.318017 TCTCAGTGACTTTTTAGCTCGC 58.682 45.455 0.00 0.00 0.00 5.03
1380 1792 2.058798 TCAGTGACTTTTTAGCTCGCG 58.941 47.619 0.00 0.00 0.00 5.87
1381 1793 2.058798 CAGTGACTTTTTAGCTCGCGA 58.941 47.619 9.26 9.26 0.00 5.87
1382 1794 2.091277 CAGTGACTTTTTAGCTCGCGAG 59.909 50.000 31.37 31.37 0.00 5.03
1383 1795 1.390463 GTGACTTTTTAGCTCGCGAGG 59.610 52.381 35.10 19.79 0.00 4.63
1510 3815 4.467084 GTCGCAGCCGATGGGGAA 62.467 66.667 0.42 0.00 46.38 3.97
1556 3861 2.640302 GCTGCTGACGGAGGTCTCA 61.640 63.158 0.00 0.00 43.79 3.27
1609 3914 0.741221 GTTGAGGCTCCATCGTGACC 60.741 60.000 12.86 0.00 0.00 4.02
1610 3915 1.191489 TTGAGGCTCCATCGTGACCA 61.191 55.000 12.86 0.00 0.00 4.02
1613 3918 0.107508 AGGCTCCATCGTGACCAATG 60.108 55.000 0.00 0.00 0.00 2.82
1646 3951 2.599082 GACGAATCCATCTCACGAACAC 59.401 50.000 0.00 0.00 0.00 3.32
1650 3955 3.516981 ATCCATCTCACGAACACTCAG 57.483 47.619 0.00 0.00 0.00 3.35
1670 3975 1.508256 GGACTATGGCCCTAGTTGGT 58.492 55.000 20.20 0.00 32.11 3.67
1708 4013 6.704050 GGGTTTTGTGCTAATGTGTGTTTAAT 59.296 34.615 0.00 0.00 0.00 1.40
1710 4015 8.061268 GGTTTTGTGCTAATGTGTGTTTAATTG 58.939 33.333 0.00 0.00 0.00 2.32
1711 4016 6.761731 TTGTGCTAATGTGTGTTTAATTGC 57.238 33.333 0.00 0.00 0.00 3.56
1713 4018 4.323336 GTGCTAATGTGTGTTTAATTGCCG 59.677 41.667 0.00 0.00 0.00 5.69
1715 4020 4.617298 GCTAATGTGTGTTTAATTGCCGGT 60.617 41.667 1.90 0.00 0.00 5.28
1724 4031 1.558167 TAATTGCCGGTGGAGCTCCA 61.558 55.000 32.00 32.00 45.30 3.86
1745 4052 0.881118 TTTTGAGCAGATGCCGTTCC 59.119 50.000 0.14 0.00 43.38 3.62
1760 4067 1.475280 CGTTCCCTACAGATCCAACGA 59.525 52.381 0.00 0.00 39.10 3.85
1770 4077 3.006061 ATCCAACGAGGTGGGATCA 57.994 52.632 7.39 0.00 42.24 2.92
1777 4084 3.223674 ACGAGGTGGGATCAAAGTTTT 57.776 42.857 0.00 0.00 0.00 2.43
1821 4128 5.703592 AGTTTTCACTTGATACGTTGCCATA 59.296 36.000 0.00 0.00 0.00 2.74
1822 4129 6.374333 AGTTTTCACTTGATACGTTGCCATAT 59.626 34.615 0.00 0.00 0.00 1.78
1823 4130 7.551262 AGTTTTCACTTGATACGTTGCCATATA 59.449 33.333 0.00 0.00 0.00 0.86
1824 4131 8.342634 GTTTTCACTTGATACGTTGCCATATAT 58.657 33.333 0.00 0.00 0.00 0.86
1825 4132 8.445275 TTTCACTTGATACGTTGCCATATATT 57.555 30.769 0.00 0.00 0.00 1.28
1826 4133 7.420184 TCACTTGATACGTTGCCATATATTG 57.580 36.000 0.00 0.00 0.00 1.90
1827 4134 6.989759 TCACTTGATACGTTGCCATATATTGT 59.010 34.615 0.00 0.00 0.00 2.71
1828 4135 7.497579 TCACTTGATACGTTGCCATATATTGTT 59.502 33.333 0.00 0.00 0.00 2.83
1829 4136 8.769891 CACTTGATACGTTGCCATATATTGTTA 58.230 33.333 0.00 0.00 0.00 2.41
1830 4137 8.770828 ACTTGATACGTTGCCATATATTGTTAC 58.229 33.333 0.00 0.00 0.00 2.50
1831 4138 8.664211 TTGATACGTTGCCATATATTGTTACA 57.336 30.769 0.00 0.00 0.00 2.41
1832 4139 8.840833 TGATACGTTGCCATATATTGTTACAT 57.159 30.769 0.00 0.00 0.00 2.29
1833 4140 8.716909 TGATACGTTGCCATATATTGTTACATG 58.283 33.333 0.00 0.00 0.00 3.21
1834 4141 8.840833 ATACGTTGCCATATATTGTTACATGA 57.159 30.769 0.00 0.00 0.00 3.07
1835 4142 7.189693 ACGTTGCCATATATTGTTACATGAG 57.810 36.000 0.00 0.00 0.00 2.90
1836 4143 6.204688 ACGTTGCCATATATTGTTACATGAGG 59.795 38.462 0.00 0.00 0.00 3.86
1837 4144 6.348458 CGTTGCCATATATTGTTACATGAGGG 60.348 42.308 0.00 0.00 0.00 4.30
1838 4145 6.199557 TGCCATATATTGTTACATGAGGGT 57.800 37.500 0.00 0.00 0.00 4.34
1839 4146 6.609876 TGCCATATATTGTTACATGAGGGTT 58.390 36.000 0.00 0.00 0.00 4.11
1840 4147 6.489700 TGCCATATATTGTTACATGAGGGTTG 59.510 38.462 0.00 0.00 0.00 3.77
1841 4148 6.490040 GCCATATATTGTTACATGAGGGTTGT 59.510 38.462 0.00 0.00 0.00 3.32
1842 4149 7.014230 GCCATATATTGTTACATGAGGGTTGTT 59.986 37.037 0.00 0.00 0.00 2.83
1843 4150 8.352201 CCATATATTGTTACATGAGGGTTGTTG 58.648 37.037 0.00 0.00 0.00 3.33
1844 4151 6.773976 ATATTGTTACATGAGGGTTGTTGG 57.226 37.500 0.00 0.00 0.00 3.77
1845 4152 3.586470 TGTTACATGAGGGTTGTTGGT 57.414 42.857 0.00 0.00 0.00 3.67
1846 4153 3.482436 TGTTACATGAGGGTTGTTGGTC 58.518 45.455 0.00 0.00 0.00 4.02
1847 4154 2.817844 GTTACATGAGGGTTGTTGGTCC 59.182 50.000 0.00 0.00 0.00 4.46
1848 4155 1.149101 ACATGAGGGTTGTTGGTCCT 58.851 50.000 0.00 0.00 0.00 3.85
1849 4156 1.499007 ACATGAGGGTTGTTGGTCCTT 59.501 47.619 0.00 0.00 0.00 3.36
1850 4157 1.888512 CATGAGGGTTGTTGGTCCTTG 59.111 52.381 0.00 0.00 0.00 3.61
1851 4158 0.923358 TGAGGGTTGTTGGTCCTTGT 59.077 50.000 0.00 0.00 0.00 3.16
1852 4159 1.133915 TGAGGGTTGTTGGTCCTTGTC 60.134 52.381 0.00 0.00 0.00 3.18
1853 4160 1.143073 GAGGGTTGTTGGTCCTTGTCT 59.857 52.381 0.00 0.00 0.00 3.41
1854 4161 1.569072 AGGGTTGTTGGTCCTTGTCTT 59.431 47.619 0.00 0.00 0.00 3.01
1855 4162 2.024369 AGGGTTGTTGGTCCTTGTCTTT 60.024 45.455 0.00 0.00 0.00 2.52
1856 4163 2.361119 GGGTTGTTGGTCCTTGTCTTTC 59.639 50.000 0.00 0.00 0.00 2.62
1857 4164 2.361119 GGTTGTTGGTCCTTGTCTTTCC 59.639 50.000 0.00 0.00 0.00 3.13
1858 4165 2.358322 TGTTGGTCCTTGTCTTTCCC 57.642 50.000 0.00 0.00 0.00 3.97
1859 4166 1.850345 TGTTGGTCCTTGTCTTTCCCT 59.150 47.619 0.00 0.00 0.00 4.20
1860 4167 2.230660 GTTGGTCCTTGTCTTTCCCTG 58.769 52.381 0.00 0.00 0.00 4.45
1861 4168 0.771127 TGGTCCTTGTCTTTCCCTGG 59.229 55.000 0.00 0.00 0.00 4.45
1862 4169 0.771755 GGTCCTTGTCTTTCCCTGGT 59.228 55.000 0.00 0.00 0.00 4.00
1863 4170 1.271434 GGTCCTTGTCTTTCCCTGGTC 60.271 57.143 0.00 0.00 0.00 4.02
1864 4171 1.420138 GTCCTTGTCTTTCCCTGGTCA 59.580 52.381 0.00 0.00 0.00 4.02
1865 4172 2.131854 TCCTTGTCTTTCCCTGGTCAA 58.868 47.619 0.00 0.00 0.00 3.18
1866 4173 2.106511 TCCTTGTCTTTCCCTGGTCAAG 59.893 50.000 0.00 0.00 34.14 3.02
1867 4174 1.882623 CTTGTCTTTCCCTGGTCAAGC 59.117 52.381 0.00 0.00 0.00 4.01
1868 4175 0.843309 TGTCTTTCCCTGGTCAAGCA 59.157 50.000 0.00 0.00 0.00 3.91
1869 4176 1.239347 GTCTTTCCCTGGTCAAGCAC 58.761 55.000 0.00 0.00 0.00 4.40
1870 4177 1.140312 TCTTTCCCTGGTCAAGCACT 58.860 50.000 0.00 0.00 0.00 4.40
1871 4178 1.494721 TCTTTCCCTGGTCAAGCACTT 59.505 47.619 0.00 0.00 0.00 3.16
1872 4179 2.708861 TCTTTCCCTGGTCAAGCACTTA 59.291 45.455 0.00 0.00 0.00 2.24
1873 4180 3.330701 TCTTTCCCTGGTCAAGCACTTAT 59.669 43.478 0.00 0.00 0.00 1.73
1874 4181 3.350219 TTCCCTGGTCAAGCACTTATC 57.650 47.619 0.00 0.00 0.00 1.75
1875 4182 2.551270 TCCCTGGTCAAGCACTTATCT 58.449 47.619 0.00 0.00 0.00 1.98
1876 4183 2.501723 TCCCTGGTCAAGCACTTATCTC 59.498 50.000 0.00 0.00 0.00 2.75
1877 4184 2.237143 CCCTGGTCAAGCACTTATCTCA 59.763 50.000 0.00 0.00 0.00 3.27
1878 4185 3.118112 CCCTGGTCAAGCACTTATCTCAT 60.118 47.826 0.00 0.00 0.00 2.90
1879 4186 4.125703 CCTGGTCAAGCACTTATCTCATC 58.874 47.826 0.00 0.00 0.00 2.92
1880 4187 4.125703 CTGGTCAAGCACTTATCTCATCC 58.874 47.826 0.00 0.00 0.00 3.51
1881 4188 3.519107 TGGTCAAGCACTTATCTCATCCA 59.481 43.478 0.00 0.00 0.00 3.41
1882 4189 4.019411 TGGTCAAGCACTTATCTCATCCAA 60.019 41.667 0.00 0.00 0.00 3.53
1883 4190 4.574013 GGTCAAGCACTTATCTCATCCAAG 59.426 45.833 0.00 0.00 0.00 3.61
1884 4191 5.181748 GTCAAGCACTTATCTCATCCAAGT 58.818 41.667 0.00 0.00 32.82 3.16
1888 4195 3.209410 CACTTATCTCATCCAAGTGCCC 58.791 50.000 1.20 0.00 41.75 5.36
1889 4196 3.118112 CACTTATCTCATCCAAGTGCCCT 60.118 47.826 1.20 0.00 41.75 5.19
1890 4197 3.135530 ACTTATCTCATCCAAGTGCCCTC 59.864 47.826 0.00 0.00 31.47 4.30
1891 4198 0.842635 ATCTCATCCAAGTGCCCTCC 59.157 55.000 0.00 0.00 0.00 4.30
1892 4199 1.225704 CTCATCCAAGTGCCCTCCC 59.774 63.158 0.00 0.00 0.00 4.30
1893 4200 2.124570 CATCCAAGTGCCCTCCCG 60.125 66.667 0.00 0.00 0.00 5.14
1894 4201 2.610859 ATCCAAGTGCCCTCCCGT 60.611 61.111 0.00 0.00 0.00 5.28
1895 4202 1.306654 ATCCAAGTGCCCTCCCGTA 60.307 57.895 0.00 0.00 0.00 4.02
1896 4203 0.912487 ATCCAAGTGCCCTCCCGTAA 60.912 55.000 0.00 0.00 0.00 3.18
1897 4204 1.376812 CCAAGTGCCCTCCCGTAAC 60.377 63.158 0.00 0.00 0.00 2.50
1898 4205 1.740296 CAAGTGCCCTCCCGTAACG 60.740 63.158 0.00 0.00 0.00 3.18
1899 4206 1.909781 AAGTGCCCTCCCGTAACGA 60.910 57.895 0.00 0.00 0.00 3.85
1900 4207 1.885163 AAGTGCCCTCCCGTAACGAG 61.885 60.000 0.00 0.00 0.00 4.18
1901 4208 3.766691 TGCCCTCCCGTAACGAGC 61.767 66.667 0.00 0.00 0.00 5.03
1902 4209 3.766691 GCCCTCCCGTAACGAGCA 61.767 66.667 0.00 0.00 0.00 4.26
1903 4210 2.494918 CCCTCCCGTAACGAGCAG 59.505 66.667 0.00 0.00 0.00 4.24
1904 4211 2.348888 CCCTCCCGTAACGAGCAGT 61.349 63.158 0.00 0.00 0.00 4.40
1905 4212 1.033746 CCCTCCCGTAACGAGCAGTA 61.034 60.000 0.00 0.00 0.00 2.74
1906 4213 0.381089 CCTCCCGTAACGAGCAGTAG 59.619 60.000 0.00 0.00 0.00 2.57
1907 4214 0.381089 CTCCCGTAACGAGCAGTAGG 59.619 60.000 0.00 0.00 0.00 3.18
1908 4215 0.035152 TCCCGTAACGAGCAGTAGGA 60.035 55.000 0.00 0.00 0.00 2.94
1909 4216 1.030457 CCCGTAACGAGCAGTAGGAT 58.970 55.000 0.00 0.00 0.00 3.24
1910 4217 1.407979 CCCGTAACGAGCAGTAGGATT 59.592 52.381 0.00 0.00 0.00 3.01
1911 4218 2.620115 CCCGTAACGAGCAGTAGGATTA 59.380 50.000 0.00 0.00 0.00 1.75
1912 4219 3.549625 CCCGTAACGAGCAGTAGGATTAC 60.550 52.174 0.00 0.00 0.00 1.89
1913 4220 3.314635 CCGTAACGAGCAGTAGGATTACT 59.685 47.826 0.00 0.00 40.79 2.24
1914 4221 4.525686 CGTAACGAGCAGTAGGATTACTC 58.474 47.826 0.00 0.00 38.05 2.59
1915 4222 4.554330 CGTAACGAGCAGTAGGATTACTCC 60.554 50.000 0.00 0.00 38.05 3.85
1916 4223 2.308690 ACGAGCAGTAGGATTACTCCC 58.691 52.381 0.00 0.00 43.21 4.30
1917 4224 1.614413 CGAGCAGTAGGATTACTCCCC 59.386 57.143 0.00 0.00 43.21 4.81
1918 4225 1.614413 GAGCAGTAGGATTACTCCCCG 59.386 57.143 0.00 0.00 43.21 5.73
1919 4226 1.063114 AGCAGTAGGATTACTCCCCGT 60.063 52.381 0.00 0.00 43.21 5.28
1920 4227 1.068741 GCAGTAGGATTACTCCCCGTG 59.931 57.143 0.00 0.00 43.21 4.94
1921 4228 2.662866 CAGTAGGATTACTCCCCGTGA 58.337 52.381 0.00 0.00 43.21 4.35
1922 4229 3.028850 CAGTAGGATTACTCCCCGTGAA 58.971 50.000 0.00 0.00 43.21 3.18
1923 4230 3.641906 CAGTAGGATTACTCCCCGTGAAT 59.358 47.826 0.00 0.00 43.21 2.57
1924 4231 3.896272 AGTAGGATTACTCCCCGTGAATC 59.104 47.826 0.00 0.00 43.21 2.52
1925 4232 3.047695 AGGATTACTCCCCGTGAATCT 57.952 47.619 0.00 0.00 43.21 2.40
1926 4233 3.385115 AGGATTACTCCCCGTGAATCTT 58.615 45.455 0.00 0.00 43.21 2.40
1927 4234 3.780850 AGGATTACTCCCCGTGAATCTTT 59.219 43.478 0.00 0.00 43.21 2.52
1928 4235 4.227527 AGGATTACTCCCCGTGAATCTTTT 59.772 41.667 0.00 0.00 43.21 2.27
1929 4236 4.575236 GGATTACTCCCCGTGAATCTTTTC 59.425 45.833 0.00 0.00 35.28 2.29
1930 4237 2.094762 ACTCCCCGTGAATCTTTTCG 57.905 50.000 0.00 0.00 34.39 3.46
1931 4238 1.338769 ACTCCCCGTGAATCTTTTCGG 60.339 52.381 0.00 0.00 42.22 4.30
1935 4242 1.369625 CCGTGAATCTTTTCGGGAGG 58.630 55.000 0.00 0.00 39.41 4.30
1936 4243 1.066430 CCGTGAATCTTTTCGGGAGGA 60.066 52.381 0.00 0.00 39.41 3.71
1937 4244 2.614481 CCGTGAATCTTTTCGGGAGGAA 60.614 50.000 0.00 0.00 39.41 3.36
1938 4245 2.415512 CGTGAATCTTTTCGGGAGGAAC 59.584 50.000 0.00 0.00 33.42 3.62
2128 4454 8.539674 GCTCATTTTTACAACATTTTCGAAAGT 58.460 29.630 10.98 5.26 0.00 2.66
2363 4696 1.270305 CGAGCCATATGTCGTCCCAAT 60.270 52.381 7.40 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.680352 TGAGACCCGGTCTGAGCC 60.680 66.667 25.30 10.70 43.53 4.70
12 13 2.701780 CGGTGAGACCCGGTCTGAG 61.702 68.421 25.30 8.99 43.53 3.35
13 14 2.675423 CGGTGAGACCCGGTCTGA 60.675 66.667 25.30 14.31 43.53 3.27
20 21 3.458163 TCGCCATCGGTGAGACCC 61.458 66.667 0.00 0.00 37.29 4.46
21 22 2.202756 GTCGCCATCGGTGAGACC 60.203 66.667 11.58 0.00 43.30 3.85
22 23 1.141881 ATGTCGCCATCGGTGAGAC 59.858 57.895 14.61 14.61 43.30 3.36
23 24 1.141665 CATGTCGCCATCGGTGAGA 59.858 57.895 0.00 0.00 43.30 3.27
24 25 1.884464 CCATGTCGCCATCGGTGAG 60.884 63.158 0.00 0.00 43.30 3.51
25 26 2.186644 CCATGTCGCCATCGGTGA 59.813 61.111 0.00 0.00 40.17 4.02
26 27 3.576356 GCCATGTCGCCATCGGTG 61.576 66.667 0.00 0.00 36.13 4.94
34 35 3.161450 TAGGGAGGGCCATGTCGC 61.161 66.667 6.18 6.51 35.15 5.19
35 36 2.511452 CCTAGGGAGGGCCATGTCG 61.511 68.421 6.18 0.00 39.48 4.35
36 37 3.568578 CCTAGGGAGGGCCATGTC 58.431 66.667 6.18 0.00 39.48 3.06
46 47 0.710588 TGAGTGCTTCTCCCTAGGGA 59.289 55.000 29.25 29.25 42.12 4.20
47 48 1.691434 GATGAGTGCTTCTCCCTAGGG 59.309 57.143 23.22 23.22 42.12 3.53
48 49 1.691434 GGATGAGTGCTTCTCCCTAGG 59.309 57.143 0.06 0.06 42.12 3.02
49 50 2.102252 GTGGATGAGTGCTTCTCCCTAG 59.898 54.545 6.94 0.00 42.12 3.02
50 51 2.111384 GTGGATGAGTGCTTCTCCCTA 58.889 52.381 6.94 0.00 42.12 3.53
51 52 0.908198 GTGGATGAGTGCTTCTCCCT 59.092 55.000 6.94 0.00 42.12 4.20
52 53 0.460987 CGTGGATGAGTGCTTCTCCC 60.461 60.000 6.94 3.54 42.12 4.30
53 54 0.247736 ACGTGGATGAGTGCTTCTCC 59.752 55.000 0.00 4.55 42.12 3.71
54 55 1.634702 GACGTGGATGAGTGCTTCTC 58.365 55.000 0.00 3.22 43.03 2.87
55 56 0.109086 CGACGTGGATGAGTGCTTCT 60.109 55.000 0.00 0.00 0.00 2.85
56 57 0.388649 ACGACGTGGATGAGTGCTTC 60.389 55.000 3.97 0.00 0.00 3.86
57 58 0.033504 AACGACGTGGATGAGTGCTT 59.966 50.000 3.97 0.00 0.00 3.91
58 59 0.388649 GAACGACGTGGATGAGTGCT 60.389 55.000 3.97 0.00 0.00 4.40
59 60 0.666274 TGAACGACGTGGATGAGTGC 60.666 55.000 3.97 0.00 0.00 4.40
60 61 1.340658 CTGAACGACGTGGATGAGTG 58.659 55.000 3.97 0.00 0.00 3.51
61 62 0.243907 CCTGAACGACGTGGATGAGT 59.756 55.000 3.97 0.00 0.00 3.41
62 63 1.078759 GCCTGAACGACGTGGATGAG 61.079 60.000 3.97 0.00 0.00 2.90
63 64 1.080093 GCCTGAACGACGTGGATGA 60.080 57.895 3.97 0.00 0.00 2.92
64 65 2.100631 GGCCTGAACGACGTGGATG 61.101 63.158 3.97 0.00 0.00 3.51
65 66 1.899437 ATGGCCTGAACGACGTGGAT 61.899 55.000 3.32 0.00 0.00 3.41
66 67 2.501223 GATGGCCTGAACGACGTGGA 62.501 60.000 3.32 0.00 0.00 4.02
67 68 2.047274 ATGGCCTGAACGACGTGG 60.047 61.111 3.32 0.00 0.00 4.94
68 69 2.100631 GGATGGCCTGAACGACGTG 61.101 63.158 3.32 0.00 0.00 4.49
69 70 2.107041 TTGGATGGCCTGAACGACGT 62.107 55.000 3.32 0.00 34.31 4.34
70 71 1.361668 CTTGGATGGCCTGAACGACG 61.362 60.000 3.32 0.00 34.31 5.12
71 72 1.026718 CCTTGGATGGCCTGAACGAC 61.027 60.000 3.32 0.00 34.31 4.34
72 73 1.299648 CCTTGGATGGCCTGAACGA 59.700 57.895 3.32 0.00 34.31 3.85
73 74 2.409870 GCCTTGGATGGCCTGAACG 61.410 63.158 3.32 0.00 46.82 3.95
74 75 3.608432 GCCTTGGATGGCCTGAAC 58.392 61.111 3.32 0.00 46.82 3.18
81 82 2.301346 GACCACAATAGCCTTGGATGG 58.699 52.381 0.00 3.88 34.24 3.51
82 83 2.947652 CTGACCACAATAGCCTTGGATG 59.052 50.000 0.00 0.00 34.24 3.51
83 84 2.846206 TCTGACCACAATAGCCTTGGAT 59.154 45.455 0.00 0.00 34.24 3.41
84 85 2.237143 CTCTGACCACAATAGCCTTGGA 59.763 50.000 0.00 0.00 34.24 3.53
85 86 2.636830 CTCTGACCACAATAGCCTTGG 58.363 52.381 2.11 0.00 36.39 3.61
86 87 2.012673 GCTCTGACCACAATAGCCTTG 58.987 52.381 0.00 0.00 32.42 3.61
87 88 1.912043 AGCTCTGACCACAATAGCCTT 59.088 47.619 0.00 0.00 36.42 4.35
88 89 1.209019 CAGCTCTGACCACAATAGCCT 59.791 52.381 0.00 0.00 36.42 4.58
89 90 1.661341 CAGCTCTGACCACAATAGCC 58.339 55.000 0.00 0.00 36.42 3.93
90 91 1.012841 GCAGCTCTGACCACAATAGC 58.987 55.000 0.29 0.00 36.18 2.97
91 92 2.005451 GTGCAGCTCTGACCACAATAG 58.995 52.381 0.29 0.00 0.00 1.73
92 93 1.339055 GGTGCAGCTCTGACCACAATA 60.339 52.381 9.07 0.00 33.74 1.90
93 94 0.607489 GGTGCAGCTCTGACCACAAT 60.607 55.000 9.07 0.00 33.74 2.71
94 95 1.227943 GGTGCAGCTCTGACCACAA 60.228 57.895 9.07 0.00 33.74 3.33
95 96 0.831711 TAGGTGCAGCTCTGACCACA 60.832 55.000 23.94 0.00 35.02 4.17
96 97 0.390472 GTAGGTGCAGCTCTGACCAC 60.390 60.000 23.94 10.21 35.02 4.16
97 98 1.877576 CGTAGGTGCAGCTCTGACCA 61.878 60.000 23.94 0.00 35.02 4.02
98 99 1.153745 CGTAGGTGCAGCTCTGACC 60.154 63.158 23.94 0.00 33.73 4.02
99 100 1.807573 GCGTAGGTGCAGCTCTGAC 60.808 63.158 23.94 14.37 34.15 3.51
100 101 2.275380 TGCGTAGGTGCAGCTCTGA 61.275 57.895 23.94 1.36 40.62 3.27
101 102 2.262603 TGCGTAGGTGCAGCTCTG 59.737 61.111 23.94 16.77 40.62 3.35
107 108 0.901114 TTCCTAGGTGCGTAGGTGCA 60.901 55.000 9.08 0.00 43.95 4.57
108 109 0.459759 GTTCCTAGGTGCGTAGGTGC 60.460 60.000 9.08 7.79 40.64 5.01
109 110 1.135083 CAGTTCCTAGGTGCGTAGGTG 60.135 57.143 9.08 5.60 40.64 4.00
110 111 1.183549 CAGTTCCTAGGTGCGTAGGT 58.816 55.000 9.08 0.00 40.64 3.08
111 112 1.134560 GTCAGTTCCTAGGTGCGTAGG 59.865 57.143 9.08 10.72 41.09 3.18
112 113 1.816835 TGTCAGTTCCTAGGTGCGTAG 59.183 52.381 9.08 0.00 0.00 3.51
113 114 1.913778 TGTCAGTTCCTAGGTGCGTA 58.086 50.000 9.08 0.00 0.00 4.42
114 115 1.267121 ATGTCAGTTCCTAGGTGCGT 58.733 50.000 9.08 0.00 0.00 5.24
115 116 2.002586 CAATGTCAGTTCCTAGGTGCG 58.997 52.381 9.08 0.00 0.00 5.34
116 117 1.740025 GCAATGTCAGTTCCTAGGTGC 59.260 52.381 9.08 3.97 0.00 5.01
117 118 2.026822 AGGCAATGTCAGTTCCTAGGTG 60.027 50.000 9.08 0.00 0.00 4.00
118 119 2.237392 GAGGCAATGTCAGTTCCTAGGT 59.763 50.000 9.08 0.00 0.00 3.08
119 120 2.420687 GGAGGCAATGTCAGTTCCTAGG 60.421 54.545 0.82 0.82 0.00 3.02
120 121 2.503356 AGGAGGCAATGTCAGTTCCTAG 59.497 50.000 0.00 0.00 33.47 3.02
121 122 2.551270 AGGAGGCAATGTCAGTTCCTA 58.449 47.619 0.00 0.00 33.47 2.94
122 123 1.366319 AGGAGGCAATGTCAGTTCCT 58.634 50.000 0.00 0.00 0.00 3.36
123 124 2.206576 AAGGAGGCAATGTCAGTTCC 57.793 50.000 0.00 0.00 0.00 3.62
124 125 2.352127 GCAAAGGAGGCAATGTCAGTTC 60.352 50.000 0.00 0.00 0.00 3.01
125 126 1.615392 GCAAAGGAGGCAATGTCAGTT 59.385 47.619 0.00 0.00 0.00 3.16
126 127 1.251251 GCAAAGGAGGCAATGTCAGT 58.749 50.000 0.00 0.00 0.00 3.41
127 128 1.250328 TGCAAAGGAGGCAATGTCAG 58.750 50.000 0.00 0.00 38.54 3.51
128 129 1.927487 ATGCAAAGGAGGCAATGTCA 58.073 45.000 0.00 0.00 45.60 3.58
129 130 4.660789 ATAATGCAAAGGAGGCAATGTC 57.339 40.909 0.00 0.00 45.60 3.06
130 131 6.777091 TGTATATAATGCAAAGGAGGCAATGT 59.223 34.615 0.00 0.00 45.60 2.71
131 132 7.086376 GTGTATATAATGCAAAGGAGGCAATG 58.914 38.462 0.00 0.00 45.60 2.82
132 133 6.209391 GGTGTATATAATGCAAAGGAGGCAAT 59.791 38.462 0.00 0.00 45.60 3.56
133 134 5.534654 GGTGTATATAATGCAAAGGAGGCAA 59.465 40.000 0.00 0.00 45.60 4.52
134 135 5.070001 GGTGTATATAATGCAAAGGAGGCA 58.930 41.667 0.00 0.00 46.66 4.75
135 136 5.316987 AGGTGTATATAATGCAAAGGAGGC 58.683 41.667 0.00 0.00 0.00 4.70
136 137 7.823745 AAAGGTGTATATAATGCAAAGGAGG 57.176 36.000 0.00 0.00 0.00 4.30
138 139 9.914834 ACTAAAAGGTGTATATAATGCAAAGGA 57.085 29.630 0.00 0.00 0.00 3.36
143 144 9.688091 TGGAAACTAAAAGGTGTATATAATGCA 57.312 29.630 0.00 0.00 0.00 3.96
144 145 9.946165 GTGGAAACTAAAAGGTGTATATAATGC 57.054 33.333 0.00 0.00 0.00 3.56
149 150 9.396022 CAGATGTGGAAACTAAAAGGTGTATAT 57.604 33.333 0.00 0.00 0.00 0.86
150 151 7.335924 GCAGATGTGGAAACTAAAAGGTGTATA 59.664 37.037 0.00 0.00 0.00 1.47
151 152 6.151144 GCAGATGTGGAAACTAAAAGGTGTAT 59.849 38.462 0.00 0.00 0.00 2.29
152 153 5.472137 GCAGATGTGGAAACTAAAAGGTGTA 59.528 40.000 0.00 0.00 0.00 2.90
153 154 4.278419 GCAGATGTGGAAACTAAAAGGTGT 59.722 41.667 0.00 0.00 0.00 4.16
154 155 4.520492 AGCAGATGTGGAAACTAAAAGGTG 59.480 41.667 0.00 0.00 0.00 4.00
155 156 4.520492 CAGCAGATGTGGAAACTAAAAGGT 59.480 41.667 0.00 0.00 0.00 3.50
156 157 4.616835 GCAGCAGATGTGGAAACTAAAAGG 60.617 45.833 0.00 0.00 0.00 3.11
157 158 4.022935 TGCAGCAGATGTGGAAACTAAAAG 60.023 41.667 0.00 0.00 0.00 2.27
158 159 3.888323 TGCAGCAGATGTGGAAACTAAAA 59.112 39.130 0.00 0.00 0.00 1.52
159 160 3.485394 TGCAGCAGATGTGGAAACTAAA 58.515 40.909 0.00 0.00 0.00 1.85
160 161 3.076621 CTGCAGCAGATGTGGAAACTAA 58.923 45.455 18.42 0.00 32.44 2.24
161 162 2.302733 TCTGCAGCAGATGTGGAAACTA 59.697 45.455 21.85 0.00 35.39 2.24
162 163 1.072806 TCTGCAGCAGATGTGGAAACT 59.927 47.619 21.85 0.00 35.39 2.66
163 164 1.527034 TCTGCAGCAGATGTGGAAAC 58.473 50.000 21.85 0.00 35.39 2.78
164 165 2.275134 TTCTGCAGCAGATGTGGAAA 57.725 45.000 25.94 6.26 40.39 3.13
165 166 2.275134 TTTCTGCAGCAGATGTGGAA 57.725 45.000 25.94 13.74 40.39 3.53
166 167 2.275134 TTTTCTGCAGCAGATGTGGA 57.725 45.000 25.94 7.83 40.39 4.02
183 184 8.974060 TGTACTCTAAAAGGTCTCATGTTTTT 57.026 30.769 0.00 0.00 0.00 1.94
184 185 9.220767 GATGTACTCTAAAAGGTCTCATGTTTT 57.779 33.333 0.00 0.00 0.00 2.43
185 186 8.375506 TGATGTACTCTAAAAGGTCTCATGTTT 58.624 33.333 0.00 0.00 0.00 2.83
186 187 7.907389 TGATGTACTCTAAAAGGTCTCATGTT 58.093 34.615 0.00 0.00 0.00 2.71
187 188 7.482169 TGATGTACTCTAAAAGGTCTCATGT 57.518 36.000 0.00 0.00 0.00 3.21
188 189 8.037758 ACTTGATGTACTCTAAAAGGTCTCATG 58.962 37.037 0.00 0.00 0.00 3.07
189 190 8.140112 ACTTGATGTACTCTAAAAGGTCTCAT 57.860 34.615 0.00 0.00 0.00 2.90
190 191 7.451877 AGACTTGATGTACTCTAAAAGGTCTCA 59.548 37.037 0.00 0.00 0.00 3.27
191 192 7.832769 AGACTTGATGTACTCTAAAAGGTCTC 58.167 38.462 0.00 0.00 0.00 3.36
192 193 7.784470 AGACTTGATGTACTCTAAAAGGTCT 57.216 36.000 0.00 0.00 0.00 3.85
200 201 8.568794 CGATCCAAATAGACTTGATGTACTCTA 58.431 37.037 0.00 0.00 0.00 2.43
201 202 7.068839 ACGATCCAAATAGACTTGATGTACTCT 59.931 37.037 0.00 0.00 0.00 3.24
202 203 7.203910 ACGATCCAAATAGACTTGATGTACTC 58.796 38.462 0.00 0.00 0.00 2.59
203 204 7.113658 ACGATCCAAATAGACTTGATGTACT 57.886 36.000 0.00 0.00 0.00 2.73
204 205 6.421202 GGACGATCCAAATAGACTTGATGTAC 59.579 42.308 0.00 0.00 36.28 2.90
205 206 6.097696 TGGACGATCCAAATAGACTTGATGTA 59.902 38.462 4.51 0.00 45.00 2.29
206 207 5.104941 TGGACGATCCAAATAGACTTGATGT 60.105 40.000 4.51 0.00 45.00 3.06
207 208 5.359756 TGGACGATCCAAATAGACTTGATG 58.640 41.667 4.51 0.00 45.00 3.07
208 209 5.614324 TGGACGATCCAAATAGACTTGAT 57.386 39.130 4.51 0.00 45.00 2.57
221 222 4.196193 TCAACCACATAAATGGACGATCC 58.804 43.478 0.00 0.00 43.02 3.36
222 223 5.220854 CCTTCAACCACATAAATGGACGATC 60.221 44.000 0.00 0.00 43.02 3.69
223 224 4.640201 CCTTCAACCACATAAATGGACGAT 59.360 41.667 0.00 0.00 43.02 3.73
224 225 4.006989 CCTTCAACCACATAAATGGACGA 58.993 43.478 0.00 0.00 43.02 4.20
225 226 3.128589 CCCTTCAACCACATAAATGGACG 59.871 47.826 0.00 0.00 43.02 4.79
226 227 3.119137 GCCCTTCAACCACATAAATGGAC 60.119 47.826 0.00 0.00 43.02 4.02
227 228 3.096092 GCCCTTCAACCACATAAATGGA 58.904 45.455 0.00 0.00 43.02 3.41
228 229 2.168313 GGCCCTTCAACCACATAAATGG 59.832 50.000 0.00 0.00 46.10 3.16
229 230 2.168313 GGGCCCTTCAACCACATAAATG 59.832 50.000 17.04 0.00 0.00 2.32
230 231 2.225496 TGGGCCCTTCAACCACATAAAT 60.225 45.455 25.70 0.00 0.00 1.40
231 232 1.148027 TGGGCCCTTCAACCACATAAA 59.852 47.619 25.70 0.00 0.00 1.40
232 233 0.780637 TGGGCCCTTCAACCACATAA 59.219 50.000 25.70 0.00 0.00 1.90
233 234 0.331278 CTGGGCCCTTCAACCACATA 59.669 55.000 25.70 0.00 0.00 2.29
234 235 1.077265 CTGGGCCCTTCAACCACAT 59.923 57.895 25.70 0.00 0.00 3.21
235 236 1.434513 ATCTGGGCCCTTCAACCACA 61.435 55.000 25.70 0.00 0.00 4.17
236 237 0.967380 CATCTGGGCCCTTCAACCAC 60.967 60.000 25.70 0.00 0.00 4.16
237 238 1.139498 TCATCTGGGCCCTTCAACCA 61.139 55.000 25.70 0.00 0.00 3.67
238 239 0.394899 CTCATCTGGGCCCTTCAACC 60.395 60.000 25.70 0.00 0.00 3.77
239 240 1.034292 GCTCATCTGGGCCCTTCAAC 61.034 60.000 25.70 2.43 0.00 3.18
240 241 1.304282 GCTCATCTGGGCCCTTCAA 59.696 57.895 25.70 5.83 0.00 2.69
241 242 2.683465 GGCTCATCTGGGCCCTTCA 61.683 63.158 25.70 6.87 42.30 3.02
242 243 2.194326 GGCTCATCTGGGCCCTTC 59.806 66.667 25.70 3.68 42.30 3.46
247 248 2.104792 TGTAGTATTGGCTCATCTGGGC 59.895 50.000 0.00 0.00 0.00 5.36
248 249 3.389329 ACTGTAGTATTGGCTCATCTGGG 59.611 47.826 0.00 0.00 0.00 4.45
249 250 4.679373 ACTGTAGTATTGGCTCATCTGG 57.321 45.455 0.00 0.00 0.00 3.86
250 251 6.641169 TCTACTGTAGTATTGGCTCATCTG 57.359 41.667 14.11 0.00 0.00 2.90
251 252 7.847711 AATCTACTGTAGTATTGGCTCATCT 57.152 36.000 14.11 0.00 0.00 2.90
252 253 8.894768 AAAATCTACTGTAGTATTGGCTCATC 57.105 34.615 14.11 0.00 0.00 2.92
253 254 7.653713 CGAAAATCTACTGTAGTATTGGCTCAT 59.346 37.037 14.11 0.00 0.00 2.90
254 255 6.978659 CGAAAATCTACTGTAGTATTGGCTCA 59.021 38.462 14.11 0.00 0.00 4.26
255 256 6.421202 CCGAAAATCTACTGTAGTATTGGCTC 59.579 42.308 14.11 9.30 0.00 4.70
256 257 6.127140 ACCGAAAATCTACTGTAGTATTGGCT 60.127 38.462 14.11 3.29 0.00 4.75
257 258 6.047231 ACCGAAAATCTACTGTAGTATTGGC 58.953 40.000 14.11 7.88 0.00 4.52
258 259 8.411683 ACTACCGAAAATCTACTGTAGTATTGG 58.588 37.037 14.11 13.05 36.09 3.16
276 277 9.520515 CCCCTAACTAACTAATATACTACCGAA 57.479 37.037 0.00 0.00 0.00 4.30
277 278 7.611855 GCCCCTAACTAACTAATATACTACCGA 59.388 40.741 0.00 0.00 0.00 4.69
278 279 7.394359 TGCCCCTAACTAACTAATATACTACCG 59.606 40.741 0.00 0.00 0.00 4.02
279 280 8.655935 TGCCCCTAACTAACTAATATACTACC 57.344 38.462 0.00 0.00 0.00 3.18
286 287 8.765517 GCCTATAATGCCCCTAACTAACTAATA 58.234 37.037 0.00 0.00 0.00 0.98
287 288 7.238933 TGCCTATAATGCCCCTAACTAACTAAT 59.761 37.037 0.00 0.00 0.00 1.73
288 289 6.559539 TGCCTATAATGCCCCTAACTAACTAA 59.440 38.462 0.00 0.00 0.00 2.24
289 290 6.086095 TGCCTATAATGCCCCTAACTAACTA 58.914 40.000 0.00 0.00 0.00 2.24
290 291 4.911522 TGCCTATAATGCCCCTAACTAACT 59.088 41.667 0.00 0.00 0.00 2.24
291 292 5.221864 ACTGCCTATAATGCCCCTAACTAAC 60.222 44.000 0.00 0.00 0.00 2.34
292 293 4.911522 ACTGCCTATAATGCCCCTAACTAA 59.088 41.667 0.00 0.00 0.00 2.24
293 294 4.499472 ACTGCCTATAATGCCCCTAACTA 58.501 43.478 0.00 0.00 0.00 2.24
294 295 3.327439 ACTGCCTATAATGCCCCTAACT 58.673 45.455 0.00 0.00 0.00 2.24
295 296 3.790089 ACTGCCTATAATGCCCCTAAC 57.210 47.619 0.00 0.00 0.00 2.34
296 297 3.719479 TGAACTGCCTATAATGCCCCTAA 59.281 43.478 0.00 0.00 0.00 2.69
297 298 3.322862 TGAACTGCCTATAATGCCCCTA 58.677 45.455 0.00 0.00 0.00 3.53
298 299 2.135189 TGAACTGCCTATAATGCCCCT 58.865 47.619 0.00 0.00 0.00 4.79
299 300 2.656947 TGAACTGCCTATAATGCCCC 57.343 50.000 0.00 0.00 0.00 5.80
300 301 3.891366 ACAATGAACTGCCTATAATGCCC 59.109 43.478 0.00 0.00 0.00 5.36
301 302 5.520376 AACAATGAACTGCCTATAATGCC 57.480 39.130 0.00 0.00 0.00 4.40
302 303 9.533253 AAATAAACAATGAACTGCCTATAATGC 57.467 29.630 0.00 0.00 0.00 3.56
308 309 9.461312 ACAGATAAATAAACAATGAACTGCCTA 57.539 29.630 0.00 0.00 0.00 3.93
309 310 8.353423 ACAGATAAATAAACAATGAACTGCCT 57.647 30.769 0.00 0.00 0.00 4.75
310 311 8.986477 AACAGATAAATAAACAATGAACTGCC 57.014 30.769 0.00 0.00 0.00 4.85
330 331 8.523658 CCTATCCACGAGATTGATATAAACAGA 58.476 37.037 0.00 0.00 36.33 3.41
331 332 8.307483 ACCTATCCACGAGATTGATATAAACAG 58.693 37.037 0.00 0.00 36.33 3.16
332 333 8.190326 ACCTATCCACGAGATTGATATAAACA 57.810 34.615 0.00 0.00 36.33 2.83
333 334 9.141400 GAACCTATCCACGAGATTGATATAAAC 57.859 37.037 0.00 0.00 36.33 2.01
356 357 2.106683 CCTTGACGATGGCGGGAAC 61.107 63.158 0.00 0.00 43.17 3.62
357 358 2.267642 CCTTGACGATGGCGGGAA 59.732 61.111 0.00 0.00 43.17 3.97
358 359 3.781307 CCCTTGACGATGGCGGGA 61.781 66.667 0.00 0.00 43.17 5.14
359 360 4.856801 CCCCTTGACGATGGCGGG 62.857 72.222 0.00 0.00 43.17 6.13
597 598 6.578163 TTAGGTTTGCATTTACCTGTAACC 57.422 37.500 20.15 12.77 44.34 2.85
598 599 8.520351 AGATTTAGGTTTGCATTTACCTGTAAC 58.480 33.333 20.15 5.06 44.34 2.50
644 645 8.721478 ACATGATACAAGTTTACATTCTGACAC 58.279 33.333 0.00 0.00 0.00 3.67
736 737 9.787435 AGTGTTGTTACATGTCTAATTTTCCTA 57.213 29.630 0.00 0.00 36.50 2.94
737 738 8.691661 AGTGTTGTTACATGTCTAATTTTCCT 57.308 30.769 0.00 0.00 36.50 3.36
738 739 9.821662 GTAGTGTTGTTACATGTCTAATTTTCC 57.178 33.333 0.00 0.00 36.50 3.13
743 744 8.946085 CCAATGTAGTGTTGTTACATGTCTAAT 58.054 33.333 0.00 0.00 40.01 1.73
744 745 7.934665 ACCAATGTAGTGTTGTTACATGTCTAA 59.065 33.333 0.00 0.00 40.01 2.10
745 746 7.446769 ACCAATGTAGTGTTGTTACATGTCTA 58.553 34.615 0.00 0.00 40.01 2.59
746 747 6.296026 ACCAATGTAGTGTTGTTACATGTCT 58.704 36.000 0.00 0.00 40.01 3.41
747 748 6.554334 ACCAATGTAGTGTTGTTACATGTC 57.446 37.500 0.00 0.00 40.01 3.06
748 749 7.446769 TCTACCAATGTAGTGTTGTTACATGT 58.553 34.615 2.69 2.69 44.08 3.21
749 750 7.899178 TCTACCAATGTAGTGTTGTTACATG 57.101 36.000 0.00 0.00 44.08 3.21
767 768 9.594478 CGTTGCCACAATATATATATTCTACCA 57.406 33.333 13.96 7.75 30.91 3.25
768 769 9.595823 ACGTTGCCACAATATATATATTCTACC 57.404 33.333 13.96 5.70 30.91 3.18
784 785 2.535012 TCACTTGATACGTTGCCACA 57.465 45.000 0.00 0.00 0.00 4.17
785 786 3.889196 TTTCACTTGATACGTTGCCAC 57.111 42.857 0.00 0.00 0.00 5.01
878 879 3.461773 GCTGGTGGAGCTCCGCTA 61.462 66.667 38.00 33.27 45.21 4.26
1362 1774 2.329379 CTCGCGAGCTAAAAAGTCACT 58.671 47.619 25.07 0.00 0.00 3.41
1378 1790 1.442857 CGTGACTGACTCACCTCGC 60.443 63.158 0.00 0.00 46.01 5.03
1379 1791 1.210413 CCGTGACTGACTCACCTCG 59.790 63.158 0.00 0.00 46.01 4.63
1380 1792 1.080434 GCCGTGACTGACTCACCTC 60.080 63.158 0.00 0.00 46.01 3.85
1381 1793 2.574955 GGCCGTGACTGACTCACCT 61.575 63.158 0.00 0.00 46.01 4.00
1382 1794 2.048127 GGCCGTGACTGACTCACC 60.048 66.667 0.00 0.00 46.01 4.02
1383 1795 1.373497 CAGGCCGTGACTGACTCAC 60.373 63.158 0.00 0.00 42.14 3.51
1431 3313 1.848932 CTGATCGCAATGGCCGATGG 61.849 60.000 9.39 0.00 34.83 3.51
1432 3314 1.572941 CTGATCGCAATGGCCGATG 59.427 57.895 0.00 0.00 34.83 3.84
1433 3315 2.256591 GCTGATCGCAATGGCCGAT 61.257 57.895 0.00 0.00 38.92 4.18
1434 3316 2.896854 GCTGATCGCAATGGCCGA 60.897 61.111 0.00 0.00 38.92 5.54
1435 3317 4.303603 CGCTGATCGCAATGGCCG 62.304 66.667 0.00 0.00 39.08 6.13
1436 3318 1.992233 TTTCGCTGATCGCAATGGCC 61.992 55.000 0.00 0.00 39.08 5.36
1437 3319 0.863119 GTTTCGCTGATCGCAATGGC 60.863 55.000 9.58 0.00 39.08 4.40
1442 3324 0.940833 TTTGTGTTTCGCTGATCGCA 59.059 45.000 9.58 0.00 39.08 5.10
1457 3339 3.256631 GTCTTTCTGGCACCATGATTTGT 59.743 43.478 0.00 0.00 0.00 2.83
1556 3861 2.824041 CCTTACGCCGGCTGCAAT 60.824 61.111 26.68 7.07 41.33 3.56
1609 3914 5.220739 GGATTCGTCTTCAATCCTGTCATTG 60.221 44.000 5.74 0.00 44.25 2.82
1610 3915 4.878397 GGATTCGTCTTCAATCCTGTCATT 59.122 41.667 5.74 0.00 44.25 2.57
1613 3918 3.861840 TGGATTCGTCTTCAATCCTGTC 58.138 45.455 12.51 0.00 46.74 3.51
1650 3955 0.765510 CCAACTAGGGCCATAGTCCC 59.234 60.000 29.01 0.00 39.27 4.46
1666 3971 1.082194 ACCCCCTCTCCTATTCACCAA 59.918 52.381 0.00 0.00 0.00 3.67
1670 3975 3.010138 CACAAAACCCCCTCTCCTATTCA 59.990 47.826 0.00 0.00 0.00 2.57
1724 4031 1.537202 GAACGGCATCTGCTCAAAAGT 59.463 47.619 1.70 0.00 41.70 2.66
1726 4033 0.881118 GGAACGGCATCTGCTCAAAA 59.119 50.000 1.70 0.00 41.70 2.44
1745 4052 1.137086 CCACCTCGTTGGATCTGTAGG 59.863 57.143 4.38 0.00 39.24 3.18
1760 4067 4.453480 TCTGAAAACTTTGATCCCACCT 57.547 40.909 0.00 0.00 0.00 4.00
1777 4084 9.520204 GAAAACTTGATTTCAGTGAAAATCTGA 57.480 29.630 21.57 11.24 43.17 3.27
1813 4120 6.490040 ACCCTCATGTAACAATATATGGCAAC 59.510 38.462 0.00 0.00 32.98 4.17
1815 4122 6.199557 ACCCTCATGTAACAATATATGGCA 57.800 37.500 0.00 0.00 32.98 4.92
1821 4128 6.252995 ACCAACAACCCTCATGTAACAATAT 58.747 36.000 0.00 0.00 0.00 1.28
1822 4129 5.636123 ACCAACAACCCTCATGTAACAATA 58.364 37.500 0.00 0.00 0.00 1.90
1823 4130 4.479158 ACCAACAACCCTCATGTAACAAT 58.521 39.130 0.00 0.00 0.00 2.71
1824 4131 3.886505 GACCAACAACCCTCATGTAACAA 59.113 43.478 0.00 0.00 0.00 2.83
1825 4132 3.482436 GACCAACAACCCTCATGTAACA 58.518 45.455 0.00 0.00 0.00 2.41
1826 4133 2.817844 GGACCAACAACCCTCATGTAAC 59.182 50.000 0.00 0.00 0.00 2.50
1827 4134 2.714250 AGGACCAACAACCCTCATGTAA 59.286 45.455 0.00 0.00 0.00 2.41
1828 4135 2.344592 AGGACCAACAACCCTCATGTA 58.655 47.619 0.00 0.00 0.00 2.29
1829 4136 1.149101 AGGACCAACAACCCTCATGT 58.851 50.000 0.00 0.00 0.00 3.21
1830 4137 1.888512 CAAGGACCAACAACCCTCATG 59.111 52.381 0.00 0.00 0.00 3.07
1831 4138 1.499007 ACAAGGACCAACAACCCTCAT 59.501 47.619 0.00 0.00 0.00 2.90
1832 4139 0.923358 ACAAGGACCAACAACCCTCA 59.077 50.000 0.00 0.00 0.00 3.86
1833 4140 1.143073 AGACAAGGACCAACAACCCTC 59.857 52.381 0.00 0.00 0.00 4.30
1834 4141 1.222567 AGACAAGGACCAACAACCCT 58.777 50.000 0.00 0.00 0.00 4.34
1835 4142 2.067365 AAGACAAGGACCAACAACCC 57.933 50.000 0.00 0.00 0.00 4.11
1836 4143 2.361119 GGAAAGACAAGGACCAACAACC 59.639 50.000 0.00 0.00 0.00 3.77
1837 4144 2.361119 GGGAAAGACAAGGACCAACAAC 59.639 50.000 0.00 0.00 0.00 3.32
1838 4145 2.243736 AGGGAAAGACAAGGACCAACAA 59.756 45.455 0.00 0.00 0.00 2.83
1839 4146 1.850345 AGGGAAAGACAAGGACCAACA 59.150 47.619 0.00 0.00 0.00 3.33
1840 4147 2.230660 CAGGGAAAGACAAGGACCAAC 58.769 52.381 0.00 0.00 0.00 3.77
1841 4148 1.144913 CCAGGGAAAGACAAGGACCAA 59.855 52.381 0.00 0.00 0.00 3.67
1842 4149 0.771127 CCAGGGAAAGACAAGGACCA 59.229 55.000 0.00 0.00 0.00 4.02
1843 4150 0.771755 ACCAGGGAAAGACAAGGACC 59.228 55.000 0.00 0.00 0.00 4.46
1844 4151 1.420138 TGACCAGGGAAAGACAAGGAC 59.580 52.381 0.00 0.00 0.00 3.85
1845 4152 1.814429 TGACCAGGGAAAGACAAGGA 58.186 50.000 0.00 0.00 0.00 3.36
1846 4153 2.508526 CTTGACCAGGGAAAGACAAGG 58.491 52.381 0.00 0.00 33.52 3.61
1847 4154 1.882623 GCTTGACCAGGGAAAGACAAG 59.117 52.381 7.43 0.00 38.07 3.16
1848 4155 1.214175 TGCTTGACCAGGGAAAGACAA 59.786 47.619 7.43 0.00 0.00 3.18
1849 4156 0.843309 TGCTTGACCAGGGAAAGACA 59.157 50.000 7.43 3.12 0.00 3.41
1850 4157 1.202818 AGTGCTTGACCAGGGAAAGAC 60.203 52.381 7.43 3.80 0.00 3.01
1851 4158 1.140312 AGTGCTTGACCAGGGAAAGA 58.860 50.000 7.43 0.00 0.00 2.52
1852 4159 1.986882 AAGTGCTTGACCAGGGAAAG 58.013 50.000 0.00 0.00 0.00 2.62
1853 4160 3.330701 AGATAAGTGCTTGACCAGGGAAA 59.669 43.478 0.00 0.00 0.00 3.13
1854 4161 2.912956 AGATAAGTGCTTGACCAGGGAA 59.087 45.455 0.00 0.00 0.00 3.97
1855 4162 2.501723 GAGATAAGTGCTTGACCAGGGA 59.498 50.000 0.00 0.00 0.00 4.20
1856 4163 2.237143 TGAGATAAGTGCTTGACCAGGG 59.763 50.000 0.00 0.00 0.00 4.45
1857 4164 3.616956 TGAGATAAGTGCTTGACCAGG 57.383 47.619 0.00 0.00 0.00 4.45
1858 4165 4.125703 GGATGAGATAAGTGCTTGACCAG 58.874 47.826 0.00 0.00 0.00 4.00
1859 4166 3.519107 TGGATGAGATAAGTGCTTGACCA 59.481 43.478 0.00 0.00 0.00 4.02
1860 4167 4.142609 TGGATGAGATAAGTGCTTGACC 57.857 45.455 0.00 0.00 0.00 4.02
1861 4168 5.064452 CACTTGGATGAGATAAGTGCTTGAC 59.936 44.000 0.00 0.00 43.06 3.18
1862 4169 5.181009 CACTTGGATGAGATAAGTGCTTGA 58.819 41.667 0.00 0.00 43.06 3.02
1863 4170 5.481200 CACTTGGATGAGATAAGTGCTTG 57.519 43.478 0.00 0.00 43.06 4.01
1868 4175 3.118531 AGGGCACTTGGATGAGATAAGT 58.881 45.455 0.00 0.00 35.18 2.24
1869 4176 3.495806 GGAGGGCACTTGGATGAGATAAG 60.496 52.174 0.00 0.00 0.00 1.73
1870 4177 2.439507 GGAGGGCACTTGGATGAGATAA 59.560 50.000 0.00 0.00 0.00 1.75
1871 4178 2.050144 GGAGGGCACTTGGATGAGATA 58.950 52.381 0.00 0.00 0.00 1.98
1872 4179 0.842635 GGAGGGCACTTGGATGAGAT 59.157 55.000 0.00 0.00 0.00 2.75
1873 4180 1.274703 GGGAGGGCACTTGGATGAGA 61.275 60.000 0.00 0.00 0.00 3.27
1874 4181 1.225704 GGGAGGGCACTTGGATGAG 59.774 63.158 0.00 0.00 0.00 2.90
1875 4182 2.669133 CGGGAGGGCACTTGGATGA 61.669 63.158 0.00 0.00 0.00 2.92
1876 4183 1.622607 TACGGGAGGGCACTTGGATG 61.623 60.000 0.00 0.00 0.00 3.51
1877 4184 0.912487 TTACGGGAGGGCACTTGGAT 60.912 55.000 0.00 0.00 0.00 3.41
1878 4185 1.536907 TTACGGGAGGGCACTTGGA 60.537 57.895 0.00 0.00 0.00 3.53
1879 4186 1.376812 GTTACGGGAGGGCACTTGG 60.377 63.158 0.00 0.00 0.00 3.61
1880 4187 1.740296 CGTTACGGGAGGGCACTTG 60.740 63.158 0.00 0.00 0.00 3.16
1881 4188 1.885163 CTCGTTACGGGAGGGCACTT 61.885 60.000 0.00 0.00 0.00 3.16
1882 4189 2.283388 TCGTTACGGGAGGGCACT 60.283 61.111 4.53 0.00 0.00 4.40
1883 4190 2.183555 CTCGTTACGGGAGGGCAC 59.816 66.667 0.00 0.00 0.00 5.01
1884 4191 3.766691 GCTCGTTACGGGAGGGCA 61.767 66.667 9.51 0.00 32.10 5.36
1885 4192 3.718210 CTGCTCGTTACGGGAGGGC 62.718 68.421 9.51 4.87 32.10 5.19
1886 4193 1.033746 TACTGCTCGTTACGGGAGGG 61.034 60.000 9.51 0.00 32.10 4.30
1887 4194 0.381089 CTACTGCTCGTTACGGGAGG 59.619 60.000 9.51 1.98 32.10 4.30
1888 4195 0.381089 CCTACTGCTCGTTACGGGAG 59.619 60.000 9.51 10.79 34.62 4.30
1889 4196 0.035152 TCCTACTGCTCGTTACGGGA 60.035 55.000 9.51 0.04 0.00 5.14
1890 4197 1.030457 ATCCTACTGCTCGTTACGGG 58.970 55.000 4.53 1.39 0.00 5.28
1891 4198 2.865343 AATCCTACTGCTCGTTACGG 57.135 50.000 4.53 0.00 0.00 4.02
1892 4199 4.525686 GAGTAATCCTACTGCTCGTTACG 58.474 47.826 0.00 0.00 38.55 3.18
1893 4200 4.261530 GGGAGTAATCCTACTGCTCGTTAC 60.262 50.000 9.45 0.00 43.91 2.50
1894 4201 3.887716 GGGAGTAATCCTACTGCTCGTTA 59.112 47.826 9.45 0.00 43.91 3.18
1895 4202 2.694109 GGGAGTAATCCTACTGCTCGTT 59.306 50.000 9.45 0.00 43.91 3.85
1896 4203 2.308690 GGGAGTAATCCTACTGCTCGT 58.691 52.381 9.45 0.00 43.91 4.18
1897 4204 1.614413 GGGGAGTAATCCTACTGCTCG 59.386 57.143 9.45 0.00 43.91 5.03
1898 4205 1.614413 CGGGGAGTAATCCTACTGCTC 59.386 57.143 9.45 0.00 43.91 4.26
1899 4206 1.063114 ACGGGGAGTAATCCTACTGCT 60.063 52.381 9.45 0.00 43.91 4.24
1900 4207 1.068741 CACGGGGAGTAATCCTACTGC 59.931 57.143 9.45 0.00 43.76 4.40
1901 4208 2.662866 TCACGGGGAGTAATCCTACTG 58.337 52.381 9.45 0.93 38.55 2.74
1902 4209 3.393426 TTCACGGGGAGTAATCCTACT 57.607 47.619 9.45 0.00 41.28 2.57
1903 4210 3.896272 AGATTCACGGGGAGTAATCCTAC 59.104 47.826 9.45 1.88 0.00 3.18
1904 4211 4.194678 AGATTCACGGGGAGTAATCCTA 57.805 45.455 9.45 0.00 0.00 2.94
1905 4212 3.047695 AGATTCACGGGGAGTAATCCT 57.952 47.619 9.45 0.00 0.00 3.24
1906 4213 3.840124 AAGATTCACGGGGAGTAATCC 57.160 47.619 0.00 0.00 0.00 3.01
1907 4214 4.270325 CGAAAAGATTCACGGGGAGTAATC 59.730 45.833 0.00 0.00 35.15 1.75
1908 4215 4.189231 CGAAAAGATTCACGGGGAGTAAT 58.811 43.478 0.00 0.00 35.15 1.89
1909 4216 3.592059 CGAAAAGATTCACGGGGAGTAA 58.408 45.455 0.00 0.00 35.15 2.24
1910 4217 2.093869 CCGAAAAGATTCACGGGGAGTA 60.094 50.000 0.00 0.00 41.41 2.59
1911 4218 1.338769 CCGAAAAGATTCACGGGGAGT 60.339 52.381 0.00 0.00 41.41 3.85
1912 4219 1.369625 CCGAAAAGATTCACGGGGAG 58.630 55.000 0.00 0.00 41.41 4.30
1913 4220 3.543884 CCGAAAAGATTCACGGGGA 57.456 52.632 0.00 0.00 41.41 4.81
1916 4223 1.066430 TCCTCCCGAAAAGATTCACGG 60.066 52.381 0.00 0.00 44.16 4.94
1917 4224 2.380084 TCCTCCCGAAAAGATTCACG 57.620 50.000 0.00 0.00 35.15 4.35
1918 4225 3.676093 AGTTCCTCCCGAAAAGATTCAC 58.324 45.455 0.00 0.00 35.15 3.18
1919 4226 5.247564 TCTTAGTTCCTCCCGAAAAGATTCA 59.752 40.000 0.00 0.00 35.15 2.57
1920 4227 5.731591 TCTTAGTTCCTCCCGAAAAGATTC 58.268 41.667 0.00 0.00 27.23 2.52
1921 4228 5.735766 CTCTTAGTTCCTCCCGAAAAGATT 58.264 41.667 0.00 0.00 30.50 2.40
1922 4229 4.383226 GCTCTTAGTTCCTCCCGAAAAGAT 60.383 45.833 0.00 0.00 30.50 2.40
1923 4230 3.056035 GCTCTTAGTTCCTCCCGAAAAGA 60.056 47.826 0.00 0.00 30.26 2.52
1924 4231 3.263261 GCTCTTAGTTCCTCCCGAAAAG 58.737 50.000 0.00 0.00 30.39 2.27
1925 4232 2.635915 TGCTCTTAGTTCCTCCCGAAAA 59.364 45.455 0.00 0.00 30.39 2.29
1926 4233 2.253610 TGCTCTTAGTTCCTCCCGAAA 58.746 47.619 0.00 0.00 30.39 3.46
1927 4234 1.933021 TGCTCTTAGTTCCTCCCGAA 58.067 50.000 0.00 0.00 0.00 4.30
1928 4235 2.032620 GATGCTCTTAGTTCCTCCCGA 58.967 52.381 0.00 0.00 0.00 5.14
1929 4236 2.035321 GAGATGCTCTTAGTTCCTCCCG 59.965 54.545 0.00 0.00 0.00 5.14
1930 4237 2.367241 GGAGATGCTCTTAGTTCCTCCC 59.633 54.545 0.00 0.00 34.25 4.30
1931 4238 3.034635 TGGAGATGCTCTTAGTTCCTCC 58.965 50.000 0.00 0.00 39.20 4.30
1932 4239 4.081420 TGTTGGAGATGCTCTTAGTTCCTC 60.081 45.833 0.00 0.00 0.00 3.71
1933 4240 3.840666 TGTTGGAGATGCTCTTAGTTCCT 59.159 43.478 0.00 0.00 0.00 3.36
1934 4241 4.187694 CTGTTGGAGATGCTCTTAGTTCC 58.812 47.826 0.00 0.00 0.00 3.62
1935 4242 4.187694 CCTGTTGGAGATGCTCTTAGTTC 58.812 47.826 0.00 0.00 34.57 3.01
1936 4243 3.620966 GCCTGTTGGAGATGCTCTTAGTT 60.621 47.826 0.00 0.00 34.57 2.24
1937 4244 2.093235 GCCTGTTGGAGATGCTCTTAGT 60.093 50.000 0.00 0.00 34.57 2.24
1938 4245 2.559440 GCCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 34.57 2.18
2202 4529 7.596995 GCTTTCGAACTATCTATCTAGTTGCAT 59.403 37.037 0.00 0.00 41.00 3.96
2301 4628 2.369860 GAGGATGGTGATGATGGTAGCA 59.630 50.000 0.00 0.00 0.00 3.49
2363 4696 2.292292 TCTTCACGTCAGACGATGAACA 59.708 45.455 29.53 17.74 46.05 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.