Multiple sequence alignment - TraesCS2A01G188800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G188800 chr2A 100.000 2875 0 0 1 2875 154845590 154842716 0.000000e+00 5310.0
1 TraesCS2A01G188800 chr2A 100.000 414 0 0 3058 3471 154842533 154842120 0.000000e+00 765.0
2 TraesCS2A01G188800 chr2A 97.706 218 5 0 3254 3471 158262123 158262340 3.270000e-100 375.0
3 TraesCS2A01G188800 chr2A 98.095 105 2 0 2771 2875 154833495 154833391 2.130000e-42 183.0
4 TraesCS2A01G188800 chr2A 100.000 54 0 0 2713 2766 154832905 154832958 2.200000e-17 100.0
5 TraesCS2A01G188800 chr2A 98.148 54 1 0 2713 2766 5521628 5521681 1.030000e-15 95.3
6 TraesCS2A01G188800 chr3D 96.118 2576 75 7 1 2556 184633696 184631126 0.000000e+00 4180.0
7 TraesCS2A01G188800 chr3D 95.728 2364 86 10 1 2360 30790796 30788444 0.000000e+00 3792.0
8 TraesCS2A01G188800 chr3D 95.322 171 7 1 3060 3229 590684081 590684251 1.590000e-68 270.0
9 TraesCS2A01G188800 chr3D 97.279 147 3 1 2569 2714 590683742 590683888 7.440000e-62 248.0
10 TraesCS2A01G188800 chr3D 94.667 150 7 1 2569 2717 578232201 578232052 7.490000e-57 231.0
11 TraesCS2A01G188800 chr3D 97.143 105 3 0 2771 2875 590684163 590684267 9.900000e-41 178.0
12 TraesCS2A01G188800 chr3D 86.806 144 13 5 2575 2714 590683848 590683989 4.640000e-34 156.0
13 TraesCS2A01G188800 chr3D 93.333 105 7 0 2771 2875 590684114 590684218 4.640000e-34 156.0
14 TraesCS2A01G188800 chr3D 88.722 133 6 4 2586 2717 184631032 184630908 1.670000e-33 154.0
15 TraesCS2A01G188800 chr3D 85.714 147 15 5 2575 2717 184630951 184630807 2.160000e-32 150.0
16 TraesCS2A01G188800 chr5B 94.203 2743 120 25 1 2714 544511613 544514345 0.000000e+00 4148.0
17 TraesCS2A01G188800 chr5B 90.722 194 17 1 3060 3253 544514457 544514649 1.240000e-64 257.0
18 TraesCS2A01G188800 chr5B 96.190 105 4 0 2771 2875 594884669 594884773 4.610000e-39 172.0
19 TraesCS2A01G188800 chr5B 95.238 105 5 0 2771 2875 594884620 594884724 2.140000e-37 167.0
20 TraesCS2A01G188800 chr5B 94.231 104 6 0 2772 2875 517885270 517885373 3.590000e-35 159.0
21 TraesCS2A01G188800 chr7B 93.100 2681 130 29 1 2659 504197397 504200044 0.000000e+00 3875.0
22 TraesCS2A01G188800 chr7B 90.863 197 16 2 3058 3253 197006633 197006438 2.660000e-66 263.0
23 TraesCS2A01G188800 chr7B 90.155 193 18 1 3061 3253 197006726 197006535 2.070000e-62 250.0
24 TraesCS2A01G188800 chr2D 94.930 2485 97 18 1 2468 360460889 360458417 0.000000e+00 3864.0
25 TraesCS2A01G188800 chr2D 95.431 2342 92 8 1 2338 2317532 2319862 0.000000e+00 3718.0
26 TraesCS2A01G188800 chr4D 95.228 2431 94 11 1 2416 7006528 7008951 0.000000e+00 3827.0
27 TraesCS2A01G188800 chr4D 92.350 183 11 2 3060 3242 201445361 201445182 1.240000e-64 257.0
28 TraesCS2A01G188800 chr4D 81.459 329 34 18 2569 2875 201445599 201445276 9.620000e-61 244.0
29 TraesCS2A01G188800 chr4D 92.381 105 7 1 2771 2875 481100803 481100700 7.760000e-32 148.0
30 TraesCS2A01G188800 chr4D 91.509 106 6 3 2771 2875 7010985 7011088 3.610000e-30 143.0
31 TraesCS2A01G188800 chr4D 90.385 104 9 1 2771 2874 201445282 201445180 6.040000e-28 135.0
32 TraesCS2A01G188800 chr4D 82.569 109 13 5 2575 2679 201445493 201445387 1.330000e-14 91.6
33 TraesCS2A01G188800 chr1D 95.689 2343 89 8 1 2338 348022279 348024614 0.000000e+00 3757.0
34 TraesCS2A01G188800 chr1D 93.871 310 16 3 2248 2556 348024599 348024906 6.790000e-127 464.0
35 TraesCS2A01G188800 chr1D 82.979 329 32 17 2569 2875 348024995 348025321 3.410000e-70 276.0
36 TraesCS2A01G188800 chr1D 98.148 54 1 0 2713 2766 30806539 30806592 1.030000e-15 95.3
37 TraesCS2A01G188800 chr1D 98.148 54 1 0 2713 2766 30911857 30911910 1.030000e-15 95.3
38 TraesCS2A01G188800 chr4B 95.443 2348 91 11 1 2338 147355538 147357879 0.000000e+00 3729.0
39 TraesCS2A01G188800 chr4B 92.233 309 19 5 2249 2556 147357901 147358205 1.910000e-117 433.0
40 TraesCS2A01G188800 chr4B 95.918 147 5 1 2569 2714 125395344 125395490 1.610000e-58 237.0
41 TraesCS2A01G188800 chr4B 92.381 105 8 0 2771 2875 147358881 147358985 2.160000e-32 150.0
42 TraesCS2A01G188800 chr4B 91.429 105 8 1 2771 2875 2602406 2602303 3.610000e-30 143.0
43 TraesCS2A01G188800 chr4B 85.417 144 14 6 2575 2714 125395450 125395590 3.610000e-30 143.0
44 TraesCS2A01G188800 chr4B 91.429 105 8 1 2771 2875 139745169 139745066 3.610000e-30 143.0
45 TraesCS2A01G188800 chr4B 83.916 143 19 3 2575 2714 147358405 147358546 2.170000e-27 134.0
46 TraesCS2A01G188800 chr4B 97.436 39 1 0 2676 2714 147358704 147358742 2.240000e-07 67.6
47 TraesCS2A01G188800 chr1A 91.006 656 25 11 2084 2714 58476780 58477426 0.000000e+00 854.0
48 TraesCS2A01G188800 chr1A 98.598 214 3 0 3254 3467 335314996 335314783 2.530000e-101 379.0
49 TraesCS2A01G188800 chr1A 97.285 221 6 0 3251 3471 349119043 349119263 3.270000e-100 375.0
50 TraesCS2A01G188800 chr1A 97.706 218 5 0 3254 3471 363473754 363473971 3.270000e-100 375.0
51 TraesCS2A01G188800 chr1A 97.260 219 6 0 3253 3471 449958333 449958551 4.230000e-99 372.0
52 TraesCS2A01G188800 chr1A 92.784 194 13 1 3060 3253 58477625 58477817 2.640000e-71 279.0
53 TraesCS2A01G188800 chr1A 87.662 154 10 5 2569 2714 381283704 381283856 1.660000e-38 171.0
54 TraesCS2A01G188800 chr1A 95.238 105 5 0 2771 2875 58477658 58477762 2.140000e-37 167.0
55 TraesCS2A01G188800 chr1A 93.333 105 7 0 2771 2875 381283995 381284099 4.640000e-34 156.0
56 TraesCS2A01G188800 chr4A 93.023 473 10 8 2248 2717 616588494 616588042 0.000000e+00 669.0
57 TraesCS2A01G188800 chr4A 90.206 194 18 1 3060 3252 692943736 692943929 5.750000e-63 252.0
58 TraesCS2A01G188800 chr4A 95.333 150 6 1 2569 2717 641921429 641921280 1.610000e-58 237.0
59 TraesCS2A01G188800 chr4A 97.115 104 3 0 2771 2874 616586609 616586506 3.560000e-40 176.0
60 TraesCS2A01G188800 chr4A 93.333 105 6 1 2771 2875 616587849 616587746 1.670000e-33 154.0
61 TraesCS2A01G188800 chr4A 94.444 54 3 0 2713 2766 616585959 616586012 2.220000e-12 84.2
62 TraesCS2A01G188800 chr7A 94.045 403 7 2 2312 2714 89621621 89622006 2.310000e-166 595.0
63 TraesCS2A01G188800 chr7A 90.355 197 18 1 3058 3253 89623924 89624120 1.240000e-64 257.0
64 TraesCS2A01G188800 chr7A 93.333 105 7 0 2771 2875 89131131 89131027 4.640000e-34 156.0
65 TraesCS2A01G188800 chr7A 94.737 57 3 0 2713 2769 89624606 89624550 4.770000e-14 89.8
66 TraesCS2A01G188800 chr5A 94.558 294 8 6 2267 2556 681949807 681949518 6.830000e-122 448.0
67 TraesCS2A01G188800 chr5A 92.381 105 8 0 2771 2875 561194669 561194773 2.160000e-32 150.0
68 TraesCS2A01G188800 chr2B 91.054 313 21 5 2249 2556 679637947 679637637 1.930000e-112 416.0
69 TraesCS2A01G188800 chr3A 97.297 222 6 0 3250 3471 624892747 624892968 9.090000e-101 377.0
70 TraesCS2A01G188800 chr3A 97.706 218 5 0 3254 3471 56148647 56148864 3.270000e-100 375.0
71 TraesCS2A01G188800 chr3A 97.706 218 5 0 3254 3471 76192110 76191893 3.270000e-100 375.0
72 TraesCS2A01G188800 chr3A 97.706 218 5 0 3254 3471 468287926 468287709 3.270000e-100 375.0
73 TraesCS2A01G188800 chr3A 96.491 57 2 0 2713 2769 676838629 676838573 1.030000e-15 95.3
74 TraesCS2A01G188800 chr7D 93.514 185 7 1 3058 3242 53446500 53446321 1.590000e-68 270.0
75 TraesCS2A01G188800 chr3B 93.590 156 8 2 2561 2714 685982618 685982773 7.490000e-57 231.0
76 TraesCS2A01G188800 chrUn 88.312 154 9 5 2569 2714 238605593 238605745 3.560000e-40 176.0
77 TraesCS2A01G188800 chrUn 91.429 105 8 1 2771 2875 352841858 352841755 3.610000e-30 143.0
78 TraesCS2A01G188800 chrUn 91.429 105 8 1 2771 2875 352841955 352841852 3.610000e-30 143.0
79 TraesCS2A01G188800 chrUn 91.429 105 8 1 2771 2875 406746485 406746382 3.610000e-30 143.0
80 TraesCS2A01G188800 chrUn 90.476 105 9 1 2771 2875 238605884 238605987 1.680000e-28 137.0
81 TraesCS2A01G188800 chrUn 90.385 104 9 1 2772 2875 352841808 352841706 6.040000e-28 135.0
82 TraesCS2A01G188800 chrUn 90.385 104 9 1 2772 2875 352841905 352841803 6.040000e-28 135.0
83 TraesCS2A01G188800 chrUn 90.385 104 9 1 2772 2875 406746435 406746333 6.040000e-28 135.0
84 TraesCS2A01G188800 chrUn 89.524 105 10 1 2771 2875 238605933 238606036 7.820000e-27 132.0
85 TraesCS2A01G188800 chrUn 96.000 75 3 0 2771 2845 352841761 352841687 4.700000e-24 122.0
86 TraesCS2A01G188800 chrUn 96.000 75 3 0 2771 2845 406746388 406746314 4.700000e-24 122.0
87 TraesCS2A01G188800 chrUn 76.991 226 15 22 2451 2659 352842243 352842038 1.030000e-15 95.3
88 TraesCS2A01G188800 chr6A 87.662 154 10 5 2569 2714 105154881 105155033 1.660000e-38 171.0
89 TraesCS2A01G188800 chr6A 93.578 109 6 1 2768 2875 105155167 105155275 9.970000e-36 161.0
90 TraesCS2A01G188800 chr1B 92.233 103 8 0 2773 2875 573880518 573880416 2.790000e-31 147.0
91 TraesCS2A01G188800 chr5D 91.429 105 8 1 2771 2875 473109959 473110062 3.610000e-30 143.0
92 TraesCS2A01G188800 chr6D 100.000 41 0 0 2630 2670 333925908 333925948 3.710000e-10 76.8
93 TraesCS2A01G188800 chr6D 100.000 38 0 0 2633 2670 115463906 115463869 1.730000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G188800 chr2A 154842120 154845590 3470 True 3037.500000 5310 100.000000 1 3471 2 chr2A.!!$R2 3470
1 TraesCS2A01G188800 chr3D 30788444 30790796 2352 True 3792.000000 3792 95.728000 1 2360 1 chr3D.!!$R1 2359
2 TraesCS2A01G188800 chr3D 184630807 184633696 2889 True 1494.666667 4180 90.184667 1 2717 3 chr3D.!!$R3 2716
3 TraesCS2A01G188800 chr3D 590683742 590684267 525 False 201.600000 270 93.976600 2569 3229 5 chr3D.!!$F1 660
4 TraesCS2A01G188800 chr5B 544511613 544514649 3036 False 2202.500000 4148 92.462500 1 3253 2 chr5B.!!$F2 3252
5 TraesCS2A01G188800 chr7B 504197397 504200044 2647 False 3875.000000 3875 93.100000 1 2659 1 chr7B.!!$F1 2658
6 TraesCS2A01G188800 chr2D 360458417 360460889 2472 True 3864.000000 3864 94.930000 1 2468 1 chr2D.!!$R1 2467
7 TraesCS2A01G188800 chr2D 2317532 2319862 2330 False 3718.000000 3718 95.431000 1 2338 1 chr2D.!!$F1 2337
8 TraesCS2A01G188800 chr4D 7006528 7011088 4560 False 1985.000000 3827 93.368500 1 2875 2 chr4D.!!$F1 2874
9 TraesCS2A01G188800 chr1D 348022279 348025321 3042 False 1499.000000 3757 90.846333 1 2875 3 chr1D.!!$F3 2874
10 TraesCS2A01G188800 chr4B 147355538 147358985 3447 False 902.720000 3729 92.281800 1 2875 5 chr4B.!!$F2 2874
11 TraesCS2A01G188800 chr1A 58476780 58477817 1037 False 433.333333 854 93.009333 2084 3253 3 chr1A.!!$F4 1169
12 TraesCS2A01G188800 chr4A 616586506 616588494 1988 True 333.000000 669 94.490333 2248 2875 3 chr4A.!!$R2 627
13 TraesCS2A01G188800 chr7A 89621621 89624120 2499 False 426.000000 595 92.200000 2312 3253 2 chr7A.!!$F1 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 707 0.121197 AGGGGTTGATCTCAAGGGGA 59.879 55.0 0.0 0.0 36.39 4.81 F
2193 2202 0.247736 GGTGCTGCTGCTACTACACT 59.752 55.0 17.0 0.0 40.48 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 2225 1.285373 TGGTGTTGTTGTAGGGGTTGT 59.715 47.619 0.00 0.00 0.00 3.32 R
3393 7378 0.028637 GGATCGGGAAGACGTACGAC 59.971 60.000 24.41 16.77 38.24 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.121786 GCCATTGTCATTTATGCTGCG 58.878 47.619 0.00 0.00 0.00 5.18
74 75 1.492599 AGAGGCCTCCTAGAAAATGGC 59.507 52.381 29.54 0.00 42.56 4.40
181 182 5.290493 TGAACTTACACATCACTCAAGGT 57.710 39.130 0.00 0.00 0.00 3.50
190 191 5.760253 ACACATCACTCAAGGTAGAAACTTG 59.240 40.000 0.00 0.00 45.08 3.16
281 282 4.263550 TGGTGGCAGCAGTTATAAAAGGTA 60.264 41.667 16.56 0.00 0.00 3.08
338 340 3.527533 CGCACTTGCCCTATTAGTACAA 58.472 45.455 0.00 0.00 37.91 2.41
411 413 6.997655 TGTTCAGATCTGATCTAACAACTGT 58.002 36.000 25.64 3.53 39.64 3.55
614 616 6.720288 AGTAGTCACTACTGTAACTCCAACAT 59.280 38.462 17.14 0.00 44.47 2.71
620 622 4.008074 ACTGTAACTCCAACATCCACTG 57.992 45.455 0.00 0.00 0.00 3.66
621 623 3.646162 ACTGTAACTCCAACATCCACTGA 59.354 43.478 0.00 0.00 0.00 3.41
693 695 1.867595 ATGGAGCAAGGGAGGGGTTG 61.868 60.000 0.00 0.00 0.00 3.77
694 696 2.231380 GGAGCAAGGGAGGGGTTGA 61.231 63.158 0.00 0.00 0.00 3.18
705 707 0.121197 AGGGGTTGATCTCAAGGGGA 59.879 55.000 0.00 0.00 36.39 4.81
760 763 9.638239 CCTTGTGCATTAGTTACATATTGTTTT 57.362 29.630 0.00 0.00 0.00 2.43
854 857 8.100791 TCATTAAGTTAACTACTGGTGCTCAAT 58.899 33.333 8.92 0.00 37.12 2.57
986 989 1.039856 CTGCCTAGGAGGAGAAGAGC 58.960 60.000 14.75 0.00 37.67 4.09
1002 1005 0.798776 GAGCGACAGTTTGGTCCATG 59.201 55.000 0.00 0.00 34.24 3.66
1013 1017 6.719370 ACAGTTTGGTCCATGTACAATATGTT 59.281 34.615 0.00 0.00 0.00 2.71
1016 1020 6.935741 TTGGTCCATGTACAATATGTTAGC 57.064 37.500 0.00 0.00 0.00 3.09
1037 1041 5.316987 AGCTAGACAAAAGGTATGTGCTTT 58.683 37.500 0.00 0.00 31.19 3.51
1038 1042 5.770162 AGCTAGACAAAAGGTATGTGCTTTT 59.230 36.000 0.00 0.00 31.19 2.27
1055 1059 8.177119 TGTGCTTTTATCTTATGTCCTTGTTT 57.823 30.769 0.00 0.00 0.00 2.83
1370 1374 4.804868 AGGCATGCATTTGACATAAACA 57.195 36.364 21.36 0.00 0.00 2.83
1489 1493 8.099537 GGAATAAAGGATAAGCAGATGATGAGA 58.900 37.037 0.00 0.00 0.00 3.27
1685 1689 1.408702 ACACATGTGGGTGCAGAAAAC 59.591 47.619 28.64 0.00 42.55 2.43
1695 1699 0.534203 TGCAGAAAACGGGACCTCAC 60.534 55.000 0.00 0.00 0.00 3.51
1762 1766 7.093945 GGCAAAAGAAAACCAGAGGATTATGTA 60.094 37.037 0.00 0.00 0.00 2.29
1782 1786 5.821204 TGTAAGCAAGTTCTTCAAGAAAGC 58.179 37.500 0.00 6.88 35.75 3.51
1870 1874 4.617875 GGTCCAGACATTGACCCG 57.382 61.111 0.00 0.00 44.32 5.28
1893 1897 4.673841 GCCTGCATTTAAAGTGAAGAGAGC 60.674 45.833 7.02 0.00 0.00 4.09
2065 2069 3.631686 TGAGGAAGAACAAACATGTGGTG 59.368 43.478 0.00 3.43 0.00 4.17
2193 2202 0.247736 GGTGCTGCTGCTACTACACT 59.752 55.000 17.00 0.00 40.48 3.55
2213 2225 5.047021 ACACTAGCAGCAAGAACTTCTCATA 60.047 40.000 0.00 0.00 0.00 2.15
2218 2230 4.378874 GCAGCAAGAACTTCTCATACAACC 60.379 45.833 0.00 0.00 0.00 3.77
2387 2610 2.856864 TCTGGTCCCTCCACATCTACTA 59.143 50.000 0.00 0.00 41.93 1.82
2499 2722 1.948834 TGTGTGTGTTCTTGCATCCTG 59.051 47.619 0.00 0.00 0.00 3.86
2556 2846 9.918630 ACTTTAAGAATCAATGCCATATTATGC 57.081 29.630 0.00 0.00 0.00 3.14
2568 2858 9.532494 AATGCCATATTATGCTGGAGTTATTAA 57.468 29.630 0.00 0.00 34.24 1.40
2731 3065 8.814931 AGTTATTGAGATAGAGATGGATCTTGG 58.185 37.037 0.00 0.00 37.25 3.61
2733 3067 6.914654 TTGAGATAGAGATGGATCTTGGAG 57.085 41.667 0.00 0.00 37.25 3.86
2734 3068 6.211505 TGAGATAGAGATGGATCTTGGAGA 57.788 41.667 0.00 0.00 37.25 3.71
2738 3072 3.575805 AGAGATGGATCTTGGAGAGGTC 58.424 50.000 0.00 0.00 37.25 3.85
2747 3199 2.897326 TCTTGGAGAGGTCGTTGATGAA 59.103 45.455 0.00 0.00 0.00 2.57
2748 3200 3.056536 TCTTGGAGAGGTCGTTGATGAAG 60.057 47.826 0.00 0.00 0.00 3.02
2750 3202 2.897326 TGGAGAGGTCGTTGATGAAGAA 59.103 45.455 0.00 0.00 0.00 2.52
2751 3203 3.056536 TGGAGAGGTCGTTGATGAAGAAG 60.057 47.826 0.00 0.00 0.00 2.85
2752 3204 3.193691 GGAGAGGTCGTTGATGAAGAAGA 59.806 47.826 0.00 0.00 0.00 2.87
2754 3206 4.561105 AGAGGTCGTTGATGAAGAAGAAC 58.439 43.478 0.00 0.00 0.00 3.01
2756 3208 4.310769 AGGTCGTTGATGAAGAAGAACAG 58.689 43.478 0.00 0.00 0.00 3.16
2757 3209 3.433615 GGTCGTTGATGAAGAAGAACAGG 59.566 47.826 0.00 0.00 0.00 4.00
2758 3210 4.058817 GTCGTTGATGAAGAAGAACAGGT 58.941 43.478 0.00 0.00 0.00 4.00
2760 3212 3.364366 CGTTGATGAAGAAGAACAGGTGC 60.364 47.826 0.00 0.00 0.00 5.01
2761 3213 2.783135 TGATGAAGAAGAACAGGTGCC 58.217 47.619 0.00 0.00 0.00 5.01
2762 3214 2.106338 TGATGAAGAAGAACAGGTGCCA 59.894 45.455 0.00 0.00 0.00 4.92
2763 3215 2.727123 TGAAGAAGAACAGGTGCCAA 57.273 45.000 0.00 0.00 0.00 4.52
2764 3216 2.575532 TGAAGAAGAACAGGTGCCAAG 58.424 47.619 0.00 0.00 0.00 3.61
2773 3227 1.133976 ACAGGTGCCAAGGATATGCTC 60.134 52.381 0.00 0.00 0.00 4.26
2775 3229 0.886490 GGTGCCAAGGATATGCTCGG 60.886 60.000 0.00 0.00 0.00 4.63
2776 3230 0.886490 GTGCCAAGGATATGCTCGGG 60.886 60.000 3.11 6.91 0.00 5.14
2779 3233 0.035458 CCAAGGATATGCTCGGGGTC 59.965 60.000 0.00 0.00 0.00 4.46
2780 3234 0.319900 CAAGGATATGCTCGGGGTCG 60.320 60.000 0.00 0.00 37.82 4.79
2781 3235 0.469331 AAGGATATGCTCGGGGTCGA 60.469 55.000 0.00 0.00 43.86 4.20
2782 3236 1.179814 AGGATATGCTCGGGGTCGAC 61.180 60.000 7.13 7.13 40.88 4.20
2783 3237 1.081376 GATATGCTCGGGGTCGACG 60.081 63.158 9.92 0.00 40.88 5.12
2784 3238 2.473664 GATATGCTCGGGGTCGACGG 62.474 65.000 9.92 1.31 40.88 4.79
2785 3239 2.971095 ATATGCTCGGGGTCGACGGA 62.971 60.000 9.92 5.97 40.88 4.69
2787 3241 4.790861 GCTCGGGGTCGACGGAAC 62.791 72.222 9.92 0.00 40.88 3.62
2793 3247 3.685435 GGTCGACGGAACCACCTA 58.315 61.111 9.92 0.00 36.31 3.08
2794 3248 1.966762 GGTCGACGGAACCACCTAA 59.033 57.895 9.92 0.00 36.31 2.69
2796 3250 1.670967 GGTCGACGGAACCACCTAAAG 60.671 57.143 9.92 0.00 36.31 1.85
2797 3251 0.037975 TCGACGGAACCACCTAAAGC 60.038 55.000 0.00 0.00 36.31 3.51
2798 3252 1.017701 CGACGGAACCACCTAAAGCC 61.018 60.000 0.00 0.00 36.31 4.35
2799 3253 0.035739 GACGGAACCACCTAAAGCCA 59.964 55.000 0.00 0.00 36.31 4.75
2801 3255 1.339727 ACGGAACCACCTAAAGCCATC 60.340 52.381 0.00 0.00 36.31 3.51
2802 3256 1.339631 CGGAACCACCTAAAGCCATCA 60.340 52.381 0.00 0.00 36.31 3.07
2807 3261 4.696479 ACCACCTAAAGCCATCATCTAG 57.304 45.455 0.00 0.00 0.00 2.43
2809 3263 3.244700 CCACCTAAAGCCATCATCTAGGG 60.245 52.174 0.00 0.00 34.58 3.53
2812 3266 3.906846 CCTAAAGCCATCATCTAGGGTCT 59.093 47.826 0.00 0.00 33.84 3.85
2814 3268 5.186797 CCTAAAGCCATCATCTAGGGTCTAG 59.813 48.000 0.00 0.00 33.84 2.43
2826 3590 2.043248 GTCTAGGGTGGCTCGGGA 60.043 66.667 0.00 0.00 0.00 5.14
2852 3616 2.802719 GGAACCACCTAAAGCCATCAA 58.197 47.619 0.00 0.00 35.41 2.57
2853 3617 2.755103 GGAACCACCTAAAGCCATCAAG 59.245 50.000 0.00 0.00 35.41 3.02
2854 3618 3.421844 GAACCACCTAAAGCCATCAAGT 58.578 45.455 0.00 0.00 0.00 3.16
2855 3619 3.525800 ACCACCTAAAGCCATCAAGTT 57.474 42.857 0.00 0.00 0.00 2.66
2856 3620 3.844640 ACCACCTAAAGCCATCAAGTTT 58.155 40.909 0.00 0.00 0.00 2.66
2857 3621 3.573967 ACCACCTAAAGCCATCAAGTTTG 59.426 43.478 0.00 0.00 0.00 2.93
2858 3622 3.056607 CCACCTAAAGCCATCAAGTTTGG 60.057 47.826 0.00 0.00 37.31 3.28
2859 3623 3.573967 CACCTAAAGCCATCAAGTTTGGT 59.426 43.478 0.00 0.00 36.57 3.67
2860 3624 3.826729 ACCTAAAGCCATCAAGTTTGGTC 59.173 43.478 0.00 0.00 36.57 4.02
2861 3625 4.082125 CCTAAAGCCATCAAGTTTGGTCT 58.918 43.478 0.00 0.00 36.57 3.85
2862 3626 5.222048 ACCTAAAGCCATCAAGTTTGGTCTA 60.222 40.000 0.00 0.00 36.57 2.59
2863 3627 5.355350 CCTAAAGCCATCAAGTTTGGTCTAG 59.645 44.000 0.00 0.00 36.57 2.43
2864 3628 3.356529 AGCCATCAAGTTTGGTCTAGG 57.643 47.619 0.00 0.00 36.57 3.02
2865 3629 2.025887 AGCCATCAAGTTTGGTCTAGGG 60.026 50.000 0.00 0.00 36.57 3.53
2866 3630 2.290960 GCCATCAAGTTTGGTCTAGGGT 60.291 50.000 0.00 0.00 36.57 4.34
2867 3631 3.347216 CCATCAAGTTTGGTCTAGGGTG 58.653 50.000 0.00 0.00 0.00 4.61
2868 3632 3.347216 CATCAAGTTTGGTCTAGGGTGG 58.653 50.000 0.00 0.00 0.00 4.61
2869 3633 1.073284 TCAAGTTTGGTCTAGGGTGGC 59.927 52.381 0.00 0.00 0.00 5.01
2870 3634 1.073923 CAAGTTTGGTCTAGGGTGGCT 59.926 52.381 0.00 0.00 0.00 4.75
2871 3635 0.984995 AGTTTGGTCTAGGGTGGCTC 59.015 55.000 0.00 0.00 0.00 4.70
2872 3636 0.391263 GTTTGGTCTAGGGTGGCTCG 60.391 60.000 0.00 0.00 0.00 5.03
2873 3637 1.550130 TTTGGTCTAGGGTGGCTCGG 61.550 60.000 0.00 0.00 0.00 4.63
2874 3638 3.155167 GGTCTAGGGTGGCTCGGG 61.155 72.222 0.00 0.00 0.00 5.14
3076 3840 2.507407 GGAACCACCTAAAGCCATCA 57.493 50.000 0.00 0.00 35.41 3.07
3099 3912 2.114411 GGTTTTGGTGGCTCGGGA 59.886 61.111 0.00 0.00 0.00 5.14
3106 3919 3.515286 GTGGCTCGGGATCGACGA 61.515 66.667 0.00 0.00 40.88 4.20
3118 3931 3.528532 GGATCGACGAAACCACCTAAAT 58.471 45.455 16.10 0.00 0.00 1.40
3119 3932 3.554731 GGATCGACGAAACCACCTAAATC 59.445 47.826 16.10 0.02 0.00 2.17
3238 7223 3.495806 GCCATCATTTTGGGTTTTGGTGA 60.496 43.478 0.00 0.00 37.24 4.02
3243 7228 4.467795 TCATTTTGGGTTTTGGTGACTCAA 59.532 37.500 0.00 0.00 35.78 3.02
3245 7230 3.374042 TTGGGTTTTGGTGACTCAAGA 57.626 42.857 0.00 0.00 32.79 3.02
3253 7238 0.526662 GGTGACTCAAGATCGACGGT 59.473 55.000 0.00 0.00 0.00 4.83
3254 7239 1.618861 GTGACTCAAGATCGACGGTG 58.381 55.000 0.00 0.00 0.00 4.94
3255 7240 1.068472 GTGACTCAAGATCGACGGTGT 60.068 52.381 0.00 0.00 0.00 4.16
3256 7241 1.611977 TGACTCAAGATCGACGGTGTT 59.388 47.619 0.00 0.00 0.00 3.32
3257 7242 1.986378 GACTCAAGATCGACGGTGTTG 59.014 52.381 11.52 11.52 0.00 3.33
3258 7243 1.336887 ACTCAAGATCGACGGTGTTGG 60.337 52.381 16.90 10.58 0.00 3.77
3259 7244 0.037697 TCAAGATCGACGGTGTTGGG 60.038 55.000 16.90 0.00 0.00 4.12
3260 7245 1.019278 CAAGATCGACGGTGTTGGGG 61.019 60.000 10.00 0.00 0.00 4.96
3261 7246 1.189524 AAGATCGACGGTGTTGGGGA 61.190 55.000 0.00 0.00 0.00 4.81
3262 7247 1.189524 AGATCGACGGTGTTGGGGAA 61.190 55.000 0.00 0.00 0.00 3.97
3263 7248 1.004200 ATCGACGGTGTTGGGGAAC 60.004 57.895 0.00 0.00 0.00 3.62
3264 7249 2.775032 ATCGACGGTGTTGGGGAACG 62.775 60.000 0.00 0.00 0.00 3.95
3265 7250 2.109593 GACGGTGTTGGGGAACGT 59.890 61.111 0.00 0.00 40.85 3.99
3266 7251 1.367102 GACGGTGTTGGGGAACGTA 59.633 57.895 0.00 0.00 37.96 3.57
3267 7252 0.668401 GACGGTGTTGGGGAACGTAG 60.668 60.000 0.00 0.00 37.96 3.51
3269 7254 0.602562 CGGTGTTGGGGAACGTAGTA 59.397 55.000 0.00 0.00 45.00 1.82
3270 7255 1.000731 CGGTGTTGGGGAACGTAGTAA 59.999 52.381 0.00 0.00 45.00 2.24
3271 7256 2.354003 CGGTGTTGGGGAACGTAGTAAT 60.354 50.000 0.00 0.00 45.00 1.89
3272 7257 3.678289 GGTGTTGGGGAACGTAGTAATT 58.322 45.455 0.00 0.00 45.00 1.40
3273 7258 4.074259 GGTGTTGGGGAACGTAGTAATTT 58.926 43.478 0.00 0.00 45.00 1.82
3274 7259 4.154737 GGTGTTGGGGAACGTAGTAATTTC 59.845 45.833 0.00 0.00 45.00 2.17
3275 7260 4.756135 GTGTTGGGGAACGTAGTAATTTCA 59.244 41.667 0.00 0.00 45.00 2.69
3276 7261 5.239087 GTGTTGGGGAACGTAGTAATTTCAA 59.761 40.000 0.00 0.00 45.00 2.69
3277 7262 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
3278 7263 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
3279 7264 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
3307 7292 1.640428 CGCACACGTAAGATCATGGT 58.360 50.000 0.00 0.00 43.62 3.55
3308 7293 1.324435 CGCACACGTAAGATCATGGTG 59.676 52.381 0.00 0.06 43.62 4.17
3309 7294 2.616960 GCACACGTAAGATCATGGTGA 58.383 47.619 11.53 0.00 43.62 4.02
3310 7295 3.198068 GCACACGTAAGATCATGGTGAT 58.802 45.455 11.53 0.00 40.34 3.06
3311 7296 3.001634 GCACACGTAAGATCATGGTGATG 59.998 47.826 11.53 8.02 37.20 3.07
3312 7297 3.001634 CACACGTAAGATCATGGTGATGC 59.998 47.826 11.53 0.00 37.20 3.91
3313 7298 3.197265 CACGTAAGATCATGGTGATGCA 58.803 45.455 0.00 0.00 37.20 3.96
3314 7299 3.811497 CACGTAAGATCATGGTGATGCAT 59.189 43.478 0.00 0.00 37.20 3.96
3315 7300 4.990426 CACGTAAGATCATGGTGATGCATA 59.010 41.667 0.00 0.00 37.20 3.14
3316 7301 5.119743 CACGTAAGATCATGGTGATGCATAG 59.880 44.000 0.00 0.00 37.20 2.23
3317 7302 4.092529 CGTAAGATCATGGTGATGCATAGC 59.907 45.833 0.00 0.00 37.20 2.97
3318 7303 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
3319 7304 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
3320 7305 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
3321 7306 3.002038 TCATGGTGATGCATAGCAACA 57.998 42.857 8.42 8.42 45.07 3.33
3322 7307 3.354467 TCATGGTGATGCATAGCAACAA 58.646 40.909 9.90 0.00 44.04 2.83
3323 7308 3.379057 TCATGGTGATGCATAGCAACAAG 59.621 43.478 9.90 6.31 44.04 3.16
3324 7309 3.070476 TGGTGATGCATAGCAACAAGA 57.930 42.857 0.00 0.00 42.49 3.02
3325 7310 3.011818 TGGTGATGCATAGCAACAAGAG 58.988 45.455 0.00 0.00 42.49 2.85
3326 7311 2.357009 GGTGATGCATAGCAACAAGAGG 59.643 50.000 0.00 0.00 42.49 3.69
3327 7312 2.357009 GTGATGCATAGCAACAAGAGGG 59.643 50.000 0.00 0.00 42.49 4.30
3328 7313 1.952296 GATGCATAGCAACAAGAGGGG 59.048 52.381 0.00 0.00 43.62 4.79
3329 7314 0.991146 TGCATAGCAACAAGAGGGGA 59.009 50.000 0.00 0.00 34.76 4.81
3330 7315 1.065199 TGCATAGCAACAAGAGGGGAG 60.065 52.381 0.00 0.00 34.76 4.30
3331 7316 1.210478 GCATAGCAACAAGAGGGGAGA 59.790 52.381 0.00 0.00 0.00 3.71
3332 7317 2.744494 GCATAGCAACAAGAGGGGAGAG 60.744 54.545 0.00 0.00 0.00 3.20
3333 7318 2.327325 TAGCAACAAGAGGGGAGAGT 57.673 50.000 0.00 0.00 0.00 3.24
3334 7319 0.689623 AGCAACAAGAGGGGAGAGTG 59.310 55.000 0.00 0.00 0.00 3.51
3335 7320 0.398318 GCAACAAGAGGGGAGAGTGT 59.602 55.000 0.00 0.00 0.00 3.55
3336 7321 1.202818 GCAACAAGAGGGGAGAGTGTT 60.203 52.381 0.00 0.00 32.78 3.32
3337 7322 2.498167 CAACAAGAGGGGAGAGTGTTG 58.502 52.381 0.00 0.00 42.02 3.33
3338 7323 1.807814 ACAAGAGGGGAGAGTGTTGT 58.192 50.000 0.00 0.00 0.00 3.32
3339 7324 1.694696 ACAAGAGGGGAGAGTGTTGTC 59.305 52.381 0.00 0.00 0.00 3.18
3340 7325 1.974236 CAAGAGGGGAGAGTGTTGTCT 59.026 52.381 0.00 0.00 0.00 3.41
3341 7326 3.165875 CAAGAGGGGAGAGTGTTGTCTA 58.834 50.000 0.00 0.00 0.00 2.59
3342 7327 2.810164 AGAGGGGAGAGTGTTGTCTAC 58.190 52.381 0.00 0.00 0.00 2.59
3343 7328 1.473278 GAGGGGAGAGTGTTGTCTACG 59.527 57.143 0.00 0.00 0.00 3.51
3344 7329 1.203025 AGGGGAGAGTGTTGTCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
3345 7330 2.040813 AGGGGAGAGTGTTGTCTACGTA 59.959 50.000 0.00 0.00 0.00 3.57
3346 7331 2.163211 GGGGAGAGTGTTGTCTACGTAC 59.837 54.545 0.00 0.00 0.00 3.67
3347 7332 2.163211 GGGAGAGTGTTGTCTACGTACC 59.837 54.545 0.00 0.00 0.00 3.34
3348 7333 2.163211 GGAGAGTGTTGTCTACGTACCC 59.837 54.545 0.00 0.00 0.00 3.69
3349 7334 3.080319 GAGAGTGTTGTCTACGTACCCT 58.920 50.000 0.00 0.00 0.00 4.34
3350 7335 3.080319 AGAGTGTTGTCTACGTACCCTC 58.920 50.000 0.00 0.00 0.00 4.30
3351 7336 1.808945 AGTGTTGTCTACGTACCCTCG 59.191 52.381 0.00 0.00 0.00 4.63
3352 7337 1.537202 GTGTTGTCTACGTACCCTCGT 59.463 52.381 0.00 0.00 45.97 4.18
3353 7338 1.536766 TGTTGTCTACGTACCCTCGTG 59.463 52.381 0.00 0.00 43.93 4.35
3354 7339 1.135575 GTTGTCTACGTACCCTCGTGG 60.136 57.143 0.00 0.00 43.93 4.94
3355 7340 0.324614 TGTCTACGTACCCTCGTGGA 59.675 55.000 4.76 1.62 45.77 4.02
3356 7341 3.159298 TCTACGTACCCTCGTGGAC 57.841 57.895 4.76 0.00 43.86 4.02
3357 7342 0.392998 TCTACGTACCCTCGTGGACC 60.393 60.000 4.76 0.00 43.86 4.46
3358 7343 1.709147 CTACGTACCCTCGTGGACCG 61.709 65.000 4.76 6.50 43.10 4.79
3359 7344 3.818787 CGTACCCTCGTGGACCGG 61.819 72.222 4.76 0.00 38.00 5.28
3360 7345 4.139234 GTACCCTCGTGGACCGGC 62.139 72.222 0.00 0.00 38.00 6.13
3361 7346 4.682334 TACCCTCGTGGACCGGCA 62.682 66.667 0.00 0.00 38.00 5.69
3388 7373 3.088194 GTGTTGACACAACGTAGAGGA 57.912 47.619 9.28 0.00 45.75 3.71
3389 7374 3.450578 GTGTTGACACAACGTAGAGGAA 58.549 45.455 9.28 0.00 45.75 3.36
3390 7375 3.489785 GTGTTGACACAACGTAGAGGAAG 59.510 47.826 9.28 0.00 45.75 3.46
3391 7376 3.131577 TGTTGACACAACGTAGAGGAAGT 59.868 43.478 9.49 0.00 0.00 3.01
3392 7377 4.338964 TGTTGACACAACGTAGAGGAAGTA 59.661 41.667 9.49 0.00 0.00 2.24
3393 7378 4.761235 TGACACAACGTAGAGGAAGTAG 57.239 45.455 0.00 0.00 0.00 2.57
3394 7379 4.139786 TGACACAACGTAGAGGAAGTAGT 58.860 43.478 0.00 0.00 0.00 2.73
3395 7380 4.214971 TGACACAACGTAGAGGAAGTAGTC 59.785 45.833 0.00 0.00 0.00 2.59
3396 7381 3.188048 ACACAACGTAGAGGAAGTAGTCG 59.812 47.826 0.00 0.00 0.00 4.18
3397 7382 3.188048 CACAACGTAGAGGAAGTAGTCGT 59.812 47.826 0.00 0.00 0.00 4.34
3398 7383 4.389992 CACAACGTAGAGGAAGTAGTCGTA 59.610 45.833 0.00 0.00 0.00 3.43
3399 7384 4.390297 ACAACGTAGAGGAAGTAGTCGTAC 59.610 45.833 0.00 0.00 0.00 3.67
3400 7385 3.182967 ACGTAGAGGAAGTAGTCGTACG 58.817 50.000 9.53 9.53 37.23 3.67
3401 7386 3.182967 CGTAGAGGAAGTAGTCGTACGT 58.817 50.000 16.05 0.00 33.97 3.57
3402 7387 3.241784 CGTAGAGGAAGTAGTCGTACGTC 59.758 52.174 16.05 10.06 37.04 4.34
3403 7388 3.608316 AGAGGAAGTAGTCGTACGTCT 57.392 47.619 18.54 18.54 37.67 4.18
3404 7389 3.936564 AGAGGAAGTAGTCGTACGTCTT 58.063 45.455 19.61 16.11 37.67 3.01
3405 7390 3.932089 AGAGGAAGTAGTCGTACGTCTTC 59.068 47.826 19.61 21.62 41.24 2.87
3406 7391 3.006247 AGGAAGTAGTCGTACGTCTTCC 58.994 50.000 31.02 31.02 44.62 3.46
3407 7392 2.096657 GGAAGTAGTCGTACGTCTTCCC 59.903 54.545 29.72 19.63 41.80 3.97
3408 7393 1.363744 AGTAGTCGTACGTCTTCCCG 58.636 55.000 19.61 0.00 33.97 5.14
3409 7394 1.066858 AGTAGTCGTACGTCTTCCCGA 60.067 52.381 19.61 0.00 33.97 5.14
3410 7395 1.936547 GTAGTCGTACGTCTTCCCGAT 59.063 52.381 19.61 0.00 0.00 4.18
3411 7396 1.012841 AGTCGTACGTCTTCCCGATC 58.987 55.000 16.05 0.00 0.00 3.69
3412 7397 0.028637 GTCGTACGTCTTCCCGATCC 59.971 60.000 16.05 0.00 0.00 3.36
3413 7398 1.010350 CGTACGTCTTCCCGATCCG 60.010 63.158 7.22 0.00 0.00 4.18
3414 7399 1.431488 CGTACGTCTTCCCGATCCGA 61.431 60.000 7.22 0.00 0.00 4.55
3415 7400 0.028637 GTACGTCTTCCCGATCCGAC 59.971 60.000 0.00 0.00 0.00 4.79
3416 7401 1.097547 TACGTCTTCCCGATCCGACC 61.098 60.000 0.00 0.00 0.00 4.79
3417 7402 2.412112 GTCTTCCCGATCCGACCG 59.588 66.667 0.00 0.00 0.00 4.79
3418 7403 2.117156 GTCTTCCCGATCCGACCGA 61.117 63.158 0.00 0.00 0.00 4.69
3419 7404 1.152819 TCTTCCCGATCCGACCGAT 60.153 57.895 0.00 0.00 0.00 4.18
3420 7405 1.170919 TCTTCCCGATCCGACCGATC 61.171 60.000 0.00 0.00 43.58 3.69
3421 7406 2.143594 CTTCCCGATCCGACCGATCC 62.144 65.000 0.00 0.00 44.07 3.36
3422 7407 2.910479 CCCGATCCGACCGATCCA 60.910 66.667 0.00 0.00 44.07 3.41
3423 7408 2.495409 CCCGATCCGACCGATCCAA 61.495 63.158 0.00 0.00 44.07 3.53
3424 7409 1.007271 CCGATCCGACCGATCCAAG 60.007 63.158 0.00 0.00 44.07 3.61
3425 7410 1.734137 CGATCCGACCGATCCAAGT 59.266 57.895 0.00 0.00 44.07 3.16
3426 7411 0.949397 CGATCCGACCGATCCAAGTA 59.051 55.000 0.00 0.00 44.07 2.24
3427 7412 1.334779 CGATCCGACCGATCCAAGTAC 60.335 57.143 0.00 0.00 44.07 2.73
3428 7413 1.000496 GATCCGACCGATCCAAGTACC 60.000 57.143 0.00 0.00 41.51 3.34
3429 7414 1.065273 CCGACCGATCCAAGTACCG 59.935 63.158 0.00 0.00 0.00 4.02
3430 7415 1.378882 CCGACCGATCCAAGTACCGA 61.379 60.000 0.00 0.00 0.00 4.69
3431 7416 0.452987 CGACCGATCCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
3432 7417 1.796617 CGACCGATCCAAGTACCGAAC 60.797 57.143 0.00 0.00 0.00 3.95
3433 7418 0.171903 ACCGATCCAAGTACCGAACG 59.828 55.000 0.00 0.00 0.00 3.95
3434 7419 0.171903 CCGATCCAAGTACCGAACGT 59.828 55.000 0.00 0.00 0.00 3.99
3435 7420 1.401552 CCGATCCAAGTACCGAACGTA 59.598 52.381 0.00 0.00 0.00 3.57
3436 7421 2.444351 CGATCCAAGTACCGAACGTAC 58.556 52.381 0.00 0.00 46.69 3.67
3444 7429 2.505557 CCGAACGTACGGCACCTC 60.506 66.667 21.06 6.84 46.20 3.85
3445 7430 2.505557 CGAACGTACGGCACCTCC 60.506 66.667 21.06 0.00 0.00 4.30
3454 7439 2.435059 GGCACCTCCGAGTTCTGC 60.435 66.667 0.00 0.00 0.00 4.26
3455 7440 2.343758 GCACCTCCGAGTTCTGCA 59.656 61.111 0.00 0.00 0.00 4.41
3456 7441 2.029844 GCACCTCCGAGTTCTGCAC 61.030 63.158 0.00 0.00 0.00 4.57
3457 7442 1.367471 CACCTCCGAGTTCTGCACA 59.633 57.895 0.00 0.00 0.00 4.57
3458 7443 0.946221 CACCTCCGAGTTCTGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
3459 7444 1.734477 CCTCCGAGTTCTGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
3460 7445 1.007271 CTCCGAGTTCTGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
3461 7446 0.597637 CTCCGAGTTCTGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
3462 7447 0.596600 TCCGAGTTCTGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
3463 7448 0.874175 CCGAGTTCTGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
3464 7449 0.927537 CGAGTTCTGCACACGTTCAA 59.072 50.000 0.00 0.00 35.01 2.69
3465 7450 1.332028 CGAGTTCTGCACACGTTCAAC 60.332 52.381 0.00 0.00 35.01 3.18
3466 7451 1.933853 GAGTTCTGCACACGTTCAACT 59.066 47.619 0.00 0.00 0.00 3.16
3467 7452 2.351726 GAGTTCTGCACACGTTCAACTT 59.648 45.455 0.00 0.00 0.00 2.66
3468 7453 2.095853 AGTTCTGCACACGTTCAACTTG 59.904 45.455 0.00 0.00 0.00 3.16
3469 7454 1.013596 TCTGCACACGTTCAACTTGG 58.986 50.000 0.00 0.00 0.00 3.61
3470 7455 0.732571 CTGCACACGTTCAACTTGGT 59.267 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.149196 TCTTCCTTTTCTTTCGCAGCAT 58.851 40.909 0.00 0.00 0.00 3.79
27 28 2.230025 GCCCTGCTCTTCCTTTTCTTTC 59.770 50.000 0.00 0.00 0.00 2.62
74 75 3.367703 GGTGCCTCCATTTTCTCATTGTG 60.368 47.826 0.00 0.00 35.97 3.33
318 319 5.064834 GTCTTTGTACTAATAGGGCAAGTGC 59.935 44.000 0.00 0.00 41.14 4.40
338 340 2.092103 TGGCACTTACCCTTGTTGTCTT 60.092 45.455 0.00 0.00 0.00 3.01
411 413 5.124936 CAGGCATCAATCAAAGTCTGAATGA 59.875 40.000 0.00 0.00 45.81 2.57
693 695 0.467804 GGTCTGCTCCCCTTGAGATC 59.532 60.000 0.00 0.00 44.42 2.75
694 696 0.252881 TGGTCTGCTCCCCTTGAGAT 60.253 55.000 0.00 0.00 44.42 2.75
854 857 1.974957 TCTACCAGTGGCAGCAAGTAA 59.025 47.619 9.78 0.00 0.00 2.24
886 889 7.144234 ACCAAATGCTAGTGGGTATATGTTA 57.856 36.000 2.48 0.00 39.39 2.41
889 892 7.665559 ACAATACCAAATGCTAGTGGGTATATG 59.334 37.037 0.00 0.00 42.43 1.78
986 989 2.761559 TGTACATGGACCAAACTGTCG 58.238 47.619 5.38 0.00 36.07 4.35
1002 1005 9.379791 ACCTTTTGTCTAGCTAACATATTGTAC 57.620 33.333 8.82 0.00 0.00 2.90
1013 1017 5.677319 AGCACATACCTTTTGTCTAGCTA 57.323 39.130 0.00 0.00 0.00 3.32
1055 1059 9.764363 CTATCTAGCACAAAACAACCATATAGA 57.236 33.333 0.00 0.00 0.00 1.98
1101 1105 0.341961 TAGTAGGCCCTGGGACACAT 59.658 55.000 23.47 8.09 29.21 3.21
1365 1369 4.150897 ACAAGGTCAGTCTTGCTGTTTA 57.849 40.909 4.71 0.00 45.77 2.01
1370 1374 5.163343 TGTTAACTACAAGGTCAGTCTTGCT 60.163 40.000 7.22 0.00 45.77 3.91
1489 1493 3.843027 CACTCTCCCTATTCCTATGCCAT 59.157 47.826 0.00 0.00 0.00 4.40
1685 1689 2.187946 GATGCCAGTGAGGTCCCG 59.812 66.667 0.00 0.00 40.61 5.14
1695 1699 2.369983 ATGGTTACATGGGATGCCAG 57.630 50.000 12.95 6.63 35.57 4.85
1762 1766 4.989279 TGCTTTCTTGAAGAACTTGCTT 57.011 36.364 19.77 0.00 37.57 3.91
1782 1786 5.750067 GGTTCATAAGCTGCCACATAAAATG 59.250 40.000 0.00 0.00 0.00 2.32
1870 1874 4.673841 GCTCTCTTCACTTTAAATGCAGGC 60.674 45.833 0.00 0.00 0.00 4.85
1893 1897 7.119553 CCTTGATCCTCTTCTCTTTCTTTCTTG 59.880 40.741 0.00 0.00 0.00 3.02
2193 2202 5.405935 TGTATGAGAAGTTCTTGCTGCTA 57.594 39.130 6.88 0.00 0.00 3.49
2213 2225 1.285373 TGGTGTTGTTGTAGGGGTTGT 59.715 47.619 0.00 0.00 0.00 3.32
2218 2230 3.440173 CAGCTATTGGTGTTGTTGTAGGG 59.560 47.826 0.00 0.00 36.97 3.53
2387 2610 3.373220 CCAGTAGTAGATGTGGAGGGAGT 60.373 52.174 0.00 0.00 31.04 3.85
2499 2722 6.032094 CCAAAGCAAGATCACATTGTATCAC 58.968 40.000 0.00 0.00 0.00 3.06
2556 2846 9.950496 ATAACTCCAGCATATTAATAACTCCAG 57.050 33.333 0.00 1.92 0.00 3.86
2568 2858 8.551440 TCCAGCATATTAATAACTCCAGCATAT 58.449 33.333 0.00 0.00 0.00 1.78
2627 2961 6.866480 TCAATCATAAAAAGAACCATCCAGC 58.134 36.000 0.00 0.00 0.00 4.85
2714 3048 5.332743 ACCTCTCCAAGATCCATCTCTATC 58.667 45.833 0.00 0.00 35.76 2.08
2717 3051 3.575805 GACCTCTCCAAGATCCATCTCT 58.424 50.000 0.00 0.00 35.76 3.10
2718 3052 2.295909 CGACCTCTCCAAGATCCATCTC 59.704 54.545 0.00 0.00 35.76 2.75
2719 3053 2.315176 CGACCTCTCCAAGATCCATCT 58.685 52.381 0.00 0.00 39.22 2.90
2721 3055 2.166907 ACGACCTCTCCAAGATCCAT 57.833 50.000 0.00 0.00 0.00 3.41
2722 3056 1.550524 CAACGACCTCTCCAAGATCCA 59.449 52.381 0.00 0.00 0.00 3.41
2724 3058 3.131223 TCATCAACGACCTCTCCAAGATC 59.869 47.826 0.00 0.00 0.00 2.75
2725 3059 3.099905 TCATCAACGACCTCTCCAAGAT 58.900 45.455 0.00 0.00 0.00 2.40
2726 3060 2.525368 TCATCAACGACCTCTCCAAGA 58.475 47.619 0.00 0.00 0.00 3.02
2729 3063 2.525368 TCTTCATCAACGACCTCTCCA 58.475 47.619 0.00 0.00 0.00 3.86
2730 3064 3.193691 TCTTCTTCATCAACGACCTCTCC 59.806 47.826 0.00 0.00 0.00 3.71
2731 3065 4.442375 TCTTCTTCATCAACGACCTCTC 57.558 45.455 0.00 0.00 0.00 3.20
2733 3067 4.307432 TGTTCTTCTTCATCAACGACCTC 58.693 43.478 0.00 0.00 0.00 3.85
2734 3068 4.310769 CTGTTCTTCTTCATCAACGACCT 58.689 43.478 0.00 0.00 0.00 3.85
2738 3072 3.364366 GCACCTGTTCTTCTTCATCAACG 60.364 47.826 0.00 0.00 0.00 4.10
2747 3199 1.140312 TCCTTGGCACCTGTTCTTCT 58.860 50.000 0.00 0.00 0.00 2.85
2748 3200 2.206576 ATCCTTGGCACCTGTTCTTC 57.793 50.000 0.00 0.00 0.00 2.87
2750 3202 2.684927 GCATATCCTTGGCACCTGTTCT 60.685 50.000 0.00 0.00 0.00 3.01
2751 3203 1.678101 GCATATCCTTGGCACCTGTTC 59.322 52.381 0.00 0.00 0.00 3.18
2752 3204 1.285962 AGCATATCCTTGGCACCTGTT 59.714 47.619 0.00 0.00 0.00 3.16
2754 3206 1.602311 GAGCATATCCTTGGCACCTG 58.398 55.000 0.00 0.00 0.00 4.00
2756 3208 0.886490 CCGAGCATATCCTTGGCACC 60.886 60.000 0.00 0.00 29.89 5.01
2757 3209 0.886490 CCCGAGCATATCCTTGGCAC 60.886 60.000 0.00 0.00 35.40 5.01
2758 3210 1.451504 CCCGAGCATATCCTTGGCA 59.548 57.895 0.00 0.00 35.40 4.92
2760 3212 0.035458 GACCCCGAGCATATCCTTGG 59.965 60.000 0.00 0.00 36.33 3.61
2761 3213 0.319900 CGACCCCGAGCATATCCTTG 60.320 60.000 0.00 0.00 38.22 3.61
2762 3214 0.469331 TCGACCCCGAGCATATCCTT 60.469 55.000 0.00 0.00 40.30 3.36
2763 3215 1.153061 TCGACCCCGAGCATATCCT 59.847 57.895 0.00 0.00 40.30 3.24
2764 3216 1.289380 GTCGACCCCGAGCATATCC 59.711 63.158 3.51 0.00 46.52 2.59
2773 3227 4.729856 GTGGTTCCGTCGACCCCG 62.730 72.222 10.58 0.00 36.30 5.73
2775 3229 1.535204 TTAGGTGGTTCCGTCGACCC 61.535 60.000 10.58 5.77 41.99 4.46
2776 3230 0.318120 TTTAGGTGGTTCCGTCGACC 59.682 55.000 10.58 0.00 41.99 4.79
2779 3233 1.017701 GGCTTTAGGTGGTTCCGTCG 61.018 60.000 0.00 0.00 41.99 5.12
2780 3234 0.035739 TGGCTTTAGGTGGTTCCGTC 59.964 55.000 0.00 0.00 41.99 4.79
2781 3235 0.696501 ATGGCTTTAGGTGGTTCCGT 59.303 50.000 0.00 0.00 41.99 4.69
2782 3236 1.339631 TGATGGCTTTAGGTGGTTCCG 60.340 52.381 0.00 0.00 41.99 4.30
2783 3237 2.507407 TGATGGCTTTAGGTGGTTCC 57.493 50.000 0.00 0.00 0.00 3.62
2784 3238 3.891049 AGATGATGGCTTTAGGTGGTTC 58.109 45.455 0.00 0.00 0.00 3.62
2785 3239 4.141390 CCTAGATGATGGCTTTAGGTGGTT 60.141 45.833 0.00 0.00 0.00 3.67
2786 3240 3.392616 CCTAGATGATGGCTTTAGGTGGT 59.607 47.826 0.00 0.00 0.00 4.16
2787 3241 3.244700 CCCTAGATGATGGCTTTAGGTGG 60.245 52.174 0.00 0.00 31.06 4.61
2788 3242 3.392616 ACCCTAGATGATGGCTTTAGGTG 59.607 47.826 0.00 0.00 31.06 4.00
2789 3243 3.648545 GACCCTAGATGATGGCTTTAGGT 59.351 47.826 0.00 0.00 31.06 3.08
2790 3244 3.906846 AGACCCTAGATGATGGCTTTAGG 59.093 47.826 0.00 0.00 0.00 2.69
2791 3245 5.186797 CCTAGACCCTAGATGATGGCTTTAG 59.813 48.000 2.77 0.00 0.00 1.85
2793 3247 3.906846 CCTAGACCCTAGATGATGGCTTT 59.093 47.826 2.77 0.00 0.00 3.51
2794 3248 3.515562 CCTAGACCCTAGATGATGGCTT 58.484 50.000 2.77 0.00 0.00 4.35
2796 3250 2.183679 CCCTAGACCCTAGATGATGGC 58.816 57.143 2.77 0.00 0.00 4.40
2797 3251 3.169099 CACCCTAGACCCTAGATGATGG 58.831 54.545 2.77 0.00 0.00 3.51
2798 3252 3.169099 CCACCCTAGACCCTAGATGATG 58.831 54.545 2.77 0.00 0.00 3.07
2799 3253 2.493687 GCCACCCTAGACCCTAGATGAT 60.494 54.545 2.77 0.00 0.00 2.45
2801 3255 1.133009 AGCCACCCTAGACCCTAGATG 60.133 57.143 2.77 1.68 0.00 2.90
2802 3256 1.148236 GAGCCACCCTAGACCCTAGAT 59.852 57.143 2.77 0.00 0.00 1.98
2807 3261 3.155167 CCGAGCCACCCTAGACCC 61.155 72.222 0.00 0.00 0.00 4.46
2809 3263 1.457831 ATCCCGAGCCACCCTAGAC 60.458 63.158 0.00 0.00 0.00 2.59
2812 3266 2.520982 CGATCCCGAGCCACCCTA 60.521 66.667 0.00 0.00 38.22 3.53
2814 3268 4.222847 GTCGATCCCGAGCCACCC 62.223 72.222 0.00 0.00 46.52 4.61
2826 3590 1.405121 GCTTTAGGTGGTTCCGTCGAT 60.405 52.381 0.00 0.00 41.99 3.59
2852 3616 0.984995 GAGCCACCCTAGACCAAACT 59.015 55.000 0.00 0.00 0.00 2.66
2853 3617 0.391263 CGAGCCACCCTAGACCAAAC 60.391 60.000 0.00 0.00 0.00 2.93
2854 3618 1.550130 CCGAGCCACCCTAGACCAAA 61.550 60.000 0.00 0.00 0.00 3.28
2855 3619 1.987855 CCGAGCCACCCTAGACCAA 60.988 63.158 0.00 0.00 0.00 3.67
2856 3620 2.363795 CCGAGCCACCCTAGACCA 60.364 66.667 0.00 0.00 0.00 4.02
2857 3621 3.155167 CCCGAGCCACCCTAGACC 61.155 72.222 0.00 0.00 0.00 3.85
3057 3821 2.507407 TGATGGCTTTAGGTGGTTCC 57.493 50.000 0.00 0.00 0.00 3.62
3058 3822 5.170748 CAAAATGATGGCTTTAGGTGGTTC 58.829 41.667 0.00 0.00 0.00 3.62
3059 3823 4.020307 CCAAAATGATGGCTTTAGGTGGTT 60.020 41.667 0.00 0.00 32.78 3.67
3060 3824 3.515104 CCAAAATGATGGCTTTAGGTGGT 59.485 43.478 0.00 0.00 32.78 4.16
3061 3825 3.118665 CCCAAAATGATGGCTTTAGGTGG 60.119 47.826 0.00 0.00 39.26 4.61
3062 3826 3.515104 ACCCAAAATGATGGCTTTAGGTG 59.485 43.478 0.00 0.00 39.26 4.00
3063 3827 3.790126 ACCCAAAATGATGGCTTTAGGT 58.210 40.909 0.00 0.00 39.26 3.08
3064 3828 4.824479 AACCCAAAATGATGGCTTTAGG 57.176 40.909 0.00 0.00 39.26 2.69
3065 3829 5.412286 CCAAAACCCAAAATGATGGCTTTAG 59.588 40.000 0.00 0.00 39.26 1.85
3066 3830 5.163152 ACCAAAACCCAAAATGATGGCTTTA 60.163 36.000 0.00 0.00 39.26 1.85
3067 3831 4.143543 CCAAAACCCAAAATGATGGCTTT 58.856 39.130 0.00 0.00 39.26 3.51
3068 3832 3.138098 ACCAAAACCCAAAATGATGGCTT 59.862 39.130 0.00 0.00 39.26 4.35
3069 3833 2.710471 ACCAAAACCCAAAATGATGGCT 59.290 40.909 0.00 0.00 39.26 4.75
3070 3834 2.813172 CACCAAAACCCAAAATGATGGC 59.187 45.455 0.00 0.00 39.26 4.40
3071 3835 3.410508 CCACCAAAACCCAAAATGATGG 58.589 45.455 0.00 0.00 40.35 3.51
3072 3836 2.813172 GCCACCAAAACCCAAAATGATG 59.187 45.455 0.00 0.00 0.00 3.07
3073 3837 2.710471 AGCCACCAAAACCCAAAATGAT 59.290 40.909 0.00 0.00 0.00 2.45
3074 3838 2.103941 GAGCCACCAAAACCCAAAATGA 59.896 45.455 0.00 0.00 0.00 2.57
3075 3839 2.493035 GAGCCACCAAAACCCAAAATG 58.507 47.619 0.00 0.00 0.00 2.32
3076 3840 1.069978 CGAGCCACCAAAACCCAAAAT 59.930 47.619 0.00 0.00 0.00 1.82
3099 3912 3.055675 TGGATTTAGGTGGTTTCGTCGAT 60.056 43.478 0.00 0.00 0.00 3.59
3106 3919 6.239572 CCAAAGTTGATGGATTTAGGTGGTTT 60.240 38.462 0.00 0.00 40.56 3.27
3118 3931 3.009033 CACCCTAGACCAAAGTTGATGGA 59.991 47.826 0.43 0.00 40.56 3.41
3119 3932 3.347216 CACCCTAGACCAAAGTTGATGG 58.653 50.000 0.00 0.00 43.84 3.51
3238 7223 1.336887 CCAACACCGTCGATCTTGAGT 60.337 52.381 0.00 0.00 0.00 3.41
3243 7228 1.189524 TTCCCCAACACCGTCGATCT 61.190 55.000 0.00 0.00 0.00 2.75
3245 7230 1.004200 GTTCCCCAACACCGTCGAT 60.004 57.895 0.00 0.00 32.14 3.59
3253 7238 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
3254 7239 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
3255 7240 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3256 7241 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
3286 7271 7.398380 ATCACCATGATCTTACGTGTGCGTA 62.398 44.000 0.00 0.00 40.49 4.42
3287 7272 6.703043 ATCACCATGATCTTACGTGTGCGT 62.703 45.833 0.00 0.00 43.22 5.24
3288 7273 1.324435 CACCATGATCTTACGTGTGCG 59.676 52.381 0.00 0.00 44.93 5.34
3289 7274 2.616960 TCACCATGATCTTACGTGTGC 58.383 47.619 0.00 0.00 0.00 4.57
3290 7275 3.001634 GCATCACCATGATCTTACGTGTG 59.998 47.826 0.00 0.00 34.28 3.82
3291 7276 3.198068 GCATCACCATGATCTTACGTGT 58.802 45.455 0.00 0.00 34.28 4.49
3292 7277 3.197265 TGCATCACCATGATCTTACGTG 58.803 45.455 0.00 0.00 34.28 4.49
3293 7278 3.541996 TGCATCACCATGATCTTACGT 57.458 42.857 0.00 0.00 34.28 3.57
3294 7279 4.092529 GCTATGCATCACCATGATCTTACG 59.907 45.833 0.19 0.00 34.28 3.18
3295 7280 4.999311 TGCTATGCATCACCATGATCTTAC 59.001 41.667 0.19 0.00 34.28 2.34
3296 7281 5.231702 TGCTATGCATCACCATGATCTTA 57.768 39.130 0.19 0.00 34.28 2.10
3297 7282 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
3298 7283 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
3299 7284 3.566742 TGTTGCTATGCATCACCATGATC 59.433 43.478 0.19 0.00 38.76 2.92
3300 7285 3.558033 TGTTGCTATGCATCACCATGAT 58.442 40.909 0.19 0.00 38.76 2.45
3301 7286 3.002038 TGTTGCTATGCATCACCATGA 57.998 42.857 0.19 0.00 38.76 3.07
3302 7287 3.379057 TCTTGTTGCTATGCATCACCATG 59.621 43.478 0.19 0.00 37.87 3.66
3303 7288 3.623703 TCTTGTTGCTATGCATCACCAT 58.376 40.909 0.19 0.00 37.87 3.55
3304 7289 3.011818 CTCTTGTTGCTATGCATCACCA 58.988 45.455 0.19 0.00 37.87 4.17
3305 7290 2.357009 CCTCTTGTTGCTATGCATCACC 59.643 50.000 0.19 0.00 37.87 4.02
3306 7291 2.357009 CCCTCTTGTTGCTATGCATCAC 59.643 50.000 0.19 0.00 37.87 3.06
3307 7292 2.646930 CCCTCTTGTTGCTATGCATCA 58.353 47.619 0.19 0.00 38.76 3.07
3308 7293 1.952296 CCCCTCTTGTTGCTATGCATC 59.048 52.381 0.19 0.00 38.76 3.91
3309 7294 1.565759 TCCCCTCTTGTTGCTATGCAT 59.434 47.619 3.79 3.79 38.76 3.96
3310 7295 0.991146 TCCCCTCTTGTTGCTATGCA 59.009 50.000 0.00 0.00 36.47 3.96
3311 7296 1.210478 TCTCCCCTCTTGTTGCTATGC 59.790 52.381 0.00 0.00 0.00 3.14
3312 7297 2.503356 ACTCTCCCCTCTTGTTGCTATG 59.497 50.000 0.00 0.00 0.00 2.23
3313 7298 2.503356 CACTCTCCCCTCTTGTTGCTAT 59.497 50.000 0.00 0.00 0.00 2.97
3314 7299 1.902508 CACTCTCCCCTCTTGTTGCTA 59.097 52.381 0.00 0.00 0.00 3.49
3315 7300 0.689623 CACTCTCCCCTCTTGTTGCT 59.310 55.000 0.00 0.00 0.00 3.91
3316 7301 0.398318 ACACTCTCCCCTCTTGTTGC 59.602 55.000 0.00 0.00 0.00 4.17
3317 7302 2.498167 CAACACTCTCCCCTCTTGTTG 58.502 52.381 0.00 0.00 40.65 3.33
3318 7303 2.104963 GACAACACTCTCCCCTCTTGTT 59.895 50.000 0.00 0.00 0.00 2.83
3319 7304 1.694696 GACAACACTCTCCCCTCTTGT 59.305 52.381 0.00 0.00 0.00 3.16
3320 7305 1.974236 AGACAACACTCTCCCCTCTTG 59.026 52.381 0.00 0.00 0.00 3.02
3321 7306 2.407340 AGACAACACTCTCCCCTCTT 57.593 50.000 0.00 0.00 0.00 2.85
3322 7307 2.810164 GTAGACAACACTCTCCCCTCT 58.190 52.381 0.00 0.00 0.00 3.69
3323 7308 1.473278 CGTAGACAACACTCTCCCCTC 59.527 57.143 0.00 0.00 0.00 4.30
3324 7309 1.203025 ACGTAGACAACACTCTCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
3325 7310 1.254954 ACGTAGACAACACTCTCCCC 58.745 55.000 0.00 0.00 0.00 4.81
3326 7311 2.163211 GGTACGTAGACAACACTCTCCC 59.837 54.545 0.00 0.00 0.00 4.30
3327 7312 2.163211 GGGTACGTAGACAACACTCTCC 59.837 54.545 0.00 0.00 0.00 3.71
3328 7313 3.080319 AGGGTACGTAGACAACACTCTC 58.920 50.000 0.00 0.00 0.00 3.20
3329 7314 3.080319 GAGGGTACGTAGACAACACTCT 58.920 50.000 9.87 0.00 39.95 3.24
3330 7315 2.159599 CGAGGGTACGTAGACAACACTC 60.160 54.545 7.48 7.48 39.74 3.51
3331 7316 1.808945 CGAGGGTACGTAGACAACACT 59.191 52.381 0.00 0.00 0.00 3.55
3332 7317 1.537202 ACGAGGGTACGTAGACAACAC 59.463 52.381 0.00 0.00 44.72 3.32
3333 7318 1.536766 CACGAGGGTACGTAGACAACA 59.463 52.381 0.00 0.00 44.76 3.33
3334 7319 1.135575 CCACGAGGGTACGTAGACAAC 60.136 57.143 0.00 0.00 44.76 3.32
3335 7320 1.167851 CCACGAGGGTACGTAGACAA 58.832 55.000 0.00 0.00 44.76 3.18
3336 7321 0.324614 TCCACGAGGGTACGTAGACA 59.675 55.000 0.00 0.00 44.76 3.41
3337 7322 0.729690 GTCCACGAGGGTACGTAGAC 59.270 60.000 0.00 0.00 44.02 2.59
3338 7323 0.392998 GGTCCACGAGGGTACGTAGA 60.393 60.000 0.00 0.00 44.76 2.59
3339 7324 2.101700 GGTCCACGAGGGTACGTAG 58.898 63.158 0.00 0.00 44.76 3.51
3340 7325 4.319133 GGTCCACGAGGGTACGTA 57.681 61.111 0.00 0.00 44.76 3.57
3357 7342 1.278637 GTCAACACTTCCGTTGCCG 59.721 57.895 0.00 0.00 44.80 5.69
3358 7343 0.028902 GTGTCAACACTTCCGTTGCC 59.971 55.000 6.03 0.00 44.80 4.52
3359 7344 0.730265 TGTGTCAACACTTCCGTTGC 59.270 50.000 13.94 0.00 46.55 4.17
3360 7345 2.780993 GTTGTGTCAACACTTCCGTTG 58.219 47.619 13.94 0.00 46.55 4.10
3361 7346 1.395608 CGTTGTGTCAACACTTCCGTT 59.604 47.619 13.94 0.00 46.55 4.44
3362 7347 1.003851 CGTTGTGTCAACACTTCCGT 58.996 50.000 13.94 0.00 46.55 4.69
3363 7348 1.003851 ACGTTGTGTCAACACTTCCG 58.996 50.000 13.94 13.94 46.55 4.30
3364 7349 3.450578 TCTACGTTGTGTCAACACTTCC 58.549 45.455 13.94 2.07 46.55 3.46
3365 7350 3.489785 CCTCTACGTTGTGTCAACACTTC 59.510 47.826 13.94 6.54 46.55 3.01
3366 7351 3.131577 TCCTCTACGTTGTGTCAACACTT 59.868 43.478 13.94 0.01 46.55 3.16
3367 7352 2.691526 TCCTCTACGTTGTGTCAACACT 59.308 45.455 13.94 0.00 46.55 3.55
3368 7353 3.088194 TCCTCTACGTTGTGTCAACAC 57.912 47.619 6.33 6.33 46.59 3.32
3369 7354 3.131577 ACTTCCTCTACGTTGTGTCAACA 59.868 43.478 12.08 0.00 0.00 3.33
3370 7355 3.714391 ACTTCCTCTACGTTGTGTCAAC 58.286 45.455 0.00 2.95 0.00 3.18
3371 7356 4.581824 ACTACTTCCTCTACGTTGTGTCAA 59.418 41.667 0.00 0.00 0.00 3.18
3372 7357 4.139786 ACTACTTCCTCTACGTTGTGTCA 58.860 43.478 0.00 0.00 0.00 3.58
3373 7358 4.668686 CGACTACTTCCTCTACGTTGTGTC 60.669 50.000 0.00 0.00 0.00 3.67
3374 7359 3.188048 CGACTACTTCCTCTACGTTGTGT 59.812 47.826 0.00 0.00 0.00 3.72
3375 7360 3.188048 ACGACTACTTCCTCTACGTTGTG 59.812 47.826 0.00 0.00 0.00 3.33
3376 7361 3.406764 ACGACTACTTCCTCTACGTTGT 58.593 45.455 0.00 0.00 0.00 3.32
3377 7362 4.491602 CGTACGACTACTTCCTCTACGTTG 60.492 50.000 10.44 0.00 34.52 4.10
3378 7363 3.614616 CGTACGACTACTTCCTCTACGTT 59.385 47.826 10.44 0.00 34.52 3.99
3379 7364 3.182967 CGTACGACTACTTCCTCTACGT 58.817 50.000 10.44 0.00 36.52 3.57
3380 7365 3.182967 ACGTACGACTACTTCCTCTACG 58.817 50.000 24.41 0.00 33.44 3.51
3381 7366 4.429108 AGACGTACGACTACTTCCTCTAC 58.571 47.826 24.41 0.00 0.00 2.59
3382 7367 4.727507 AGACGTACGACTACTTCCTCTA 57.272 45.455 24.41 0.00 0.00 2.43
3383 7368 3.608316 AGACGTACGACTACTTCCTCT 57.392 47.619 24.41 7.87 0.00 3.69
3384 7369 4.257536 GAAGACGTACGACTACTTCCTC 57.742 50.000 24.41 10.47 33.28 3.71
3386 7371 3.397405 GGAAGACGTACGACTACTTCC 57.603 52.381 29.95 29.95 45.83 3.46
3387 7372 2.222908 CGGGAAGACGTACGACTACTTC 60.223 54.545 24.41 24.60 37.02 3.01
3388 7373 1.734465 CGGGAAGACGTACGACTACTT 59.266 52.381 24.41 19.15 0.00 2.24
3389 7374 1.066858 TCGGGAAGACGTACGACTACT 60.067 52.381 24.41 6.98 34.94 2.57
3390 7375 1.359848 TCGGGAAGACGTACGACTAC 58.640 55.000 24.41 16.64 34.94 2.73
3391 7376 2.205074 GATCGGGAAGACGTACGACTA 58.795 52.381 24.41 5.92 38.24 2.59
3392 7377 1.012841 GATCGGGAAGACGTACGACT 58.987 55.000 24.41 19.11 38.24 4.18
3393 7378 0.028637 GGATCGGGAAGACGTACGAC 59.971 60.000 24.41 16.77 38.24 4.34
3394 7379 1.431488 CGGATCGGGAAGACGTACGA 61.431 60.000 24.41 0.00 39.85 3.43
3395 7380 1.010350 CGGATCGGGAAGACGTACG 60.010 63.158 15.01 15.01 34.94 3.67
3396 7381 0.028637 GTCGGATCGGGAAGACGTAC 59.971 60.000 0.00 0.00 34.94 3.67
3397 7382 1.097547 GGTCGGATCGGGAAGACGTA 61.098 60.000 0.00 0.00 34.68 3.57
3398 7383 2.413142 GGTCGGATCGGGAAGACGT 61.413 63.158 0.00 0.00 34.68 4.34
3399 7384 2.412112 GGTCGGATCGGGAAGACG 59.588 66.667 0.00 0.00 34.68 4.18
3400 7385 1.453762 ATCGGTCGGATCGGGAAGAC 61.454 60.000 11.21 0.00 0.00 3.01
3401 7386 1.152819 ATCGGTCGGATCGGGAAGA 60.153 57.895 11.21 0.00 0.00 2.87
3402 7387 1.286260 GATCGGTCGGATCGGGAAG 59.714 63.158 11.21 0.00 42.02 3.46
3403 7388 3.440151 GATCGGTCGGATCGGGAA 58.560 61.111 11.21 0.00 42.02 3.97
3409 7394 1.038280 GGTACTTGGATCGGTCGGAT 58.962 55.000 0.00 0.00 38.35 4.18
3410 7395 1.378882 CGGTACTTGGATCGGTCGGA 61.379 60.000 0.00 0.00 0.00 4.55
3411 7396 1.065273 CGGTACTTGGATCGGTCGG 59.935 63.158 0.00 0.00 0.00 4.79
3412 7397 0.452987 TTCGGTACTTGGATCGGTCG 59.547 55.000 0.00 0.00 0.00 4.79
3413 7398 1.796617 CGTTCGGTACTTGGATCGGTC 60.797 57.143 0.00 0.00 0.00 4.79
3414 7399 0.171903 CGTTCGGTACTTGGATCGGT 59.828 55.000 0.00 0.00 0.00 4.69
3415 7400 0.171903 ACGTTCGGTACTTGGATCGG 59.828 55.000 13.18 0.00 31.53 4.18
3416 7401 2.444351 GTACGTTCGGTACTTGGATCG 58.556 52.381 0.00 2.46 46.50 3.69
3428 7413 2.505557 GGAGGTGCCGTACGTTCG 60.506 66.667 15.21 7.68 0.00 3.95
3437 7422 2.435059 GCAGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
3438 7423 2.029844 GTGCAGAACTCGGAGGTGC 61.030 63.158 17.45 17.45 34.62 5.01
3439 7424 0.946221 GTGTGCAGAACTCGGAGGTG 60.946 60.000 10.23 5.07 0.00 4.00
3440 7425 1.367840 GTGTGCAGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
3441 7426 1.734477 CGTGTGCAGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
3442 7427 3.848142 CGTGTGCAGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
3446 7431 1.933853 AGTTGAACGTGTGCAGAACTC 59.066 47.619 0.00 0.00 0.00 3.01
3447 7432 2.024176 AGTTGAACGTGTGCAGAACT 57.976 45.000 0.00 0.00 0.00 3.01
3448 7433 2.440501 CAAGTTGAACGTGTGCAGAAC 58.559 47.619 3.03 0.00 0.00 3.01
3449 7434 1.400142 CCAAGTTGAACGTGTGCAGAA 59.600 47.619 10.18 0.00 0.00 3.02
3450 7435 1.013596 CCAAGTTGAACGTGTGCAGA 58.986 50.000 10.18 0.00 0.00 4.26
3451 7436 0.732571 ACCAAGTTGAACGTGTGCAG 59.267 50.000 10.18 0.00 0.00 4.41
3452 7437 2.861364 ACCAAGTTGAACGTGTGCA 58.139 47.368 10.18 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.