Multiple sequence alignment - TraesCS2A01G188600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G188600 chr2A 100.000 3667 0 0 1 3667 154412760 154416426 0.000000e+00 6772.0
1 TraesCS2A01G188600 chr2A 82.151 1339 230 8 1229 2564 154422566 154421234 0.000000e+00 1140.0
2 TraesCS2A01G188600 chr2B 93.330 3658 140 47 3 3635 207601260 207597682 0.000000e+00 5308.0
3 TraesCS2A01G188600 chr2B 82.186 1336 229 8 1229 2561 207482275 207483604 0.000000e+00 1140.0
4 TraesCS2A01G188600 chr2B 80.251 1357 255 11 1229 2580 207471408 207472756 0.000000e+00 1009.0
5 TraesCS2A01G188600 chr2D 95.075 2396 76 19 624 3003 147968863 147966494 0.000000e+00 3733.0
6 TraesCS2A01G188600 chr2D 94.286 595 19 9 3044 3635 147966487 147965905 0.000000e+00 896.0
7 TraesCS2A01G188600 chr2D 91.503 306 19 6 326 626 147971175 147970872 7.330000e-112 414.0
8 TraesCS2A01G188600 chr2D 99.020 102 1 0 133 234 147971277 147971176 2.250000e-42 183.0
9 TraesCS2A01G188600 chr2D 100.000 38 0 0 1 38 147971364 147971327 1.830000e-08 71.3
10 TraesCS2A01G188600 chr1B 80.645 1364 255 7 1220 2580 674004552 674003195 0.000000e+00 1048.0
11 TraesCS2A01G188600 chr4D 73.584 1359 307 37 1240 2563 434030834 434029493 1.190000e-129 473.0
12 TraesCS2A01G188600 chr7B 72.826 1288 288 45 1228 2493 61078960 61077713 2.070000e-102 383.0
13 TraesCS2A01G188600 chr7A 72.636 1290 290 49 1228 2493 107794007 107792757 5.790000e-98 368.0
14 TraesCS2A01G188600 chr5D 71.972 1288 305 41 1227 2492 497493010 497491757 9.820000e-86 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G188600 chr2A 154412760 154416426 3666 False 6772.00 6772 100.0000 1 3667 1 chr2A.!!$F1 3666
1 TraesCS2A01G188600 chr2A 154421234 154422566 1332 True 1140.00 1140 82.1510 1229 2564 1 chr2A.!!$R1 1335
2 TraesCS2A01G188600 chr2B 207597682 207601260 3578 True 5308.00 5308 93.3300 3 3635 1 chr2B.!!$R1 3632
3 TraesCS2A01G188600 chr2B 207482275 207483604 1329 False 1140.00 1140 82.1860 1229 2561 1 chr2B.!!$F2 1332
4 TraesCS2A01G188600 chr2B 207471408 207472756 1348 False 1009.00 1009 80.2510 1229 2580 1 chr2B.!!$F1 1351
5 TraesCS2A01G188600 chr2D 147965905 147971364 5459 True 1059.46 3733 95.9768 1 3635 5 chr2D.!!$R1 3634
6 TraesCS2A01G188600 chr1B 674003195 674004552 1357 True 1048.00 1048 80.6450 1220 2580 1 chr1B.!!$R1 1360
7 TraesCS2A01G188600 chr4D 434029493 434030834 1341 True 473.00 473 73.5840 1240 2563 1 chr4D.!!$R1 1323
8 TraesCS2A01G188600 chr7B 61077713 61078960 1247 True 383.00 383 72.8260 1228 2493 1 chr7B.!!$R1 1265
9 TraesCS2A01G188600 chr7A 107792757 107794007 1250 True 368.00 368 72.6360 1228 2493 1 chr7A.!!$R1 1265
10 TraesCS2A01G188600 chr5D 497491757 497493010 1253 True 327.00 327 71.9720 1227 2492 1 chr5D.!!$R1 1265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.035343 GCCGGGTTTCTAGGAAGCTT 60.035 55.0 12.62 0.00 0.00 3.74 F
323 438 0.176910 CTTTCGAGGGAGGCCTTCTC 59.823 60.0 20.78 20.78 41.71 2.87 F
454 575 0.184451 GATCCACCCCACATGCATCT 59.816 55.0 0.00 0.00 0.00 2.90 F
578 699 0.393077 ACGTCCAACAACTCCAGGAG 59.607 55.0 15.72 15.72 35.52 3.69 F
1130 3272 0.533755 GGTACGTCTAGCTCGCCCTA 60.534 60.0 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 3263 0.448197 GCAAGAACTTTAGGGCGAGC 59.552 55.000 0.0 0.0 0.00 5.03 R
2111 4276 0.842030 TGGCCACCAGGATGAAGACT 60.842 55.000 0.0 0.0 39.69 3.24 R
2333 4524 0.541063 TCTCCGAGCTGTACACCCAA 60.541 55.000 0.0 0.0 0.00 4.12 R
2580 4771 4.312231 CTTGTGCGTGGCCGTGTG 62.312 66.667 0.0 0.0 36.15 3.82 R
2978 5173 0.172803 AACGCCACGGAAGTAGCTAG 59.827 55.000 0.0 0.0 46.74 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.447757 TGCCAGATGGATTATTGTGATTGA 58.552 37.500 2.18 0.00 37.39 2.57
86 87 2.192605 CCCCCTGAAAATTGAGCCG 58.807 57.895 0.00 0.00 0.00 5.52
87 88 1.322538 CCCCCTGAAAATTGAGCCGG 61.323 60.000 0.00 0.00 0.00 6.13
88 89 1.322538 CCCCTGAAAATTGAGCCGGG 61.323 60.000 2.18 0.00 0.00 5.73
89 90 0.611896 CCCTGAAAATTGAGCCGGGT 60.612 55.000 5.45 5.45 0.00 5.28
90 91 1.256812 CCTGAAAATTGAGCCGGGTT 58.743 50.000 8.00 0.00 0.00 4.11
91 92 1.618343 CCTGAAAATTGAGCCGGGTTT 59.382 47.619 8.00 0.00 0.00 3.27
92 93 2.352715 CCTGAAAATTGAGCCGGGTTTC 60.353 50.000 8.00 7.91 0.00 2.78
93 94 2.558359 CTGAAAATTGAGCCGGGTTTCT 59.442 45.455 8.00 0.00 0.00 2.52
94 95 3.756434 CTGAAAATTGAGCCGGGTTTCTA 59.244 43.478 8.00 0.00 0.00 2.10
95 96 3.756434 TGAAAATTGAGCCGGGTTTCTAG 59.244 43.478 8.00 0.00 0.00 2.43
96 97 2.420058 AATTGAGCCGGGTTTCTAGG 57.580 50.000 8.00 0.00 0.00 3.02
97 98 1.580059 ATTGAGCCGGGTTTCTAGGA 58.420 50.000 8.00 0.00 0.00 2.94
98 99 1.354101 TTGAGCCGGGTTTCTAGGAA 58.646 50.000 8.00 0.00 0.00 3.36
99 100 0.902531 TGAGCCGGGTTTCTAGGAAG 59.097 55.000 8.00 0.00 0.00 3.46
100 101 0.462225 GAGCCGGGTTTCTAGGAAGC 60.462 60.000 8.00 4.23 0.00 3.86
101 102 0.910088 AGCCGGGTTTCTAGGAAGCT 60.910 55.000 12.62 1.25 0.00 3.74
102 103 0.035343 GCCGGGTTTCTAGGAAGCTT 60.035 55.000 12.62 0.00 0.00 3.74
103 104 1.208776 GCCGGGTTTCTAGGAAGCTTA 59.791 52.381 12.62 0.00 0.00 3.09
104 105 2.158798 GCCGGGTTTCTAGGAAGCTTAT 60.159 50.000 12.62 0.00 0.00 1.73
105 106 3.467803 CCGGGTTTCTAGGAAGCTTATG 58.532 50.000 12.62 1.43 0.00 1.90
106 107 3.118371 CCGGGTTTCTAGGAAGCTTATGT 60.118 47.826 12.62 0.00 0.00 2.29
129 130 2.309528 AGCGTTTGCAATCCTATCGA 57.690 45.000 0.00 0.00 46.23 3.59
130 131 2.627945 AGCGTTTGCAATCCTATCGAA 58.372 42.857 0.00 0.00 46.23 3.71
234 349 2.483876 TGCTCGAAACTCAAAGGACAG 58.516 47.619 0.00 0.00 0.00 3.51
235 350 1.195674 GCTCGAAACTCAAAGGACAGC 59.804 52.381 0.00 0.00 0.00 4.40
236 351 2.483876 CTCGAAACTCAAAGGACAGCA 58.516 47.619 0.00 0.00 0.00 4.41
237 352 2.872245 CTCGAAACTCAAAGGACAGCAA 59.128 45.455 0.00 0.00 0.00 3.91
238 353 3.476552 TCGAAACTCAAAGGACAGCAAT 58.523 40.909 0.00 0.00 0.00 3.56
239 354 4.637276 TCGAAACTCAAAGGACAGCAATA 58.363 39.130 0.00 0.00 0.00 1.90
240 355 4.451096 TCGAAACTCAAAGGACAGCAATAC 59.549 41.667 0.00 0.00 0.00 1.89
241 356 4.452455 CGAAACTCAAAGGACAGCAATACT 59.548 41.667 0.00 0.00 0.00 2.12
272 387 3.713936 CAAGCATGCATGAGTGGTG 57.286 52.632 30.64 14.59 0.00 4.17
273 388 1.170442 CAAGCATGCATGAGTGGTGA 58.830 50.000 30.64 0.00 0.00 4.02
274 389 1.542472 CAAGCATGCATGAGTGGTGAA 59.458 47.619 30.64 0.00 0.00 3.18
275 390 1.913778 AGCATGCATGAGTGGTGAAA 58.086 45.000 30.64 0.00 0.00 2.69
276 391 1.816835 AGCATGCATGAGTGGTGAAAG 59.183 47.619 30.64 0.00 0.00 2.62
277 392 1.542915 GCATGCATGAGTGGTGAAAGT 59.457 47.619 30.64 0.00 0.00 2.66
278 393 2.670229 GCATGCATGAGTGGTGAAAGTG 60.670 50.000 30.64 0.00 0.00 3.16
279 394 1.608055 TGCATGAGTGGTGAAAGTGG 58.392 50.000 0.00 0.00 0.00 4.00
280 395 0.242017 GCATGAGTGGTGAAAGTGGC 59.758 55.000 0.00 0.00 0.00 5.01
281 396 0.518636 CATGAGTGGTGAAAGTGGCG 59.481 55.000 0.00 0.00 0.00 5.69
282 397 1.237285 ATGAGTGGTGAAAGTGGCGC 61.237 55.000 0.00 0.00 0.00 6.53
283 398 1.598130 GAGTGGTGAAAGTGGCGCT 60.598 57.895 7.64 0.00 0.00 5.92
284 399 0.320421 GAGTGGTGAAAGTGGCGCTA 60.320 55.000 7.64 0.00 0.00 4.26
285 400 0.602905 AGTGGTGAAAGTGGCGCTAC 60.603 55.000 17.10 17.10 0.00 3.58
286 401 0.882927 GTGGTGAAAGTGGCGCTACA 60.883 55.000 26.36 4.15 0.00 2.74
287 402 0.179043 TGGTGAAAGTGGCGCTACAA 60.179 50.000 26.36 5.60 0.00 2.41
288 403 0.517316 GGTGAAAGTGGCGCTACAAG 59.483 55.000 26.36 0.00 0.00 3.16
289 404 1.226746 GTGAAAGTGGCGCTACAAGT 58.773 50.000 26.36 10.17 0.00 3.16
290 405 1.194772 GTGAAAGTGGCGCTACAAGTC 59.805 52.381 26.36 18.43 0.00 3.01
291 406 1.070134 TGAAAGTGGCGCTACAAGTCT 59.930 47.619 26.36 1.14 0.00 3.24
292 407 2.143925 GAAAGTGGCGCTACAAGTCTT 58.856 47.619 26.36 8.11 0.00 3.01
293 408 2.256117 AAGTGGCGCTACAAGTCTTT 57.744 45.000 26.36 7.34 0.00 2.52
294 409 1.512926 AGTGGCGCTACAAGTCTTTG 58.487 50.000 26.36 0.00 40.24 2.77
296 411 2.036733 AGTGGCGCTACAAGTCTTTGTA 59.963 45.455 26.36 0.80 45.45 2.41
297 412 2.157085 GTGGCGCTACAAGTCTTTGTAC 59.843 50.000 19.95 0.00 45.45 2.90
298 413 1.389106 GGCGCTACAAGTCTTTGTACG 59.611 52.381 7.64 13.14 45.45 3.67
299 414 1.389106 GCGCTACAAGTCTTTGTACGG 59.611 52.381 0.00 6.59 45.45 4.02
300 415 2.669364 CGCTACAAGTCTTTGTACGGT 58.331 47.619 11.19 0.00 45.45 4.83
301 416 3.054878 CGCTACAAGTCTTTGTACGGTT 58.945 45.455 11.19 0.00 45.45 4.44
302 417 3.120782 CGCTACAAGTCTTTGTACGGTTC 59.879 47.826 11.19 0.00 45.45 3.62
303 418 3.120782 GCTACAAGTCTTTGTACGGTTCG 59.879 47.826 0.00 0.00 45.45 3.95
304 419 1.862827 ACAAGTCTTTGTACGGTTCGC 59.137 47.619 0.00 0.00 45.45 4.70
305 420 2.132762 CAAGTCTTTGTACGGTTCGCT 58.867 47.619 0.00 0.00 0.00 4.93
306 421 2.521105 AGTCTTTGTACGGTTCGCTT 57.479 45.000 0.00 0.00 0.00 4.68
307 422 2.830104 AGTCTTTGTACGGTTCGCTTT 58.170 42.857 0.00 0.00 0.00 3.51
308 423 2.798847 AGTCTTTGTACGGTTCGCTTTC 59.201 45.455 0.00 0.00 0.00 2.62
309 424 1.788308 TCTTTGTACGGTTCGCTTTCG 59.212 47.619 0.00 0.00 0.00 3.46
310 425 1.788308 CTTTGTACGGTTCGCTTTCGA 59.212 47.619 0.00 0.00 43.89 3.71
311 426 1.411394 TTGTACGGTTCGCTTTCGAG 58.589 50.000 0.00 0.00 46.34 4.04
312 427 0.387622 TGTACGGTTCGCTTTCGAGG 60.388 55.000 0.00 0.00 46.34 4.63
313 428 1.074872 GTACGGTTCGCTTTCGAGGG 61.075 60.000 0.00 0.00 46.34 4.30
314 429 1.243342 TACGGTTCGCTTTCGAGGGA 61.243 55.000 0.00 0.00 46.34 4.20
315 430 1.805945 CGGTTCGCTTTCGAGGGAG 60.806 63.158 0.00 0.00 46.34 4.30
316 431 1.448013 GGTTCGCTTTCGAGGGAGG 60.448 63.158 0.00 0.00 46.34 4.30
317 432 2.101233 GTTCGCTTTCGAGGGAGGC 61.101 63.158 0.00 0.00 46.34 4.70
318 433 3.310860 TTCGCTTTCGAGGGAGGCC 62.311 63.158 0.00 0.00 46.34 5.19
319 434 3.775654 CGCTTTCGAGGGAGGCCT 61.776 66.667 3.86 3.86 38.10 5.19
320 435 2.671682 GCTTTCGAGGGAGGCCTT 59.328 61.111 6.77 0.00 0.00 4.35
321 436 1.450491 GCTTTCGAGGGAGGCCTTC 60.450 63.158 6.77 3.67 0.00 3.46
322 437 1.904990 GCTTTCGAGGGAGGCCTTCT 61.905 60.000 11.94 10.28 0.00 2.85
323 438 0.176910 CTTTCGAGGGAGGCCTTCTC 59.823 60.000 20.78 20.78 41.71 2.87
334 449 2.780592 GAGGCCTTCTCCCCTTCTATTT 59.219 50.000 6.77 0.00 36.52 1.40
360 476 1.000521 TCCAAAGGGGATGCTGCTG 60.001 57.895 0.00 0.00 42.15 4.41
362 478 2.363406 AAAGGGGATGCTGCTGCC 60.363 61.111 13.47 1.77 38.71 4.85
375 495 1.552337 CTGCTGCCCTAGTGAGAAAGA 59.448 52.381 0.00 0.00 0.00 2.52
384 504 4.098044 CCCTAGTGAGAAAGAACGCAGATA 59.902 45.833 0.00 0.00 0.00 1.98
394 514 6.536941 AGAAAGAACGCAGATATTTCTTCTCC 59.463 38.462 0.90 0.00 36.98 3.71
409 530 4.215109 TCTTCTCCTTTTCCTTTTGGGTG 58.785 43.478 0.00 0.00 40.87 4.61
412 533 3.142028 TCTCCTTTTCCTTTTGGGTGGAT 59.858 43.478 0.00 0.00 40.87 3.41
433 554 5.227184 GGATAAAATCACGCAAATTGACGAC 59.773 40.000 14.50 0.00 0.00 4.34
454 575 0.184451 GATCCACCCCACATGCATCT 59.816 55.000 0.00 0.00 0.00 2.90
465 586 4.345837 CCCACATGCATCTTAATCCCATTT 59.654 41.667 0.00 0.00 0.00 2.32
500 621 3.322541 TGTACCAAATTCAGACCGTCAGA 59.677 43.478 0.40 0.00 0.00 3.27
508 629 3.644884 TCAGACCGTCAGAAAAGAGAC 57.355 47.619 0.40 0.00 0.00 3.36
578 699 0.393077 ACGTCCAACAACTCCAGGAG 59.607 55.000 15.72 15.72 35.52 3.69
702 2834 1.964933 GAGGAGATAGCTACACCACCC 59.035 57.143 0.00 0.00 0.00 4.61
715 2847 4.308458 CACCCGGTGACCGCTGAA 62.308 66.667 20.39 0.00 46.86 3.02
734 2867 2.755836 ATGATTATTCAACGGCACGC 57.244 45.000 0.00 0.00 45.78 5.34
767 2901 3.603365 GCCCACATGCCAGTTACC 58.397 61.111 0.00 0.00 0.00 2.85
772 2906 1.089481 CACATGCCAGTTACCGCGAT 61.089 55.000 8.23 0.00 0.00 4.58
810 2944 4.038883 ACGTATACTATTCCACCTTCTGCC 59.961 45.833 0.56 0.00 0.00 4.85
820 2954 0.846693 ACCTTCTGCCCTTGTGTCTT 59.153 50.000 0.00 0.00 0.00 3.01
821 2955 1.215423 ACCTTCTGCCCTTGTGTCTTT 59.785 47.619 0.00 0.00 0.00 2.52
822 2956 1.610522 CCTTCTGCCCTTGTGTCTTTG 59.389 52.381 0.00 0.00 0.00 2.77
823 2957 1.610522 CTTCTGCCCTTGTGTCTTTGG 59.389 52.381 0.00 0.00 0.00 3.28
824 2958 0.823356 TCTGCCCTTGTGTCTTTGGC 60.823 55.000 0.00 0.00 42.49 4.52
825 2959 0.825010 CTGCCCTTGTGTCTTTGGCT 60.825 55.000 0.00 0.00 42.62 4.75
826 2960 0.823356 TGCCCTTGTGTCTTTGGCTC 60.823 55.000 0.00 0.00 42.62 4.70
827 2961 0.538287 GCCCTTGTGTCTTTGGCTCT 60.538 55.000 0.00 0.00 39.05 4.09
847 2981 4.039092 GCTGAGCTGAAGCCCCCA 62.039 66.667 6.72 0.00 43.38 4.96
848 2982 2.759114 CTGAGCTGAAGCCCCCAA 59.241 61.111 0.00 0.00 43.38 4.12
852 2986 1.228675 AGCTGAAGCCCCCAACTTG 60.229 57.895 0.00 0.00 43.38 3.16
856 2990 0.754957 TGAAGCCCCCAACTTGTGTG 60.755 55.000 0.00 0.00 0.00 3.82
1130 3272 0.533755 GGTACGTCTAGCTCGCCCTA 60.534 60.000 0.00 0.00 0.00 3.53
1132 3274 1.672881 GTACGTCTAGCTCGCCCTAAA 59.327 52.381 0.00 0.00 0.00 1.85
1154 3298 0.592637 TCTTGCGCACAGACCATTTG 59.407 50.000 11.12 0.00 0.00 2.32
1177 3321 3.750130 GCTGGATCTGTTGCATATGGTAG 59.250 47.826 4.56 0.00 0.00 3.18
1601 3745 2.028420 TCATCAACTTCGGCATCCTG 57.972 50.000 0.00 0.00 0.00 3.86
1799 3943 2.027625 CAAGACTTCCGACACGCCC 61.028 63.158 0.00 0.00 0.00 6.13
2111 4276 3.948719 GTCGGGGCCACCAAGACA 61.949 66.667 4.39 0.00 42.15 3.41
2580 4771 4.742201 TGAGCTCGCTGTTCGGCC 62.742 66.667 9.64 0.00 39.05 6.13
2667 4858 2.992817 AATGGCCGCCACCAACTGAA 62.993 55.000 16.16 0.00 44.65 3.02
2852 5043 7.067008 ACGTTAATGGCTTCTTAAATGTGCTAT 59.933 33.333 0.00 0.00 0.00 2.97
2853 5044 8.556194 CGTTAATGGCTTCTTAAATGTGCTATA 58.444 33.333 0.00 0.00 0.00 1.31
2870 5061 7.519843 TGTGCTATAAGTTTAATTTTTCGCGA 58.480 30.769 3.71 3.71 0.00 5.87
2876 5067 5.509605 AGTTTAATTTTTCGCGATTTGGC 57.490 34.783 10.88 0.00 0.00 4.52
2877 5068 5.227152 AGTTTAATTTTTCGCGATTTGGCT 58.773 33.333 10.88 0.00 0.00 4.75
2878 5069 5.344933 AGTTTAATTTTTCGCGATTTGGCTC 59.655 36.000 10.88 0.00 0.00 4.70
2894 5085 1.632948 GCTCGTTTTGTCCGGGTAGC 61.633 60.000 0.00 0.00 0.00 3.58
2895 5086 0.320073 CTCGTTTTGTCCGGGTAGCA 60.320 55.000 0.00 0.00 0.00 3.49
2896 5087 0.320073 TCGTTTTGTCCGGGTAGCAG 60.320 55.000 0.00 0.00 0.00 4.24
2897 5088 1.296056 CGTTTTGTCCGGGTAGCAGG 61.296 60.000 0.00 4.55 0.00 4.85
2898 5089 1.302993 TTTTGTCCGGGTAGCAGGC 60.303 57.895 6.19 2.71 0.00 4.85
2899 5090 1.774894 TTTTGTCCGGGTAGCAGGCT 61.775 55.000 6.19 0.00 0.00 4.58
2912 5103 1.078918 CAGGCTGTGAGCAATCCGA 60.079 57.895 6.28 0.00 44.75 4.55
2975 5170 5.247084 ACTGTAGTAGACTGTAGAGGTGTG 58.753 45.833 0.00 0.00 38.36 3.82
2978 5173 1.477295 GTAGACTGTAGAGGTGTGCCC 59.523 57.143 0.00 0.00 34.57 5.36
3004 5201 1.886861 CTTCCGTGGCGTTTGTCTCG 61.887 60.000 0.00 0.00 36.52 4.04
3007 5204 1.611592 CCGTGGCGTTTGTCTCGTAC 61.612 60.000 0.00 0.00 35.09 3.67
3100 5297 0.248417 CTGCCGATCGAGTGAGTCAG 60.248 60.000 18.66 7.39 0.00 3.51
3155 5353 9.731819 ACTATCAGTATGTGTATTGTAAAGACG 57.268 33.333 0.00 0.00 36.10 4.18
3160 5358 4.339872 TGTGTATTGTAAAGACGTGGGT 57.660 40.909 0.00 0.00 41.90 4.51
3162 5360 4.060205 GTGTATTGTAAAGACGTGGGTGT 58.940 43.478 0.00 0.00 41.90 4.16
3163 5361 5.221402 TGTGTATTGTAAAGACGTGGGTGTA 60.221 40.000 0.00 0.00 41.90 2.90
3164 5362 5.119125 GTGTATTGTAAAGACGTGGGTGTAC 59.881 44.000 0.00 0.00 41.90 2.90
3165 5363 3.815856 TTGTAAAGACGTGGGTGTACA 57.184 42.857 0.00 0.00 0.00 2.90
3231 5431 5.412526 TTCATGTGTCCTCGTTACAAAAC 57.587 39.130 0.00 0.00 0.00 2.43
3309 5509 7.486232 GGAATCGGAATCTTGAAATCTTGAAAC 59.514 37.037 0.00 0.00 0.00 2.78
3366 5572 1.233019 TACTGGTATAGCGCTCGACC 58.767 55.000 26.31 26.31 0.00 4.79
3373 5579 2.337749 ATAGCGCTCGACCGGTTGAG 62.338 60.000 37.79 37.79 42.66 3.02
3503 5709 6.904954 ACGATAATTTACGCAGTTTGTTTG 57.095 33.333 0.00 0.00 37.78 2.93
3538 5744 2.027325 CCATGTGATGATGCACGGG 58.973 57.895 0.00 0.00 41.63 5.28
3570 5776 6.101650 TCGATAGCTGTGATGGATTTATGT 57.898 37.500 0.00 0.00 0.00 2.29
3571 5777 6.524734 TCGATAGCTGTGATGGATTTATGTT 58.475 36.000 0.00 0.00 0.00 2.71
3572 5778 6.992123 TCGATAGCTGTGATGGATTTATGTTT 59.008 34.615 0.00 0.00 0.00 2.83
3632 5838 0.900421 GTAGTTACGGGGAGCACCTT 59.100 55.000 0.00 0.00 40.03 3.50
3635 5841 1.144298 AGTTACGGGGAGCACCTTTTT 59.856 47.619 0.00 0.00 40.03 1.94
3656 5862 6.622833 TTTTTCTTTGAGGGTTAGTTACGG 57.377 37.500 0.00 0.00 0.00 4.02
3657 5863 3.967332 TCTTTGAGGGTTAGTTACGGG 57.033 47.619 0.00 0.00 0.00 5.28
3658 5864 2.568509 TCTTTGAGGGTTAGTTACGGGG 59.431 50.000 0.00 0.00 0.00 5.73
3659 5865 2.323999 TTGAGGGTTAGTTACGGGGA 57.676 50.000 0.00 0.00 0.00 4.81
3660 5866 1.856629 TGAGGGTTAGTTACGGGGAG 58.143 55.000 0.00 0.00 0.00 4.30
3661 5867 0.463204 GAGGGTTAGTTACGGGGAGC 59.537 60.000 0.00 0.00 0.00 4.70
3662 5868 0.252375 AGGGTTAGTTACGGGGAGCA 60.252 55.000 0.00 0.00 0.00 4.26
3663 5869 0.107993 GGGTTAGTTACGGGGAGCAC 60.108 60.000 0.00 0.00 0.00 4.40
3664 5870 0.107993 GGTTAGTTACGGGGAGCACC 60.108 60.000 0.00 0.00 39.11 5.01
3665 5871 0.900421 GTTAGTTACGGGGAGCACCT 59.100 55.000 0.00 0.00 40.03 4.00
3666 5872 2.102578 GTTAGTTACGGGGAGCACCTA 58.897 52.381 0.00 0.00 40.03 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.995803 GCCCCTTCCTCCTTCTTCTT 59.004 55.000 0.00 0.00 0.00 2.52
70 71 0.611896 ACCCGGCTCAATTTTCAGGG 60.612 55.000 0.00 5.42 42.82 4.45
76 77 2.307686 TCCTAGAAACCCGGCTCAATTT 59.692 45.455 0.00 0.00 0.00 1.82
77 78 1.913419 TCCTAGAAACCCGGCTCAATT 59.087 47.619 0.00 0.00 0.00 2.32
78 79 1.580059 TCCTAGAAACCCGGCTCAAT 58.420 50.000 0.00 0.00 0.00 2.57
79 80 1.278127 CTTCCTAGAAACCCGGCTCAA 59.722 52.381 0.00 0.00 0.00 3.02
80 81 0.902531 CTTCCTAGAAACCCGGCTCA 59.097 55.000 0.00 0.00 0.00 4.26
81 82 0.462225 GCTTCCTAGAAACCCGGCTC 60.462 60.000 0.00 0.00 0.00 4.70
82 83 0.910088 AGCTTCCTAGAAACCCGGCT 60.910 55.000 0.00 0.00 0.00 5.52
83 84 0.035343 AAGCTTCCTAGAAACCCGGC 60.035 55.000 0.00 0.00 0.00 6.13
84 85 3.118371 ACATAAGCTTCCTAGAAACCCGG 60.118 47.826 0.00 0.00 0.00 5.73
85 86 4.138487 ACATAAGCTTCCTAGAAACCCG 57.862 45.455 0.00 0.00 0.00 5.28
86 87 7.415318 GCTTTTACATAAGCTTCCTAGAAACCC 60.415 40.741 0.00 0.00 45.50 4.11
87 88 7.473366 GCTTTTACATAAGCTTCCTAGAAACC 58.527 38.462 0.00 0.00 45.50 3.27
88 89 7.148457 ACGCTTTTACATAAGCTTCCTAGAAAC 60.148 37.037 0.00 0.00 46.50 2.78
89 90 6.877322 ACGCTTTTACATAAGCTTCCTAGAAA 59.123 34.615 0.00 0.00 46.50 2.52
90 91 6.403878 ACGCTTTTACATAAGCTTCCTAGAA 58.596 36.000 0.00 0.00 46.50 2.10
91 92 5.974108 ACGCTTTTACATAAGCTTCCTAGA 58.026 37.500 0.00 0.00 46.50 2.43
92 93 6.663944 AACGCTTTTACATAAGCTTCCTAG 57.336 37.500 0.00 0.00 46.50 3.02
93 94 6.622028 GCAAACGCTTTTACATAAGCTTCCTA 60.622 38.462 0.00 0.00 46.50 2.94
94 95 5.699839 CAAACGCTTTTACATAAGCTTCCT 58.300 37.500 0.00 0.00 46.50 3.36
95 96 4.323602 GCAAACGCTTTTACATAAGCTTCC 59.676 41.667 0.00 0.00 46.50 3.46
96 97 4.915085 TGCAAACGCTTTTACATAAGCTTC 59.085 37.500 0.00 0.00 46.50 3.86
97 98 4.865776 TGCAAACGCTTTTACATAAGCTT 58.134 34.783 3.48 3.48 46.50 3.74
98 99 4.497473 TGCAAACGCTTTTACATAAGCT 57.503 36.364 6.77 0.00 46.50 3.74
99 100 5.220209 GGATTGCAAACGCTTTTACATAAGC 60.220 40.000 1.71 0.00 45.50 3.09
100 101 6.092748 AGGATTGCAAACGCTTTTACATAAG 58.907 36.000 1.71 0.00 0.00 1.73
101 102 6.019779 AGGATTGCAAACGCTTTTACATAA 57.980 33.333 1.71 0.00 0.00 1.90
102 103 5.637006 AGGATTGCAAACGCTTTTACATA 57.363 34.783 1.71 0.00 0.00 2.29
103 104 4.519540 AGGATTGCAAACGCTTTTACAT 57.480 36.364 1.71 0.00 0.00 2.29
104 105 5.636837 GATAGGATTGCAAACGCTTTTACA 58.363 37.500 1.71 0.00 0.00 2.41
105 106 4.728608 CGATAGGATTGCAAACGCTTTTAC 59.271 41.667 1.71 0.00 0.00 2.01
106 107 4.632251 TCGATAGGATTGCAAACGCTTTTA 59.368 37.500 1.71 0.00 0.00 1.52
112 113 5.907197 ATACTTCGATAGGATTGCAAACG 57.093 39.130 1.71 3.40 0.00 3.60
240 355 2.547913 TGCTTGCATTTCATACGCAG 57.452 45.000 0.00 0.00 36.91 5.18
241 356 2.799871 CATGCTTGCATTTCATACGCA 58.200 42.857 5.24 0.00 0.00 5.24
254 369 1.170442 TCACCACTCATGCATGCTTG 58.830 50.000 23.82 23.82 0.00 4.01
255 370 1.913778 TTCACCACTCATGCATGCTT 58.086 45.000 22.25 10.16 0.00 3.91
256 371 1.816835 CTTTCACCACTCATGCATGCT 59.183 47.619 22.25 6.35 0.00 3.79
257 372 1.542915 ACTTTCACCACTCATGCATGC 59.457 47.619 22.25 11.82 0.00 4.06
258 373 2.094906 CCACTTTCACCACTCATGCATG 60.095 50.000 21.07 21.07 0.00 4.06
259 374 2.165167 CCACTTTCACCACTCATGCAT 58.835 47.619 0.00 0.00 0.00 3.96
260 375 1.608055 CCACTTTCACCACTCATGCA 58.392 50.000 0.00 0.00 0.00 3.96
261 376 0.242017 GCCACTTTCACCACTCATGC 59.758 55.000 0.00 0.00 0.00 4.06
262 377 0.518636 CGCCACTTTCACCACTCATG 59.481 55.000 0.00 0.00 0.00 3.07
263 378 1.237285 GCGCCACTTTCACCACTCAT 61.237 55.000 0.00 0.00 0.00 2.90
264 379 1.891919 GCGCCACTTTCACCACTCA 60.892 57.895 0.00 0.00 0.00 3.41
265 380 0.320421 TAGCGCCACTTTCACCACTC 60.320 55.000 2.29 0.00 0.00 3.51
266 381 0.602905 GTAGCGCCACTTTCACCACT 60.603 55.000 2.29 0.00 0.00 4.00
267 382 0.882927 TGTAGCGCCACTTTCACCAC 60.883 55.000 7.64 0.00 0.00 4.16
268 383 0.179043 TTGTAGCGCCACTTTCACCA 60.179 50.000 7.64 0.00 0.00 4.17
269 384 0.517316 CTTGTAGCGCCACTTTCACC 59.483 55.000 7.64 0.00 0.00 4.02
270 385 1.194772 GACTTGTAGCGCCACTTTCAC 59.805 52.381 7.64 0.00 0.00 3.18
271 386 1.070134 AGACTTGTAGCGCCACTTTCA 59.930 47.619 7.64 0.00 0.00 2.69
272 387 1.797025 AGACTTGTAGCGCCACTTTC 58.203 50.000 7.64 1.00 0.00 2.62
273 388 2.256117 AAGACTTGTAGCGCCACTTT 57.744 45.000 7.64 0.00 0.00 2.66
274 389 1.873591 CAAAGACTTGTAGCGCCACTT 59.126 47.619 7.64 0.00 0.00 3.16
275 390 1.202651 ACAAAGACTTGTAGCGCCACT 60.203 47.619 7.64 0.00 44.14 4.00
276 391 1.226746 ACAAAGACTTGTAGCGCCAC 58.773 50.000 2.29 0.00 44.14 5.01
277 392 2.409975 GTACAAAGACTTGTAGCGCCA 58.590 47.619 2.29 0.00 46.28 5.69
278 393 1.389106 CGTACAAAGACTTGTAGCGCC 59.611 52.381 2.29 0.00 46.28 6.53
279 394 1.389106 CCGTACAAAGACTTGTAGCGC 59.611 52.381 0.00 0.00 46.28 5.92
280 395 2.669364 ACCGTACAAAGACTTGTAGCG 58.331 47.619 0.00 5.79 46.28 4.26
281 396 3.120782 CGAACCGTACAAAGACTTGTAGC 59.879 47.826 0.00 0.00 46.28 3.58
282 397 3.120782 GCGAACCGTACAAAGACTTGTAG 59.879 47.826 0.00 0.00 46.28 2.74
283 398 3.052036 GCGAACCGTACAAAGACTTGTA 58.948 45.455 0.00 0.00 44.14 2.41
285 400 2.132762 AGCGAACCGTACAAAGACTTG 58.867 47.619 0.00 0.00 38.61 3.16
286 401 2.521105 AGCGAACCGTACAAAGACTT 57.479 45.000 0.00 0.00 0.00 3.01
287 402 2.521105 AAGCGAACCGTACAAAGACT 57.479 45.000 0.00 0.00 0.00 3.24
288 403 2.409371 CGAAAGCGAACCGTACAAAGAC 60.409 50.000 0.00 0.00 40.82 3.01
289 404 1.788308 CGAAAGCGAACCGTACAAAGA 59.212 47.619 0.00 0.00 40.82 2.52
290 405 1.788308 TCGAAAGCGAACCGTACAAAG 59.212 47.619 0.00 0.00 44.78 2.77
291 406 1.850377 TCGAAAGCGAACCGTACAAA 58.150 45.000 0.00 0.00 44.78 2.83
292 407 3.566273 TCGAAAGCGAACCGTACAA 57.434 47.368 0.00 0.00 44.78 2.41
301 416 3.771160 GGCCTCCCTCGAAAGCGA 61.771 66.667 0.00 0.00 45.71 4.93
302 417 3.316573 AAGGCCTCCCTCGAAAGCG 62.317 63.158 5.23 0.00 41.90 4.68
303 418 1.450491 GAAGGCCTCCCTCGAAAGC 60.450 63.158 5.23 0.00 41.90 3.51
304 419 0.176910 GAGAAGGCCTCCCTCGAAAG 59.823 60.000 5.23 0.00 41.90 2.62
305 420 2.287829 GAGAAGGCCTCCCTCGAAA 58.712 57.895 5.23 0.00 41.90 3.46
306 421 4.035843 GAGAAGGCCTCCCTCGAA 57.964 61.111 5.23 0.00 41.90 3.71
313 428 2.110753 ATAGAAGGGGAGAAGGCCTC 57.889 55.000 5.23 0.00 41.22 4.70
314 429 2.511637 CAAATAGAAGGGGAGAAGGCCT 59.488 50.000 0.00 0.00 0.00 5.19
315 430 2.937519 CAAATAGAAGGGGAGAAGGCC 58.062 52.381 0.00 0.00 0.00 5.19
316 431 2.302260 GCAAATAGAAGGGGAGAAGGC 58.698 52.381 0.00 0.00 0.00 4.35
317 432 2.423517 GGGCAAATAGAAGGGGAGAAGG 60.424 54.545 0.00 0.00 0.00 3.46
318 433 2.511637 AGGGCAAATAGAAGGGGAGAAG 59.488 50.000 0.00 0.00 0.00 2.85
319 434 2.573463 AGGGCAAATAGAAGGGGAGAA 58.427 47.619 0.00 0.00 0.00 2.87
320 435 2.286935 AGGGCAAATAGAAGGGGAGA 57.713 50.000 0.00 0.00 0.00 3.71
321 436 4.507512 GGATTAGGGCAAATAGAAGGGGAG 60.508 50.000 0.00 0.00 0.00 4.30
322 437 3.397955 GGATTAGGGCAAATAGAAGGGGA 59.602 47.826 0.00 0.00 0.00 4.81
323 438 3.140144 TGGATTAGGGCAAATAGAAGGGG 59.860 47.826 0.00 0.00 0.00 4.79
324 439 4.453480 TGGATTAGGGCAAATAGAAGGG 57.547 45.455 0.00 0.00 0.00 3.95
360 476 1.337823 TGCGTTCTTTCTCACTAGGGC 60.338 52.381 0.00 0.00 0.00 5.19
362 478 3.577649 TCTGCGTTCTTTCTCACTAGG 57.422 47.619 0.00 0.00 0.00 3.02
375 495 6.094186 GGAAAAGGAGAAGAAATATCTGCGTT 59.906 38.462 0.00 0.00 39.89 4.84
384 504 5.905331 ACCCAAAAGGAAAAGGAGAAGAAAT 59.095 36.000 0.00 0.00 39.89 2.17
394 514 7.387673 GTGATTTTATCCACCCAAAAGGAAAAG 59.612 37.037 0.00 0.00 39.89 2.27
409 530 5.227184 GTCGTCAATTTGCGTGATTTTATCC 59.773 40.000 11.18 0.00 0.00 2.59
412 533 5.050023 TCAGTCGTCAATTTGCGTGATTTTA 60.050 36.000 11.18 0.00 0.00 1.52
424 545 1.065418 GGGGTGGATCAGTCGTCAATT 60.065 52.381 0.00 0.00 0.00 2.32
433 554 0.106369 ATGCATGTGGGGTGGATCAG 60.106 55.000 0.00 0.00 0.00 2.90
500 621 3.503363 TGAAATGCTGCATCGTCTCTTTT 59.497 39.130 16.55 4.41 0.00 2.27
508 629 0.384309 ATGGCTGAAATGCTGCATCG 59.616 50.000 16.55 6.24 42.62 3.84
702 2834 3.059597 GAATAATCATTCAGCGGTCACCG 60.060 47.826 13.48 13.48 43.75 4.94
714 2846 2.682856 AGCGTGCCGTTGAATAATCATT 59.317 40.909 0.00 0.00 34.96 2.57
715 2847 2.288666 AGCGTGCCGTTGAATAATCAT 58.711 42.857 0.00 0.00 34.96 2.45
734 2867 2.345760 GGCCCACAGCATGACCAAG 61.346 63.158 0.00 0.00 46.50 3.61
802 2936 1.610522 CAAAGACACAAGGGCAGAAGG 59.389 52.381 0.00 0.00 0.00 3.46
810 2944 2.149578 CTCAGAGCCAAAGACACAAGG 58.850 52.381 0.00 0.00 0.00 3.61
824 2958 0.460635 GGCTTCAGCTCAGCTCAGAG 60.461 60.000 13.06 0.00 36.40 3.35
825 2959 1.595882 GGCTTCAGCTCAGCTCAGA 59.404 57.895 13.06 0.00 36.40 3.27
826 2960 1.449956 GGGCTTCAGCTCAGCTCAG 60.450 63.158 13.06 0.00 42.27 3.35
827 2961 2.667418 GGGCTTCAGCTCAGCTCA 59.333 61.111 13.06 0.00 42.27 4.26
847 2981 7.138736 GCATTTATAGACACAACACACAAGTT 58.861 34.615 0.00 0.00 0.00 2.66
848 2982 6.565811 CGCATTTATAGACACAACACACAAGT 60.566 38.462 0.00 0.00 0.00 3.16
852 2986 5.277601 ACGCATTTATAGACACAACACAC 57.722 39.130 0.00 0.00 0.00 3.82
856 2990 4.189231 AGGGACGCATTTATAGACACAAC 58.811 43.478 0.00 0.00 0.00 3.32
888 3030 2.591429 TGCCAGTGGAGTGTTGCG 60.591 61.111 15.20 0.00 0.00 4.85
1121 3263 0.448197 GCAAGAACTTTAGGGCGAGC 59.552 55.000 0.00 0.00 0.00 5.03
1122 3264 0.721718 CGCAAGAACTTTAGGGCGAG 59.278 55.000 10.07 0.00 46.65 5.03
1154 3298 1.884579 CCATATGCAACAGATCCAGCC 59.115 52.381 0.00 0.00 0.00 4.85
1247 3391 1.138883 GATGTACAGCGACGCTCCA 59.861 57.895 21.67 16.87 36.40 3.86
1505 3649 1.008194 GTACACGGGCGCGATCATA 60.008 57.895 30.98 12.53 0.00 2.15
1601 3745 4.468643 CGAAGTTAGAGACATATCCGAGC 58.531 47.826 0.00 0.00 0.00 5.03
2111 4276 0.842030 TGGCCACCAGGATGAAGACT 60.842 55.000 0.00 0.00 39.69 3.24
2333 4524 0.541063 TCTCCGAGCTGTACACCCAA 60.541 55.000 0.00 0.00 0.00 4.12
2580 4771 4.312231 CTTGTGCGTGGCCGTGTG 62.312 66.667 0.00 0.00 36.15 3.82
2667 4858 2.680913 GCGATCTGCCAACTTGCGT 61.681 57.895 0.00 0.00 37.76 5.24
2852 5043 6.864165 AGCCAAATCGCGAAAAATTAAACTTA 59.136 30.769 15.24 0.00 0.00 2.24
2853 5044 5.694458 AGCCAAATCGCGAAAAATTAAACTT 59.306 32.000 15.24 0.00 0.00 2.66
2862 5053 0.589223 AACGAGCCAAATCGCGAAAA 59.411 45.000 15.24 0.00 46.60 2.29
2870 5061 0.596082 CCGGACAAAACGAGCCAAAT 59.404 50.000 0.00 0.00 0.00 2.32
2875 5066 1.632948 GCTACCCGGACAAAACGAGC 61.633 60.000 0.73 0.00 0.00 5.03
2876 5067 0.320073 TGCTACCCGGACAAAACGAG 60.320 55.000 0.73 0.00 0.00 4.18
2877 5068 0.320073 CTGCTACCCGGACAAAACGA 60.320 55.000 0.73 0.00 0.00 3.85
2878 5069 1.296056 CCTGCTACCCGGACAAAACG 61.296 60.000 0.73 0.00 0.00 3.60
2894 5085 1.078918 TCGGATTGCTCACAGCCTG 60.079 57.895 0.00 0.00 41.51 4.85
2895 5086 1.078848 GTCGGATTGCTCACAGCCT 60.079 57.895 0.00 0.00 41.51 4.58
2896 5087 1.364626 CTGTCGGATTGCTCACAGCC 61.365 60.000 0.00 0.00 41.51 4.85
2897 5088 0.671781 ACTGTCGGATTGCTCACAGC 60.672 55.000 0.00 0.00 40.01 4.40
2898 5089 1.073964 CACTGTCGGATTGCTCACAG 58.926 55.000 0.00 0.00 41.77 3.66
2899 5090 0.950555 GCACTGTCGGATTGCTCACA 60.951 55.000 2.90 0.00 33.26 3.58
2912 5103 3.781760 CCTTGGCATTGGCACTGT 58.218 55.556 13.07 0.00 43.71 3.55
2975 5170 2.646117 GCCACGGAAGTAGCTAGGGC 62.646 65.000 0.00 0.00 45.45 5.19
2978 5173 0.172803 AACGCCACGGAAGTAGCTAG 59.827 55.000 0.00 0.00 46.74 3.42
3004 5201 3.264897 CCCATGCAGCGCGAGTAC 61.265 66.667 12.10 0.00 0.00 2.73
3100 5297 2.332654 ACATTTTCCGTGGCTCGCC 61.333 57.895 2.96 0.00 38.35 5.54
3130 5327 9.731819 ACGTCTTTACAATACACATACTGATAG 57.268 33.333 0.00 0.00 0.00 2.08
3134 5331 6.035650 CCCACGTCTTTACAATACACATACTG 59.964 42.308 0.00 0.00 0.00 2.74
3162 5360 3.193903 TGCTGCCTGAAAGTACGTATGTA 59.806 43.478 0.00 0.00 0.00 2.29
3163 5361 2.028476 TGCTGCCTGAAAGTACGTATGT 60.028 45.455 0.00 0.00 0.00 2.29
3164 5362 2.348666 GTGCTGCCTGAAAGTACGTATG 59.651 50.000 0.00 0.00 0.00 2.39
3165 5363 2.618053 GTGCTGCCTGAAAGTACGTAT 58.382 47.619 0.00 0.00 0.00 3.06
3366 5572 2.514013 GGATACGCACGCTCAACCG 61.514 63.158 0.00 0.00 0.00 4.44
3373 5579 0.935366 GACTAGCTGGATACGCACGC 60.935 60.000 3.17 0.00 38.34 5.34
3374 5580 0.380733 TGACTAGCTGGATACGCACG 59.619 55.000 3.17 0.00 38.34 5.34
3375 5581 2.579207 TTGACTAGCTGGATACGCAC 57.421 50.000 3.17 0.00 38.34 5.34
3376 5582 3.259064 GTTTTGACTAGCTGGATACGCA 58.741 45.455 3.17 0.00 38.34 5.24
3538 5744 2.666508 TCACAGCTATCGAAAACGAAGC 59.333 45.455 0.00 0.00 0.00 3.86
3601 5807 4.498241 CCCGTAACTACTTCCCTTAACAC 58.502 47.826 0.00 0.00 0.00 3.32
3635 5841 4.505390 CCCCGTAACTAACCCTCAAAGAAA 60.505 45.833 0.00 0.00 0.00 2.52
3636 5842 3.008266 CCCCGTAACTAACCCTCAAAGAA 59.992 47.826 0.00 0.00 0.00 2.52
3637 5843 2.568509 CCCCGTAACTAACCCTCAAAGA 59.431 50.000 0.00 0.00 0.00 2.52
3638 5844 2.568509 TCCCCGTAACTAACCCTCAAAG 59.431 50.000 0.00 0.00 0.00 2.77
3639 5845 2.568509 CTCCCCGTAACTAACCCTCAAA 59.431 50.000 0.00 0.00 0.00 2.69
3640 5846 2.181975 CTCCCCGTAACTAACCCTCAA 58.818 52.381 0.00 0.00 0.00 3.02
3641 5847 1.856629 CTCCCCGTAACTAACCCTCA 58.143 55.000 0.00 0.00 0.00 3.86
3642 5848 0.463204 GCTCCCCGTAACTAACCCTC 59.537 60.000 0.00 0.00 0.00 4.30
3643 5849 0.252375 TGCTCCCCGTAACTAACCCT 60.252 55.000 0.00 0.00 0.00 4.34
3644 5850 0.107993 GTGCTCCCCGTAACTAACCC 60.108 60.000 0.00 0.00 0.00 4.11
3645 5851 0.107993 GGTGCTCCCCGTAACTAACC 60.108 60.000 0.00 0.00 0.00 2.85
3646 5852 0.900421 AGGTGCTCCCCGTAACTAAC 59.100 55.000 0.00 0.00 0.00 2.34
3647 5853 2.530460 TAGGTGCTCCCCGTAACTAA 57.470 50.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.