Multiple sequence alignment - TraesCS2A01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G188000 chr2A 100.000 4684 0 0 1 4684 150918626 150913943 0.000000e+00 8650
1 TraesCS2A01G188000 chr2A 87.736 106 12 1 4580 4684 362434654 362434759 6.360000e-24 122
2 TraesCS2A01G188000 chr2D 94.258 2351 76 23 2364 4684 150627600 150629921 0.000000e+00 3539
3 TraesCS2A01G188000 chr2D 95.196 2019 56 15 375 2375 150625442 150627437 0.000000e+00 3153
4 TraesCS2A01G188000 chr2D 87.736 106 12 1 4580 4684 295154949 295155054 6.360000e-24 122
5 TraesCS2A01G188000 chr2B 95.203 2022 79 9 2571 4582 209251824 209253837 0.000000e+00 3181
6 TraesCS2A01G188000 chr2B 94.356 1825 55 23 728 2529 209250023 209251822 0.000000e+00 2756
7 TraesCS2A01G188000 chr2B 92.308 130 4 3 419 547 209249544 209249668 3.720000e-41 180
8 TraesCS2A01G188000 chr7B 92.632 95 7 0 4590 4684 162120812 162120906 2.270000e-28 137
9 TraesCS2A01G188000 chr7A 91.579 95 8 0 4590 4684 563817171 563817077 1.060000e-26 132
10 TraesCS2A01G188000 chr7A 89.623 106 8 3 4579 4684 622369595 622369493 1.060000e-26 132
11 TraesCS2A01G188000 chr3D 90.816 98 9 0 4586 4683 608238809 608238712 1.060000e-26 132
12 TraesCS2A01G188000 chr4A 91.579 95 7 1 4590 4684 37060112 37060205 3.800000e-26 130
13 TraesCS2A01G188000 chr3A 90.526 95 9 0 4590 4684 470095778 470095684 4.920000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G188000 chr2A 150913943 150918626 4683 True 8650 8650 100.000000 1 4684 1 chr2A.!!$R1 4683
1 TraesCS2A01G188000 chr2D 150625442 150629921 4479 False 3346 3539 94.727000 375 4684 2 chr2D.!!$F2 4309
2 TraesCS2A01G188000 chr2B 209249544 209253837 4293 False 2039 3181 93.955667 419 4582 3 chr2B.!!$F1 4163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.032952 GCACAAGTACACGGGTGAGA 59.967 55.000 0.00 0.0 33.16 3.27 F
364 365 0.036671 AGTGCCCTTTGCCGTAGTAC 60.037 55.000 0.00 0.0 40.16 2.73 F
1223 1415 0.110644 CTGACGCGCTCCTGTTTTTC 60.111 55.000 5.73 0.0 0.00 2.29 F
1518 1710 1.228245 TGGCCTTGTTCTGTGGCTC 60.228 57.895 3.32 0.0 45.45 4.70 F
2611 3007 1.505425 AAACTGAACGCTAACGGGAC 58.495 50.000 0.00 0.0 46.04 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1751 0.107508 ACCACCGGAATCATGCTCAG 60.108 55.000 9.46 0.0 0.00 3.35 R
1597 1789 1.069636 GTGTAGTGCTTGCTGTTGAGC 60.070 52.381 0.00 0.0 46.44 4.26 R
3046 3443 3.753272 GTGTTGTTACAGCTCCATGACAT 59.247 43.478 0.34 0.0 34.24 3.06 R
3347 3748 1.242076 ACTGGCTCATGTTGCAGAAC 58.758 50.000 13.49 0.0 0.00 3.01 R
4227 4644 0.034089 AGGATACCCTTGCCAGTTGC 60.034 55.000 0.00 0.0 40.78 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.093966 ACATTTGCGGATGTGGCA 57.906 50.000 4.18 0.00 38.75 4.92
23 24 1.793258 TTGCGGATGTGGCAATTTTG 58.207 45.000 0.00 0.00 44.79 2.44
24 25 0.037512 TGCGGATGTGGCAATTTTGG 60.038 50.000 0.00 0.00 37.49 3.28
25 26 0.037419 GCGGATGTGGCAATTTTGGT 60.037 50.000 0.00 0.00 0.00 3.67
26 27 1.607767 GCGGATGTGGCAATTTTGGTT 60.608 47.619 0.00 0.00 0.00 3.67
27 28 2.067766 CGGATGTGGCAATTTTGGTTG 58.932 47.619 0.00 0.00 0.00 3.77
37 38 4.735662 CAATTTTGGTTGCATGAGGTTG 57.264 40.909 0.00 0.00 0.00 3.77
38 39 4.378774 CAATTTTGGTTGCATGAGGTTGA 58.621 39.130 0.00 0.00 0.00 3.18
39 40 3.451141 TTTTGGTTGCATGAGGTTGAC 57.549 42.857 0.00 0.00 0.00 3.18
40 41 0.950836 TTGGTTGCATGAGGTTGACG 59.049 50.000 0.00 0.00 0.00 4.35
41 42 0.888736 TGGTTGCATGAGGTTGACGG 60.889 55.000 0.00 0.00 0.00 4.79
42 43 0.889186 GGTTGCATGAGGTTGACGGT 60.889 55.000 0.00 0.00 0.00 4.83
43 44 0.951558 GTTGCATGAGGTTGACGGTT 59.048 50.000 0.00 0.00 0.00 4.44
44 45 1.336755 GTTGCATGAGGTTGACGGTTT 59.663 47.619 0.00 0.00 0.00 3.27
45 46 1.234821 TGCATGAGGTTGACGGTTTC 58.765 50.000 0.00 0.00 0.00 2.78
46 47 1.202758 TGCATGAGGTTGACGGTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
47 48 1.880027 GCATGAGGTTGACGGTTTCTT 59.120 47.619 0.00 0.00 0.00 2.52
48 49 2.095718 GCATGAGGTTGACGGTTTCTTC 60.096 50.000 0.00 0.00 0.00 2.87
49 50 2.992124 TGAGGTTGACGGTTTCTTCA 57.008 45.000 0.00 0.00 0.00 3.02
50 51 3.485463 TGAGGTTGACGGTTTCTTCAT 57.515 42.857 0.00 0.00 0.00 2.57
51 52 4.610605 TGAGGTTGACGGTTTCTTCATA 57.389 40.909 0.00 0.00 0.00 2.15
52 53 4.963373 TGAGGTTGACGGTTTCTTCATAA 58.037 39.130 0.00 0.00 0.00 1.90
53 54 5.369833 TGAGGTTGACGGTTTCTTCATAAA 58.630 37.500 0.00 0.00 0.00 1.40
54 55 5.237779 TGAGGTTGACGGTTTCTTCATAAAC 59.762 40.000 0.00 0.00 38.39 2.01
55 56 4.212636 AGGTTGACGGTTTCTTCATAAACG 59.787 41.667 0.00 0.00 39.71 3.60
56 57 3.799137 TGACGGTTTCTTCATAAACGC 57.201 42.857 0.00 0.00 39.71 4.84
57 58 3.132160 TGACGGTTTCTTCATAAACGCA 58.868 40.909 0.00 0.00 39.71 5.24
58 59 3.749088 TGACGGTTTCTTCATAAACGCAT 59.251 39.130 0.00 0.00 39.71 4.73
59 60 4.078363 ACGGTTTCTTCATAAACGCATG 57.922 40.909 0.00 0.00 39.71 4.06
60 61 3.749088 ACGGTTTCTTCATAAACGCATGA 59.251 39.130 0.00 0.00 39.71 3.07
61 62 4.088648 CGGTTTCTTCATAAACGCATGAC 58.911 43.478 0.00 0.00 39.71 3.06
62 63 4.377943 CGGTTTCTTCATAAACGCATGACA 60.378 41.667 0.00 0.00 39.71 3.58
63 64 4.851558 GGTTTCTTCATAAACGCATGACAC 59.148 41.667 0.00 0.00 39.71 3.67
64 65 5.334879 GGTTTCTTCATAAACGCATGACACT 60.335 40.000 0.00 0.00 39.71 3.55
65 66 6.128391 GGTTTCTTCATAAACGCATGACACTA 60.128 38.462 0.00 0.00 39.71 2.74
66 67 7.414098 GGTTTCTTCATAAACGCATGACACTAT 60.414 37.037 0.00 0.00 39.71 2.12
67 68 7.609760 TTCTTCATAAACGCATGACACTATT 57.390 32.000 0.00 0.00 34.69 1.73
68 69 7.609760 TCTTCATAAACGCATGACACTATTT 57.390 32.000 0.00 0.00 34.69 1.40
69 70 8.710835 TCTTCATAAACGCATGACACTATTTA 57.289 30.769 0.00 0.00 34.69 1.40
70 71 9.157104 TCTTCATAAACGCATGACACTATTTAA 57.843 29.630 0.00 0.00 34.69 1.52
71 72 9.425893 CTTCATAAACGCATGACACTATTTAAG 57.574 33.333 0.00 0.00 34.69 1.85
72 73 8.710835 TCATAAACGCATGACACTATTTAAGA 57.289 30.769 0.00 0.00 29.93 2.10
73 74 8.817100 TCATAAACGCATGACACTATTTAAGAG 58.183 33.333 0.00 0.00 29.93 2.85
74 75 8.817100 CATAAACGCATGACACTATTTAAGAGA 58.183 33.333 0.00 0.00 0.00 3.10
75 76 7.667043 AAACGCATGACACTATTTAAGAGAA 57.333 32.000 0.00 0.00 0.00 2.87
76 77 6.893958 ACGCATGACACTATTTAAGAGAAG 57.106 37.500 0.00 0.00 0.00 2.85
77 78 6.631016 ACGCATGACACTATTTAAGAGAAGA 58.369 36.000 0.00 0.00 0.00 2.87
78 79 6.754209 ACGCATGACACTATTTAAGAGAAGAG 59.246 38.462 0.00 0.00 0.00 2.85
79 80 6.975197 CGCATGACACTATTTAAGAGAAGAGA 59.025 38.462 0.00 0.00 0.00 3.10
80 81 7.489435 CGCATGACACTATTTAAGAGAAGAGAA 59.511 37.037 0.00 0.00 0.00 2.87
81 82 9.155975 GCATGACACTATTTAAGAGAAGAGAAA 57.844 33.333 0.00 0.00 0.00 2.52
91 92 7.581213 TTAAGAGAAGAGAAATTTTGTGGCA 57.419 32.000 0.00 0.00 0.00 4.92
92 93 6.469782 AAGAGAAGAGAAATTTTGTGGCAA 57.530 33.333 0.00 0.00 0.00 4.52
93 94 6.469782 AGAGAAGAGAAATTTTGTGGCAAA 57.530 33.333 0.00 0.00 0.00 3.68
94 95 6.877236 AGAGAAGAGAAATTTTGTGGCAAAA 58.123 32.000 9.09 9.09 0.00 2.44
95 96 7.330262 AGAGAAGAGAAATTTTGTGGCAAAAA 58.670 30.769 10.46 0.00 33.76 1.94
112 113 3.339253 AAAAATGCAGGATTTGGCCTC 57.661 42.857 3.32 0.00 35.66 4.70
113 114 2.242882 AAATGCAGGATTTGGCCTCT 57.757 45.000 3.32 0.00 35.66 3.69
114 115 1.772836 AATGCAGGATTTGGCCTCTC 58.227 50.000 3.32 0.00 35.66 3.20
115 116 0.106318 ATGCAGGATTTGGCCTCTCC 60.106 55.000 3.32 7.54 35.66 3.71
116 117 1.210204 TGCAGGATTTGGCCTCTCCT 61.210 55.000 13.61 13.61 40.05 3.69
117 118 0.033699 GCAGGATTTGGCCTCTCCTT 60.034 55.000 15.97 2.97 37.30 3.36
118 119 1.618074 GCAGGATTTGGCCTCTCCTTT 60.618 52.381 15.97 0.00 37.30 3.11
119 120 2.812658 CAGGATTTGGCCTCTCCTTTT 58.187 47.619 15.97 0.00 37.30 2.27
120 121 3.168292 CAGGATTTGGCCTCTCCTTTTT 58.832 45.455 15.97 0.00 37.30 1.94
121 122 3.194329 CAGGATTTGGCCTCTCCTTTTTC 59.806 47.826 15.97 0.00 37.30 2.29
122 123 3.076634 AGGATTTGGCCTCTCCTTTTTCT 59.923 43.478 13.61 0.00 35.90 2.52
123 124 3.834813 GGATTTGGCCTCTCCTTTTTCTT 59.165 43.478 3.32 0.00 35.26 2.52
124 125 5.016831 GGATTTGGCCTCTCCTTTTTCTTA 58.983 41.667 3.32 0.00 35.26 2.10
125 126 5.126222 GGATTTGGCCTCTCCTTTTTCTTAG 59.874 44.000 3.32 0.00 35.26 2.18
126 127 3.721087 TGGCCTCTCCTTTTTCTTAGG 57.279 47.619 3.32 0.00 35.26 2.69
127 128 2.308866 TGGCCTCTCCTTTTTCTTAGGG 59.691 50.000 3.32 0.00 35.26 3.53
128 129 2.576648 GGCCTCTCCTTTTTCTTAGGGA 59.423 50.000 0.00 0.00 33.41 4.20
129 130 3.010250 GGCCTCTCCTTTTTCTTAGGGAA 59.990 47.826 0.00 0.00 33.41 3.97
130 131 4.265893 GCCTCTCCTTTTTCTTAGGGAAG 58.734 47.826 0.00 0.00 35.16 3.46
131 132 4.849518 CCTCTCCTTTTTCTTAGGGAAGG 58.150 47.826 0.00 0.00 39.97 3.46
132 133 4.536489 CCTCTCCTTTTTCTTAGGGAAGGA 59.464 45.833 9.98 9.98 43.91 3.36
133 134 5.192722 CCTCTCCTTTTTCTTAGGGAAGGAT 59.807 44.000 10.55 0.00 44.73 3.24
134 135 6.314899 TCTCCTTTTTCTTAGGGAAGGATC 57.685 41.667 10.55 0.00 44.73 3.36
135 136 6.032693 TCTCCTTTTTCTTAGGGAAGGATCT 58.967 40.000 10.55 0.00 44.73 2.75
136 137 6.067217 TCCTTTTTCTTAGGGAAGGATCTG 57.933 41.667 7.45 0.00 41.91 2.90
137 138 4.642437 CCTTTTTCTTAGGGAAGGATCTGC 59.358 45.833 0.00 0.00 40.86 4.26
138 139 3.933861 TTTCTTAGGGAAGGATCTGCC 57.066 47.619 0.00 0.00 35.16 4.85
139 140 2.568546 TCTTAGGGAAGGATCTGCCA 57.431 50.000 0.00 0.00 40.02 4.92
140 141 3.066208 TCTTAGGGAAGGATCTGCCAT 57.934 47.619 0.00 0.00 40.02 4.40
141 142 2.975489 TCTTAGGGAAGGATCTGCCATC 59.025 50.000 0.00 0.00 40.02 3.51
142 143 2.803285 TAGGGAAGGATCTGCCATCT 57.197 50.000 0.00 0.00 40.02 2.90
143 144 1.433121 AGGGAAGGATCTGCCATCTC 58.567 55.000 0.00 0.00 40.02 2.75
144 145 0.399833 GGGAAGGATCTGCCATCTCC 59.600 60.000 0.00 0.00 40.02 3.71
145 146 1.135094 GGAAGGATCTGCCATCTCCA 58.865 55.000 0.00 0.00 40.02 3.86
146 147 1.492176 GGAAGGATCTGCCATCTCCAA 59.508 52.381 0.00 0.00 40.02 3.53
147 148 2.570135 GAAGGATCTGCCATCTCCAAC 58.430 52.381 0.00 0.00 40.02 3.77
148 149 1.890552 AGGATCTGCCATCTCCAACT 58.109 50.000 0.00 0.00 40.02 3.16
149 150 3.051940 AGGATCTGCCATCTCCAACTA 57.948 47.619 0.00 0.00 40.02 2.24
150 151 2.971330 AGGATCTGCCATCTCCAACTAG 59.029 50.000 0.00 0.00 40.02 2.57
151 152 2.038295 GGATCTGCCATCTCCAACTAGG 59.962 54.545 0.00 0.00 36.34 3.02
152 153 2.254152 TCTGCCATCTCCAACTAGGT 57.746 50.000 0.00 0.00 39.02 3.08
153 154 3.398318 TCTGCCATCTCCAACTAGGTA 57.602 47.619 0.00 0.00 39.02 3.08
154 155 3.719871 TCTGCCATCTCCAACTAGGTAA 58.280 45.455 0.00 0.00 39.02 2.85
155 156 3.706594 TCTGCCATCTCCAACTAGGTAAG 59.293 47.826 0.00 0.00 39.02 2.34
156 157 3.450904 TGCCATCTCCAACTAGGTAAGT 58.549 45.455 0.00 0.00 41.49 2.24
186 187 4.525912 AAAGACATTTGCTTGTCATCCC 57.474 40.909 14.51 0.00 46.81 3.85
187 188 3.446442 AGACATTTGCTTGTCATCCCT 57.554 42.857 14.51 0.00 46.81 4.20
188 189 3.771216 AGACATTTGCTTGTCATCCCTT 58.229 40.909 14.51 0.00 46.81 3.95
189 190 4.154942 AGACATTTGCTTGTCATCCCTTT 58.845 39.130 14.51 0.00 46.81 3.11
190 191 4.590222 AGACATTTGCTTGTCATCCCTTTT 59.410 37.500 14.51 0.00 46.81 2.27
191 192 4.886579 ACATTTGCTTGTCATCCCTTTTC 58.113 39.130 0.00 0.00 0.00 2.29
192 193 4.344679 ACATTTGCTTGTCATCCCTTTTCA 59.655 37.500 0.00 0.00 0.00 2.69
193 194 4.589216 TTTGCTTGTCATCCCTTTTCAG 57.411 40.909 0.00 0.00 0.00 3.02
194 195 1.888512 TGCTTGTCATCCCTTTTCAGC 59.111 47.619 0.00 0.00 0.00 4.26
195 196 2.165998 GCTTGTCATCCCTTTTCAGCT 58.834 47.619 0.00 0.00 0.00 4.24
196 197 3.244875 TGCTTGTCATCCCTTTTCAGCTA 60.245 43.478 0.00 0.00 0.00 3.32
197 198 3.758554 GCTTGTCATCCCTTTTCAGCTAA 59.241 43.478 0.00 0.00 0.00 3.09
198 199 4.379918 GCTTGTCATCCCTTTTCAGCTAAC 60.380 45.833 0.00 0.00 0.00 2.34
199 200 3.334691 TGTCATCCCTTTTCAGCTAACG 58.665 45.455 0.00 0.00 0.00 3.18
200 201 3.244422 TGTCATCCCTTTTCAGCTAACGT 60.244 43.478 0.00 0.00 0.00 3.99
201 202 3.751698 GTCATCCCTTTTCAGCTAACGTT 59.248 43.478 5.88 5.88 0.00 3.99
202 203 4.000988 TCATCCCTTTTCAGCTAACGTTC 58.999 43.478 2.82 0.00 0.00 3.95
203 204 2.409975 TCCCTTTTCAGCTAACGTTCG 58.590 47.619 2.82 0.00 0.00 3.95
204 205 2.140717 CCCTTTTCAGCTAACGTTCGT 58.859 47.619 2.82 0.00 0.00 3.85
205 206 2.157085 CCCTTTTCAGCTAACGTTCGTC 59.843 50.000 2.82 0.00 0.00 4.20
206 207 2.798283 CCTTTTCAGCTAACGTTCGTCA 59.202 45.455 2.82 0.00 0.00 4.35
207 208 3.120991 CCTTTTCAGCTAACGTTCGTCAG 60.121 47.826 2.82 0.00 0.00 3.51
208 209 2.787601 TTCAGCTAACGTTCGTCAGT 57.212 45.000 2.82 0.00 0.00 3.41
209 210 2.787601 TCAGCTAACGTTCGTCAGTT 57.212 45.000 2.82 0.00 0.00 3.16
210 211 3.902261 TCAGCTAACGTTCGTCAGTTA 57.098 42.857 2.82 0.00 0.00 2.24
211 212 4.430137 TCAGCTAACGTTCGTCAGTTAT 57.570 40.909 2.82 0.00 33.09 1.89
212 213 4.409570 TCAGCTAACGTTCGTCAGTTATC 58.590 43.478 2.82 0.00 33.09 1.75
213 214 4.083164 TCAGCTAACGTTCGTCAGTTATCA 60.083 41.667 2.82 0.00 33.09 2.15
214 215 4.798907 CAGCTAACGTTCGTCAGTTATCAT 59.201 41.667 2.82 0.00 33.09 2.45
215 216 5.288712 CAGCTAACGTTCGTCAGTTATCATT 59.711 40.000 2.82 0.00 33.09 2.57
216 217 6.471198 CAGCTAACGTTCGTCAGTTATCATTA 59.529 38.462 2.82 0.00 33.09 1.90
217 218 7.167635 CAGCTAACGTTCGTCAGTTATCATTAT 59.832 37.037 2.82 0.00 33.09 1.28
218 219 7.378995 AGCTAACGTTCGTCAGTTATCATTATC 59.621 37.037 2.82 0.00 33.09 1.75
219 220 6.492286 AACGTTCGTCAGTTATCATTATCG 57.508 37.500 0.00 0.00 0.00 2.92
220 221 5.575957 ACGTTCGTCAGTTATCATTATCGT 58.424 37.500 0.00 0.00 0.00 3.73
221 222 6.718388 ACGTTCGTCAGTTATCATTATCGTA 58.282 36.000 0.00 0.00 0.00 3.43
222 223 7.188834 ACGTTCGTCAGTTATCATTATCGTAA 58.811 34.615 0.00 0.00 0.00 3.18
223 224 7.859377 ACGTTCGTCAGTTATCATTATCGTAAT 59.141 33.333 0.00 0.00 0.00 1.89
224 225 9.321590 CGTTCGTCAGTTATCATTATCGTAATA 57.678 33.333 0.00 0.00 0.00 0.98
254 255 9.150028 TCCCTATTATAGTATTGCACAAGTACA 57.850 33.333 0.00 0.00 0.00 2.90
255 256 9.204570 CCCTATTATAGTATTGCACAAGTACAC 57.795 37.037 0.00 0.00 0.00 2.90
256 257 8.912658 CCTATTATAGTATTGCACAAGTACACG 58.087 37.037 0.00 0.00 0.00 4.49
257 258 7.709269 ATTATAGTATTGCACAAGTACACGG 57.291 36.000 0.00 0.00 0.00 4.94
258 259 2.695359 AGTATTGCACAAGTACACGGG 58.305 47.619 0.00 0.00 0.00 5.28
259 260 2.038033 AGTATTGCACAAGTACACGGGT 59.962 45.455 0.00 0.00 0.00 5.28
260 261 1.234821 ATTGCACAAGTACACGGGTG 58.765 50.000 0.00 0.00 0.00 4.61
261 262 0.178301 TTGCACAAGTACACGGGTGA 59.822 50.000 0.00 0.00 33.16 4.02
262 263 0.249699 TGCACAAGTACACGGGTGAG 60.250 55.000 0.00 0.00 33.16 3.51
263 264 0.032952 GCACAAGTACACGGGTGAGA 59.967 55.000 0.00 0.00 33.16 3.27
264 265 1.539496 GCACAAGTACACGGGTGAGAA 60.539 52.381 0.00 0.00 33.16 2.87
265 266 2.828877 CACAAGTACACGGGTGAGAAA 58.171 47.619 0.00 0.00 33.16 2.52
266 267 3.199677 CACAAGTACACGGGTGAGAAAA 58.800 45.455 0.00 0.00 33.16 2.29
267 268 3.001939 CACAAGTACACGGGTGAGAAAAC 59.998 47.826 0.00 0.00 33.16 2.43
268 269 3.199677 CAAGTACACGGGTGAGAAAACA 58.800 45.455 0.00 0.00 0.00 2.83
269 270 3.547054 AGTACACGGGTGAGAAAACAA 57.453 42.857 0.00 0.00 0.00 2.83
270 271 3.200483 AGTACACGGGTGAGAAAACAAC 58.800 45.455 0.00 0.00 0.00 3.32
271 272 2.116827 ACACGGGTGAGAAAACAACA 57.883 45.000 5.71 0.00 0.00 3.33
272 273 2.014128 ACACGGGTGAGAAAACAACAG 58.986 47.619 5.71 0.00 0.00 3.16
273 274 2.014128 CACGGGTGAGAAAACAACAGT 58.986 47.619 0.00 0.00 36.45 3.55
274 275 2.014128 ACGGGTGAGAAAACAACAGTG 58.986 47.619 0.00 0.00 34.94 3.66
275 276 2.285083 CGGGTGAGAAAACAACAGTGA 58.715 47.619 0.00 0.00 0.00 3.41
276 277 2.680841 CGGGTGAGAAAACAACAGTGAA 59.319 45.455 0.00 0.00 0.00 3.18
277 278 3.486875 CGGGTGAGAAAACAACAGTGAAC 60.487 47.826 0.00 0.00 0.00 3.18
278 279 3.694566 GGGTGAGAAAACAACAGTGAACT 59.305 43.478 0.00 0.00 0.00 3.01
279 280 4.879545 GGGTGAGAAAACAACAGTGAACTA 59.120 41.667 0.00 0.00 0.00 2.24
280 281 5.220796 GGGTGAGAAAACAACAGTGAACTAC 60.221 44.000 0.00 0.00 0.00 2.73
281 282 5.353123 GGTGAGAAAACAACAGTGAACTACA 59.647 40.000 0.00 0.00 0.00 2.74
299 300 4.606071 CACAGGGAGTGCTAGCAC 57.394 61.111 35.56 35.56 46.50 4.40
318 319 6.944234 AGCACTAGCACTTTTTCTTAAACT 57.056 33.333 0.00 0.00 45.49 2.66
319 320 9.204570 CTAGCACTAGCACTTTTTCTTAAACTA 57.795 33.333 0.00 0.00 45.49 2.24
320 321 8.089115 AGCACTAGCACTTTTTCTTAAACTAG 57.911 34.615 0.00 0.00 45.49 2.57
321 322 7.715686 AGCACTAGCACTTTTTCTTAAACTAGT 59.284 33.333 0.00 0.00 45.49 2.57
322 323 8.985805 GCACTAGCACTTTTTCTTAAACTAGTA 58.014 33.333 0.00 0.00 37.56 1.82
348 349 9.355215 ACTAATTACGAACTAAACTGATGAGTG 57.645 33.333 0.00 0.00 30.61 3.51
349 350 6.648725 ATTACGAACTAAACTGATGAGTGC 57.351 37.500 0.00 0.00 30.61 4.40
350 351 3.326747 ACGAACTAAACTGATGAGTGCC 58.673 45.455 0.00 0.00 30.61 5.01
351 352 2.673368 CGAACTAAACTGATGAGTGCCC 59.327 50.000 0.00 0.00 30.61 5.36
352 353 3.617531 CGAACTAAACTGATGAGTGCCCT 60.618 47.826 0.00 0.00 30.61 5.19
353 354 4.327680 GAACTAAACTGATGAGTGCCCTT 58.672 43.478 0.00 0.00 30.61 3.95
354 355 4.373156 ACTAAACTGATGAGTGCCCTTT 57.627 40.909 0.00 0.00 30.61 3.11
355 356 4.074970 ACTAAACTGATGAGTGCCCTTTG 58.925 43.478 0.00 0.00 30.61 2.77
356 357 1.251251 AACTGATGAGTGCCCTTTGC 58.749 50.000 0.00 0.00 41.77 3.68
357 358 0.610232 ACTGATGAGTGCCCTTTGCC 60.610 55.000 0.00 0.00 40.16 4.52
358 359 1.651240 CTGATGAGTGCCCTTTGCCG 61.651 60.000 0.00 0.00 40.16 5.69
359 360 1.675641 GATGAGTGCCCTTTGCCGT 60.676 57.895 0.00 0.00 40.16 5.68
360 361 0.392461 GATGAGTGCCCTTTGCCGTA 60.392 55.000 0.00 0.00 40.16 4.02
361 362 0.392998 ATGAGTGCCCTTTGCCGTAG 60.393 55.000 0.00 0.00 40.16 3.51
362 363 1.003718 GAGTGCCCTTTGCCGTAGT 60.004 57.895 0.00 0.00 40.16 2.73
363 364 0.248289 GAGTGCCCTTTGCCGTAGTA 59.752 55.000 0.00 0.00 40.16 1.82
364 365 0.036671 AGTGCCCTTTGCCGTAGTAC 60.037 55.000 0.00 0.00 40.16 2.73
365 366 0.036671 GTGCCCTTTGCCGTAGTACT 60.037 55.000 0.00 0.00 40.16 2.73
366 367 1.205417 GTGCCCTTTGCCGTAGTACTA 59.795 52.381 0.00 0.00 40.16 1.82
367 368 1.901159 TGCCCTTTGCCGTAGTACTAA 59.099 47.619 3.61 0.00 40.16 2.24
368 369 2.502538 TGCCCTTTGCCGTAGTACTAAT 59.497 45.455 3.61 0.00 40.16 1.73
369 370 2.870411 GCCCTTTGCCGTAGTACTAATG 59.130 50.000 3.61 0.20 0.00 1.90
370 371 3.680754 GCCCTTTGCCGTAGTACTAATGT 60.681 47.826 3.61 0.00 0.00 2.71
371 372 3.869246 CCCTTTGCCGTAGTACTAATGTG 59.131 47.826 3.61 0.00 0.00 3.21
372 373 4.501071 CCTTTGCCGTAGTACTAATGTGT 58.499 43.478 3.61 0.00 0.00 3.72
373 374 4.933400 CCTTTGCCGTAGTACTAATGTGTT 59.067 41.667 3.61 0.00 0.00 3.32
377 378 5.401550 TGCCGTAGTACTAATGTGTTGTAC 58.598 41.667 3.61 0.00 37.42 2.90
390 391 0.746659 GTTGTACTACGGCGGGGTAT 59.253 55.000 13.24 0.00 0.00 2.73
562 564 0.975887 GAAAAAGGGCAGGCCATCAA 59.024 50.000 16.94 0.00 37.98 2.57
569 571 1.549203 GGCAGGCCATCAAAAGAGAA 58.451 50.000 5.01 0.00 35.81 2.87
570 572 1.475682 GGCAGGCCATCAAAAGAGAAG 59.524 52.381 5.01 0.00 35.81 2.85
571 573 2.440409 GCAGGCCATCAAAAGAGAAGA 58.560 47.619 5.01 0.00 0.00 2.87
572 574 2.422832 GCAGGCCATCAAAAGAGAAGAG 59.577 50.000 5.01 0.00 0.00 2.85
647 649 4.179599 CCTCCCTCCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
648 650 4.179599 CTCCCTCCCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
674 676 2.087009 CCGTTCGTTGGCTCGTCTC 61.087 63.158 3.16 0.00 0.00 3.36
675 677 2.426183 CGTTCGTTGGCTCGTCTCG 61.426 63.158 3.16 0.00 0.00 4.04
676 678 1.371389 GTTCGTTGGCTCGTCTCGT 60.371 57.895 3.16 0.00 0.00 4.18
677 679 1.081641 TTCGTTGGCTCGTCTCGTC 60.082 57.895 3.16 0.00 0.00 4.20
678 680 1.512996 TTCGTTGGCTCGTCTCGTCT 61.513 55.000 3.16 0.00 0.00 4.18
694 696 1.477295 CGTCTCTCTTCTTACCCACCC 59.523 57.143 0.00 0.00 0.00 4.61
695 697 2.537143 GTCTCTCTTCTTACCCACCCA 58.463 52.381 0.00 0.00 0.00 4.51
696 698 2.234168 GTCTCTCTTCTTACCCACCCAC 59.766 54.545 0.00 0.00 0.00 4.61
700 702 0.249398 CTTCTTACCCACCCACCTCG 59.751 60.000 0.00 0.00 0.00 4.63
702 704 3.324108 TTACCCACCCACCTCGCC 61.324 66.667 0.00 0.00 0.00 5.54
848 1033 1.681486 CTTCTTCTCGCCTCCCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
1223 1415 0.110644 CTGACGCGCTCCTGTTTTTC 60.111 55.000 5.73 0.00 0.00 2.29
1232 1424 3.001168 CGCTCCTGTTTTTCGTTTGTTTG 60.001 43.478 0.00 0.00 0.00 2.93
1447 1639 5.221130 GTCGGCTTCTATCAGGTATAACAC 58.779 45.833 0.00 0.00 0.00 3.32
1453 1645 6.292381 GCTTCTATCAGGTATAACACGCTTTG 60.292 42.308 0.00 0.00 0.00 2.77
1518 1710 1.228245 TGGCCTTGTTCTGTGGCTC 60.228 57.895 3.32 0.00 45.45 4.70
1527 1719 1.940613 GTTCTGTGGCTCAAGAACGTT 59.059 47.619 0.00 0.00 32.69 3.99
1559 1751 5.643379 TGCCAATTTACAGATCTCCAAAC 57.357 39.130 0.00 0.00 0.00 2.93
1597 1789 2.354003 GGTTTGCTTGATGGAATGGGTG 60.354 50.000 0.00 0.00 0.00 4.61
1903 2098 7.554835 ACTTTCACAATAGTTGGAAGTTGTACA 59.445 33.333 0.00 0.00 33.79 2.90
1928 2123 6.405538 ACCAATGATGATAACGCCAATTTTT 58.594 32.000 0.00 0.00 0.00 1.94
2033 2228 4.151883 ACATAGGTGCTTTGGTGAAACAT 58.848 39.130 0.00 0.00 39.98 2.71
2067 2262 2.294512 GCCAAATATTCAGTAGCTGGGC 59.705 50.000 0.00 0.00 31.51 5.36
2391 2771 4.379394 GCTGCGGATTTACAGTTGAATTCA 60.379 41.667 3.38 3.38 36.26 2.57
2392 2772 5.697473 TGCGGATTTACAGTTGAATTCAA 57.303 34.783 16.91 16.91 0.00 2.69
2556 2936 6.539173 TGTAGCCTTGAAGTTTTGGAAGATA 58.461 36.000 0.00 0.00 0.00 1.98
2557 2937 6.655003 TGTAGCCTTGAAGTTTTGGAAGATAG 59.345 38.462 0.00 0.00 0.00 2.08
2611 3007 1.505425 AAACTGAACGCTAACGGGAC 58.495 50.000 0.00 0.00 46.04 4.46
2946 3343 6.914259 TGTATCTTCTGCTATAGATTCGTGG 58.086 40.000 3.21 0.00 34.80 4.94
2999 3396 4.018050 ACATTTCCCATTCCTCTACTGCTT 60.018 41.667 0.00 0.00 0.00 3.91
3008 3405 2.584031 TCCTCTACTGCTTAGTACCCCA 59.416 50.000 0.00 0.00 0.00 4.96
3046 3443 8.137745 AGCAATTTCCTTTTCCAATTCATCTA 57.862 30.769 0.00 0.00 0.00 1.98
3126 3527 3.000727 ACATCCTTCTTAAGAAACGCGG 58.999 45.455 18.25 15.26 33.07 6.46
3147 3548 7.972277 ACGCGGAATTTATATTATATGACTCGT 59.028 33.333 12.47 0.00 0.00 4.18
3160 3561 2.907634 TGACTCGTGGTTTGCTGTTAA 58.092 42.857 0.00 0.00 0.00 2.01
3239 3640 4.604843 TTTAATCATCACGCAGCTCTTG 57.395 40.909 0.00 0.00 0.00 3.02
3259 3660 4.070630 TGGTGCTGCTTTTAATGCTTTT 57.929 36.364 0.00 0.00 0.00 2.27
3263 3664 4.746611 GTGCTGCTTTTAATGCTTTTGTCT 59.253 37.500 0.00 0.00 0.00 3.41
3265 3666 4.984161 GCTGCTTTTAATGCTTTTGTCTGA 59.016 37.500 4.54 0.00 0.00 3.27
3277 3678 4.627035 GCTTTTGTCTGAAAACAGCTTGTT 59.373 37.500 10.71 0.00 43.41 2.83
3300 3701 2.977914 TGCTCTAACAATCTCCTGTGC 58.022 47.619 0.00 0.00 0.00 4.57
3301 3702 2.284190 GCTCTAACAATCTCCTGTGCC 58.716 52.381 0.00 0.00 0.00 5.01
3311 3712 2.517959 TCTCCTGTGCCAATCCTTTTG 58.482 47.619 0.00 0.00 0.00 2.44
3347 3748 1.201647 CTTTCATGCTCCTTGGCTGTG 59.798 52.381 0.00 0.00 0.00 3.66
3500 3901 0.833287 ACATACTCGGGATGCTGCTT 59.167 50.000 0.00 0.00 0.00 3.91
3673 4074 3.839432 CCTCGAGGAAGGCCCGAC 61.839 72.222 28.21 0.00 40.87 4.79
3761 4162 2.997315 CCGCCAGTCCAGTCCTCA 60.997 66.667 0.00 0.00 0.00 3.86
3801 4202 2.128290 AATTTTGCCCCTTGCCTGCC 62.128 55.000 0.00 0.00 40.16 4.85
4005 4414 1.315257 GCATCCCGGTGAATGCTTGT 61.315 55.000 20.47 0.00 37.10 3.16
4006 4415 0.734889 CATCCCGGTGAATGCTTGTC 59.265 55.000 0.00 0.00 0.00 3.18
4061 4470 2.332654 GGCAATCGTGGCTTCCGTT 61.333 57.895 0.00 0.00 46.62 4.44
4073 4482 1.009829 CTTCCGTTAGCACCATGAGC 58.990 55.000 0.00 0.00 0.00 4.26
4225 4642 0.984230 TGAGGAAAGCCGGAATCAGT 59.016 50.000 5.05 0.00 39.96 3.41
4226 4643 1.339055 TGAGGAAAGCCGGAATCAGTG 60.339 52.381 5.05 0.00 39.96 3.66
4227 4644 0.035056 AGGAAAGCCGGAATCAGTGG 60.035 55.000 5.05 0.00 39.96 4.00
4302 4719 0.313987 TTCTCGAGTGCGTCATGTGT 59.686 50.000 13.13 0.00 38.98 3.72
4344 4761 3.673809 CGAACTAGAAAGGGAACAACTCG 59.326 47.826 0.00 0.00 0.00 4.18
4410 4827 1.784525 AAAAGTCTCAGCGAGGAACG 58.215 50.000 5.87 0.00 45.66 3.95
4426 4843 2.959707 GGAACGTAGATCATCTGGTCCT 59.040 50.000 0.00 0.00 0.00 3.85
4432 4850 4.022762 CGTAGATCATCTGGTCCTCGAAAT 60.023 45.833 0.00 0.00 0.00 2.17
4442 4860 2.418197 GGTCCTCGAAATCGTTGGATGA 60.418 50.000 17.65 1.27 41.62 2.92
4467 4885 5.943416 CCAATCATACTGTTCCAAAGTACCA 59.057 40.000 0.00 0.00 33.11 3.25
4468 4886 6.432783 CCAATCATACTGTTCCAAAGTACCAA 59.567 38.462 0.00 0.00 33.11 3.67
4495 4915 0.613012 GTCAAGGAATGCAAGCCCCT 60.613 55.000 4.71 0.00 0.00 4.79
4567 4989 8.752766 TGTAATCTACTACCGTTTCTCAAAAG 57.247 34.615 0.00 0.00 0.00 2.27
4575 4997 5.654603 ACCGTTTCTCAAAAGGAAAAACT 57.345 34.783 7.81 0.00 41.79 2.66
4599 5021 6.088541 AGTTGTAATCTACTACTCCCTCCA 57.911 41.667 0.00 0.00 39.90 3.86
4610 5032 6.652205 ACTACTCCCTCCAATCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
4632 5054 5.248870 AGTGTTGCAGTTTTGAACTAAGG 57.751 39.130 0.00 0.00 40.46 2.69
4681 5103 9.529325 TTACGACACTTATTATTGATCTGAAGG 57.471 33.333 0.00 0.00 0.00 3.46
4682 5104 7.782049 ACGACACTTATTATTGATCTGAAGGA 58.218 34.615 0.00 0.00 0.00 3.36
4683 5105 7.923344 ACGACACTTATTATTGATCTGAAGGAG 59.077 37.037 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.349701 TTGCCACATCCGCAAATGT 58.650 47.368 0.00 0.00 43.00 2.71
5 6 0.037512 CCAAAATTGCCACATCCGCA 60.038 50.000 0.00 0.00 0.00 5.69
6 7 0.037419 ACCAAAATTGCCACATCCGC 60.037 50.000 0.00 0.00 0.00 5.54
7 8 2.067766 CAACCAAAATTGCCACATCCG 58.932 47.619 0.00 0.00 0.00 4.18
16 17 4.211794 GTCAACCTCATGCAACCAAAATTG 59.788 41.667 0.00 0.00 0.00 2.32
17 18 4.379652 GTCAACCTCATGCAACCAAAATT 58.620 39.130 0.00 0.00 0.00 1.82
18 19 3.552684 CGTCAACCTCATGCAACCAAAAT 60.553 43.478 0.00 0.00 0.00 1.82
19 20 2.223688 CGTCAACCTCATGCAACCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
20 21 1.336440 CGTCAACCTCATGCAACCAAA 59.664 47.619 0.00 0.00 0.00 3.28
21 22 0.950836 CGTCAACCTCATGCAACCAA 59.049 50.000 0.00 0.00 0.00 3.67
22 23 0.888736 CCGTCAACCTCATGCAACCA 60.889 55.000 0.00 0.00 0.00 3.67
23 24 0.889186 ACCGTCAACCTCATGCAACC 60.889 55.000 0.00 0.00 0.00 3.77
24 25 0.951558 AACCGTCAACCTCATGCAAC 59.048 50.000 0.00 0.00 0.00 4.17
25 26 1.606668 GAAACCGTCAACCTCATGCAA 59.393 47.619 0.00 0.00 0.00 4.08
26 27 1.202758 AGAAACCGTCAACCTCATGCA 60.203 47.619 0.00 0.00 0.00 3.96
27 28 1.523758 AGAAACCGTCAACCTCATGC 58.476 50.000 0.00 0.00 0.00 4.06
28 29 3.138304 TGAAGAAACCGTCAACCTCATG 58.862 45.455 0.00 0.00 0.00 3.07
29 30 3.485463 TGAAGAAACCGTCAACCTCAT 57.515 42.857 0.00 0.00 0.00 2.90
30 31 2.992124 TGAAGAAACCGTCAACCTCA 57.008 45.000 0.00 0.00 0.00 3.86
31 32 5.614013 CGTTTATGAAGAAACCGTCAACCTC 60.614 44.000 0.00 0.00 36.18 3.85
32 33 4.212636 CGTTTATGAAGAAACCGTCAACCT 59.787 41.667 0.00 0.00 36.18 3.50
33 34 4.460505 CGTTTATGAAGAAACCGTCAACC 58.539 43.478 0.00 0.00 36.18 3.77
34 35 3.904234 GCGTTTATGAAGAAACCGTCAAC 59.096 43.478 0.00 0.00 36.18 3.18
35 36 3.560481 TGCGTTTATGAAGAAACCGTCAA 59.440 39.130 0.00 0.00 36.18 3.18
36 37 3.132160 TGCGTTTATGAAGAAACCGTCA 58.868 40.909 0.00 0.00 36.18 4.35
37 38 3.799137 TGCGTTTATGAAGAAACCGTC 57.201 42.857 0.00 0.00 36.18 4.79
38 39 3.749088 TCATGCGTTTATGAAGAAACCGT 59.251 39.130 0.00 0.00 36.18 4.83
39 40 4.088648 GTCATGCGTTTATGAAGAAACCG 58.911 43.478 0.00 0.00 38.69 4.44
40 41 4.851558 GTGTCATGCGTTTATGAAGAAACC 59.148 41.667 0.00 0.00 38.69 3.27
41 42 5.689819 AGTGTCATGCGTTTATGAAGAAAC 58.310 37.500 0.00 0.00 38.69 2.78
42 43 5.940192 AGTGTCATGCGTTTATGAAGAAA 57.060 34.783 0.00 0.00 38.69 2.52
43 44 7.609760 AATAGTGTCATGCGTTTATGAAGAA 57.390 32.000 0.00 0.00 38.69 2.52
44 45 7.609760 AAATAGTGTCATGCGTTTATGAAGA 57.390 32.000 0.00 0.00 38.69 2.87
45 46 9.425893 CTTAAATAGTGTCATGCGTTTATGAAG 57.574 33.333 0.00 0.00 38.69 3.02
46 47 9.157104 TCTTAAATAGTGTCATGCGTTTATGAA 57.843 29.630 0.00 0.00 38.69 2.57
47 48 8.710835 TCTTAAATAGTGTCATGCGTTTATGA 57.289 30.769 0.00 0.00 34.83 2.15
48 49 8.817100 TCTCTTAAATAGTGTCATGCGTTTATG 58.183 33.333 0.00 0.00 0.00 1.90
49 50 8.942338 TCTCTTAAATAGTGTCATGCGTTTAT 57.058 30.769 0.00 0.00 0.00 1.40
50 51 8.766000 TTCTCTTAAATAGTGTCATGCGTTTA 57.234 30.769 0.00 0.00 0.00 2.01
51 52 7.602644 TCTTCTCTTAAATAGTGTCATGCGTTT 59.397 33.333 0.00 0.00 0.00 3.60
52 53 7.097192 TCTTCTCTTAAATAGTGTCATGCGTT 58.903 34.615 0.00 0.00 0.00 4.84
53 54 6.631016 TCTTCTCTTAAATAGTGTCATGCGT 58.369 36.000 0.00 0.00 0.00 5.24
54 55 6.975197 TCTCTTCTCTTAAATAGTGTCATGCG 59.025 38.462 0.00 0.00 0.00 4.73
55 56 8.709386 TTCTCTTCTCTTAAATAGTGTCATGC 57.291 34.615 0.00 0.00 0.00 4.06
65 66 8.641541 TGCCACAAAATTTCTCTTCTCTTAAAT 58.358 29.630 0.00 0.00 0.00 1.40
66 67 8.006298 TGCCACAAAATTTCTCTTCTCTTAAA 57.994 30.769 0.00 0.00 0.00 1.52
67 68 7.581213 TGCCACAAAATTTCTCTTCTCTTAA 57.419 32.000 0.00 0.00 0.00 1.85
68 69 7.581213 TTGCCACAAAATTTCTCTTCTCTTA 57.419 32.000 0.00 0.00 0.00 2.10
69 70 6.469782 TTGCCACAAAATTTCTCTTCTCTT 57.530 33.333 0.00 0.00 0.00 2.85
70 71 6.469782 TTTGCCACAAAATTTCTCTTCTCT 57.530 33.333 0.00 0.00 0.00 3.10
71 72 7.538303 TTTTTGCCACAAAATTTCTCTTCTC 57.462 32.000 6.34 0.00 0.00 2.87
92 93 2.908351 AGAGGCCAAATCCTGCATTTTT 59.092 40.909 5.01 0.00 36.38 1.94
93 94 2.498885 GAGAGGCCAAATCCTGCATTTT 59.501 45.455 5.01 0.00 36.38 1.82
94 95 2.105766 GAGAGGCCAAATCCTGCATTT 58.894 47.619 5.01 0.00 36.38 2.32
95 96 1.687368 GGAGAGGCCAAATCCTGCATT 60.687 52.381 5.01 0.00 36.38 3.56
96 97 0.106318 GGAGAGGCCAAATCCTGCAT 60.106 55.000 5.01 0.00 36.38 3.96
97 98 1.210204 AGGAGAGGCCAAATCCTGCA 61.210 55.000 19.47 0.00 41.95 4.41
98 99 0.033699 AAGGAGAGGCCAAATCCTGC 60.034 55.000 20.52 8.02 42.72 4.85
99 100 2.521547 AAAGGAGAGGCCAAATCCTG 57.478 50.000 20.52 0.00 42.72 3.86
100 101 3.076634 AGAAAAAGGAGAGGCCAAATCCT 59.923 43.478 15.65 15.65 45.50 3.24
101 102 3.435275 AGAAAAAGGAGAGGCCAAATCC 58.565 45.455 5.01 9.35 40.02 3.01
102 103 5.126222 CCTAAGAAAAAGGAGAGGCCAAATC 59.874 44.000 5.01 0.00 40.02 2.17
103 104 5.019470 CCTAAGAAAAAGGAGAGGCCAAAT 58.981 41.667 5.01 0.00 40.02 2.32
104 105 4.407365 CCTAAGAAAAAGGAGAGGCCAAA 58.593 43.478 5.01 0.00 40.02 3.28
105 106 3.245264 CCCTAAGAAAAAGGAGAGGCCAA 60.245 47.826 5.01 0.00 40.02 4.52
106 107 2.308866 CCCTAAGAAAAAGGAGAGGCCA 59.691 50.000 5.01 0.00 40.02 5.36
107 108 2.576648 TCCCTAAGAAAAAGGAGAGGCC 59.423 50.000 0.00 0.00 36.08 5.19
108 109 4.265893 CTTCCCTAAGAAAAAGGAGAGGC 58.734 47.826 0.00 0.00 36.08 4.70
109 110 4.536489 TCCTTCCCTAAGAAAAAGGAGAGG 59.464 45.833 0.00 0.00 41.74 3.69
110 111 5.763876 TCCTTCCCTAAGAAAAAGGAGAG 57.236 43.478 0.00 0.00 41.74 3.20
114 115 4.642437 GCAGATCCTTCCCTAAGAAAAAGG 59.358 45.833 0.00 0.00 39.73 3.11
115 116 4.642437 GGCAGATCCTTCCCTAAGAAAAAG 59.358 45.833 0.00 0.00 34.37 2.27
116 117 4.044065 TGGCAGATCCTTCCCTAAGAAAAA 59.956 41.667 0.00 0.00 34.37 1.94
117 118 3.591527 TGGCAGATCCTTCCCTAAGAAAA 59.408 43.478 0.00 0.00 34.37 2.29
118 119 3.189606 TGGCAGATCCTTCCCTAAGAAA 58.810 45.455 0.00 0.00 34.37 2.52
119 120 2.845659 TGGCAGATCCTTCCCTAAGAA 58.154 47.619 0.00 0.00 34.37 2.52
120 121 2.568546 TGGCAGATCCTTCCCTAAGA 57.431 50.000 0.00 0.00 34.37 2.10
121 122 2.978278 AGATGGCAGATCCTTCCCTAAG 59.022 50.000 0.00 0.00 39.24 2.18
122 123 2.975489 GAGATGGCAGATCCTTCCCTAA 59.025 50.000 0.00 0.00 39.24 2.69
123 124 2.614259 GAGATGGCAGATCCTTCCCTA 58.386 52.381 0.00 0.00 39.24 3.53
124 125 1.433121 GAGATGGCAGATCCTTCCCT 58.567 55.000 0.00 0.00 39.24 4.20
125 126 0.399833 GGAGATGGCAGATCCTTCCC 59.600 60.000 12.31 0.00 39.24 3.97
126 127 1.135094 TGGAGATGGCAGATCCTTCC 58.865 55.000 18.44 6.03 39.24 3.46
127 128 2.172293 AGTTGGAGATGGCAGATCCTTC 59.828 50.000 18.44 12.34 38.84 3.46
128 129 2.203584 AGTTGGAGATGGCAGATCCTT 58.796 47.619 18.44 5.23 34.04 3.36
129 130 1.890552 AGTTGGAGATGGCAGATCCT 58.109 50.000 18.44 2.36 34.04 3.24
130 131 2.038295 CCTAGTTGGAGATGGCAGATCC 59.962 54.545 12.61 12.61 38.35 3.36
131 132 2.703007 ACCTAGTTGGAGATGGCAGATC 59.297 50.000 0.00 0.00 39.71 2.75
132 133 2.769209 ACCTAGTTGGAGATGGCAGAT 58.231 47.619 0.00 0.00 39.71 2.90
133 134 2.254152 ACCTAGTTGGAGATGGCAGA 57.746 50.000 0.00 0.00 39.71 4.26
134 135 3.452627 ACTTACCTAGTTGGAGATGGCAG 59.547 47.826 0.00 0.00 39.71 4.85
135 136 3.450904 ACTTACCTAGTTGGAGATGGCA 58.549 45.455 0.00 0.00 39.71 4.92
136 137 4.489306 AACTTACCTAGTTGGAGATGGC 57.511 45.455 0.00 0.00 45.33 4.40
169 170 4.344679 TGAAAAGGGATGACAAGCAAATGT 59.655 37.500 0.00 0.00 35.90 2.71
170 171 4.885413 TGAAAAGGGATGACAAGCAAATG 58.115 39.130 0.00 0.00 0.00 2.32
171 172 4.562143 GCTGAAAAGGGATGACAAGCAAAT 60.562 41.667 0.00 0.00 0.00 2.32
172 173 3.243839 GCTGAAAAGGGATGACAAGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
173 174 2.297033 GCTGAAAAGGGATGACAAGCAA 59.703 45.455 0.00 0.00 0.00 3.91
174 175 1.888512 GCTGAAAAGGGATGACAAGCA 59.111 47.619 0.00 0.00 0.00 3.91
175 176 2.165998 AGCTGAAAAGGGATGACAAGC 58.834 47.619 0.00 0.00 0.00 4.01
176 177 4.142816 CGTTAGCTGAAAAGGGATGACAAG 60.143 45.833 0.00 0.00 0.00 3.16
177 178 3.751175 CGTTAGCTGAAAAGGGATGACAA 59.249 43.478 0.00 0.00 0.00 3.18
178 179 3.244422 ACGTTAGCTGAAAAGGGATGACA 60.244 43.478 0.00 0.00 0.00 3.58
179 180 3.335579 ACGTTAGCTGAAAAGGGATGAC 58.664 45.455 0.00 0.00 0.00 3.06
180 181 3.695830 ACGTTAGCTGAAAAGGGATGA 57.304 42.857 0.00 0.00 0.00 2.92
181 182 3.181520 CGAACGTTAGCTGAAAAGGGATG 60.182 47.826 0.00 0.00 0.00 3.51
182 183 3.000727 CGAACGTTAGCTGAAAAGGGAT 58.999 45.455 0.00 0.00 0.00 3.85
183 184 2.224113 ACGAACGTTAGCTGAAAAGGGA 60.224 45.455 8.42 0.00 0.00 4.20
184 185 2.140717 ACGAACGTTAGCTGAAAAGGG 58.859 47.619 8.42 0.00 0.00 3.95
185 186 2.798283 TGACGAACGTTAGCTGAAAAGG 59.202 45.455 8.42 0.00 0.00 3.11
186 187 3.489785 ACTGACGAACGTTAGCTGAAAAG 59.510 43.478 16.59 0.70 35.47 2.27
187 188 3.450578 ACTGACGAACGTTAGCTGAAAA 58.549 40.909 16.59 0.00 35.47 2.29
188 189 3.088194 ACTGACGAACGTTAGCTGAAA 57.912 42.857 16.59 0.00 35.47 2.69
189 190 2.787601 ACTGACGAACGTTAGCTGAA 57.212 45.000 16.59 0.00 35.47 3.02
190 191 2.787601 AACTGACGAACGTTAGCTGA 57.212 45.000 16.59 0.00 35.47 4.26
191 192 4.163552 TGATAACTGACGAACGTTAGCTG 58.836 43.478 16.59 7.93 35.47 4.24
192 193 4.430137 TGATAACTGACGAACGTTAGCT 57.570 40.909 16.59 9.10 35.47 3.32
193 194 5.697848 AATGATAACTGACGAACGTTAGC 57.302 39.130 16.59 2.47 35.47 3.09
194 195 7.375280 ACGATAATGATAACTGACGAACGTTAG 59.625 37.037 15.43 15.43 37.68 2.34
195 196 7.188834 ACGATAATGATAACTGACGAACGTTA 58.811 34.615 0.00 0.00 0.00 3.18
196 197 6.032094 ACGATAATGATAACTGACGAACGTT 58.968 36.000 0.00 0.00 0.00 3.99
197 198 5.575957 ACGATAATGATAACTGACGAACGT 58.424 37.500 0.00 0.00 0.00 3.99
198 199 7.599054 TTACGATAATGATAACTGACGAACG 57.401 36.000 0.00 0.00 0.00 3.95
228 229 9.150028 TGTACTTGTGCAATACTATAATAGGGA 57.850 33.333 0.00 0.00 0.00 4.20
229 230 9.204570 GTGTACTTGTGCAATACTATAATAGGG 57.795 37.037 0.00 0.00 0.00 3.53
230 231 8.912658 CGTGTACTTGTGCAATACTATAATAGG 58.087 37.037 0.00 0.00 0.00 2.57
231 232 8.912658 CCGTGTACTTGTGCAATACTATAATAG 58.087 37.037 0.00 0.00 0.00 1.73
232 233 7.868922 CCCGTGTACTTGTGCAATACTATAATA 59.131 37.037 0.00 0.00 0.00 0.98
233 234 6.704493 CCCGTGTACTTGTGCAATACTATAAT 59.296 38.462 0.00 0.00 0.00 1.28
234 235 6.044046 CCCGTGTACTTGTGCAATACTATAA 58.956 40.000 0.00 0.00 0.00 0.98
235 236 5.127519 ACCCGTGTACTTGTGCAATACTATA 59.872 40.000 0.00 0.00 0.00 1.31
236 237 4.081309 ACCCGTGTACTTGTGCAATACTAT 60.081 41.667 0.00 0.00 0.00 2.12
237 238 3.258872 ACCCGTGTACTTGTGCAATACTA 59.741 43.478 0.00 0.00 0.00 1.82
238 239 2.038033 ACCCGTGTACTTGTGCAATACT 59.962 45.455 0.00 0.00 0.00 2.12
239 240 2.158841 CACCCGTGTACTTGTGCAATAC 59.841 50.000 0.00 0.00 0.00 1.89
240 241 2.037381 TCACCCGTGTACTTGTGCAATA 59.963 45.455 0.00 0.00 0.00 1.90
241 242 1.202710 TCACCCGTGTACTTGTGCAAT 60.203 47.619 0.00 0.00 0.00 3.56
242 243 0.178301 TCACCCGTGTACTTGTGCAA 59.822 50.000 0.00 0.00 0.00 4.08
243 244 0.249699 CTCACCCGTGTACTTGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
244 245 0.032952 TCTCACCCGTGTACTTGTGC 59.967 55.000 0.00 0.00 0.00 4.57
245 246 2.519377 TTCTCACCCGTGTACTTGTG 57.481 50.000 0.00 0.00 0.00 3.33
246 247 3.200483 GTTTTCTCACCCGTGTACTTGT 58.800 45.455 0.00 0.00 0.00 3.16
247 248 3.199677 TGTTTTCTCACCCGTGTACTTG 58.800 45.455 0.00 0.00 0.00 3.16
248 249 3.547054 TGTTTTCTCACCCGTGTACTT 57.453 42.857 0.00 0.00 0.00 2.24
249 250 3.200483 GTTGTTTTCTCACCCGTGTACT 58.800 45.455 0.00 0.00 0.00 2.73
250 251 2.937799 TGTTGTTTTCTCACCCGTGTAC 59.062 45.455 0.00 0.00 0.00 2.90
251 252 3.199677 CTGTTGTTTTCTCACCCGTGTA 58.800 45.455 0.00 0.00 0.00 2.90
252 253 2.014128 CTGTTGTTTTCTCACCCGTGT 58.986 47.619 0.00 0.00 0.00 4.49
253 254 2.014128 ACTGTTGTTTTCTCACCCGTG 58.986 47.619 0.00 0.00 0.00 4.94
254 255 2.014128 CACTGTTGTTTTCTCACCCGT 58.986 47.619 0.00 0.00 0.00 5.28
255 256 2.285083 TCACTGTTGTTTTCTCACCCG 58.715 47.619 0.00 0.00 0.00 5.28
256 257 3.694566 AGTTCACTGTTGTTTTCTCACCC 59.305 43.478 0.00 0.00 0.00 4.61
257 258 4.965119 AGTTCACTGTTGTTTTCTCACC 57.035 40.909 0.00 0.00 0.00 4.02
258 259 6.128391 TGTGTAGTTCACTGTTGTTTTCTCAC 60.128 38.462 1.38 0.00 46.27 3.51
259 260 5.935206 TGTGTAGTTCACTGTTGTTTTCTCA 59.065 36.000 1.38 0.00 46.27 3.27
260 261 6.128391 TGTGTGTAGTTCACTGTTGTTTTCTC 60.128 38.462 1.38 0.00 46.27 2.87
261 262 5.703592 TGTGTGTAGTTCACTGTTGTTTTCT 59.296 36.000 1.38 0.00 46.27 2.52
262 263 5.933790 TGTGTGTAGTTCACTGTTGTTTTC 58.066 37.500 1.38 0.00 46.27 2.29
263 264 5.106317 CCTGTGTGTAGTTCACTGTTGTTTT 60.106 40.000 1.38 0.00 46.27 2.43
264 265 4.394920 CCTGTGTGTAGTTCACTGTTGTTT 59.605 41.667 1.38 0.00 46.27 2.83
265 266 3.938963 CCTGTGTGTAGTTCACTGTTGTT 59.061 43.478 1.38 0.00 46.27 2.83
266 267 3.531538 CCTGTGTGTAGTTCACTGTTGT 58.468 45.455 1.38 0.00 46.27 3.32
267 268 2.872245 CCCTGTGTGTAGTTCACTGTTG 59.128 50.000 1.38 0.00 46.27 3.33
268 269 2.769663 TCCCTGTGTGTAGTTCACTGTT 59.230 45.455 1.38 0.00 46.27 3.16
269 270 2.365617 CTCCCTGTGTGTAGTTCACTGT 59.634 50.000 1.38 0.00 46.27 3.55
270 271 2.365617 ACTCCCTGTGTGTAGTTCACTG 59.634 50.000 1.38 0.00 46.27 3.66
271 272 2.365617 CACTCCCTGTGTGTAGTTCACT 59.634 50.000 1.38 0.00 46.27 3.41
272 273 2.755650 CACTCCCTGTGTGTAGTTCAC 58.244 52.381 0.00 0.00 46.31 3.18
293 294 8.089115 AGTTTAAGAAAAAGTGCTAGTGCTAG 57.911 34.615 2.04 2.04 40.48 3.42
294 295 9.204570 CTAGTTTAAGAAAAAGTGCTAGTGCTA 57.795 33.333 0.00 0.00 40.48 3.49
295 296 6.944234 AGTTTAAGAAAAAGTGCTAGTGCT 57.056 33.333 0.00 0.00 40.48 4.40
296 297 7.862648 ACTAGTTTAAGAAAAAGTGCTAGTGC 58.137 34.615 0.00 0.00 33.18 4.40
322 323 9.355215 CACTCATCAGTTTAGTTCGTAATTAGT 57.645 33.333 0.00 0.00 0.00 2.24
323 324 8.321716 GCACTCATCAGTTTAGTTCGTAATTAG 58.678 37.037 0.00 0.00 0.00 1.73
324 325 7.277098 GGCACTCATCAGTTTAGTTCGTAATTA 59.723 37.037 0.00 0.00 0.00 1.40
325 326 6.092259 GGCACTCATCAGTTTAGTTCGTAATT 59.908 38.462 0.00 0.00 0.00 1.40
326 327 5.581085 GGCACTCATCAGTTTAGTTCGTAAT 59.419 40.000 0.00 0.00 0.00 1.89
327 328 4.927425 GGCACTCATCAGTTTAGTTCGTAA 59.073 41.667 0.00 0.00 0.00 3.18
328 329 4.491676 GGCACTCATCAGTTTAGTTCGTA 58.508 43.478 0.00 0.00 0.00 3.43
329 330 3.326747 GGCACTCATCAGTTTAGTTCGT 58.673 45.455 0.00 0.00 0.00 3.85
330 331 2.673368 GGGCACTCATCAGTTTAGTTCG 59.327 50.000 0.00 0.00 0.00 3.95
331 332 3.944087 AGGGCACTCATCAGTTTAGTTC 58.056 45.455 0.00 0.00 0.00 3.01
332 333 4.373156 AAGGGCACTCATCAGTTTAGTT 57.627 40.909 0.00 0.00 0.00 2.24
333 334 4.074970 CAAAGGGCACTCATCAGTTTAGT 58.925 43.478 0.00 0.00 0.00 2.24
334 335 3.119708 GCAAAGGGCACTCATCAGTTTAG 60.120 47.826 0.00 0.00 43.97 1.85
335 336 2.819608 GCAAAGGGCACTCATCAGTTTA 59.180 45.455 0.00 0.00 43.97 2.01
336 337 1.615392 GCAAAGGGCACTCATCAGTTT 59.385 47.619 0.00 0.00 43.97 2.66
337 338 1.251251 GCAAAGGGCACTCATCAGTT 58.749 50.000 0.00 0.00 43.97 3.16
338 339 2.952714 GCAAAGGGCACTCATCAGT 58.047 52.632 0.00 0.00 43.97 3.41
348 349 2.678471 TTAGTACTACGGCAAAGGGC 57.322 50.000 0.91 0.00 43.74 5.19
349 350 3.869246 CACATTAGTACTACGGCAAAGGG 59.131 47.826 0.91 0.00 0.00 3.95
350 351 4.501071 ACACATTAGTACTACGGCAAAGG 58.499 43.478 0.91 0.00 0.00 3.11
351 352 5.407387 ACAACACATTAGTACTACGGCAAAG 59.593 40.000 0.91 0.00 0.00 2.77
352 353 5.299148 ACAACACATTAGTACTACGGCAAA 58.701 37.500 0.91 0.00 0.00 3.68
353 354 4.885413 ACAACACATTAGTACTACGGCAA 58.115 39.130 0.91 0.00 0.00 4.52
354 355 4.524316 ACAACACATTAGTACTACGGCA 57.476 40.909 0.91 0.00 0.00 5.69
355 356 5.644644 AGTACAACACATTAGTACTACGGC 58.355 41.667 0.91 0.00 44.68 5.68
359 360 6.456853 CGCCGTAGTACAACACATTAGTACTA 60.457 42.308 0.00 0.00 44.68 1.82
361 362 4.496895 CGCCGTAGTACAACACATTAGTAC 59.503 45.833 0.38 0.00 38.65 2.73
362 363 4.438608 CCGCCGTAGTACAACACATTAGTA 60.439 45.833 0.38 0.00 0.00 1.82
363 364 3.504863 CGCCGTAGTACAACACATTAGT 58.495 45.455 0.38 0.00 0.00 2.24
364 365 2.855963 CCGCCGTAGTACAACACATTAG 59.144 50.000 0.38 0.00 0.00 1.73
365 366 2.417107 CCCGCCGTAGTACAACACATTA 60.417 50.000 0.38 0.00 0.00 1.90
366 367 1.673626 CCCGCCGTAGTACAACACATT 60.674 52.381 0.38 0.00 0.00 2.71
367 368 0.108520 CCCGCCGTAGTACAACACAT 60.109 55.000 0.38 0.00 0.00 3.21
368 369 1.289694 CCCGCCGTAGTACAACACA 59.710 57.895 0.38 0.00 0.00 3.72
369 370 1.446618 CCCCGCCGTAGTACAACAC 60.447 63.158 0.38 0.00 0.00 3.32
370 371 0.610509 TACCCCGCCGTAGTACAACA 60.611 55.000 0.38 0.00 0.00 3.33
371 372 0.746659 ATACCCCGCCGTAGTACAAC 59.253 55.000 0.38 0.00 0.00 3.32
372 373 0.746063 CATACCCCGCCGTAGTACAA 59.254 55.000 0.38 0.00 0.00 2.41
373 374 1.108727 CCATACCCCGCCGTAGTACA 61.109 60.000 0.38 0.00 0.00 2.90
377 378 0.752054 TTTACCATACCCCGCCGTAG 59.248 55.000 0.00 0.00 0.00 3.51
382 383 2.351706 TTCCATTTACCATACCCCGC 57.648 50.000 0.00 0.00 0.00 6.13
390 391 4.079253 GCCTCTCACTTTTCCATTTACCA 58.921 43.478 0.00 0.00 0.00 3.25
489 490 2.395360 CGGCGCAGGATTTTTCCGA 61.395 57.895 10.83 0.00 39.23 4.55
490 491 2.100216 CGGCGCAGGATTTTTCCG 59.900 61.111 10.83 0.00 34.28 4.30
491 492 2.202610 GCGGCGCAGGATTTTTCC 60.203 61.111 29.21 0.00 0.00 3.13
492 493 2.576847 CGCGGCGCAGGATTTTTC 60.577 61.111 32.61 0.00 0.00 2.29
493 494 3.053291 TCGCGGCGCAGGATTTTT 61.053 55.556 32.61 0.00 0.00 1.94
562 564 3.457749 GGGTGGATGGATCTCTTCTCTTT 59.542 47.826 0.00 0.00 0.00 2.52
569 571 1.739750 GGATGGGTGGATGGATCTCT 58.260 55.000 0.00 0.00 0.00 3.10
570 572 0.322975 CGGATGGGTGGATGGATCTC 59.677 60.000 0.00 0.00 0.00 2.75
571 573 0.400525 ACGGATGGGTGGATGGATCT 60.401 55.000 0.00 0.00 0.00 2.75
572 574 0.035458 GACGGATGGGTGGATGGATC 59.965 60.000 0.00 0.00 0.00 3.36
674 676 1.477295 GGGTGGGTAAGAAGAGAGACG 59.523 57.143 0.00 0.00 0.00 4.18
675 677 2.234168 GTGGGTGGGTAAGAAGAGAGAC 59.766 54.545 0.00 0.00 0.00 3.36
676 678 2.537143 GTGGGTGGGTAAGAAGAGAGA 58.463 52.381 0.00 0.00 0.00 3.10
677 679 1.555533 GGTGGGTGGGTAAGAAGAGAG 59.444 57.143 0.00 0.00 0.00 3.20
678 680 1.151413 AGGTGGGTGGGTAAGAAGAGA 59.849 52.381 0.00 0.00 0.00 3.10
771 947 0.388520 GGGGTTTCGAATTGTGCAGC 60.389 55.000 0.00 0.00 0.00 5.25
772 948 0.243636 GGGGGTTTCGAATTGTGCAG 59.756 55.000 0.00 0.00 0.00 4.41
773 949 2.346597 GGGGGTTTCGAATTGTGCA 58.653 52.632 0.00 0.00 0.00 4.57
848 1033 2.484947 GCTCGGTTATAAAGGAGGTGGG 60.485 54.545 13.16 0.00 0.00 4.61
852 1037 1.270147 CCCGCTCGGTTATAAAGGAGG 60.270 57.143 7.59 4.50 0.00 4.30
999 1191 3.798954 CTTCTCGGCCGGCTCCATC 62.799 68.421 28.56 8.15 0.00 3.51
1139 1331 3.535962 CTGGGAGAGAGCGAGGGC 61.536 72.222 0.00 0.00 40.37 5.19
1183 1375 4.193334 TCAGATCCGCCAGCGACG 62.193 66.667 14.67 0.00 42.83 5.12
1189 1381 1.677633 TCAGTCGTCAGATCCGCCA 60.678 57.895 0.00 0.00 0.00 5.69
1223 1415 2.050442 GGCGAGGGCAAACAAACG 60.050 61.111 0.00 0.00 42.47 3.60
1546 1738 3.262660 TCATGCTCAGTTTGGAGATCTGT 59.737 43.478 0.00 0.00 37.05 3.41
1559 1751 0.107508 ACCACCGGAATCATGCTCAG 60.108 55.000 9.46 0.00 0.00 3.35
1597 1789 1.069636 GTGTAGTGCTTGCTGTTGAGC 60.070 52.381 0.00 0.00 46.44 4.26
1783 1975 6.690194 AGTAAGCAGGAATCTAAAATGCAG 57.310 37.500 0.00 0.00 39.34 4.41
1903 2098 5.596836 AATTGGCGTTATCATCATTGGTT 57.403 34.783 0.00 0.00 0.00 3.67
1955 2150 5.716228 TCATAATTGGCCAGACAACTTTCAT 59.284 36.000 5.11 0.00 32.39 2.57
2033 2228 8.494433 ACTGAATATTTGGCTTCTATAGGACAA 58.506 33.333 0.00 0.00 0.00 3.18
2067 2262 5.823209 TGAATGAGCAGAACCATACAATG 57.177 39.130 0.00 0.00 0.00 2.82
2391 2771 9.638176 AAAAGGCAAGAGAATACAGATATCATT 57.362 29.630 5.32 0.00 0.00 2.57
2392 2772 9.064706 CAAAAGGCAAGAGAATACAGATATCAT 57.935 33.333 5.32 0.00 0.00 2.45
2535 2915 5.635120 ACTATCTTCCAAAACTTCAAGGCT 58.365 37.500 0.00 0.00 0.00 4.58
2556 2936 6.705302 TCTTCATCAACTAAGATCAGCAACT 58.295 36.000 0.00 0.00 0.00 3.16
2557 2937 6.593382 ACTCTTCATCAACTAAGATCAGCAAC 59.407 38.462 0.00 0.00 31.60 4.17
2611 3007 7.645402 ACATAACTTGTAAACGGAAAAAGGAG 58.355 34.615 0.00 0.00 36.57 3.69
2675 3072 3.818773 AGGTATTGTCAGAACCCAAAACG 59.181 43.478 2.81 0.00 33.53 3.60
2982 3379 4.039366 GGTACTAAGCAGTAGAGGAATGGG 59.961 50.000 1.75 0.00 37.94 4.00
2999 3396 6.896860 TGCTAACTTATTACAGTGGGGTACTA 59.103 38.462 0.00 0.00 37.60 1.82
3046 3443 3.753272 GTGTTGTTACAGCTCCATGACAT 59.247 43.478 0.34 0.00 34.24 3.06
3101 3502 6.241385 CGCGTTTCTTAAGAAGGATGTTAAG 58.759 40.000 17.05 5.42 41.44 1.85
3160 3561 5.470098 CACAAGCTAGAAGTATTGTTGTGGT 59.530 40.000 0.00 0.00 39.60 4.16
3239 3640 3.809279 ACAAAAGCATTAAAAGCAGCACC 59.191 39.130 0.00 0.00 0.00 5.01
3277 3678 5.118990 GCACAGGAGATTGTTAGAGCATAA 58.881 41.667 0.00 0.00 0.00 1.90
3282 3683 3.616956 TGGCACAGGAGATTGTTAGAG 57.383 47.619 0.00 0.00 0.00 2.43
3300 3701 4.589216 TGAAGAACTGCAAAAGGATTGG 57.411 40.909 0.00 0.00 0.00 3.16
3301 3702 6.805271 CAGTATGAAGAACTGCAAAAGGATTG 59.195 38.462 0.00 0.00 39.69 2.67
3347 3748 1.242076 ACTGGCTCATGTTGCAGAAC 58.758 50.000 13.49 0.00 0.00 3.01
3673 4074 1.587613 GCGACAGGCTAGCTCTTCG 60.588 63.158 15.72 18.90 39.11 3.79
4005 4414 2.158813 GCGAACCCTGGAGGAATAATGA 60.159 50.000 0.00 0.00 39.89 2.57
4006 4415 2.158755 AGCGAACCCTGGAGGAATAATG 60.159 50.000 0.00 0.00 39.89 1.90
4054 4463 1.009829 GCTCATGGTGCTAACGGAAG 58.990 55.000 0.00 0.00 0.00 3.46
4073 4482 4.000557 GCACGACAGCACACACCG 62.001 66.667 0.00 0.00 0.00 4.94
4203 4620 1.351017 TGATTCCGGCTTTCCTCACTT 59.649 47.619 0.00 0.00 0.00 3.16
4205 4622 1.339151 ACTGATTCCGGCTTTCCTCAC 60.339 52.381 0.00 0.00 0.00 3.51
4225 4642 0.323360 GATACCCTTGCCAGTTGCCA 60.323 55.000 0.00 0.00 40.16 4.92
4226 4643 1.037579 GGATACCCTTGCCAGTTGCC 61.038 60.000 0.00 0.00 40.16 4.52
4227 4644 0.034089 AGGATACCCTTGCCAGTTGC 60.034 55.000 0.00 0.00 40.78 4.17
4248 4665 1.234821 ACCATACGTGCAAACAGTGG 58.765 50.000 0.00 0.00 0.00 4.00
4344 4761 0.876342 GGTTGATGCCCGATCGAGAC 60.876 60.000 18.66 5.84 33.17 3.36
4410 4827 4.920640 TTTCGAGGACCAGATGATCTAC 57.079 45.455 0.00 0.00 0.00 2.59
4426 4843 2.753055 TGGTCATCCAACGATTTCGA 57.247 45.000 7.01 0.00 41.25 3.71
4442 4860 5.944007 GGTACTTTGGAACAGTATGATTGGT 59.056 40.000 0.00 0.00 42.39 3.67
4467 4885 4.591321 TGCATTCCTTGACCCTAGATTT 57.409 40.909 0.00 0.00 0.00 2.17
4468 4886 4.530875 CTTGCATTCCTTGACCCTAGATT 58.469 43.478 0.00 0.00 0.00 2.40
4575 4997 7.217028 TGGAGGGAGTAGTAGATTACAACTA 57.783 40.000 0.00 0.00 0.00 2.24
4582 5004 5.157770 TGGATTGGAGGGAGTAGTAGATT 57.842 43.478 0.00 0.00 0.00 2.40
4599 5021 7.768120 TCAAAACTGCAACACTTATTTTGGATT 59.232 29.630 7.24 0.00 37.53 3.01
4610 5032 4.705023 ACCTTAGTTCAAAACTGCAACACT 59.295 37.500 2.65 0.00 42.84 3.55
4632 5054 9.027129 GTAATTTTGAACCAAGGTTGAACTAAC 57.973 33.333 9.61 0.23 38.60 2.34
4641 5063 4.885325 AGTGTCGTAATTTTGAACCAAGGT 59.115 37.500 0.00 0.00 0.00 3.50
4642 5064 5.432885 AGTGTCGTAATTTTGAACCAAGG 57.567 39.130 0.00 0.00 0.00 3.61
4657 5079 7.782049 TCCTTCAGATCAATAATAAGTGTCGT 58.218 34.615 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.