Multiple sequence alignment - TraesCS2A01G187200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G187200 chr2A 100.000 3452 0 0 1 3452 148868630 148872081 0.000000e+00 6375.0
1 TraesCS2A01G187200 chr2A 95.556 360 15 1 2739 3098 148907744 148908102 2.990000e-160 575.0
2 TraesCS2A01G187200 chr2B 91.554 2001 74 36 565 2531 210653977 210652038 0.000000e+00 2671.0
3 TraesCS2A01G187200 chr2B 91.532 555 37 6 6 553 210654765 210654214 0.000000e+00 756.0
4 TraesCS2A01G187200 chr2B 85.507 69 5 4 3318 3381 146984960 146984892 2.220000e-07 67.6
5 TraesCS2A01G187200 chr2D 89.943 1591 97 35 1535 3094 152628314 152626756 0.000000e+00 1993.0
6 TraesCS2A01G187200 chr2D 92.727 770 21 7 697 1441 152629147 152628388 0.000000e+00 1079.0
7 TraesCS2A01G187200 chr2D 90.317 568 31 10 6 555 152629747 152629186 0.000000e+00 723.0
8 TraesCS2A01G187200 chr3B 94.648 355 17 1 3098 3450 75342468 75342114 1.810000e-152 549.0
9 TraesCS2A01G187200 chr3B 93.487 261 17 0 3098 3358 75332750 75332490 4.180000e-104 388.0
10 TraesCS2A01G187200 chr5B 94.275 262 15 0 3098 3359 470720427 470720688 5.370000e-108 401.0
11 TraesCS2A01G187200 chr5B 81.106 217 41 0 1949 2165 381715440 381715224 1.270000e-39 174.0
12 TraesCS2A01G187200 chr1D 88.789 223 18 5 3234 3450 366208048 366208269 2.040000e-67 267.0
13 TraesCS2A01G187200 chr1D 77.114 201 33 11 3247 3438 342232539 342232735 1.690000e-18 104.0
14 TraesCS2A01G187200 chr1A 86.667 225 20 6 3234 3450 465531688 465531466 1.240000e-59 241.0
15 TraesCS2A01G187200 chr1A 92.701 137 8 2 3234 3369 465529243 465529108 2.720000e-46 196.0
16 TraesCS2A01G187200 chr5D 81.106 217 41 0 1949 2165 328434483 328434267 1.270000e-39 174.0
17 TraesCS2A01G187200 chr5D 82.036 167 29 1 1992 2157 328404615 328404449 1.290000e-29 141.0
18 TraesCS2A01G187200 chr5A 80.645 217 42 0 1949 2165 428153887 428154103 5.930000e-38 169.0
19 TraesCS2A01G187200 chr5A 83.908 174 28 0 1992 2165 428247802 428247975 2.130000e-37 167.0
20 TraesCS2A01G187200 chr5A 96.970 33 0 1 599 630 577923237 577923205 2.000000e-03 54.7
21 TraesCS2A01G187200 chr4B 92.857 112 6 2 3237 3347 626909920 626909810 9.910000e-36 161.0
22 TraesCS2A01G187200 chr4B 96.364 55 2 0 3237 3291 626922344 626922290 1.320000e-14 91.6
23 TraesCS2A01G187200 chr6B 80.172 116 23 0 2025 2140 225868163 225868278 1.710000e-13 87.9
24 TraesCS2A01G187200 chr6A 80.172 116 23 0 2025 2140 152060967 152060852 1.710000e-13 87.9
25 TraesCS2A01G187200 chr6A 94.444 36 2 0 3346 3381 486832408 486832373 4.810000e-04 56.5
26 TraesCS2A01G187200 chr7D 90.385 52 5 0 2533 2584 623704468 623704417 6.180000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G187200 chr2A 148868630 148872081 3451 False 6375.0 6375 100.000000 1 3452 1 chr2A.!!$F1 3451
1 TraesCS2A01G187200 chr2B 210652038 210654765 2727 True 1713.5 2671 91.543000 6 2531 2 chr2B.!!$R2 2525
2 TraesCS2A01G187200 chr2D 152626756 152629747 2991 True 1265.0 1993 90.995667 6 3094 3 chr2D.!!$R1 3088
3 TraesCS2A01G187200 chr1A 465529108 465531688 2580 True 218.5 241 89.684000 3234 3450 2 chr1A.!!$R1 216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 329 0.037303 AAGTGCCTGTGATGTGAGGG 59.963 55.0 0.00 0.0 0.0 4.30 F
1636 1923 0.883814 GCATCTTCATCCCGGAGCTG 60.884 60.0 0.73 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2159 0.110688 CCATGCACGTGACAAGTTCG 60.111 55.0 22.23 5.07 0.00 3.95 R
3407 3747 0.035458 GATCCGGCCAAGGGAGTATG 59.965 60.0 2.24 0.00 36.91 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 98 7.865706 ACATCACAATTGTCTTTAGGTATCC 57.134 36.000 8.48 0.00 0.00 2.59
125 131 6.511416 AGTGAGTAGCTAGTATTGCATCTTG 58.489 40.000 0.00 0.00 0.00 3.02
310 329 0.037303 AAGTGCCTGTGATGTGAGGG 59.963 55.000 0.00 0.00 0.00 4.30
311 330 2.042831 GTGCCTGTGATGTGAGGGC 61.043 63.158 0.00 0.00 42.73 5.19
330 349 3.428862 GGGCTGTGCATTGTAAACCATAC 60.429 47.826 0.00 0.00 0.00 2.39
334 353 5.123186 GCTGTGCATTGTAAACCATACACTA 59.877 40.000 0.00 0.00 0.00 2.74
459 478 4.591498 ACTATTGCTACGGGATGATAACCA 59.409 41.667 0.00 0.00 0.00 3.67
470 489 4.583073 GGGATGATAACCAAAAATACCGCT 59.417 41.667 0.00 0.00 0.00 5.52
486 505 2.276201 CCGCTCGATAACCAAACATCA 58.724 47.619 0.00 0.00 0.00 3.07
550 569 6.711645 ACTGTACCTCTATTGCTAGCTAGTAC 59.288 42.308 21.62 15.46 31.73 2.73
553 572 8.604184 TGTACCTCTATTGCTAGCTAGTACTAT 58.396 37.037 21.62 11.27 32.01 2.12
609 855 7.807977 ATATTATGAGATGGAGCAAAAACGT 57.192 32.000 0.00 0.00 0.00 3.99
611 857 4.853924 ATGAGATGGAGCAAAAACGTTT 57.146 36.364 7.96 7.96 0.00 3.60
623 869 9.575783 GGAGCAAAAACGTTTTTATATTATGGA 57.424 29.630 32.12 0.00 38.23 3.41
684 931 8.752005 AAAAATCATTATCATTTCTCTCCGGA 57.248 30.769 2.93 2.93 0.00 5.14
693 940 5.601662 TCATTTCTCTCCGGATACATGTTC 58.398 41.667 3.57 1.40 0.00 3.18
772 1020 4.442403 GCATATCATCATGCCGATAGTACG 59.558 45.833 9.05 0.00 44.55 3.67
774 1022 6.725246 CATATCATCATGCCGATAGTACGTA 58.275 40.000 9.05 0.00 31.20 3.57
775 1023 4.414999 TCATCATGCCGATAGTACGTAC 57.585 45.455 18.10 18.10 31.20 3.67
776 1024 3.816523 TCATCATGCCGATAGTACGTACA 59.183 43.478 26.55 13.44 31.20 2.90
777 1025 4.276431 TCATCATGCCGATAGTACGTACAA 59.724 41.667 26.55 4.50 31.20 2.41
792 1040 2.159653 CGTACAATGAAGGCTGCAACTC 60.160 50.000 0.00 0.00 0.00 3.01
1113 1385 4.507916 TCTCCTCCTCCTCCGCCG 62.508 72.222 0.00 0.00 0.00 6.46
1355 1628 2.729467 CGATCGACTCTTGACACTGACC 60.729 54.545 10.26 0.00 0.00 4.02
1445 1718 4.707448 TCTTGGTAAGTCCTGATCAGTCTC 59.293 45.833 21.11 10.72 37.07 3.36
1447 1720 4.274147 TGGTAAGTCCTGATCAGTCTCTC 58.726 47.826 21.11 13.50 37.07 3.20
1448 1721 4.263949 TGGTAAGTCCTGATCAGTCTCTCA 60.264 45.833 21.11 13.43 37.07 3.27
1449 1722 4.097286 GGTAAGTCCTGATCAGTCTCTCAC 59.903 50.000 21.11 11.61 0.00 3.51
1466 1739 3.387050 TCTCACATCACATCTCATCCCTG 59.613 47.826 0.00 0.00 0.00 4.45
1470 1743 3.324268 ACATCACATCTCATCCCTGCTAG 59.676 47.826 0.00 0.00 0.00 3.42
1471 1744 3.037851 TCACATCTCATCCCTGCTAGT 57.962 47.619 0.00 0.00 0.00 2.57
1472 1745 2.697229 TCACATCTCATCCCTGCTAGTG 59.303 50.000 0.00 0.00 0.00 2.74
1478 1753 2.964464 CTCATCCCTGCTAGTGTGATCT 59.036 50.000 0.00 0.00 0.00 2.75
1532 1807 5.568677 TGAACAATCTTTGATCGATTTTGCG 59.431 36.000 0.00 0.00 35.46 4.85
1636 1923 0.883814 GCATCTTCATCCCGGAGCTG 60.884 60.000 0.73 0.00 0.00 4.24
1663 1950 0.904649 AGATCGGCATCCTCAACACA 59.095 50.000 0.00 0.00 0.00 3.72
1855 2142 2.503375 GTCGGGTACGCACAGTCG 60.503 66.667 10.84 0.00 40.69 4.18
1856 2143 4.409218 TCGGGTACGCACAGTCGC 62.409 66.667 10.84 0.00 40.69 5.19
1859 2146 2.355363 GGTACGCACAGTCGCACA 60.355 61.111 0.00 0.00 0.00 4.57
1860 2147 2.654912 GGTACGCACAGTCGCACAC 61.655 63.158 0.00 0.00 0.00 3.82
1861 2148 1.947146 GTACGCACAGTCGCACACA 60.947 57.895 0.00 0.00 0.00 3.72
1862 2149 1.947146 TACGCACAGTCGCACACAC 60.947 57.895 0.00 0.00 0.00 3.82
1864 2151 2.597713 CGCACAGTCGCACACACAT 61.598 57.895 0.00 0.00 0.00 3.21
1865 2152 1.281566 CGCACAGTCGCACACACATA 61.282 55.000 0.00 0.00 0.00 2.29
1867 2154 1.201954 GCACAGTCGCACACACATATG 60.202 52.381 0.00 0.00 0.00 1.78
1868 2155 2.068519 CACAGTCGCACACACATATGT 58.931 47.619 1.41 1.41 40.80 2.29
1869 2156 2.092681 CACAGTCGCACACACATATGTC 59.907 50.000 5.07 0.00 36.72 3.06
1870 2157 2.288763 ACAGTCGCACACACATATGTCA 60.289 45.455 5.07 0.00 36.72 3.58
1871 2158 2.346545 CAGTCGCACACACATATGTCAG 59.653 50.000 5.07 3.93 36.72 3.51
1872 2159 1.061131 GTCGCACACACATATGTCAGC 59.939 52.381 5.07 6.81 36.72 4.26
1873 2160 0.025384 CGCACACACATATGTCAGCG 59.975 55.000 19.47 19.47 46.32 5.18
1874 2161 1.358877 GCACACACATATGTCAGCGA 58.641 50.000 5.07 0.00 36.72 4.93
1875 2162 1.731709 GCACACACATATGTCAGCGAA 59.268 47.619 5.07 0.00 36.72 4.70
1876 2163 2.474526 GCACACACATATGTCAGCGAAC 60.475 50.000 5.07 0.00 36.72 3.95
1877 2164 2.995939 CACACACATATGTCAGCGAACT 59.004 45.455 5.07 0.00 36.72 3.01
1878 2165 3.433274 CACACACATATGTCAGCGAACTT 59.567 43.478 5.07 0.00 36.72 2.66
1879 2166 3.433274 ACACACATATGTCAGCGAACTTG 59.567 43.478 5.07 0.00 36.72 3.16
1880 2167 3.433274 CACACATATGTCAGCGAACTTGT 59.567 43.478 5.07 0.00 36.72 3.16
1881 2168 3.679980 ACACATATGTCAGCGAACTTGTC 59.320 43.478 5.07 0.00 31.55 3.18
1884 2171 1.139989 ATGTCAGCGAACTTGTCACG 58.860 50.000 0.00 0.00 0.00 4.35
1902 2189 0.108186 CGTGCATGGCTCTCCTTGTA 60.108 55.000 0.00 0.00 39.14 2.41
1905 2192 2.168521 GTGCATGGCTCTCCTTGTACTA 59.831 50.000 9.86 0.00 44.25 1.82
1930 2222 3.471680 GGGCTAATCAAGTGATGTCTCC 58.528 50.000 0.00 0.00 34.49 3.71
2166 2458 2.279252 CCATCTTCCGGGTACGCG 60.279 66.667 23.99 23.99 39.22 6.01
2253 2551 4.220163 TGACCCTTTTTGGTGTTACGTTTT 59.780 37.500 0.00 0.00 39.24 2.43
2261 2559 3.553904 TGGTGTTACGTTTTAGGCCTTT 58.446 40.909 12.58 0.00 0.00 3.11
2282 2580 0.322187 CCCCCAAGTAAGGAACACGG 60.322 60.000 0.00 0.00 0.00 4.94
2443 2752 3.764237 ACTTGTACCCTGGTGTTGTAG 57.236 47.619 0.00 0.00 0.00 2.74
2454 2763 3.741249 TGGTGTTGTAGCCGATGTAAAA 58.259 40.909 0.00 0.00 0.00 1.52
2530 2847 3.537580 GTCGCCCAATGGTCTAACATTA 58.462 45.455 0.00 0.00 38.94 1.90
2549 2866 4.665833 TTACAAGAGCATATACAGCCGT 57.334 40.909 0.00 0.00 0.00 5.68
2575 2892 2.696187 GGCAAATCCGGCCCTTTAAATA 59.304 45.455 0.00 0.00 45.87 1.40
2579 2896 5.219633 CAAATCCGGCCCTTTAAATATTCG 58.780 41.667 0.00 0.00 0.00 3.34
2581 2898 1.069500 CCGGCCCTTTAAATATTCGCG 60.069 52.381 0.00 0.00 0.00 5.87
2582 2899 1.069500 CGGCCCTTTAAATATTCGCGG 60.069 52.381 6.13 0.00 0.00 6.46
2583 2900 2.223745 GGCCCTTTAAATATTCGCGGA 58.776 47.619 6.13 0.00 0.00 5.54
2602 2919 1.227089 CTCGCTTCGGATGACCCAG 60.227 63.158 0.00 0.00 34.14 4.45
2608 2925 0.544357 TTCGGATGACCCAGGACAGT 60.544 55.000 0.00 0.00 34.14 3.55
2611 2928 0.250513 GGATGACCCAGGACAGTGTC 59.749 60.000 15.24 15.24 34.14 3.67
2616 2933 2.207229 CCCAGGACAGTGTCGGACA 61.207 63.158 16.89 6.76 32.65 4.02
2621 2938 1.301479 GACAGTGTCGGACAACCCC 60.301 63.158 13.23 0.03 0.00 4.95
2622 2939 1.755393 GACAGTGTCGGACAACCCCT 61.755 60.000 13.23 2.65 0.00 4.79
2623 2940 1.004918 CAGTGTCGGACAACCCCTC 60.005 63.158 13.23 0.00 0.00 4.30
2625 2942 1.004918 GTGTCGGACAACCCCTCAG 60.005 63.158 13.23 0.00 0.00 3.35
2626 2943 2.214216 TGTCGGACAACCCCTCAGG 61.214 63.158 8.68 0.00 43.78 3.86
2645 2962 2.103263 AGGTCTCTTGTCAGACAACCAC 59.897 50.000 19.94 12.93 44.18 4.16
2647 2964 2.866762 GTCTCTTGTCAGACAACCACAC 59.133 50.000 12.24 3.47 42.25 3.82
2649 2966 3.126831 CTCTTGTCAGACAACCACACTC 58.873 50.000 12.24 0.00 33.96 3.51
2677 2994 9.577222 TCATATCTAAATTCTCAAATCCATGCA 57.423 29.630 0.00 0.00 0.00 3.96
2686 3008 6.778834 TCTCAAATCCATGCAAATACACAT 57.221 33.333 0.00 0.00 0.00 3.21
2715 3037 9.542462 TTTTTCTCGAATACTCAAAAGAGAAGA 57.458 29.630 0.00 0.15 42.98 2.87
2727 3067 8.478877 ACTCAAAAGAGAAGAAAGAGAGTTGTA 58.521 33.333 0.00 0.00 30.32 2.41
2728 3068 8.649973 TCAAAAGAGAAGAAAGAGAGTTGTAC 57.350 34.615 0.00 0.00 0.00 2.90
2729 3069 8.478877 TCAAAAGAGAAGAAAGAGAGTTGTACT 58.521 33.333 0.00 0.00 0.00 2.73
2730 3070 9.751542 CAAAAGAGAAGAAAGAGAGTTGTACTA 57.248 33.333 0.00 0.00 0.00 1.82
2733 3073 9.921637 AAGAGAAGAAAGAGAGTTGTACTAATG 57.078 33.333 0.00 0.00 0.00 1.90
2734 3074 9.303116 AGAGAAGAAAGAGAGTTGTACTAATGA 57.697 33.333 0.00 0.00 0.00 2.57
2735 3075 9.349145 GAGAAGAAAGAGAGTTGTACTAATGAC 57.651 37.037 0.00 0.00 0.00 3.06
2736 3076 8.308207 AGAAGAAAGAGAGTTGTACTAATGACC 58.692 37.037 0.00 0.00 0.00 4.02
2737 3077 6.622549 AGAAAGAGAGTTGTACTAATGACCG 58.377 40.000 0.00 0.00 0.00 4.79
2738 3078 5.979288 AAGAGAGTTGTACTAATGACCGT 57.021 39.130 0.00 0.00 0.00 4.83
2739 3079 5.564048 AGAGAGTTGTACTAATGACCGTC 57.436 43.478 0.00 0.00 0.00 4.79
2740 3080 4.398673 AGAGAGTTGTACTAATGACCGTCC 59.601 45.833 0.00 0.00 0.00 4.79
2741 3081 4.342359 AGAGTTGTACTAATGACCGTCCT 58.658 43.478 0.00 0.00 0.00 3.85
2742 3082 4.398673 AGAGTTGTACTAATGACCGTCCTC 59.601 45.833 0.00 0.00 0.00 3.71
2743 3083 4.084287 AGTTGTACTAATGACCGTCCTCA 58.916 43.478 0.00 0.00 0.00 3.86
2744 3084 4.525487 AGTTGTACTAATGACCGTCCTCAA 59.475 41.667 0.00 0.00 0.00 3.02
2745 3085 5.011329 AGTTGTACTAATGACCGTCCTCAAA 59.989 40.000 0.00 0.00 0.00 2.69
2746 3086 4.813027 TGTACTAATGACCGTCCTCAAAC 58.187 43.478 0.00 0.00 0.00 2.93
2747 3087 4.525487 TGTACTAATGACCGTCCTCAAACT 59.475 41.667 0.00 0.00 0.00 2.66
2748 3088 3.926616 ACTAATGACCGTCCTCAAACTG 58.073 45.455 0.00 0.00 0.00 3.16
2768 3108 5.103000 ACTGATCATTAGTACAAGCGACAC 58.897 41.667 0.00 0.00 0.00 3.67
2839 3179 0.392461 GTCCTCAAACGCATGGCCTA 60.392 55.000 3.32 0.00 0.00 3.93
2840 3180 0.546122 TCCTCAAACGCATGGCCTAT 59.454 50.000 3.32 0.00 0.00 2.57
2867 3207 3.627577 CAGGGATCATGTTTTCTAACCCG 59.372 47.826 0.00 0.00 40.75 5.28
2896 3236 1.672356 CAGTTGCCCAAGTCCTCGG 60.672 63.158 0.00 0.00 0.00 4.63
2942 3282 1.064946 CAGGATCGACGACTGCTCC 59.935 63.158 0.00 3.03 0.00 4.70
2943 3283 1.378646 AGGATCGACGACTGCTCCA 60.379 57.895 15.63 0.00 0.00 3.86
2992 3332 0.107800 CACAGGAGCCAGGATGTGAG 60.108 60.000 8.21 0.00 44.56 3.51
3025 3365 2.389715 GGATATGCCTACCTATCGCCT 58.610 52.381 0.00 0.00 0.00 5.52
3076 3416 4.394300 CCACCACTCAAGAAAGTCATCATC 59.606 45.833 0.00 0.00 0.00 2.92
3106 3446 4.626081 GGCTGCCGTGTCACACCT 62.626 66.667 1.35 0.00 0.00 4.00
3107 3447 3.349006 GCTGCCGTGTCACACCTG 61.349 66.667 1.24 0.00 0.00 4.00
3108 3448 3.349006 CTGCCGTGTCACACCTGC 61.349 66.667 1.24 6.24 31.92 4.85
3109 3449 3.814615 CTGCCGTGTCACACCTGCT 62.815 63.158 15.88 0.00 32.33 4.24
3110 3450 3.044305 GCCGTGTCACACCTGCTC 61.044 66.667 1.24 0.00 0.00 4.26
3111 3451 2.357517 CCGTGTCACACCTGCTCC 60.358 66.667 1.24 0.00 0.00 4.70
3112 3452 2.737180 CGTGTCACACCTGCTCCT 59.263 61.111 1.24 0.00 0.00 3.69
3113 3453 1.665916 CGTGTCACACCTGCTCCTG 60.666 63.158 1.24 0.00 0.00 3.86
3114 3454 1.447643 GTGTCACACCTGCTCCTGT 59.552 57.895 0.00 0.00 0.00 4.00
3115 3455 0.882042 GTGTCACACCTGCTCCTGTG 60.882 60.000 0.00 2.79 39.38 3.66
3116 3456 1.337384 TGTCACACCTGCTCCTGTGT 61.337 55.000 7.72 0.00 46.14 3.72
3117 3457 0.679505 GTCACACCTGCTCCTGTGTA 59.320 55.000 0.00 0.00 43.52 2.90
3118 3458 0.969149 TCACACCTGCTCCTGTGTAG 59.031 55.000 0.00 0.00 43.52 2.74
3119 3459 0.681733 CACACCTGCTCCTGTGTAGT 59.318 55.000 0.00 0.00 43.52 2.73
3120 3460 1.893137 CACACCTGCTCCTGTGTAGTA 59.107 52.381 0.00 0.00 43.52 1.82
3121 3461 2.094494 CACACCTGCTCCTGTGTAGTAG 60.094 54.545 0.00 0.00 43.52 2.57
3122 3462 2.171840 CACCTGCTCCTGTGTAGTAGT 58.828 52.381 0.00 0.00 0.00 2.73
3123 3463 2.094494 CACCTGCTCCTGTGTAGTAGTG 60.094 54.545 0.00 0.00 0.00 2.74
3124 3464 1.478510 CCTGCTCCTGTGTAGTAGTGG 59.521 57.143 0.00 0.00 0.00 4.00
3125 3465 2.447443 CTGCTCCTGTGTAGTAGTGGA 58.553 52.381 0.00 0.00 0.00 4.02
3126 3466 2.164624 CTGCTCCTGTGTAGTAGTGGAC 59.835 54.545 0.00 0.00 0.00 4.02
3127 3467 2.225041 TGCTCCTGTGTAGTAGTGGACT 60.225 50.000 0.00 0.00 42.69 3.85
3128 3468 3.009805 TGCTCCTGTGTAGTAGTGGACTA 59.990 47.826 0.00 0.00 39.81 2.59
3129 3469 4.015084 GCTCCTGTGTAGTAGTGGACTAA 58.985 47.826 0.00 0.00 42.43 2.24
3130 3470 4.461781 GCTCCTGTGTAGTAGTGGACTAAA 59.538 45.833 0.00 0.00 42.43 1.85
3131 3471 5.127356 GCTCCTGTGTAGTAGTGGACTAAAT 59.873 44.000 0.00 0.00 42.43 1.40
3132 3472 6.320672 GCTCCTGTGTAGTAGTGGACTAAATA 59.679 42.308 0.00 0.00 42.43 1.40
3133 3473 7.468906 GCTCCTGTGTAGTAGTGGACTAAATAG 60.469 44.444 0.00 0.00 42.43 1.73
3134 3474 7.040473 CCTGTGTAGTAGTGGACTAAATAGG 57.960 44.000 4.00 4.00 45.72 2.57
3135 3475 6.040616 CCTGTGTAGTAGTGGACTAAATAGGG 59.959 46.154 8.96 0.00 46.54 3.53
3136 3476 6.734532 TGTGTAGTAGTGGACTAAATAGGGA 58.265 40.000 0.00 0.00 42.43 4.20
3137 3477 6.832384 TGTGTAGTAGTGGACTAAATAGGGAG 59.168 42.308 0.00 0.00 42.43 4.30
3138 3478 7.059156 GTGTAGTAGTGGACTAAATAGGGAGA 58.941 42.308 0.00 0.00 42.43 3.71
3139 3479 7.559170 GTGTAGTAGTGGACTAAATAGGGAGAA 59.441 40.741 0.00 0.00 42.43 2.87
3140 3480 7.778853 TGTAGTAGTGGACTAAATAGGGAGAAG 59.221 40.741 0.00 0.00 42.43 2.85
3141 3481 6.137559 AGTAGTGGACTAAATAGGGAGAAGG 58.862 44.000 0.00 0.00 36.27 3.46
3142 3482 4.299485 AGTGGACTAAATAGGGAGAAGGG 58.701 47.826 0.00 0.00 0.00 3.95
3143 3483 4.038633 GTGGACTAAATAGGGAGAAGGGT 58.961 47.826 0.00 0.00 0.00 4.34
3144 3484 5.042827 AGTGGACTAAATAGGGAGAAGGGTA 60.043 44.000 0.00 0.00 0.00 3.69
3145 3485 5.664457 GTGGACTAAATAGGGAGAAGGGTAA 59.336 44.000 0.00 0.00 0.00 2.85
3146 3486 5.664457 TGGACTAAATAGGGAGAAGGGTAAC 59.336 44.000 0.00 0.00 0.00 2.50
3147 3487 5.904169 GGACTAAATAGGGAGAAGGGTAACT 59.096 44.000 0.00 0.00 0.00 2.24
3148 3488 7.071917 GGACTAAATAGGGAGAAGGGTAACTA 58.928 42.308 0.00 0.00 0.00 2.24
3149 3489 7.233144 GGACTAAATAGGGAGAAGGGTAACTAG 59.767 44.444 0.00 0.00 0.00 2.57
3150 3490 7.074501 ACTAAATAGGGAGAAGGGTAACTAGG 58.925 42.308 0.00 0.00 0.00 3.02
3151 3491 2.177811 AGGGAGAAGGGTAACTAGGC 57.822 55.000 0.00 0.00 0.00 3.93
3152 3492 1.652306 AGGGAGAAGGGTAACTAGGCT 59.348 52.381 0.00 0.00 0.00 4.58
3153 3493 1.763545 GGGAGAAGGGTAACTAGGCTG 59.236 57.143 0.00 0.00 0.00 4.85
3154 3494 2.626149 GGGAGAAGGGTAACTAGGCTGA 60.626 54.545 0.00 0.00 0.00 4.26
3155 3495 2.696187 GGAGAAGGGTAACTAGGCTGAG 59.304 54.545 0.00 0.00 0.00 3.35
3156 3496 2.101750 GAGAAGGGTAACTAGGCTGAGC 59.898 54.545 0.00 0.00 0.00 4.26
3174 3514 3.451894 CCAATGGGCGTCTTGGGC 61.452 66.667 0.17 0.00 38.60 5.36
3194 3534 3.663176 CCTGTGGCCAAGCGTGTG 61.663 66.667 7.24 0.00 0.00 3.82
3195 3535 2.901840 CTGTGGCCAAGCGTGTGT 60.902 61.111 7.24 0.00 0.00 3.72
3196 3536 1.596752 CTGTGGCCAAGCGTGTGTA 60.597 57.895 7.24 0.00 0.00 2.90
3197 3537 1.153147 TGTGGCCAAGCGTGTGTAA 60.153 52.632 7.24 0.00 0.00 2.41
3198 3538 1.163420 TGTGGCCAAGCGTGTGTAAG 61.163 55.000 7.24 0.00 0.00 2.34
3199 3539 2.258013 TGGCCAAGCGTGTGTAAGC 61.258 57.895 0.61 0.00 0.00 3.09
3200 3540 2.258013 GGCCAAGCGTGTGTAAGCA 61.258 57.895 0.00 0.00 33.45 3.91
3201 3541 1.652012 GCCAAGCGTGTGTAAGCAA 59.348 52.632 0.00 0.00 33.45 3.91
3202 3542 0.660300 GCCAAGCGTGTGTAAGCAAC 60.660 55.000 0.00 0.00 33.45 4.17
3203 3543 0.944386 CCAAGCGTGTGTAAGCAACT 59.056 50.000 0.00 0.00 33.45 3.16
3204 3544 2.139917 CCAAGCGTGTGTAAGCAACTA 58.860 47.619 0.00 0.00 33.45 2.24
3205 3545 2.096417 CCAAGCGTGTGTAAGCAACTAC 60.096 50.000 0.00 0.00 33.45 2.73
3206 3546 2.800544 CAAGCGTGTGTAAGCAACTACT 59.199 45.455 0.00 0.00 33.45 2.57
3207 3547 3.107642 AGCGTGTGTAAGCAACTACTT 57.892 42.857 0.00 0.00 33.45 2.24
3208 3548 4.247267 AGCGTGTGTAAGCAACTACTTA 57.753 40.909 0.00 0.00 33.45 2.24
3209 3549 4.624015 AGCGTGTGTAAGCAACTACTTAA 58.376 39.130 0.00 0.00 34.04 1.85
3210 3550 4.684703 AGCGTGTGTAAGCAACTACTTAAG 59.315 41.667 0.00 0.00 34.04 1.85
3211 3551 4.446719 GCGTGTGTAAGCAACTACTTAAGT 59.553 41.667 13.68 13.68 41.49 2.24
3212 3552 5.388164 GCGTGTGTAAGCAACTACTTAAGTC 60.388 44.000 12.39 0.00 37.50 3.01
3213 3553 5.919141 CGTGTGTAAGCAACTACTTAAGTCT 59.081 40.000 12.39 0.00 37.50 3.24
3214 3554 6.087820 CGTGTGTAAGCAACTACTTAAGTCTC 59.912 42.308 12.39 0.00 37.50 3.36
3215 3555 7.146648 GTGTGTAAGCAACTACTTAAGTCTCT 58.853 38.462 12.39 0.65 37.50 3.10
3216 3556 7.652507 GTGTGTAAGCAACTACTTAAGTCTCTT 59.347 37.037 12.39 11.10 37.50 2.85
3217 3557 7.652105 TGTGTAAGCAACTACTTAAGTCTCTTG 59.348 37.037 12.39 12.38 37.50 3.02
3218 3558 6.645415 TGTAAGCAACTACTTAAGTCTCTTGC 59.355 38.462 24.18 24.18 37.50 4.01
3219 3559 5.476091 AGCAACTACTTAAGTCTCTTGCT 57.524 39.130 26.52 26.52 37.50 3.91
3220 3560 6.591750 AGCAACTACTTAAGTCTCTTGCTA 57.408 37.500 28.73 7.59 38.89 3.49
3221 3561 7.176589 AGCAACTACTTAAGTCTCTTGCTAT 57.823 36.000 28.73 16.47 38.89 2.97
3222 3562 7.038659 AGCAACTACTTAAGTCTCTTGCTATG 58.961 38.462 28.73 13.57 38.89 2.23
3223 3563 6.814146 GCAACTACTTAAGTCTCTTGCTATGT 59.186 38.462 24.25 6.69 37.50 2.29
3224 3564 7.332182 GCAACTACTTAAGTCTCTTGCTATGTT 59.668 37.037 24.25 10.50 37.50 2.71
3225 3565 8.651588 CAACTACTTAAGTCTCTTGCTATGTTG 58.348 37.037 12.39 8.76 37.50 3.33
3226 3566 7.897864 ACTACTTAAGTCTCTTGCTATGTTGT 58.102 34.615 12.39 0.00 30.33 3.32
3227 3567 9.021807 ACTACTTAAGTCTCTTGCTATGTTGTA 57.978 33.333 12.39 0.00 30.33 2.41
3230 3570 9.726438 ACTTAAGTCTCTTGCTATGTTGTATTT 57.274 29.630 1.12 0.00 0.00 1.40
3231 3571 9.979270 CTTAAGTCTCTTGCTATGTTGTATTTG 57.021 33.333 0.00 0.00 0.00 2.32
3232 3572 7.986085 AAGTCTCTTGCTATGTTGTATTTGT 57.014 32.000 0.00 0.00 0.00 2.83
3240 3580 3.747099 ATGTTGTATTTGTCAGCGAGC 57.253 42.857 0.00 0.00 0.00 5.03
3254 3594 2.348059 CAGCGAGCAATTGAACTCTCTC 59.652 50.000 10.34 4.09 0.00 3.20
3255 3595 2.028658 AGCGAGCAATTGAACTCTCTCA 60.029 45.455 10.34 0.00 0.00 3.27
3267 3607 6.847421 TGAACTCTCTCATTCTGAATCTCA 57.153 37.500 0.00 0.00 0.00 3.27
3291 3631 0.395862 CCTTCTCCTACCTCGCCTCA 60.396 60.000 0.00 0.00 0.00 3.86
3315 3655 2.172293 GTCTGCTCTCCTCATCCCAAAT 59.828 50.000 0.00 0.00 0.00 2.32
3317 3657 3.118112 TCTGCTCTCCTCATCCCAAATTC 60.118 47.826 0.00 0.00 0.00 2.17
3319 3659 3.118112 TGCTCTCCTCATCCCAAATTCTC 60.118 47.826 0.00 0.00 0.00 2.87
3338 3678 0.179073 CTGTGCGATCGATCCCCTTT 60.179 55.000 21.57 0.00 0.00 3.11
3368 3708 3.062099 CGGTCGTCACAATTGGTAATCAG 59.938 47.826 10.83 0.00 0.00 2.90
3373 3713 4.265073 GTCACAATTGGTAATCAGAGCCT 58.735 43.478 10.83 0.00 0.00 4.58
3374 3714 4.702131 GTCACAATTGGTAATCAGAGCCTT 59.298 41.667 10.83 0.00 0.00 4.35
3375 3715 4.943705 TCACAATTGGTAATCAGAGCCTTC 59.056 41.667 10.83 0.00 0.00 3.46
3377 3717 5.183713 CACAATTGGTAATCAGAGCCTTCAA 59.816 40.000 10.83 0.00 0.00 2.69
3380 3720 7.038799 ACAATTGGTAATCAGAGCCTTCAATTT 60.039 33.333 10.83 0.00 33.17 1.82
3381 3721 5.902613 TGGTAATCAGAGCCTTCAATTTG 57.097 39.130 0.00 0.00 0.00 2.32
3383 3723 5.415701 TGGTAATCAGAGCCTTCAATTTGTC 59.584 40.000 0.00 0.00 0.00 3.18
3385 3725 2.426522 TCAGAGCCTTCAATTTGTCGG 58.573 47.619 0.00 0.00 0.00 4.79
3386 3726 2.038426 TCAGAGCCTTCAATTTGTCGGA 59.962 45.455 9.76 0.00 0.00 4.55
3387 3727 3.012518 CAGAGCCTTCAATTTGTCGGAT 58.987 45.455 9.76 4.61 0.00 4.18
3388 3728 3.441572 CAGAGCCTTCAATTTGTCGGATT 59.558 43.478 9.76 0.02 0.00 3.01
3389 3729 4.082125 AGAGCCTTCAATTTGTCGGATTT 58.918 39.130 9.76 0.00 0.00 2.17
3390 3730 4.524328 AGAGCCTTCAATTTGTCGGATTTT 59.476 37.500 9.76 0.00 0.00 1.82
3391 3731 5.011023 AGAGCCTTCAATTTGTCGGATTTTT 59.989 36.000 9.76 0.00 0.00 1.94
3392 3732 5.230182 AGCCTTCAATTTGTCGGATTTTTC 58.770 37.500 9.76 0.00 0.00 2.29
3393 3733 4.388773 GCCTTCAATTTGTCGGATTTTTCC 59.611 41.667 9.76 0.00 0.00 3.13
3394 3734 4.929211 CCTTCAATTTGTCGGATTTTTCCC 59.071 41.667 0.00 0.00 0.00 3.97
3395 3735 4.529109 TCAATTTGTCGGATTTTTCCCC 57.471 40.909 0.00 0.00 0.00 4.81
3396 3736 3.898123 TCAATTTGTCGGATTTTTCCCCA 59.102 39.130 0.00 0.00 0.00 4.96
3398 3738 1.623163 TTGTCGGATTTTTCCCCACC 58.377 50.000 0.00 0.00 0.00 4.61
3399 3739 0.606944 TGTCGGATTTTTCCCCACCG 60.607 55.000 0.00 0.00 44.09 4.94
3402 3742 1.676303 GGATTTTTCCCCACCGCGA 60.676 57.895 8.23 0.00 0.00 5.87
3404 3744 0.958876 GATTTTTCCCCACCGCGACT 60.959 55.000 8.23 0.00 0.00 4.18
3406 3746 3.540367 TTTTCCCCACCGCGACTCC 62.540 63.158 8.23 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.652421 TGAGTTTCGTATTATACCCGCA 57.348 40.909 0.00 0.00 0.00 5.69
92 98 7.670009 ATACTAGCTACTCACTACAATACGG 57.330 40.000 0.00 0.00 0.00 4.02
247 255 6.266080 TCCATACCTTAGTTCCCTCAAGTTA 58.734 40.000 0.00 0.00 0.00 2.24
254 262 6.213525 AGATTCTTCCATACCTTAGTTCCCT 58.786 40.000 0.00 0.00 0.00 4.20
296 315 0.675837 CACAGCCCTCACATCACAGG 60.676 60.000 0.00 0.00 0.00 4.00
310 329 4.082787 AGTGTATGGTTTACAATGCACAGC 60.083 41.667 17.19 0.00 34.03 4.40
311 330 5.627499 AGTGTATGGTTTACAATGCACAG 57.373 39.130 17.19 0.00 34.03 3.66
459 478 5.181622 TGTTTGGTTATCGAGCGGTATTTTT 59.818 36.000 0.00 0.00 0.00 1.94
470 489 4.131649 ACGGATGATGTTTGGTTATCGA 57.868 40.909 0.00 0.00 0.00 3.59
486 505 7.033530 TCCGCAATTTTAATGATTAACGGAT 57.966 32.000 17.33 3.35 38.45 4.18
576 595 9.337396 TGCTCCATCTCATAATATAAAACGTTT 57.663 29.630 7.96 7.96 0.00 3.60
578 597 8.902540 TTGCTCCATCTCATAATATAAAACGT 57.097 30.769 0.00 0.00 0.00 3.99
585 831 7.807977 ACGTTTTTGCTCCATCTCATAATAT 57.192 32.000 0.00 0.00 0.00 1.28
596 842 9.360093 CCATAATATAAAAACGTTTTTGCTCCA 57.640 29.630 36.92 23.32 40.33 3.86
627 873 9.453830 AGGAAAGACTGAATATATTACCCTCTT 57.546 33.333 0.00 0.62 0.00 2.85
630 876 8.440771 CCAAGGAAAGACTGAATATATTACCCT 58.559 37.037 0.00 0.00 0.00 4.34
631 877 8.437575 TCCAAGGAAAGACTGAATATATTACCC 58.562 37.037 0.00 0.00 0.00 3.69
632 878 9.847224 TTCCAAGGAAAGACTGAATATATTACC 57.153 33.333 0.00 0.00 0.00 2.85
679 926 5.183228 GGAGAAAAAGAACATGTATCCGGA 58.817 41.667 6.61 6.61 0.00 5.14
681 928 5.143916 CGGAGAAAAAGAACATGTATCCG 57.856 43.478 0.00 0.00 40.89 4.18
683 930 5.642063 TCCACGGAGAAAAAGAACATGTATC 59.358 40.000 0.00 0.00 0.00 2.24
684 931 5.411669 GTCCACGGAGAAAAAGAACATGTAT 59.588 40.000 0.00 0.00 0.00 2.29
693 940 4.062293 TGTATGTGTCCACGGAGAAAAAG 58.938 43.478 0.00 0.00 0.00 2.27
772 1020 2.159653 CGAGTTGCAGCCTTCATTGTAC 60.160 50.000 0.00 0.00 0.00 2.90
774 1022 0.877071 CGAGTTGCAGCCTTCATTGT 59.123 50.000 0.00 0.00 0.00 2.71
775 1023 0.455633 GCGAGTTGCAGCCTTCATTG 60.456 55.000 0.00 0.00 45.45 2.82
776 1024 1.878775 GCGAGTTGCAGCCTTCATT 59.121 52.632 0.00 0.00 45.45 2.57
777 1025 2.393768 CGCGAGTTGCAGCCTTCAT 61.394 57.895 0.00 0.00 46.97 2.57
1073 1345 4.465512 GCCATCGTTGCTGCACCG 62.466 66.667 13.65 13.65 0.00 4.94
1079 1351 4.704833 ACCAGCGCCATCGTTGCT 62.705 61.111 2.29 0.00 44.05 3.91
1080 1352 4.166011 GACCAGCGCCATCGTTGC 62.166 66.667 2.29 0.00 44.05 4.17
1355 1628 2.916556 CGAGACGCACACACACACG 61.917 63.158 0.00 0.00 0.00 4.49
1445 1718 3.729966 CAGGGATGAGATGTGATGTGAG 58.270 50.000 0.00 0.00 0.00 3.51
1447 1720 2.158798 AGCAGGGATGAGATGTGATGTG 60.159 50.000 0.00 0.00 0.00 3.21
1448 1721 2.125233 AGCAGGGATGAGATGTGATGT 58.875 47.619 0.00 0.00 0.00 3.06
1449 1722 2.932855 AGCAGGGATGAGATGTGATG 57.067 50.000 0.00 0.00 0.00 3.07
1466 1739 2.947852 ACGACAACAGATCACACTAGC 58.052 47.619 0.00 0.00 0.00 3.42
1470 1743 3.059597 CCAAGAACGACAACAGATCACAC 60.060 47.826 0.00 0.00 0.00 3.82
1471 1744 3.130633 CCAAGAACGACAACAGATCACA 58.869 45.455 0.00 0.00 0.00 3.58
1472 1745 3.131396 ACCAAGAACGACAACAGATCAC 58.869 45.455 0.00 0.00 0.00 3.06
1478 1753 3.491639 CGATGTTACCAAGAACGACAACA 59.508 43.478 0.00 0.00 31.59 3.33
1499 1774 5.454736 TCAAAGATTGTTCATGTCGATCG 57.545 39.130 9.36 9.36 32.65 3.69
1500 1775 6.019559 TCGATCAAAGATTGTTCATGTCGATC 60.020 38.462 10.64 10.64 30.57 3.69
1501 1776 5.812127 TCGATCAAAGATTGTTCATGTCGAT 59.188 36.000 0.00 0.00 30.57 3.59
1502 1777 5.167845 TCGATCAAAGATTGTTCATGTCGA 58.832 37.500 0.00 0.00 32.76 4.20
1532 1807 3.126528 CGGGTCGGATCCTACACC 58.873 66.667 17.51 15.40 0.00 4.16
1636 1923 1.162800 GGATGCCGATCTTGGTCAGC 61.163 60.000 0.00 0.00 0.00 4.26
1852 2139 1.061131 GCTGACATATGTGTGTGCGAC 59.939 52.381 14.43 0.00 39.09 5.19
1853 2140 1.358877 GCTGACATATGTGTGTGCGA 58.641 50.000 14.43 0.00 39.09 5.10
1855 2142 1.358877 TCGCTGACATATGTGTGTGC 58.641 50.000 14.43 10.43 39.09 4.57
1856 2143 2.995939 AGTTCGCTGACATATGTGTGTG 59.004 45.455 14.43 11.86 39.09 3.82
1859 2146 3.664107 ACAAGTTCGCTGACATATGTGT 58.336 40.909 14.43 0.00 42.49 3.72
1860 2147 3.679502 TGACAAGTTCGCTGACATATGTG 59.320 43.478 14.43 0.38 0.00 3.21
1861 2148 3.679980 GTGACAAGTTCGCTGACATATGT 59.320 43.478 8.43 8.43 0.00 2.29
1862 2149 3.241773 CGTGACAAGTTCGCTGACATATG 60.242 47.826 0.00 0.00 31.94 1.78
1864 2151 2.287970 ACGTGACAAGTTCGCTGACATA 60.288 45.455 0.00 0.00 31.94 2.29
1865 2152 1.139989 CGTGACAAGTTCGCTGACAT 58.860 50.000 0.00 0.00 31.94 3.06
1867 2154 0.229753 CACGTGACAAGTTCGCTGAC 59.770 55.000 10.90 0.00 31.94 3.51
1868 2155 1.487452 GCACGTGACAAGTTCGCTGA 61.487 55.000 22.23 0.00 31.94 4.26
1869 2156 1.083401 GCACGTGACAAGTTCGCTG 60.083 57.895 22.23 0.00 31.94 5.18
1870 2157 0.880278 ATGCACGTGACAAGTTCGCT 60.880 50.000 22.23 0.00 31.94 4.93
1871 2158 0.722469 CATGCACGTGACAAGTTCGC 60.722 55.000 22.23 0.00 0.00 4.70
1872 2159 0.110688 CCATGCACGTGACAAGTTCG 60.111 55.000 22.23 5.07 0.00 3.95
1873 2160 0.385974 GCCATGCACGTGACAAGTTC 60.386 55.000 22.23 0.00 0.00 3.01
1874 2161 0.819259 AGCCATGCACGTGACAAGTT 60.819 50.000 22.23 8.09 0.00 2.66
1875 2162 1.227943 AGCCATGCACGTGACAAGT 60.228 52.632 22.23 0.00 0.00 3.16
1876 2163 0.952497 AGAGCCATGCACGTGACAAG 60.952 55.000 22.23 13.37 0.00 3.16
1877 2164 0.950555 GAGAGCCATGCACGTGACAA 60.951 55.000 22.23 3.83 0.00 3.18
1878 2165 1.374631 GAGAGCCATGCACGTGACA 60.375 57.895 22.23 17.15 0.00 3.58
1879 2166 2.103042 GGAGAGCCATGCACGTGAC 61.103 63.158 22.23 11.46 0.00 3.67
1880 2167 1.830587 AAGGAGAGCCATGCACGTGA 61.831 55.000 22.23 4.80 36.29 4.35
1881 2168 1.376424 AAGGAGAGCCATGCACGTG 60.376 57.895 12.28 12.28 36.29 4.49
1884 2171 1.065854 AGTACAAGGAGAGCCATGCAC 60.066 52.381 0.00 0.00 36.34 4.57
1902 2189 5.103940 ACATCACTTGATTAGCCCCATTAGT 60.104 40.000 0.00 0.00 31.21 2.24
1905 2192 4.079558 AGACATCACTTGATTAGCCCCATT 60.080 41.667 0.00 0.00 31.21 3.16
1930 2222 0.515564 CCTTAGGTTTCCAACACGCG 59.484 55.000 3.53 3.53 0.00 6.01
2261 2559 0.111639 GTGTTCCTTACTTGGGGGCA 59.888 55.000 0.00 0.00 0.00 5.36
2282 2580 3.118884 TCGGATTAGTTGCTAACTCCCAC 60.119 47.826 5.04 0.00 41.77 4.61
2355 2653 1.900486 ACGGTCTACTTCCCAGGAAAG 59.100 52.381 0.00 0.00 33.34 2.62
2357 2655 1.263356 CACGGTCTACTTCCCAGGAA 58.737 55.000 0.00 0.00 0.00 3.36
2358 2656 0.613853 CCACGGTCTACTTCCCAGGA 60.614 60.000 0.00 0.00 0.00 3.86
2359 2657 0.613853 TCCACGGTCTACTTCCCAGG 60.614 60.000 0.00 0.00 0.00 4.45
2360 2658 1.137086 CATCCACGGTCTACTTCCCAG 59.863 57.143 0.00 0.00 0.00 4.45
2361 2659 1.191535 CATCCACGGTCTACTTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
2362 2660 1.481871 TCATCCACGGTCTACTTCCC 58.518 55.000 0.00 0.00 0.00 3.97
2363 2661 2.224066 CCATCATCCACGGTCTACTTCC 60.224 54.545 0.00 0.00 0.00 3.46
2364 2662 2.431057 ACCATCATCCACGGTCTACTTC 59.569 50.000 0.00 0.00 0.00 3.01
2365 2663 2.467880 ACCATCATCCACGGTCTACTT 58.532 47.619 0.00 0.00 0.00 2.24
2366 2664 2.160721 ACCATCATCCACGGTCTACT 57.839 50.000 0.00 0.00 0.00 2.57
2367 2665 3.321111 ACATACCATCATCCACGGTCTAC 59.679 47.826 0.00 0.00 34.12 2.59
2368 2666 3.572642 ACATACCATCATCCACGGTCTA 58.427 45.455 0.00 0.00 34.12 2.59
2369 2667 2.398588 ACATACCATCATCCACGGTCT 58.601 47.619 0.00 0.00 34.12 3.85
2370 2668 2.910688 ACATACCATCATCCACGGTC 57.089 50.000 0.00 0.00 34.12 4.79
2371 2669 4.974645 ATTACATACCATCATCCACGGT 57.025 40.909 0.00 0.00 36.79 4.83
2474 2783 7.715249 ACTCGTAGACAATGCCAACATAATAAT 59.285 33.333 0.00 0.00 34.62 1.28
2479 2788 4.159693 AGACTCGTAGACAATGCCAACATA 59.840 41.667 0.00 0.00 34.62 2.29
2480 2789 3.055819 AGACTCGTAGACAATGCCAACAT 60.056 43.478 0.00 0.00 38.49 2.71
2481 2790 2.299013 AGACTCGTAGACAATGCCAACA 59.701 45.455 0.00 0.00 0.00 3.33
2490 2799 4.584688 TCGCGAGACTCGTAGACA 57.415 55.556 24.80 3.36 42.81 3.41
2530 2847 3.637229 AGTACGGCTGTATATGCTCTTGT 59.363 43.478 9.01 0.00 32.11 3.16
2581 2898 1.227002 GGTCATCCGAAGCGAGTCC 60.227 63.158 0.00 0.00 0.00 3.85
2582 2899 1.227002 GGGTCATCCGAAGCGAGTC 60.227 63.158 0.00 0.00 33.83 3.36
2583 2900 1.949847 CTGGGTCATCCGAAGCGAGT 61.950 60.000 0.00 0.00 38.76 4.18
2593 2910 0.108615 CGACACTGTCCTGGGTCATC 60.109 60.000 3.50 0.00 0.00 2.92
2602 2919 1.301479 GGGTTGTCCGACACTGTCC 60.301 63.158 0.00 2.18 33.83 4.02
2608 2925 2.214216 CCTGAGGGGTTGTCCGACA 61.214 63.158 0.00 0.00 36.01 4.35
2621 2938 3.553922 GGTTGTCTGACAAGAGACCTGAG 60.554 52.174 22.61 0.00 41.59 3.35
2622 2939 2.365617 GGTTGTCTGACAAGAGACCTGA 59.634 50.000 22.61 0.00 41.59 3.86
2623 2940 2.103094 TGGTTGTCTGACAAGAGACCTG 59.897 50.000 22.61 0.00 41.59 4.00
2625 2942 2.158957 TGTGGTTGTCTGACAAGAGACC 60.159 50.000 22.61 20.13 41.59 3.85
2626 2943 2.866762 GTGTGGTTGTCTGACAAGAGAC 59.133 50.000 22.61 17.97 39.00 3.36
2627 2944 2.766263 AGTGTGGTTGTCTGACAAGAGA 59.234 45.455 22.61 9.01 39.00 3.10
2628 2945 3.126831 GAGTGTGGTTGTCTGACAAGAG 58.873 50.000 22.61 0.00 39.00 2.85
2629 2946 2.158957 GGAGTGTGGTTGTCTGACAAGA 60.159 50.000 22.61 10.35 39.00 3.02
2630 2947 2.158900 AGGAGTGTGGTTGTCTGACAAG 60.159 50.000 22.61 0.00 39.00 3.16
2633 2950 1.412710 TGAGGAGTGTGGTTGTCTGAC 59.587 52.381 0.00 0.00 0.00 3.51
2634 2951 1.788229 TGAGGAGTGTGGTTGTCTGA 58.212 50.000 0.00 0.00 0.00 3.27
2703 3025 8.478877 AGTACAACTCTCTTTCTTCTCTTTTGA 58.521 33.333 0.00 0.00 0.00 2.69
2711 3033 7.273815 CGGTCATTAGTACAACTCTCTTTCTTC 59.726 40.741 0.00 0.00 0.00 2.87
2712 3034 7.091443 CGGTCATTAGTACAACTCTCTTTCTT 58.909 38.462 0.00 0.00 0.00 2.52
2713 3035 6.208994 ACGGTCATTAGTACAACTCTCTTTCT 59.791 38.462 0.00 0.00 0.00 2.52
2714 3036 6.388278 ACGGTCATTAGTACAACTCTCTTTC 58.612 40.000 0.00 0.00 0.00 2.62
2715 3037 6.342338 ACGGTCATTAGTACAACTCTCTTT 57.658 37.500 0.00 0.00 0.00 2.52
2727 3067 3.576982 TCAGTTTGAGGACGGTCATTAGT 59.423 43.478 10.76 0.00 0.00 2.24
2728 3068 4.188247 TCAGTTTGAGGACGGTCATTAG 57.812 45.455 10.76 0.00 0.00 1.73
2729 3069 4.221924 TGATCAGTTTGAGGACGGTCATTA 59.778 41.667 10.76 0.00 0.00 1.90
2730 3070 3.007940 TGATCAGTTTGAGGACGGTCATT 59.992 43.478 10.76 0.00 0.00 2.57
2731 3071 2.567169 TGATCAGTTTGAGGACGGTCAT 59.433 45.455 10.76 1.86 0.00 3.06
2732 3072 1.967779 TGATCAGTTTGAGGACGGTCA 59.032 47.619 10.76 0.00 0.00 4.02
2733 3073 2.743636 TGATCAGTTTGAGGACGGTC 57.256 50.000 0.00 0.00 0.00 4.79
2734 3074 3.703001 AATGATCAGTTTGAGGACGGT 57.297 42.857 0.09 0.00 0.00 4.83
2735 3075 4.759782 ACTAATGATCAGTTTGAGGACGG 58.240 43.478 0.00 0.00 0.00 4.79
2736 3076 6.330278 TGTACTAATGATCAGTTTGAGGACG 58.670 40.000 0.00 0.00 0.00 4.79
2737 3077 7.201565 GCTTGTACTAATGATCAGTTTGAGGAC 60.202 40.741 0.00 0.00 0.00 3.85
2738 3078 6.818644 GCTTGTACTAATGATCAGTTTGAGGA 59.181 38.462 0.00 0.00 0.00 3.71
2739 3079 6.237942 CGCTTGTACTAATGATCAGTTTGAGG 60.238 42.308 0.00 0.00 0.00 3.86
2740 3080 6.531594 TCGCTTGTACTAATGATCAGTTTGAG 59.468 38.462 0.00 0.00 0.00 3.02
2741 3081 6.310467 GTCGCTTGTACTAATGATCAGTTTGA 59.690 38.462 0.00 0.00 0.00 2.69
2742 3082 6.090763 TGTCGCTTGTACTAATGATCAGTTTG 59.909 38.462 0.00 0.00 0.00 2.93
2743 3083 6.090898 GTGTCGCTTGTACTAATGATCAGTTT 59.909 38.462 0.00 0.00 0.00 2.66
2744 3084 5.577164 GTGTCGCTTGTACTAATGATCAGTT 59.423 40.000 0.00 0.00 0.00 3.16
2745 3085 5.103000 GTGTCGCTTGTACTAATGATCAGT 58.897 41.667 0.09 0.00 0.00 3.41
2746 3086 4.205181 CGTGTCGCTTGTACTAATGATCAG 59.795 45.833 0.09 0.00 0.00 2.90
2747 3087 4.102649 CGTGTCGCTTGTACTAATGATCA 58.897 43.478 0.00 0.00 0.00 2.92
2748 3088 4.348656 TCGTGTCGCTTGTACTAATGATC 58.651 43.478 0.00 0.00 0.00 2.92
2768 3108 1.349627 GCCATGTTCTGTGCGATCG 59.650 57.895 11.69 11.69 0.00 3.69
2803 3143 1.542544 GACGGTCAATTAGGTCGTCG 58.457 55.000 2.62 0.00 40.22 5.12
2839 3179 5.447778 AGAAAACATGATCCCTGAGACAT 57.552 39.130 0.00 0.00 0.00 3.06
2840 3180 4.916041 AGAAAACATGATCCCTGAGACA 57.084 40.909 0.00 0.00 0.00 3.41
2867 3207 2.751837 GCAACTGCTGGGGCTACC 60.752 66.667 0.00 0.00 39.59 3.18
2896 3236 4.062853 CTCAATAGCATTCGCACATAGC 57.937 45.455 0.00 0.00 42.27 2.97
2935 3275 0.109086 CGTCTTCGACATGGAGCAGT 60.109 55.000 0.00 0.00 39.71 4.40
2942 3282 0.654160 ATGCATGCGTCTTCGACATG 59.346 50.000 14.09 8.23 45.08 3.21
2943 3283 1.063027 CAATGCATGCGTCTTCGACAT 59.937 47.619 13.95 0.00 39.71 3.06
2963 3303 2.125350 CTCCTGTGGAAGGCTCGC 60.125 66.667 0.00 0.00 46.92 5.03
2992 3332 3.518705 AGGCATATCCTCACTGATCATCC 59.481 47.826 0.00 0.00 43.20 3.51
3014 3354 3.134879 CCGGCAAGGCGATAGGTA 58.865 61.111 17.95 0.00 0.00 3.08
3094 3434 2.357517 GGAGCAGGTGTGACACGG 60.358 66.667 9.90 5.66 34.83 4.94
3095 3435 1.665916 CAGGAGCAGGTGTGACACG 60.666 63.158 9.90 0.00 34.83 4.49
3096 3436 0.882042 CACAGGAGCAGGTGTGACAC 60.882 60.000 7.29 7.29 45.84 3.67
3097 3437 1.337384 ACACAGGAGCAGGTGTGACA 61.337 55.000 16.50 0.00 45.84 3.58
3098 3438 0.679505 TACACAGGAGCAGGTGTGAC 59.320 55.000 16.50 0.00 46.87 3.67
3099 3439 0.969149 CTACACAGGAGCAGGTGTGA 59.031 55.000 16.50 3.13 46.87 3.58
3100 3440 0.681733 ACTACACAGGAGCAGGTGTG 59.318 55.000 7.61 9.95 46.87 3.82
3102 3442 2.094494 CACTACTACACAGGAGCAGGTG 60.094 54.545 0.00 0.00 35.97 4.00
3103 3443 2.171840 CACTACTACACAGGAGCAGGT 58.828 52.381 0.00 0.00 35.97 4.00
3104 3444 1.478510 CCACTACTACACAGGAGCAGG 59.521 57.143 0.00 0.00 35.97 4.85
3105 3445 2.164624 GTCCACTACTACACAGGAGCAG 59.835 54.545 0.00 0.00 35.97 4.24
3106 3446 2.168496 GTCCACTACTACACAGGAGCA 58.832 52.381 0.00 0.00 35.97 4.26
3107 3447 2.448453 AGTCCACTACTACACAGGAGC 58.552 52.381 0.00 0.00 35.97 4.70
3108 3448 6.777213 ATTTAGTCCACTACTACACAGGAG 57.223 41.667 0.00 0.00 40.48 3.69
3109 3449 6.832384 CCTATTTAGTCCACTACTACACAGGA 59.168 42.308 0.00 0.00 40.48 3.86
3110 3450 6.040616 CCCTATTTAGTCCACTACTACACAGG 59.959 46.154 0.00 0.00 40.48 4.00
3111 3451 6.832384 TCCCTATTTAGTCCACTACTACACAG 59.168 42.308 0.00 0.00 40.48 3.66
3112 3452 6.734532 TCCCTATTTAGTCCACTACTACACA 58.265 40.000 0.00 0.00 40.48 3.72
3113 3453 7.059156 TCTCCCTATTTAGTCCACTACTACAC 58.941 42.308 0.00 0.00 40.48 2.90
3114 3454 7.217028 TCTCCCTATTTAGTCCACTACTACA 57.783 40.000 0.00 0.00 40.48 2.74
3115 3455 7.231115 CCTTCTCCCTATTTAGTCCACTACTAC 59.769 44.444 0.00 0.00 40.48 2.73
3116 3456 7.296098 CCTTCTCCCTATTTAGTCCACTACTA 58.704 42.308 0.00 0.00 39.80 1.82
3117 3457 6.137559 CCTTCTCCCTATTTAGTCCACTACT 58.862 44.000 0.00 0.00 42.62 2.57
3118 3458 5.304871 CCCTTCTCCCTATTTAGTCCACTAC 59.695 48.000 0.00 0.00 0.00 2.73
3119 3459 5.042827 ACCCTTCTCCCTATTTAGTCCACTA 60.043 44.000 0.00 0.00 0.00 2.74
3120 3460 4.265353 ACCCTTCTCCCTATTTAGTCCACT 60.265 45.833 0.00 0.00 0.00 4.00
3121 3461 4.038633 ACCCTTCTCCCTATTTAGTCCAC 58.961 47.826 0.00 0.00 0.00 4.02
3122 3462 4.363546 ACCCTTCTCCCTATTTAGTCCA 57.636 45.455 0.00 0.00 0.00 4.02
3123 3463 5.904169 AGTTACCCTTCTCCCTATTTAGTCC 59.096 44.000 0.00 0.00 0.00 3.85
3124 3464 7.233144 CCTAGTTACCCTTCTCCCTATTTAGTC 59.767 44.444 0.00 0.00 0.00 2.59
3125 3465 7.074501 CCTAGTTACCCTTCTCCCTATTTAGT 58.925 42.308 0.00 0.00 0.00 2.24
3126 3466 6.014413 GCCTAGTTACCCTTCTCCCTATTTAG 60.014 46.154 0.00 0.00 0.00 1.85
3127 3467 5.842874 GCCTAGTTACCCTTCTCCCTATTTA 59.157 44.000 0.00 0.00 0.00 1.40
3128 3468 4.659368 GCCTAGTTACCCTTCTCCCTATTT 59.341 45.833 0.00 0.00 0.00 1.40
3129 3469 4.077923 AGCCTAGTTACCCTTCTCCCTATT 60.078 45.833 0.00 0.00 0.00 1.73
3130 3470 3.471690 AGCCTAGTTACCCTTCTCCCTAT 59.528 47.826 0.00 0.00 0.00 2.57
3131 3471 2.863879 AGCCTAGTTACCCTTCTCCCTA 59.136 50.000 0.00 0.00 0.00 3.53
3132 3472 1.652306 AGCCTAGTTACCCTTCTCCCT 59.348 52.381 0.00 0.00 0.00 4.20
3133 3473 1.763545 CAGCCTAGTTACCCTTCTCCC 59.236 57.143 0.00 0.00 0.00 4.30
3134 3474 2.696187 CTCAGCCTAGTTACCCTTCTCC 59.304 54.545 0.00 0.00 0.00 3.71
3135 3475 2.101750 GCTCAGCCTAGTTACCCTTCTC 59.898 54.545 0.00 0.00 0.00 2.87
3136 3476 2.112190 GCTCAGCCTAGTTACCCTTCT 58.888 52.381 0.00 0.00 0.00 2.85
3137 3477 1.139256 GGCTCAGCCTAGTTACCCTTC 59.861 57.143 9.09 0.00 46.69 3.46
3138 3478 1.205055 GGCTCAGCCTAGTTACCCTT 58.795 55.000 9.09 0.00 46.69 3.95
3139 3479 2.917804 GGCTCAGCCTAGTTACCCT 58.082 57.895 9.09 0.00 46.69 4.34
3157 3497 3.451894 GCCCAAGACGCCCATTGG 61.452 66.667 0.00 0.00 44.64 3.16
3158 3498 3.451894 GGCCCAAGACGCCCATTG 61.452 66.667 0.00 0.00 40.78 2.82
3177 3517 3.663176 CACACGCTTGGCCACAGG 61.663 66.667 3.88 0.00 0.00 4.00
3178 3518 1.163420 TTACACACGCTTGGCCACAG 61.163 55.000 3.88 7.83 0.00 3.66
3179 3519 1.153147 TTACACACGCTTGGCCACA 60.153 52.632 3.88 0.00 0.00 4.17
3180 3520 1.574428 CTTACACACGCTTGGCCAC 59.426 57.895 3.88 0.00 0.00 5.01
3181 3521 2.258013 GCTTACACACGCTTGGCCA 61.258 57.895 0.00 0.00 0.00 5.36
3182 3522 1.791103 TTGCTTACACACGCTTGGCC 61.791 55.000 0.00 0.00 0.00 5.36
3183 3523 0.660300 GTTGCTTACACACGCTTGGC 60.660 55.000 0.00 0.00 0.00 4.52
3184 3524 0.944386 AGTTGCTTACACACGCTTGG 59.056 50.000 0.00 0.00 0.00 3.61
3185 3525 2.800544 AGTAGTTGCTTACACACGCTTG 59.199 45.455 0.00 0.00 0.00 4.01
3186 3526 3.107642 AGTAGTTGCTTACACACGCTT 57.892 42.857 0.00 0.00 0.00 4.68
3187 3527 2.814280 AGTAGTTGCTTACACACGCT 57.186 45.000 0.00 0.00 0.00 5.07
3188 3528 4.446719 ACTTAAGTAGTTGCTTACACACGC 59.553 41.667 6.26 0.00 31.29 5.34
3189 3529 5.919141 AGACTTAAGTAGTTGCTTACACACG 59.081 40.000 8.42 0.00 37.17 4.49
3190 3530 7.146648 AGAGACTTAAGTAGTTGCTTACACAC 58.853 38.462 8.42 0.00 37.17 3.82
3191 3531 7.286215 AGAGACTTAAGTAGTTGCTTACACA 57.714 36.000 8.42 0.00 37.17 3.72
3192 3532 7.359347 GCAAGAGACTTAAGTAGTTGCTTACAC 60.359 40.741 26.66 7.70 37.17 2.90
3193 3533 6.645415 GCAAGAGACTTAAGTAGTTGCTTACA 59.355 38.462 26.66 0.00 37.17 2.41
3194 3534 6.869388 AGCAAGAGACTTAAGTAGTTGCTTAC 59.131 38.462 28.93 15.66 41.57 2.34
3195 3535 6.994221 AGCAAGAGACTTAAGTAGTTGCTTA 58.006 36.000 28.93 0.00 41.57 3.09
3196 3536 5.859495 AGCAAGAGACTTAAGTAGTTGCTT 58.141 37.500 28.93 19.81 41.57 3.91
3197 3537 5.476091 AGCAAGAGACTTAAGTAGTTGCT 57.524 39.130 28.93 28.93 40.53 3.91
3198 3538 6.814146 ACATAGCAAGAGACTTAAGTAGTTGC 59.186 38.462 26.66 26.66 37.17 4.17
3199 3539 8.651588 CAACATAGCAAGAGACTTAAGTAGTTG 58.348 37.037 8.42 12.79 37.17 3.16
3200 3540 8.368668 ACAACATAGCAAGAGACTTAAGTAGTT 58.631 33.333 8.42 0.00 37.17 2.24
3201 3541 7.897864 ACAACATAGCAAGAGACTTAAGTAGT 58.102 34.615 8.42 0.00 40.71 2.73
3204 3544 9.726438 AAATACAACATAGCAAGAGACTTAAGT 57.274 29.630 8.13 8.13 0.00 2.24
3205 3545 9.979270 CAAATACAACATAGCAAGAGACTTAAG 57.021 33.333 0.00 0.00 0.00 1.85
3206 3546 9.502091 ACAAATACAACATAGCAAGAGACTTAA 57.498 29.630 0.00 0.00 0.00 1.85
3207 3547 9.151471 GACAAATACAACATAGCAAGAGACTTA 57.849 33.333 0.00 0.00 0.00 2.24
3208 3548 7.661437 TGACAAATACAACATAGCAAGAGACTT 59.339 33.333 0.00 0.00 0.00 3.01
3209 3549 7.161404 TGACAAATACAACATAGCAAGAGACT 58.839 34.615 0.00 0.00 0.00 3.24
3210 3550 7.364522 TGACAAATACAACATAGCAAGAGAC 57.635 36.000 0.00 0.00 0.00 3.36
3211 3551 6.092670 GCTGACAAATACAACATAGCAAGAGA 59.907 38.462 0.00 0.00 0.00 3.10
3212 3552 6.253746 GCTGACAAATACAACATAGCAAGAG 58.746 40.000 0.00 0.00 0.00 2.85
3213 3553 5.163864 CGCTGACAAATACAACATAGCAAGA 60.164 40.000 0.00 0.00 0.00 3.02
3214 3554 5.023920 CGCTGACAAATACAACATAGCAAG 58.976 41.667 0.00 0.00 0.00 4.01
3215 3555 4.693095 TCGCTGACAAATACAACATAGCAA 59.307 37.500 0.00 0.00 0.00 3.91
3216 3556 4.249661 TCGCTGACAAATACAACATAGCA 58.750 39.130 0.00 0.00 0.00 3.49
3217 3557 4.783450 GCTCGCTGACAAATACAACATAGC 60.783 45.833 0.00 0.00 0.00 2.97
3218 3558 4.329801 TGCTCGCTGACAAATACAACATAG 59.670 41.667 0.00 0.00 0.00 2.23
3219 3559 4.249661 TGCTCGCTGACAAATACAACATA 58.750 39.130 0.00 0.00 0.00 2.29
3220 3560 3.073678 TGCTCGCTGACAAATACAACAT 58.926 40.909 0.00 0.00 0.00 2.71
3221 3561 2.488952 TGCTCGCTGACAAATACAACA 58.511 42.857 0.00 0.00 0.00 3.33
3222 3562 3.536158 TTGCTCGCTGACAAATACAAC 57.464 42.857 0.00 0.00 0.00 3.32
3223 3563 4.215185 TCAATTGCTCGCTGACAAATACAA 59.785 37.500 0.00 0.00 0.00 2.41
3224 3564 3.750652 TCAATTGCTCGCTGACAAATACA 59.249 39.130 0.00 0.00 0.00 2.29
3225 3565 4.340894 TCAATTGCTCGCTGACAAATAC 57.659 40.909 0.00 0.00 0.00 1.89
3226 3566 4.455533 AGTTCAATTGCTCGCTGACAAATA 59.544 37.500 0.00 0.00 0.00 1.40
3227 3567 3.254166 AGTTCAATTGCTCGCTGACAAAT 59.746 39.130 0.00 0.00 0.00 2.32
3228 3568 2.618241 AGTTCAATTGCTCGCTGACAAA 59.382 40.909 0.00 0.00 0.00 2.83
3229 3569 2.221169 AGTTCAATTGCTCGCTGACAA 58.779 42.857 0.00 0.00 0.00 3.18
3230 3570 1.800586 GAGTTCAATTGCTCGCTGACA 59.199 47.619 0.00 0.00 0.00 3.58
3231 3571 2.072298 AGAGTTCAATTGCTCGCTGAC 58.928 47.619 0.00 0.00 36.88 3.51
3232 3572 2.028658 AGAGAGTTCAATTGCTCGCTGA 60.029 45.455 15.11 0.00 39.69 4.26
3254 3594 5.692928 AGAAGGGGATTGAGATTCAGAATG 58.307 41.667 0.00 0.00 37.54 2.67
3255 3595 5.163109 GGAGAAGGGGATTGAGATTCAGAAT 60.163 44.000 0.00 0.00 0.00 2.40
3267 3607 2.035331 GCGAGGTAGGAGAAGGGGATT 61.035 57.143 0.00 0.00 0.00 3.01
3291 3631 1.327303 GGATGAGGAGAGCAGACGAT 58.673 55.000 0.00 0.00 0.00 3.73
3315 3655 0.385751 GGGATCGATCGCACAGAGAA 59.614 55.000 31.00 0.00 39.31 2.87
3317 3657 1.006805 GGGGATCGATCGCACAGAG 60.007 63.158 34.64 0.00 41.06 3.35
3319 3659 0.179073 AAAGGGGATCGATCGCACAG 60.179 55.000 34.64 0.00 41.06 3.66
3338 3678 0.460722 TTGTGACGACCGAACCTTGA 59.539 50.000 0.00 0.00 0.00 3.02
3368 3708 4.440839 AAATCCGACAAATTGAAGGCTC 57.559 40.909 0.00 0.00 0.00 4.70
3373 3713 4.345257 TGGGGAAAAATCCGACAAATTGAA 59.655 37.500 0.00 0.00 0.00 2.69
3374 3714 3.898123 TGGGGAAAAATCCGACAAATTGA 59.102 39.130 0.00 0.00 0.00 2.57
3375 3715 3.993736 GTGGGGAAAAATCCGACAAATTG 59.006 43.478 0.00 0.00 33.90 2.32
3377 3717 2.565391 GGTGGGGAAAAATCCGACAAAT 59.435 45.455 0.00 0.00 35.15 2.32
3380 3720 0.606944 CGGTGGGGAAAAATCCGACA 60.607 55.000 0.00 0.00 43.22 4.35
3381 3721 1.929806 GCGGTGGGGAAAAATCCGAC 61.930 60.000 6.09 0.00 43.22 4.79
3383 3723 2.882132 GCGGTGGGGAAAAATCCG 59.118 61.111 0.00 0.00 43.37 4.18
3385 3725 0.958876 AGTCGCGGTGGGGAAAAATC 60.959 55.000 6.13 0.00 36.82 2.17
3386 3726 0.958876 GAGTCGCGGTGGGGAAAAAT 60.959 55.000 6.13 0.00 36.82 1.82
3387 3727 1.598685 GAGTCGCGGTGGGGAAAAA 60.599 57.895 6.13 0.00 36.82 1.94
3388 3728 2.031465 GAGTCGCGGTGGGGAAAA 59.969 61.111 6.13 0.00 36.82 2.29
3389 3729 4.011517 GGAGTCGCGGTGGGGAAA 62.012 66.667 6.13 0.00 36.82 3.13
3393 3733 3.151710 TATGGGAGTCGCGGTGGG 61.152 66.667 6.13 0.00 0.00 4.61
3394 3734 2.106332 GTATGGGAGTCGCGGTGG 59.894 66.667 6.13 0.00 0.00 4.61
3395 3735 1.065928 GAGTATGGGAGTCGCGGTG 59.934 63.158 6.13 0.00 0.00 4.94
3396 3736 2.125961 GGAGTATGGGAGTCGCGGT 61.126 63.158 6.13 0.00 0.00 5.68
3398 3738 1.392710 AAGGGAGTATGGGAGTCGCG 61.393 60.000 0.00 0.00 43.58 5.87
3399 3739 0.105039 CAAGGGAGTATGGGAGTCGC 59.895 60.000 0.00 0.00 40.07 5.19
3402 3742 0.988678 GGCCAAGGGAGTATGGGAGT 60.989 60.000 0.00 0.00 37.19 3.85
3404 3744 2.070039 CGGCCAAGGGAGTATGGGA 61.070 63.158 2.24 0.00 37.19 4.37
3406 3746 1.418908 ATCCGGCCAAGGGAGTATGG 61.419 60.000 2.24 0.00 36.91 2.74
3407 3747 0.035458 GATCCGGCCAAGGGAGTATG 59.965 60.000 2.24 0.00 36.91 2.39
3408 3748 1.472662 CGATCCGGCCAAGGGAGTAT 61.473 60.000 2.24 0.00 36.91 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.