Multiple sequence alignment - TraesCS2A01G187000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G187000 chr2A 100.000 4988 0 0 1 4988 148853575 148858562 0.000000e+00 9212
1 TraesCS2A01G187000 chr2A 97.744 399 7 1 2854 3252 51389035 51389431 0.000000e+00 686
2 TraesCS2A01G187000 chr2A 97.494 399 8 1 2854 3252 449233334 449233730 0.000000e+00 680
3 TraesCS2A01G187000 chr2A 96.098 410 8 4 2854 3262 54843304 54842902 0.000000e+00 662
4 TraesCS2A01G187000 chr2B 95.250 1221 44 7 1485 2693 210665360 210664142 0.000000e+00 1921
5 TraesCS2A01G187000 chr2B 87.709 1432 98 29 1 1362 210666890 210665467 0.000000e+00 1598
6 TraesCS2A01G187000 chr2B 94.334 953 38 8 3251 4191 210663943 210662995 0.000000e+00 1447
7 TraesCS2A01G187000 chr2B 94.830 793 34 5 4202 4988 210662904 210662113 0.000000e+00 1230
8 TraesCS2A01G187000 chr2B 99.412 170 1 0 2691 2860 210664105 210663936 4.850000e-80 309
9 TraesCS2A01G187000 chr2D 95.466 794 29 3 4202 4988 152656497 152655704 0.000000e+00 1260
10 TraesCS2A01G187000 chr2D 93.519 756 39 7 3251 4005 152659163 152658417 0.000000e+00 1116
11 TraesCS2A01G187000 chr2D 92.133 750 28 16 2140 2860 152659903 152659156 0.000000e+00 1029
12 TraesCS2A01G187000 chr2D 90.231 778 34 12 641 1377 152661270 152660494 0.000000e+00 977
13 TraesCS2A01G187000 chr2D 93.027 588 22 8 1493 2080 152660496 152659928 0.000000e+00 841
14 TraesCS2A01G187000 chr2D 88.690 336 30 6 215 546 503913510 503913179 2.160000e-108 403
15 TraesCS2A01G187000 chr2D 85.714 210 19 4 3992 4191 152656796 152656588 1.410000e-50 211
16 TraesCS2A01G187000 chr2D 93.651 126 7 1 1370 1494 114520277 114520402 2.370000e-43 187
17 TraesCS2A01G187000 chr2D 91.791 134 9 2 1375 1506 437904055 437903922 8.530000e-43 185
18 TraesCS2A01G187000 chr2D 93.407 91 5 1 551 641 152661421 152661332 3.130000e-27 134
19 TraesCS2A01G187000 chr5A 98.997 399 2 1 2854 3252 116577323 116576927 0.000000e+00 713
20 TraesCS2A01G187000 chr3A 98.489 397 5 1 2856 3252 730121960 730121565 0.000000e+00 699
21 TraesCS2A01G187000 chr3A 96.992 399 10 1 2854 3252 673218552 673218948 0.000000e+00 669
22 TraesCS2A01G187000 chr3A 91.589 214 18 0 1 214 737314648 737314861 3.780000e-76 296
23 TraesCS2A01G187000 chr6A 98.010 402 6 1 2851 3252 509422505 509422904 0.000000e+00 697
24 TraesCS2A01G187000 chr6A 98.205 390 4 1 2854 3243 21551182 21551568 0.000000e+00 678
25 TraesCS2A01G187000 chr5B 96.822 409 11 2 2845 3252 498821260 498821667 0.000000e+00 682
26 TraesCS2A01G187000 chr3B 90.533 338 26 5 215 548 489694210 489694545 4.580000e-120 442
27 TraesCS2A01G187000 chr3B 92.093 215 17 0 2 216 489693968 489694182 2.260000e-78 303
28 TraesCS2A01G187000 chr6D 89.254 335 31 5 215 548 101207755 101208085 9.990000e-112 414
29 TraesCS2A01G187000 chr6D 89.124 331 31 5 215 544 35028997 35028671 1.670000e-109 407
30 TraesCS2A01G187000 chr6D 95.833 120 4 1 1376 1495 17055120 17055002 5.100000e-45 193
31 TraesCS2A01G187000 chr7D 89.157 332 31 5 215 544 414102064 414102392 4.650000e-110 409
32 TraesCS2A01G187000 chr7D 88.288 333 33 5 215 544 20424227 20424556 1.300000e-105 394
33 TraesCS2A01G187000 chr7D 91.121 214 19 0 1 214 414101821 414102034 1.760000e-74 291
34 TraesCS2A01G187000 chr7D 91.121 214 17 2 1 213 488690493 488690705 6.320000e-74 289
35 TraesCS2A01G187000 chr3D 88.131 337 33 6 215 547 23629856 23629523 1.300000e-105 394
36 TraesCS2A01G187000 chr3D 91.121 214 19 0 1 214 608806543 608806330 1.760000e-74 291
37 TraesCS2A01G187000 chr7A 87.834 337 36 5 215 548 68041132 68041466 1.680000e-104 390
38 TraesCS2A01G187000 chr4A 87.870 338 34 7 215 548 741029660 741029994 1.680000e-104 390
39 TraesCS2A01G187000 chr1D 92.056 214 17 0 1 214 211805561 211805774 8.120000e-78 302
40 TraesCS2A01G187000 chr1A 91.038 212 19 0 3 214 584349903 584349692 2.270000e-73 287
41 TraesCS2A01G187000 chr1B 90.698 215 18 2 1 214 141284931 141285144 8.170000e-73 285
42 TraesCS2A01G187000 chr1B 92.857 126 9 0 1370 1495 559136833 559136958 3.070000e-42 183
43 TraesCS2A01G187000 chr1B 92.857 126 9 0 1370 1495 559143756 559143881 3.070000e-42 183
44 TraesCS2A01G187000 chr1B 92.063 126 10 0 1370 1495 559150681 559150806 1.430000e-40 178
45 TraesCS2A01G187000 chr7B 94.958 119 6 0 1376 1494 589467042 589467160 2.370000e-43 187
46 TraesCS2A01G187000 chr4B 92.857 126 9 0 1369 1494 411629679 411629804 3.070000e-42 183
47 TraesCS2A01G187000 chr6B 91.667 132 8 2 1366 1495 293966298 293966168 3.970000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G187000 chr2A 148853575 148858562 4987 False 9212.000000 9212 100.000000 1 4988 1 chr2A.!!$F2 4987
1 TraesCS2A01G187000 chr2B 210662113 210666890 4777 True 1301.000000 1921 94.307000 1 4988 5 chr2B.!!$R1 4987
2 TraesCS2A01G187000 chr2D 152655704 152661421 5717 True 795.428571 1260 91.928143 551 4988 7 chr2D.!!$R3 4437
3 TraesCS2A01G187000 chr3B 489693968 489694545 577 False 372.500000 442 91.313000 2 548 2 chr3B.!!$F1 546
4 TraesCS2A01G187000 chr7D 414101821 414102392 571 False 350.000000 409 90.139000 1 544 2 chr7D.!!$F3 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 385 0.037697 TGCTTGGTACGCGACAGATT 60.038 50.0 15.93 0.0 0.00 2.40 F
486 517 0.250901 GATGTGCTGTTCACCCCAGT 60.251 55.0 0.00 0.0 45.03 4.00 F
660 769 1.260544 AGAAAGCATTGAAGCCCACC 58.739 50.0 0.00 0.0 34.23 4.61 F
1392 1552 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.0 0.00 3.46 F
2870 3082 0.108186 TGACTAGCAAGATGCCCGTG 60.108 55.0 0.00 0.0 46.52 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1360 0.036294 GCCAGTGGTAGAGGTTGTCC 60.036 60.0 11.74 0.0 0.00 4.02 R
1373 1533 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.0 0.00 0.0 0.00 2.73 R
1472 1632 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.0 0.00 0.0 0.00 2.27 R
2917 3129 0.037447 TCCGCATGGGTCAATCACAA 59.963 50.0 9.14 0.0 37.00 3.33 R
4507 6448 0.468029 AAGGGGCCAATATTCTGCCG 60.468 55.0 15.84 0.0 46.31 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.687215 GTGCTGCTGCTCCCGTCA 62.687 66.667 17.00 0.00 40.48 4.35
52 53 2.045926 GCTCCCGTCACTTGGCAT 60.046 61.111 0.00 0.00 0.00 4.40
150 151 2.122167 GTGTTGGGCGGTGGTTTGA 61.122 57.895 0.00 0.00 0.00 2.69
155 156 3.670377 GGCGGTGGTTTGACTGGC 61.670 66.667 0.00 0.00 40.24 4.85
156 157 2.594592 GCGGTGGTTTGACTGGCT 60.595 61.111 0.00 0.00 0.00 4.75
175 176 4.629523 GTTCCGGTTGGGCGGTGA 62.630 66.667 0.00 0.00 35.24 4.02
254 284 2.452064 CGGTGGTAGCCATCCCCAT 61.452 63.158 0.00 0.00 35.28 4.00
257 288 1.342975 GGTGGTAGCCATCCCCATTTT 60.343 52.381 0.00 0.00 35.28 1.82
259 290 1.929494 TGGTAGCCATCCCCATTTTCT 59.071 47.619 0.00 0.00 0.00 2.52
265 296 0.746659 CATCCCCATTTTCTTCCGCC 59.253 55.000 0.00 0.00 0.00 6.13
267 298 1.291109 TCCCCATTTTCTTCCGCCTA 58.709 50.000 0.00 0.00 0.00 3.93
293 324 3.672767 GGAAACCCTAAGACTCGTTCA 57.327 47.619 0.00 0.00 0.00 3.18
308 339 3.807631 TTCAGGCAGCAGCGTCGTT 62.808 57.895 0.00 0.00 43.41 3.85
330 361 1.438651 CGTCGCATCCCTTCTTGAAA 58.561 50.000 0.00 0.00 0.00 2.69
348 379 2.709125 AAGTGCTGCTTGGTACGCGA 62.709 55.000 15.93 0.00 35.80 5.87
354 385 0.037697 TGCTTGGTACGCGACAGATT 60.038 50.000 15.93 0.00 0.00 2.40
437 468 1.954146 GTCGAGCTGCCGTTGTTGA 60.954 57.895 0.00 0.00 0.00 3.18
462 493 9.265938 GACATTTGTTTCTTCTTTTTCTTTTGC 57.734 29.630 0.00 0.00 0.00 3.68
486 517 0.250901 GATGTGCTGTTCACCCCAGT 60.251 55.000 0.00 0.00 45.03 4.00
597 628 9.030301 CAAAATATACTTTTATTTTCTGGGCCG 57.970 33.333 0.00 0.00 38.89 6.13
612 643 1.816224 GGGCCGAAATGCAAAGAGTTA 59.184 47.619 0.00 0.00 0.00 2.24
614 645 3.438360 GGCCGAAATGCAAAGAGTTATG 58.562 45.455 0.00 0.00 0.00 1.90
615 646 2.854185 GCCGAAATGCAAAGAGTTATGC 59.146 45.455 0.00 0.00 42.86 3.14
622 653 2.557924 TGCAAAGAGTTATGCCCAAGTG 59.442 45.455 0.00 0.00 41.87 3.16
660 769 1.260544 AGAAAGCATTGAAGCCCACC 58.739 50.000 0.00 0.00 34.23 4.61
681 790 3.064324 CCAGCCGCCAAAGGGAAG 61.064 66.667 0.00 0.00 35.59 3.46
782 906 1.574702 GCGGGCGTTAAGTTCAAGCT 61.575 55.000 0.00 0.00 0.00 3.74
786 910 1.397343 GGCGTTAAGTTCAAGCTAGCC 59.603 52.381 12.13 0.00 35.00 3.93
857 995 3.430931 CTGAAGCTAAGCGTAGACTGAC 58.569 50.000 11.12 6.33 0.00 3.51
893 1032 4.903045 AGGATTAAGGTCTGTTCCGAAA 57.097 40.909 0.00 0.00 0.00 3.46
957 1096 1.332178 GTCTCAGCGACAGTTCTTCG 58.668 55.000 0.00 0.00 42.37 3.79
1027 1166 2.513897 CGTCATCTTTCCCCGGCC 60.514 66.667 0.00 0.00 0.00 6.13
1381 1541 7.989947 TCCATGGGATATAATTAGTACTCCC 57.010 40.000 13.02 13.62 42.27 4.30
1383 1543 7.844779 TCCATGGGATATAATTAGTACTCCCTC 59.155 40.741 13.02 0.00 42.38 4.30
1385 1545 6.192773 TGGGATATAATTAGTACTCCCTCCG 58.807 44.000 18.16 0.00 42.38 4.63
1386 1546 6.193504 GGGATATAATTAGTACTCCCTCCGT 58.806 44.000 0.00 0.00 39.42 4.69
1387 1547 6.320926 GGGATATAATTAGTACTCCCTCCGTC 59.679 46.154 0.00 0.00 39.42 4.79
1388 1548 6.320926 GGATATAATTAGTACTCCCTCCGTCC 59.679 46.154 0.00 0.00 0.00 4.79
1389 1549 1.978454 ATTAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
1390 1550 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1392 1552 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1396 1556 0.320697 CTCCCTCCGTCCGAAAAAGT 59.679 55.000 0.00 0.00 0.00 2.66
1397 1557 0.760572 TCCCTCCGTCCGAAAAAGTT 59.239 50.000 0.00 0.00 0.00 2.66
1398 1558 1.141455 TCCCTCCGTCCGAAAAAGTTT 59.859 47.619 0.00 0.00 0.00 2.66
1399 1559 1.265905 CCCTCCGTCCGAAAAAGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
1401 1561 2.032290 CCTCCGTCCGAAAAAGTTTGTC 60.032 50.000 0.00 0.00 0.00 3.18
1403 1563 1.002142 CCGTCCGAAAAAGTTTGTCCC 60.002 52.381 0.00 0.00 0.00 4.46
1404 1564 1.944709 CGTCCGAAAAAGTTTGTCCCT 59.055 47.619 0.00 0.00 0.00 4.20
1405 1565 2.356695 CGTCCGAAAAAGTTTGTCCCTT 59.643 45.455 0.00 0.00 0.00 3.95
1406 1566 3.560896 CGTCCGAAAAAGTTTGTCCCTTA 59.439 43.478 0.00 0.00 0.00 2.69
1408 1568 5.448904 CGTCCGAAAAAGTTTGTCCCTTAAA 60.449 40.000 0.00 0.00 0.00 1.52
1410 1570 6.419710 GTCCGAAAAAGTTTGTCCCTTAAATG 59.580 38.462 0.00 0.00 0.00 2.32
1411 1571 5.694458 CCGAAAAAGTTTGTCCCTTAAATGG 59.306 40.000 0.00 0.00 0.00 3.16
1414 1574 7.116233 CGAAAAAGTTTGTCCCTTAAATGGATG 59.884 37.037 0.00 0.00 33.65 3.51
1415 1575 6.994421 AAAGTTTGTCCCTTAAATGGATGT 57.006 33.333 0.00 0.00 33.65 3.06
1417 1577 8.664669 AAAGTTTGTCCCTTAAATGGATGTAT 57.335 30.769 0.00 0.00 33.65 2.29
1421 1581 9.057089 GTTTGTCCCTTAAATGGATGTATCTAG 57.943 37.037 0.00 0.00 33.65 2.43
1422 1582 6.769512 TGTCCCTTAAATGGATGTATCTAGC 58.230 40.000 0.00 0.00 33.65 3.42
1423 1583 6.174049 GTCCCTTAAATGGATGTATCTAGCC 58.826 44.000 0.00 0.00 33.65 3.93
1425 1585 6.213600 TCCCTTAAATGGATGTATCTAGCCTC 59.786 42.308 0.00 0.00 0.00 4.70
1426 1586 6.013379 CCCTTAAATGGATGTATCTAGCCTCA 60.013 42.308 0.00 0.00 0.00 3.86
1427 1587 7.453393 CCTTAAATGGATGTATCTAGCCTCAA 58.547 38.462 0.00 0.00 0.00 3.02
1428 1588 7.605691 CCTTAAATGGATGTATCTAGCCTCAAG 59.394 40.741 0.00 0.00 0.00 3.02
1429 1589 6.506538 AAATGGATGTATCTAGCCTCAAGT 57.493 37.500 0.00 0.00 0.00 3.16
1430 1590 6.506538 AATGGATGTATCTAGCCTCAAGTT 57.493 37.500 0.00 0.00 0.00 2.66
1431 1591 7.618019 AATGGATGTATCTAGCCTCAAGTTA 57.382 36.000 0.00 0.00 0.00 2.24
1434 1594 6.040955 TGGATGTATCTAGCCTCAAGTTAGTG 59.959 42.308 0.00 0.00 0.00 2.74
1436 1596 4.956700 TGTATCTAGCCTCAAGTTAGTGCT 59.043 41.667 0.00 0.00 36.11 4.40
1442 1602 5.523438 AGCCTCAAGTTAGTGCTAGATAC 57.477 43.478 0.00 0.00 0.00 2.24
1443 1603 4.956700 AGCCTCAAGTTAGTGCTAGATACA 59.043 41.667 0.00 0.00 0.00 2.29
1448 1608 7.256119 CCTCAAGTTAGTGCTAGATACATCCAT 60.256 40.741 0.00 0.00 0.00 3.41
1449 1609 8.023021 TCAAGTTAGTGCTAGATACATCCATT 57.977 34.615 0.00 0.00 0.00 3.16
1450 1610 8.486210 TCAAGTTAGTGCTAGATACATCCATTT 58.514 33.333 0.00 0.00 0.00 2.32
1451 1611 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
1452 1612 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
1453 1613 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
1454 1614 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
1455 1615 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
1456 1616 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
1457 1617 5.549228 TGCTAGATACATCCATTTGAGGGAT 59.451 40.000 0.00 0.00 45.98 3.85
1460 1620 7.768120 GCTAGATACATCCATTTGAGGGATAAG 59.232 40.741 0.00 0.00 43.24 1.73
1461 1621 6.479884 AGATACATCCATTTGAGGGATAAGC 58.520 40.000 0.00 0.00 43.24 3.09
1463 1623 5.134725 ACATCCATTTGAGGGATAAGCTT 57.865 39.130 3.48 3.48 43.24 3.74
1464 1624 4.891756 ACATCCATTTGAGGGATAAGCTTG 59.108 41.667 9.86 0.00 43.24 4.01
1466 1626 4.785301 TCCATTTGAGGGATAAGCTTGAG 58.215 43.478 9.86 0.00 0.00 3.02
1468 1628 4.578105 CCATTTGAGGGATAAGCTTGAGAC 59.422 45.833 9.86 0.00 0.00 3.36
1470 1630 4.908601 TTGAGGGATAAGCTTGAGACAA 57.091 40.909 9.86 5.50 0.00 3.18
1472 1632 3.202097 GAGGGATAAGCTTGAGACAAGC 58.798 50.000 23.31 23.31 43.31 4.01
1480 1640 2.654987 GCTTGAGACAAGCTTTTTCGG 58.345 47.619 23.42 0.00 40.01 4.30
1481 1641 2.290641 GCTTGAGACAAGCTTTTTCGGA 59.709 45.455 23.42 0.00 40.01 4.55
1482 1642 3.850010 GCTTGAGACAAGCTTTTTCGGAC 60.850 47.826 23.42 0.00 40.01 4.79
1483 1643 1.864711 TGAGACAAGCTTTTTCGGACG 59.135 47.619 0.00 0.00 0.00 4.79
1484 1644 1.194772 GAGACAAGCTTTTTCGGACGG 59.805 52.381 0.00 0.00 0.00 4.79
1485 1645 1.202604 AGACAAGCTTTTTCGGACGGA 60.203 47.619 0.00 0.00 0.00 4.69
1486 1646 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
1487 1647 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
1488 1648 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
1489 1649 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
1490 1650 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
1491 1651 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
1551 1711 2.959707 TCAAAAGGCACCCGTAATTTGT 59.040 40.909 0.00 0.00 0.00 2.83
1560 1720 4.686554 GCACCCGTAATTTGTTTTAATGCA 59.313 37.500 0.00 0.00 0.00 3.96
1687 1847 4.813296 AACCTTCTTTCGTTTGCTACTG 57.187 40.909 0.00 0.00 0.00 2.74
1701 1866 6.573725 CGTTTGCTACTGTTTTCTTATGTGAC 59.426 38.462 0.00 0.00 0.00 3.67
1805 1970 7.913674 AGTTCTGTAGAAGGAATGTGATTTC 57.086 36.000 0.00 0.00 34.27 2.17
1970 2135 7.974504 ACTAATATAGTGTATGACCAAAGGGG 58.025 38.462 0.00 0.00 39.31 4.79
2112 2280 3.942829 TCGAGCTGTCCATCAAAGAATT 58.057 40.909 0.00 0.00 0.00 2.17
2119 2287 7.769220 AGCTGTCCATCAAAGAATTAAGATTG 58.231 34.615 0.00 0.00 0.00 2.67
2134 2302 7.893124 ATTAAGATTGATCCAGAAACAGCAT 57.107 32.000 0.00 0.00 0.00 3.79
2135 2303 5.578005 AAGATTGATCCAGAAACAGCATG 57.422 39.130 0.00 0.00 46.00 4.06
2188 2356 5.499004 AACCAGCAAGGATTAGAACACTA 57.501 39.130 1.83 0.00 41.22 2.74
2192 2360 7.275920 ACCAGCAAGGATTAGAACACTATAAG 58.724 38.462 1.83 0.00 41.22 1.73
2367 2537 2.546778 TCTTTCCGTCATAATGTCGGC 58.453 47.619 9.64 0.00 46.05 5.54
2665 2838 8.856153 TTGTAAATTAGAAAGCCTGATACACA 57.144 30.769 0.00 0.00 0.00 3.72
2666 2839 9.461312 TTGTAAATTAGAAAGCCTGATACACAT 57.539 29.630 0.00 0.00 0.00 3.21
2853 3065 5.420725 ACAGAGTGCTACATTTACCATGA 57.579 39.130 0.00 0.00 0.00 3.07
2854 3066 5.178797 ACAGAGTGCTACATTTACCATGAC 58.821 41.667 0.00 0.00 0.00 3.06
2855 3067 5.046304 ACAGAGTGCTACATTTACCATGACT 60.046 40.000 0.00 0.00 0.00 3.41
2856 3068 6.154534 ACAGAGTGCTACATTTACCATGACTA 59.845 38.462 0.00 0.00 0.00 2.59
2857 3069 6.699204 CAGAGTGCTACATTTACCATGACTAG 59.301 42.308 0.00 0.00 0.00 2.57
2858 3070 5.360591 AGTGCTACATTTACCATGACTAGC 58.639 41.667 0.00 0.00 0.00 3.42
2859 3071 5.104941 AGTGCTACATTTACCATGACTAGCA 60.105 40.000 0.00 4.03 33.83 3.49
2860 3072 5.584649 GTGCTACATTTACCATGACTAGCAA 59.415 40.000 8.10 0.00 36.24 3.91
2861 3073 5.817296 TGCTACATTTACCATGACTAGCAAG 59.183 40.000 0.00 0.00 33.53 4.01
2862 3074 6.049149 GCTACATTTACCATGACTAGCAAGA 58.951 40.000 0.00 0.00 0.00 3.02
2863 3075 6.708054 GCTACATTTACCATGACTAGCAAGAT 59.292 38.462 0.00 0.00 0.00 2.40
2864 3076 6.932356 ACATTTACCATGACTAGCAAGATG 57.068 37.500 0.00 0.00 0.00 2.90
2865 3077 5.297776 ACATTTACCATGACTAGCAAGATGC 59.702 40.000 0.00 0.00 45.46 3.91
2866 3078 2.338577 ACCATGACTAGCAAGATGCC 57.661 50.000 0.00 0.00 46.52 4.40
2867 3079 1.133976 ACCATGACTAGCAAGATGCCC 60.134 52.381 0.00 0.00 46.52 5.36
2868 3080 1.224075 CATGACTAGCAAGATGCCCG 58.776 55.000 0.00 0.00 46.52 6.13
2869 3081 0.833287 ATGACTAGCAAGATGCCCGT 59.167 50.000 0.00 0.00 46.52 5.28
2870 3082 0.108186 TGACTAGCAAGATGCCCGTG 60.108 55.000 0.00 0.00 46.52 4.94
2871 3083 1.432270 GACTAGCAAGATGCCCGTGC 61.432 60.000 6.11 6.11 46.52 5.34
2892 3104 3.084579 GCACGGAGCGTCAAGATG 58.915 61.111 0.00 0.00 38.32 2.90
2893 3105 3.084579 CACGGAGCGTCAAGATGC 58.915 61.111 6.15 6.15 38.32 3.91
2894 3106 1.737735 CACGGAGCGTCAAGATGCA 60.738 57.895 15.87 0.00 45.42 3.96
2895 3107 1.086067 CACGGAGCGTCAAGATGCAT 61.086 55.000 15.87 0.00 45.42 3.96
2896 3108 0.391661 ACGGAGCGTCAAGATGCATT 60.392 50.000 15.87 0.00 45.42 3.56
2897 3109 0.729116 CGGAGCGTCAAGATGCATTT 59.271 50.000 15.87 0.00 45.42 2.32
2898 3110 1.131126 CGGAGCGTCAAGATGCATTTT 59.869 47.619 15.87 0.00 45.42 1.82
2899 3111 2.414559 CGGAGCGTCAAGATGCATTTTT 60.415 45.455 15.87 0.00 45.42 1.94
2933 3145 2.231964 ACATGTTGTGATTGACCCATGC 59.768 45.455 0.00 0.00 36.82 4.06
2934 3146 0.880441 TGTTGTGATTGACCCATGCG 59.120 50.000 0.00 0.00 0.00 4.73
2935 3147 0.171007 GTTGTGATTGACCCATGCGG 59.829 55.000 0.00 0.00 37.81 5.69
2936 3148 0.037447 TTGTGATTGACCCATGCGGA 59.963 50.000 7.17 0.00 34.64 5.54
2937 3149 0.037447 TGTGATTGACCCATGCGGAA 59.963 50.000 7.17 0.00 34.64 4.30
2938 3150 0.734889 GTGATTGACCCATGCGGAAG 59.265 55.000 7.17 0.00 34.64 3.46
2939 3151 0.327924 TGATTGACCCATGCGGAAGT 59.672 50.000 7.17 0.00 34.64 3.01
2940 3152 1.557371 TGATTGACCCATGCGGAAGTA 59.443 47.619 7.17 0.00 34.64 2.24
2941 3153 2.026729 TGATTGACCCATGCGGAAGTAA 60.027 45.455 7.17 0.00 34.64 2.24
2942 3154 2.799126 TTGACCCATGCGGAAGTAAT 57.201 45.000 7.17 0.00 34.64 1.89
2943 3155 2.325583 TGACCCATGCGGAAGTAATC 57.674 50.000 7.17 0.00 34.64 1.75
2944 3156 1.134220 TGACCCATGCGGAAGTAATCC 60.134 52.381 7.17 0.00 45.57 3.01
2945 3157 0.182775 ACCCATGCGGAAGTAATCCC 59.817 55.000 7.17 0.00 46.39 3.85
2946 3158 0.182537 CCCATGCGGAAGTAATCCCA 59.817 55.000 0.00 0.00 46.39 4.37
2947 3159 1.202927 CCCATGCGGAAGTAATCCCAT 60.203 52.381 0.00 0.00 46.39 4.00
2948 3160 1.881973 CCATGCGGAAGTAATCCCATG 59.118 52.381 14.12 14.12 46.39 3.66
2949 3161 2.575532 CATGCGGAAGTAATCCCATGT 58.424 47.619 13.38 0.00 46.39 3.21
2950 3162 2.036958 TGCGGAAGTAATCCCATGTG 57.963 50.000 0.00 0.00 46.39 3.21
2951 3163 1.280710 TGCGGAAGTAATCCCATGTGT 59.719 47.619 0.00 0.00 46.39 3.72
2952 3164 2.502130 TGCGGAAGTAATCCCATGTGTA 59.498 45.455 0.00 0.00 46.39 2.90
2953 3165 3.055021 TGCGGAAGTAATCCCATGTGTAA 60.055 43.478 0.00 0.00 46.39 2.41
2954 3166 3.942748 GCGGAAGTAATCCCATGTGTAAA 59.057 43.478 0.00 0.00 46.39 2.01
2955 3167 4.396790 GCGGAAGTAATCCCATGTGTAAAA 59.603 41.667 0.00 0.00 46.39 1.52
2956 3168 5.106078 GCGGAAGTAATCCCATGTGTAAAAA 60.106 40.000 0.00 0.00 46.39 1.94
2957 3169 6.319399 CGGAAGTAATCCCATGTGTAAAAAC 58.681 40.000 0.00 0.00 46.39 2.43
2958 3170 6.150474 CGGAAGTAATCCCATGTGTAAAAACT 59.850 38.462 0.00 0.00 46.39 2.66
2959 3171 7.334921 CGGAAGTAATCCCATGTGTAAAAACTA 59.665 37.037 0.00 0.00 46.39 2.24
2960 3172 9.016438 GGAAGTAATCCCATGTGTAAAAACTAA 57.984 33.333 0.00 0.00 43.00 2.24
2963 3175 9.747898 AGTAATCCCATGTGTAAAAACTAATGA 57.252 29.630 0.00 0.00 0.00 2.57
2989 3201 5.373222 TCTCGAGAAAGAGAAGAGATAGGG 58.627 45.833 14.01 0.00 43.56 3.53
2990 3202 5.104277 TCTCGAGAAAGAGAAGAGATAGGGT 60.104 44.000 14.01 0.00 43.56 4.34
2991 3203 4.884744 TCGAGAAAGAGAAGAGATAGGGTG 59.115 45.833 0.00 0.00 0.00 4.61
2992 3204 4.884744 CGAGAAAGAGAAGAGATAGGGTGA 59.115 45.833 0.00 0.00 0.00 4.02
2993 3205 5.008613 CGAGAAAGAGAAGAGATAGGGTGAG 59.991 48.000 0.00 0.00 0.00 3.51
2994 3206 5.208121 AGAAAGAGAAGAGATAGGGTGAGG 58.792 45.833 0.00 0.00 0.00 3.86
2995 3207 4.890499 AAGAGAAGAGATAGGGTGAGGA 57.110 45.455 0.00 0.00 0.00 3.71
2996 3208 4.453480 AGAGAAGAGATAGGGTGAGGAG 57.547 50.000 0.00 0.00 0.00 3.69
2997 3209 3.140144 AGAGAAGAGATAGGGTGAGGAGG 59.860 52.174 0.00 0.00 0.00 4.30
2998 3210 3.135279 AGAAGAGATAGGGTGAGGAGGA 58.865 50.000 0.00 0.00 0.00 3.71
2999 3211 3.140144 AGAAGAGATAGGGTGAGGAGGAG 59.860 52.174 0.00 0.00 0.00 3.69
3000 3212 2.509243 AGAGATAGGGTGAGGAGGAGT 58.491 52.381 0.00 0.00 0.00 3.85
3001 3213 2.176798 AGAGATAGGGTGAGGAGGAGTG 59.823 54.545 0.00 0.00 0.00 3.51
3002 3214 1.933765 AGATAGGGTGAGGAGGAGTGT 59.066 52.381 0.00 0.00 0.00 3.55
3003 3215 3.132056 AGATAGGGTGAGGAGGAGTGTA 58.868 50.000 0.00 0.00 0.00 2.90
3004 3216 3.532232 AGATAGGGTGAGGAGGAGTGTAA 59.468 47.826 0.00 0.00 0.00 2.41
3005 3217 2.715763 AGGGTGAGGAGGAGTGTAAA 57.284 50.000 0.00 0.00 0.00 2.01
3006 3218 2.986050 AGGGTGAGGAGGAGTGTAAAA 58.014 47.619 0.00 0.00 0.00 1.52
3007 3219 3.323775 AGGGTGAGGAGGAGTGTAAAAA 58.676 45.455 0.00 0.00 0.00 1.94
3008 3220 3.072622 AGGGTGAGGAGGAGTGTAAAAAC 59.927 47.826 0.00 0.00 0.00 2.43
3009 3221 3.409570 GGTGAGGAGGAGTGTAAAAACC 58.590 50.000 0.00 0.00 0.00 3.27
3010 3222 3.409570 GTGAGGAGGAGTGTAAAAACCC 58.590 50.000 0.00 0.00 0.00 4.11
3011 3223 3.050089 TGAGGAGGAGTGTAAAAACCCA 58.950 45.455 0.00 0.00 0.00 4.51
3012 3224 3.655777 TGAGGAGGAGTGTAAAAACCCAT 59.344 43.478 0.00 0.00 0.00 4.00
3013 3225 4.010349 GAGGAGGAGTGTAAAAACCCATG 58.990 47.826 0.00 0.00 0.00 3.66
3014 3226 2.492088 GGAGGAGTGTAAAAACCCATGC 59.508 50.000 0.00 0.00 0.00 4.06
3015 3227 2.159382 AGGAGTGTAAAAACCCATGCG 58.841 47.619 0.00 0.00 0.00 4.73
3016 3228 1.201414 GGAGTGTAAAAACCCATGCGG 59.799 52.381 0.00 0.00 37.81 5.69
3017 3229 0.601057 AGTGTAAAAACCCATGCGGC 59.399 50.000 0.00 0.00 33.26 6.53
3018 3230 0.389296 GTGTAAAAACCCATGCGGCC 60.389 55.000 0.00 0.00 33.26 6.13
3019 3231 0.827925 TGTAAAAACCCATGCGGCCA 60.828 50.000 2.24 0.00 33.26 5.36
3020 3232 0.389296 GTAAAAACCCATGCGGCCAC 60.389 55.000 2.24 0.00 33.26 5.01
3021 3233 1.536943 TAAAAACCCATGCGGCCACC 61.537 55.000 2.24 0.00 33.26 4.61
3022 3234 4.612279 AAACCCATGCGGCCACCA 62.612 61.111 2.24 0.00 33.26 4.17
3023 3235 3.903281 AAACCCATGCGGCCACCAT 62.903 57.895 2.24 1.01 33.26 3.55
3033 3245 4.023137 GCCACCATGCCAGATTGT 57.977 55.556 0.00 0.00 0.00 2.71
3034 3246 2.279842 GCCACCATGCCAGATTGTT 58.720 52.632 0.00 0.00 0.00 2.83
3035 3247 0.174162 GCCACCATGCCAGATTGTTC 59.826 55.000 0.00 0.00 0.00 3.18
3036 3248 0.819582 CCACCATGCCAGATTGTTCC 59.180 55.000 0.00 0.00 0.00 3.62
3037 3249 1.548081 CACCATGCCAGATTGTTCCA 58.452 50.000 0.00 0.00 0.00 3.53
3038 3250 1.475280 CACCATGCCAGATTGTTCCAG 59.525 52.381 0.00 0.00 0.00 3.86
3039 3251 1.355381 ACCATGCCAGATTGTTCCAGA 59.645 47.619 0.00 0.00 0.00 3.86
3040 3252 2.022195 CCATGCCAGATTGTTCCAGAG 58.978 52.381 0.00 0.00 0.00 3.35
3041 3253 2.022195 CATGCCAGATTGTTCCAGAGG 58.978 52.381 0.00 0.00 0.00 3.69
3042 3254 1.067295 TGCCAGATTGTTCCAGAGGT 58.933 50.000 0.00 0.00 0.00 3.85
3043 3255 1.425066 TGCCAGATTGTTCCAGAGGTT 59.575 47.619 0.00 0.00 0.00 3.50
3044 3256 2.158475 TGCCAGATTGTTCCAGAGGTTT 60.158 45.455 0.00 0.00 0.00 3.27
3045 3257 2.489722 GCCAGATTGTTCCAGAGGTTTC 59.510 50.000 0.00 0.00 0.00 2.78
3046 3258 3.084786 CCAGATTGTTCCAGAGGTTTCC 58.915 50.000 0.00 0.00 0.00 3.13
3047 3259 3.245052 CCAGATTGTTCCAGAGGTTTCCT 60.245 47.826 0.00 0.00 36.03 3.36
3048 3260 4.401925 CAGATTGTTCCAGAGGTTTCCTT 58.598 43.478 0.00 0.00 31.76 3.36
3049 3261 4.829492 CAGATTGTTCCAGAGGTTTCCTTT 59.171 41.667 0.00 0.00 31.76 3.11
3050 3262 5.302823 CAGATTGTTCCAGAGGTTTCCTTTT 59.697 40.000 0.00 0.00 31.76 2.27
3051 3263 5.899547 AGATTGTTCCAGAGGTTTCCTTTTT 59.100 36.000 0.00 0.00 31.76 1.94
3085 3297 4.202441 CAATGAGGTTGTGGGAGATAAGG 58.798 47.826 0.00 0.00 33.01 2.69
3086 3298 3.199442 TGAGGTTGTGGGAGATAAGGA 57.801 47.619 0.00 0.00 0.00 3.36
3087 3299 3.736094 TGAGGTTGTGGGAGATAAGGAT 58.264 45.455 0.00 0.00 0.00 3.24
3088 3300 3.455910 TGAGGTTGTGGGAGATAAGGATG 59.544 47.826 0.00 0.00 0.00 3.51
3089 3301 3.711704 GAGGTTGTGGGAGATAAGGATGA 59.288 47.826 0.00 0.00 0.00 2.92
3090 3302 4.111577 AGGTTGTGGGAGATAAGGATGAA 58.888 43.478 0.00 0.00 0.00 2.57
3091 3303 4.080299 AGGTTGTGGGAGATAAGGATGAAC 60.080 45.833 0.00 0.00 0.00 3.18
3092 3304 4.324254 GGTTGTGGGAGATAAGGATGAACA 60.324 45.833 0.00 0.00 0.00 3.18
3093 3305 5.253330 GTTGTGGGAGATAAGGATGAACAA 58.747 41.667 0.00 0.00 0.00 2.83
3094 3306 5.102953 TGTGGGAGATAAGGATGAACAAG 57.897 43.478 0.00 0.00 0.00 3.16
3095 3307 4.080356 TGTGGGAGATAAGGATGAACAAGG 60.080 45.833 0.00 0.00 0.00 3.61
3096 3308 3.459598 TGGGAGATAAGGATGAACAAGGG 59.540 47.826 0.00 0.00 0.00 3.95
3097 3309 3.716872 GGGAGATAAGGATGAACAAGGGA 59.283 47.826 0.00 0.00 0.00 4.20
3098 3310 4.166144 GGGAGATAAGGATGAACAAGGGAA 59.834 45.833 0.00 0.00 0.00 3.97
3099 3311 5.372373 GGAGATAAGGATGAACAAGGGAAG 58.628 45.833 0.00 0.00 0.00 3.46
3100 3312 5.372373 GAGATAAGGATGAACAAGGGAAGG 58.628 45.833 0.00 0.00 0.00 3.46
3101 3313 2.222227 AAGGATGAACAAGGGAAGGC 57.778 50.000 0.00 0.00 0.00 4.35
3102 3314 0.332972 AGGATGAACAAGGGAAGGCC 59.667 55.000 0.00 0.00 0.00 5.19
3103 3315 0.332972 GGATGAACAAGGGAAGGCCT 59.667 55.000 0.00 0.00 0.00 5.19
3104 3316 1.272704 GGATGAACAAGGGAAGGCCTT 60.273 52.381 20.65 20.65 0.00 4.35
3105 3317 2.025321 GGATGAACAAGGGAAGGCCTTA 60.025 50.000 20.54 0.00 0.00 2.69
3106 3318 3.373110 GGATGAACAAGGGAAGGCCTTAT 60.373 47.826 20.54 4.41 0.00 1.73
3107 3319 3.366052 TGAACAAGGGAAGGCCTTATC 57.634 47.619 20.54 13.81 0.00 1.75
3108 3320 2.919602 TGAACAAGGGAAGGCCTTATCT 59.080 45.455 20.54 15.86 0.00 1.98
3109 3321 3.282885 GAACAAGGGAAGGCCTTATCTG 58.717 50.000 20.54 15.47 0.00 2.90
3110 3322 1.064389 ACAAGGGAAGGCCTTATCTGC 60.064 52.381 20.54 5.12 0.00 4.26
3111 3323 1.064463 CAAGGGAAGGCCTTATCTGCA 60.064 52.381 20.54 0.00 0.00 4.41
3112 3324 1.298953 AGGGAAGGCCTTATCTGCAA 58.701 50.000 20.54 0.00 0.00 4.08
3113 3325 1.640670 AGGGAAGGCCTTATCTGCAAA 59.359 47.619 20.54 0.00 0.00 3.68
3114 3326 2.245806 AGGGAAGGCCTTATCTGCAAAT 59.754 45.455 20.54 0.00 0.00 2.32
3115 3327 2.363359 GGGAAGGCCTTATCTGCAAATG 59.637 50.000 20.54 0.00 0.00 2.32
3116 3328 3.026694 GGAAGGCCTTATCTGCAAATGT 58.973 45.455 20.54 0.00 0.00 2.71
3117 3329 3.181483 GGAAGGCCTTATCTGCAAATGTG 60.181 47.826 20.54 0.00 0.00 3.21
3118 3330 2.381911 AGGCCTTATCTGCAAATGTGG 58.618 47.619 0.00 0.00 0.00 4.17
3119 3331 2.025037 AGGCCTTATCTGCAAATGTGGA 60.025 45.455 0.00 0.00 0.00 4.02
3120 3332 2.360165 GGCCTTATCTGCAAATGTGGAG 59.640 50.000 0.00 0.00 44.23 3.86
3125 3337 2.775911 TCTGCAAATGTGGAGAGAGG 57.224 50.000 2.39 0.00 46.25 3.69
3126 3338 1.980765 TCTGCAAATGTGGAGAGAGGT 59.019 47.619 2.39 0.00 46.25 3.85
3127 3339 2.082231 CTGCAAATGTGGAGAGAGGTG 58.918 52.381 0.00 0.00 45.65 4.00
3128 3340 0.807496 GCAAATGTGGAGAGAGGTGC 59.193 55.000 0.00 0.00 0.00 5.01
3129 3341 1.883638 GCAAATGTGGAGAGAGGTGCA 60.884 52.381 0.00 0.00 0.00 4.57
3130 3342 2.082231 CAAATGTGGAGAGAGGTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
3131 3343 0.617413 AATGTGGAGAGAGGTGCAGG 59.383 55.000 0.00 0.00 0.00 4.85
3132 3344 0.546267 ATGTGGAGAGAGGTGCAGGT 60.546 55.000 0.00 0.00 0.00 4.00
3133 3345 0.114364 TGTGGAGAGAGGTGCAGGTA 59.886 55.000 0.00 0.00 0.00 3.08
3134 3346 1.273267 TGTGGAGAGAGGTGCAGGTAT 60.273 52.381 0.00 0.00 0.00 2.73
3135 3347 1.410882 GTGGAGAGAGGTGCAGGTATC 59.589 57.143 0.00 0.00 0.00 2.24
3136 3348 1.289231 TGGAGAGAGGTGCAGGTATCT 59.711 52.381 0.00 0.00 0.00 1.98
3137 3349 2.292521 TGGAGAGAGGTGCAGGTATCTT 60.293 50.000 0.00 0.00 0.00 2.40
3138 3350 2.769095 GGAGAGAGGTGCAGGTATCTTT 59.231 50.000 0.00 0.00 0.00 2.52
3139 3351 3.198853 GGAGAGAGGTGCAGGTATCTTTT 59.801 47.826 0.00 0.00 0.00 2.27
3140 3352 4.323868 GGAGAGAGGTGCAGGTATCTTTTT 60.324 45.833 0.00 0.00 0.00 1.94
3141 3353 4.583871 AGAGAGGTGCAGGTATCTTTTTG 58.416 43.478 0.00 0.00 0.00 2.44
3142 3354 3.084786 AGAGGTGCAGGTATCTTTTTGC 58.915 45.455 0.00 0.00 37.09 3.68
3143 3355 2.819608 GAGGTGCAGGTATCTTTTTGCA 59.180 45.455 0.00 0.00 43.62 4.08
3144 3356 3.230134 AGGTGCAGGTATCTTTTTGCAA 58.770 40.909 0.00 0.00 46.80 4.08
3145 3357 3.640967 AGGTGCAGGTATCTTTTTGCAAA 59.359 39.130 8.05 8.05 46.80 3.68
3146 3358 4.100808 AGGTGCAGGTATCTTTTTGCAAAA 59.899 37.500 20.46 20.46 46.80 2.44
3147 3359 4.996758 GGTGCAGGTATCTTTTTGCAAAAT 59.003 37.500 24.39 12.94 46.80 1.82
3148 3360 5.469760 GGTGCAGGTATCTTTTTGCAAAATT 59.530 36.000 24.39 14.72 46.80 1.82
3149 3361 6.365050 GTGCAGGTATCTTTTTGCAAAATTG 58.635 36.000 24.39 19.07 46.80 2.32
3165 3377 6.790285 CAAAATTGCCATAGTTTGCTTTCT 57.210 33.333 0.00 0.00 0.00 2.52
3166 3378 7.887996 CAAAATTGCCATAGTTTGCTTTCTA 57.112 32.000 0.00 0.00 0.00 2.10
3167 3379 8.483307 CAAAATTGCCATAGTTTGCTTTCTAT 57.517 30.769 0.00 0.00 0.00 1.98
3168 3380 8.598075 CAAAATTGCCATAGTTTGCTTTCTATC 58.402 33.333 0.00 0.00 0.00 2.08
3169 3381 5.835113 TTGCCATAGTTTGCTTTCTATCC 57.165 39.130 0.00 0.00 0.00 2.59
3170 3382 3.876914 TGCCATAGTTTGCTTTCTATCCG 59.123 43.478 0.00 0.00 0.00 4.18
3171 3383 3.877508 GCCATAGTTTGCTTTCTATCCGT 59.122 43.478 0.00 0.00 0.00 4.69
3172 3384 4.024809 GCCATAGTTTGCTTTCTATCCGTC 60.025 45.833 0.00 0.00 0.00 4.79
3173 3385 5.116180 CCATAGTTTGCTTTCTATCCGTCA 58.884 41.667 0.00 0.00 0.00 4.35
3174 3386 5.235186 CCATAGTTTGCTTTCTATCCGTCAG 59.765 44.000 0.00 0.00 0.00 3.51
3175 3387 4.537135 AGTTTGCTTTCTATCCGTCAGA 57.463 40.909 0.00 0.00 0.00 3.27
3176 3388 5.091261 AGTTTGCTTTCTATCCGTCAGAT 57.909 39.130 0.00 0.00 39.15 2.90
3177 3389 6.222038 AGTTTGCTTTCTATCCGTCAGATA 57.778 37.500 0.00 0.00 36.33 1.98
3178 3390 6.821388 AGTTTGCTTTCTATCCGTCAGATAT 58.179 36.000 0.00 0.00 36.84 1.63
3179 3391 7.952671 AGTTTGCTTTCTATCCGTCAGATATA 58.047 34.615 0.00 0.00 36.84 0.86
3180 3392 8.085296 AGTTTGCTTTCTATCCGTCAGATATAG 58.915 37.037 0.00 0.00 36.84 1.31
3181 3393 7.761038 TTGCTTTCTATCCGTCAGATATAGA 57.239 36.000 0.00 0.00 36.84 1.98
3182 3394 7.946381 TGCTTTCTATCCGTCAGATATAGAT 57.054 36.000 0.00 0.00 36.84 1.98
3183 3395 7.990917 TGCTTTCTATCCGTCAGATATAGATC 58.009 38.462 0.00 0.00 36.84 2.75
3184 3396 7.611855 TGCTTTCTATCCGTCAGATATAGATCA 59.388 37.037 0.00 0.00 36.84 2.92
3185 3397 8.462811 GCTTTCTATCCGTCAGATATAGATCAA 58.537 37.037 0.00 0.00 36.84 2.57
3188 3400 7.975750 TCTATCCGTCAGATATAGATCAAACG 58.024 38.462 14.13 14.13 39.79 3.60
3190 3402 5.122512 CCGTCAGATATAGATCAAACGGT 57.877 43.478 24.24 0.00 46.67 4.83
3191 3403 5.154932 CCGTCAGATATAGATCAAACGGTC 58.845 45.833 24.24 1.25 46.67 4.79
3192 3404 5.048643 CCGTCAGATATAGATCAAACGGTCT 60.049 44.000 24.24 0.00 46.67 3.85
3193 3405 6.148976 CCGTCAGATATAGATCAAACGGTCTA 59.851 42.308 24.24 0.00 46.67 2.59
3194 3406 7.148222 CCGTCAGATATAGATCAAACGGTCTAT 60.148 40.741 24.24 1.22 46.67 1.98
3195 3407 7.906010 CGTCAGATATAGATCAAACGGTCTATC 59.094 40.741 13.56 0.00 38.33 2.08
3196 3408 8.952278 GTCAGATATAGATCAAACGGTCTATCT 58.048 37.037 0.00 3.32 38.33 1.98
3197 3409 9.521841 TCAGATATAGATCAAACGGTCTATCTT 57.478 33.333 3.13 0.00 38.33 2.40
3198 3410 9.566530 CAGATATAGATCAAACGGTCTATCTTG 57.433 37.037 3.13 0.00 38.33 3.02
3199 3411 8.247562 AGATATAGATCAAACGGTCTATCTTGC 58.752 37.037 3.13 0.00 38.33 4.01
3200 3412 4.471904 AGATCAAACGGTCTATCTTGCA 57.528 40.909 0.00 0.00 0.00 4.08
3201 3413 4.832248 AGATCAAACGGTCTATCTTGCAA 58.168 39.130 0.00 0.00 0.00 4.08
3202 3414 4.872691 AGATCAAACGGTCTATCTTGCAAG 59.127 41.667 20.81 20.81 0.00 4.01
3203 3415 4.265904 TCAAACGGTCTATCTTGCAAGA 57.734 40.909 30.23 30.23 39.78 3.02
3204 3416 4.832248 TCAAACGGTCTATCTTGCAAGAT 58.168 39.130 36.84 36.84 46.85 2.40
3205 3417 4.631377 TCAAACGGTCTATCTTGCAAGATG 59.369 41.667 39.83 30.43 45.01 2.90
3206 3418 3.185246 ACGGTCTATCTTGCAAGATGG 57.815 47.619 39.83 37.30 45.01 3.51
3207 3419 1.869767 CGGTCTATCTTGCAAGATGGC 59.130 52.381 39.83 31.62 45.01 4.40
3208 3420 2.742856 CGGTCTATCTTGCAAGATGGCA 60.743 50.000 39.83 26.99 45.01 4.92
3209 3421 2.877168 GGTCTATCTTGCAAGATGGCAG 59.123 50.000 39.83 31.27 45.01 4.85
3210 3422 2.877168 GTCTATCTTGCAAGATGGCAGG 59.123 50.000 39.83 26.22 45.01 4.85
3211 3423 1.607628 CTATCTTGCAAGATGGCAGGC 59.392 52.381 39.83 0.00 45.01 4.85
3212 3424 0.323999 ATCTTGCAAGATGGCAGGCA 60.324 50.000 35.32 10.88 45.88 4.75
3213 3425 1.214589 CTTGCAAGATGGCAGGCAC 59.785 57.895 22.31 0.00 45.88 5.01
3214 3426 1.529152 CTTGCAAGATGGCAGGCACA 61.529 55.000 22.31 0.00 45.88 4.57
3215 3427 1.808531 TTGCAAGATGGCAGGCACAC 61.809 55.000 0.00 0.00 45.88 3.82
3216 3428 2.998279 GCAAGATGGCAGGCACACC 61.998 63.158 0.00 0.00 0.00 4.16
3217 3429 1.604308 CAAGATGGCAGGCACACCA 60.604 57.895 0.00 0.00 41.01 4.17
3220 3432 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
3221 3433 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
3222 3434 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
3223 3435 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
3224 3436 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
3225 3437 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
3226 3438 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
3227 3439 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
3228 3440 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
3229 3441 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
3230 3442 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
3231 3443 1.733912 CACACCATCATCACCAACTCG 59.266 52.381 0.00 0.00 0.00 4.18
3232 3444 1.339055 ACACCATCATCACCAACTCGG 60.339 52.381 0.00 0.00 42.50 4.63
3575 3787 3.334413 GGGACCTTAACTTGCGGTT 57.666 52.632 0.00 0.81 41.54 4.44
3783 3995 7.624360 TGTTCCAACATTACCAGTATCATTC 57.376 36.000 0.00 0.00 33.17 2.67
3790 4002 9.334947 CAACATTACCAGTATCATTCTCTGAAT 57.665 33.333 0.00 0.00 37.44 2.57
3803 4015 7.698912 TCATTCTCTGAATTTAGGAAAGGGAA 58.301 34.615 0.00 0.00 32.20 3.97
3808 4020 9.853177 TCTCTGAATTTAGGAAAGGGAATATTC 57.147 33.333 6.93 6.93 0.00 1.75
3864 4077 3.764237 TCGTTTCTACTGGAAAGCCTT 57.236 42.857 0.00 0.00 43.59 4.35
3919 4133 0.534877 TGTGGAGAGCATTGCACGTT 60.535 50.000 11.91 0.00 41.69 3.99
3998 4212 3.914426 TGCAAGATAGGGAGTCCTTTC 57.086 47.619 9.58 3.91 41.56 2.62
4013 5861 6.094186 GGAGTCCTTTCTGCAACTAAATAAGG 59.906 42.308 0.41 0.00 33.61 2.69
4073 5921 8.888579 AACCTGAGATATATAACGTTGGAAAG 57.111 34.615 11.99 0.00 0.00 2.62
4074 5922 7.442656 ACCTGAGATATATAACGTTGGAAAGG 58.557 38.462 11.99 7.79 37.79 3.11
4075 5923 7.289317 ACCTGAGATATATAACGTTGGAAAGGA 59.711 37.037 11.99 0.00 35.31 3.36
4076 5924 8.314751 CCTGAGATATATAACGTTGGAAAGGAT 58.685 37.037 11.99 0.00 35.31 3.24
4100 5948 7.320443 TCCAATACATTAATCTGAGTTGTGC 57.680 36.000 0.00 0.00 0.00 4.57
4107 5955 7.765307 ACATTAATCTGAGTTGTGCCATAAAG 58.235 34.615 0.00 0.00 0.00 1.85
4113 5961 4.397420 TGAGTTGTGCCATAAAGATGTGT 58.603 39.130 0.00 0.00 0.00 3.72
4135 5992 9.539825 TGTGTTTGCATTATTTTGATGTTTAGT 57.460 25.926 0.00 0.00 0.00 2.24
4140 5997 9.755804 TTGCATTATTTTGATGTTTAGTTGTGA 57.244 25.926 0.00 0.00 0.00 3.58
4148 6005 6.403866 TGATGTTTAGTTGTGAAATTGGCT 57.596 33.333 0.00 0.00 0.00 4.75
4151 6008 8.417106 TGATGTTTAGTTGTGAAATTGGCTTTA 58.583 29.630 0.00 0.00 0.00 1.85
4164 6021 8.646900 TGAAATTGGCTTTAATGGTTTACTTCT 58.353 29.630 0.00 0.00 0.00 2.85
4166 6023 7.775053 ATTGGCTTTAATGGTTTACTTCTCA 57.225 32.000 0.00 0.00 0.00 3.27
4188 6045 8.768397 TCTCAAAGTTATCCCTAGCAATTCTTA 58.232 33.333 0.00 0.00 0.00 2.10
4191 6048 9.178758 CAAAGTTATCCCTAGCAATTCTTAAGT 57.821 33.333 1.63 0.00 0.00 2.24
4192 6049 9.755122 AAAGTTATCCCTAGCAATTCTTAAGTT 57.245 29.630 1.63 0.00 0.00 2.66
4193 6050 8.966069 AGTTATCCCTAGCAATTCTTAAGTTC 57.034 34.615 1.63 0.00 0.00 3.01
4194 6051 8.548877 AGTTATCCCTAGCAATTCTTAAGTTCA 58.451 33.333 1.63 0.00 0.00 3.18
4195 6052 9.174166 GTTATCCCTAGCAATTCTTAAGTTCAA 57.826 33.333 1.63 0.00 0.00 2.69
4196 6053 9.920946 TTATCCCTAGCAATTCTTAAGTTCAAT 57.079 29.630 1.63 0.00 0.00 2.57
4198 6055 8.281212 TCCCTAGCAATTCTTAAGTTCAATTC 57.719 34.615 1.63 0.00 0.00 2.17
4199 6056 8.109634 TCCCTAGCAATTCTTAAGTTCAATTCT 58.890 33.333 1.63 4.55 0.00 2.40
4200 6057 8.186821 CCCTAGCAATTCTTAAGTTCAATTCTG 58.813 37.037 1.63 0.00 0.00 3.02
4218 6155 2.622942 TCTGTGCCCACTTGATTTGTTC 59.377 45.455 0.00 0.00 0.00 3.18
4219 6156 2.361757 CTGTGCCCACTTGATTTGTTCA 59.638 45.455 0.00 0.00 0.00 3.18
4233 6172 6.821160 TTGATTTGTTCAAAGGGAAAAGTTCC 59.179 34.615 4.37 0.00 44.01 3.62
4256 6195 5.160607 TGGTAGTATGGAAGTTTCAGTGG 57.839 43.478 0.00 0.00 0.00 4.00
4263 6202 2.167487 TGGAAGTTTCAGTGGCCAAAAC 59.833 45.455 19.57 19.57 33.98 2.43
4271 6210 1.555967 AGTGGCCAAAACACTGTTGT 58.444 45.000 7.24 0.00 46.67 3.32
4471 6412 2.642427 TCCAACATAGTACGACCGCTA 58.358 47.619 0.00 0.00 0.00 4.26
4479 6420 0.859232 GTACGACCGCTATGCAATGG 59.141 55.000 0.00 0.00 0.00 3.16
4507 6448 7.017055 GCTGGACAAATATTTCAAATGTTTGC 58.983 34.615 24.55 18.53 38.05 3.68
4589 6530 3.362870 AAGGCTACTACGACAGGTACT 57.637 47.619 0.00 0.00 43.88 2.73
4786 6730 2.480419 CGAGTGTGAGGTGAACAAATCC 59.520 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.914097 GCAGCACCAAGGCCAAGT 60.914 61.111 5.01 0.00 0.00 3.16
44 45 2.641815 AGACTGGAGAGAAATGCCAAGT 59.358 45.455 0.00 0.00 0.00 3.16
52 53 2.039084 GGCCAAGAAGACTGGAGAGAAA 59.961 50.000 0.00 0.00 0.00 2.52
120 121 2.341875 CCAACACCATGCGCCATCA 61.342 57.895 4.18 0.00 0.00 3.07
150 151 2.113139 CAACCGGAACCAGCCAGT 59.887 61.111 9.46 0.00 0.00 4.00
175 176 1.415672 TTCTCCCGCACTCCAAACCT 61.416 55.000 0.00 0.00 0.00 3.50
283 314 1.291588 CTGCTGCCTGAACGAGTCT 59.708 57.895 0.00 0.00 0.00 3.24
291 322 4.299547 AACGACGCTGCTGCCTGA 62.300 61.111 10.24 0.00 35.36 3.86
308 339 2.954684 AAGAAGGGATGCGACGCCA 61.955 57.895 18.69 5.87 0.00 5.69
330 361 2.738521 CGCGTACCAAGCAGCACT 60.739 61.111 0.00 0.00 34.19 4.40
348 379 3.036429 GCCCGAGGCTCCAATCTGT 62.036 63.158 9.32 0.00 46.69 3.41
413 444 0.814010 AACGGCAGCTCGACAAAAGT 60.814 50.000 9.87 0.00 0.00 2.66
437 468 7.956943 CGCAAAAGAAAAAGAAGAAACAAATGT 59.043 29.630 0.00 0.00 0.00 2.71
462 493 3.373020 GTGAACAGCACATCAAGCG 57.627 52.632 0.00 0.00 46.91 4.68
476 507 3.265737 ACACATAGCATTACTGGGGTGAA 59.734 43.478 0.00 0.00 32.53 3.18
479 510 3.181469 CGTACACATAGCATTACTGGGGT 60.181 47.826 0.00 0.00 0.00 4.95
486 517 4.185394 CCAACACCGTACACATAGCATTA 58.815 43.478 0.00 0.00 0.00 1.90
597 628 4.454728 TGGGCATAACTCTTTGCATTTC 57.545 40.909 0.00 0.00 40.66 2.17
612 643 0.681175 GTGGAAAAGCACTTGGGCAT 59.319 50.000 0.00 0.00 35.83 4.40
614 645 0.463620 TTGTGGAAAAGCACTTGGGC 59.536 50.000 0.00 0.00 0.00 5.36
615 646 2.548493 CCATTGTGGAAAAGCACTTGGG 60.548 50.000 0.00 0.00 40.96 4.12
622 653 2.825532 TCTTAGCCCATTGTGGAAAAGC 59.174 45.455 0.00 0.00 40.96 3.51
678 787 2.514458 TGGGGATTTTCTCCTGCTTC 57.486 50.000 0.00 0.00 44.28 3.86
680 789 3.369175 GAATTGGGGATTTTCTCCTGCT 58.631 45.455 0.00 0.00 44.28 4.24
681 790 2.432146 GGAATTGGGGATTTTCTCCTGC 59.568 50.000 0.00 0.00 44.28 4.85
857 995 0.456221 ATCCTAGTGCTGTTCGGACG 59.544 55.000 0.00 0.00 39.22 4.79
893 1032 4.318332 TCACGAATCACAAGCTCTGAAAT 58.682 39.130 0.00 0.00 0.00 2.17
957 1096 4.862574 GCAAAACCGAATAAGGTGAAATCC 59.137 41.667 0.00 0.00 45.21 3.01
998 1137 3.533606 AAGATGACGAAGAGGACATGG 57.466 47.619 0.00 0.00 0.00 3.66
1209 1360 0.036294 GCCAGTGGTAGAGGTTGTCC 60.036 60.000 11.74 0.00 0.00 4.02
1371 1531 0.911769 TCGGACGGAGGGAGTACTAA 59.088 55.000 0.00 0.00 0.00 2.24
1372 1532 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
1373 1533 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
1374 1534 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
1375 1535 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
1376 1536 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
1381 1541 2.032290 GGACAAACTTTTTCGGACGGAG 60.032 50.000 0.00 0.00 0.00 4.63
1383 1543 1.002142 GGGACAAACTTTTTCGGACGG 60.002 52.381 0.00 0.00 0.00 4.79
1385 1545 5.503662 TTAAGGGACAAACTTTTTCGGAC 57.496 39.130 0.00 0.00 0.00 4.79
1386 1546 6.461788 CCATTTAAGGGACAAACTTTTTCGGA 60.462 38.462 0.00 0.00 0.00 4.55
1387 1547 5.694458 CCATTTAAGGGACAAACTTTTTCGG 59.306 40.000 0.00 0.00 0.00 4.30
1388 1548 6.508777 TCCATTTAAGGGACAAACTTTTTCG 58.491 36.000 0.00 0.00 0.00 3.46
1389 1549 7.931407 ACATCCATTTAAGGGACAAACTTTTTC 59.069 33.333 0.00 0.00 37.23 2.29
1390 1550 7.801104 ACATCCATTTAAGGGACAAACTTTTT 58.199 30.769 0.00 0.00 37.23 1.94
1392 1552 6.994421 ACATCCATTTAAGGGACAAACTTT 57.006 33.333 0.00 0.00 37.23 2.66
1396 1556 7.719633 GCTAGATACATCCATTTAAGGGACAAA 59.280 37.037 0.00 0.00 37.23 2.83
1397 1557 7.224297 GCTAGATACATCCATTTAAGGGACAA 58.776 38.462 0.00 0.00 37.23 3.18
1398 1558 6.239887 GGCTAGATACATCCATTTAAGGGACA 60.240 42.308 0.00 0.00 37.23 4.02
1399 1559 6.013293 AGGCTAGATACATCCATTTAAGGGAC 60.013 42.308 0.00 0.00 37.23 4.46
1401 1561 6.013379 TGAGGCTAGATACATCCATTTAAGGG 60.013 42.308 0.00 0.00 0.00 3.95
1403 1563 8.153550 ACTTGAGGCTAGATACATCCATTTAAG 58.846 37.037 0.00 0.00 0.00 1.85
1404 1564 8.034313 ACTTGAGGCTAGATACATCCATTTAA 57.966 34.615 0.00 0.00 0.00 1.52
1405 1565 7.618019 ACTTGAGGCTAGATACATCCATTTA 57.382 36.000 0.00 0.00 0.00 1.40
1406 1566 6.506538 ACTTGAGGCTAGATACATCCATTT 57.493 37.500 0.00 0.00 0.00 2.32
1408 1568 6.784969 ACTAACTTGAGGCTAGATACATCCAT 59.215 38.462 0.00 0.00 0.00 3.41
1410 1570 6.451393 CACTAACTTGAGGCTAGATACATCC 58.549 44.000 0.00 0.00 0.00 3.51
1411 1571 5.923684 GCACTAACTTGAGGCTAGATACATC 59.076 44.000 0.00 0.00 0.00 3.06
1414 1574 5.523438 AGCACTAACTTGAGGCTAGATAC 57.477 43.478 0.00 0.00 32.09 2.24
1421 1581 5.263968 TGTATCTAGCACTAACTTGAGGC 57.736 43.478 0.00 0.00 0.00 4.70
1422 1582 6.040955 TGGATGTATCTAGCACTAACTTGAGG 59.959 42.308 0.00 0.00 0.00 3.86
1423 1583 7.043961 TGGATGTATCTAGCACTAACTTGAG 57.956 40.000 0.00 0.00 0.00 3.02
1425 1585 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
1426 1586 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
1427 1587 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
1428 1588 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
1429 1589 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
1430 1590 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
1431 1591 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
1434 1594 5.489792 TCCCTCAAATGGATGTATCTAGC 57.510 43.478 0.00 0.00 0.00 3.42
1436 1596 7.459125 AGCTTATCCCTCAAATGGATGTATCTA 59.541 37.037 2.10 0.00 42.57 1.98
1438 1598 6.479884 AGCTTATCCCTCAAATGGATGTATC 58.520 40.000 2.10 0.00 42.57 2.24
1439 1599 6.460103 AGCTTATCCCTCAAATGGATGTAT 57.540 37.500 2.10 0.00 42.57 2.29
1441 1601 4.803329 AGCTTATCCCTCAAATGGATGT 57.197 40.909 2.10 0.00 42.57 3.06
1442 1602 5.135383 TCAAGCTTATCCCTCAAATGGATG 58.865 41.667 0.00 0.00 42.57 3.51
1443 1603 5.133322 TCTCAAGCTTATCCCTCAAATGGAT 59.867 40.000 0.00 0.00 44.71 3.41
1448 1608 4.908601 TGTCTCAAGCTTATCCCTCAAA 57.091 40.909 0.00 0.00 0.00 2.69
1449 1609 4.836825 CTTGTCTCAAGCTTATCCCTCAA 58.163 43.478 0.00 0.18 0.00 3.02
1450 1610 3.369892 GCTTGTCTCAAGCTTATCCCTCA 60.370 47.826 22.06 0.00 40.01 3.86
1451 1611 3.202097 GCTTGTCTCAAGCTTATCCCTC 58.798 50.000 22.06 0.00 40.01 4.30
1452 1612 3.274095 GCTTGTCTCAAGCTTATCCCT 57.726 47.619 22.06 0.00 40.01 4.20
1460 1620 2.290641 TCCGAAAAAGCTTGTCTCAAGC 59.709 45.455 21.90 21.90 43.31 4.01
1461 1621 3.604772 CGTCCGAAAAAGCTTGTCTCAAG 60.605 47.826 0.00 5.28 0.00 3.02
1463 1623 1.864711 CGTCCGAAAAAGCTTGTCTCA 59.135 47.619 0.00 0.00 0.00 3.27
1464 1624 1.194772 CCGTCCGAAAAAGCTTGTCTC 59.805 52.381 0.00 0.00 0.00 3.36
1466 1626 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
1468 1628 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
1470 1630 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
1472 1632 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
1473 1633 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
1474 1634 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1476 1636 2.734755 TTATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
1477 1637 2.092212 ACTTTATACTCCCTCCGTCCGA 60.092 50.000 0.00 0.00 0.00 4.55
1478 1638 2.305009 ACTTTATACTCCCTCCGTCCG 58.695 52.381 0.00 0.00 0.00 4.79
1479 1639 4.321824 GCATACTTTATACTCCCTCCGTCC 60.322 50.000 0.00 0.00 0.00 4.79
1480 1640 4.280174 TGCATACTTTATACTCCCTCCGTC 59.720 45.833 0.00 0.00 0.00 4.79
1481 1641 4.038883 GTGCATACTTTATACTCCCTCCGT 59.961 45.833 0.00 0.00 0.00 4.69
1482 1642 4.281182 AGTGCATACTTTATACTCCCTCCG 59.719 45.833 0.00 0.00 31.66 4.63
1483 1643 5.810080 AGTGCATACTTTATACTCCCTCC 57.190 43.478 0.00 0.00 31.66 4.30
1484 1644 6.583562 ACAAGTGCATACTTTATACTCCCTC 58.416 40.000 0.00 0.00 44.57 4.30
1485 1645 6.561519 ACAAGTGCATACTTTATACTCCCT 57.438 37.500 0.00 0.00 44.57 4.20
1486 1646 8.904099 ATTACAAGTGCATACTTTATACTCCC 57.096 34.615 0.00 0.00 44.57 4.30
1532 1692 4.409718 AAACAAATTACGGGTGCCTTTT 57.590 36.364 0.00 0.00 0.00 2.27
1551 1711 7.708752 CCCTACAAGAAAAACACTGCATTAAAA 59.291 33.333 0.00 0.00 0.00 1.52
1560 1720 4.204799 GGTGACCCTACAAGAAAAACACT 58.795 43.478 0.00 0.00 0.00 3.55
1687 1847 6.535274 AACCTACACGTCACATAAGAAAAC 57.465 37.500 0.00 0.00 0.00 2.43
1701 1866 2.223433 CCTAACTCGGCTAACCTACACG 60.223 54.545 0.00 0.00 0.00 4.49
1848 2013 6.369065 CACTCTTTACGAACTATTTTGAGGCT 59.631 38.462 0.00 0.00 0.00 4.58
1849 2014 6.147328 ACACTCTTTACGAACTATTTTGAGGC 59.853 38.462 0.00 0.00 0.00 4.70
1908 2073 9.155975 GTTATGAAGACTGCTCTTAATGAAAGA 57.844 33.333 0.00 0.00 42.07 2.52
1909 2074 8.939929 TGTTATGAAGACTGCTCTTAATGAAAG 58.060 33.333 0.00 0.00 36.82 2.62
1921 2086 7.118390 AGTCTGTTTACATGTTATGAAGACTGC 59.882 37.037 20.76 5.47 31.63 4.40
2112 2280 6.182627 ACATGCTGTTTCTGGATCAATCTTA 58.817 36.000 0.00 0.00 0.00 2.10
2119 2287 4.978083 ATTGACATGCTGTTTCTGGATC 57.022 40.909 0.00 0.00 0.00 3.36
2151 2319 2.517959 CTGGTTTCTCCATGCTTCCAA 58.482 47.619 0.00 0.00 46.12 3.53
2188 2356 9.301897 ACTTTTCTTTTAATCTGTGCTCCTTAT 57.698 29.630 0.00 0.00 0.00 1.73
2367 2537 8.950210 ACTTCAGATATGTTTCTTTACACATGG 58.050 33.333 0.00 0.00 35.24 3.66
2853 3065 1.450312 GCACGGGCATCTTGCTAGT 60.450 57.895 3.77 0.00 44.28 2.57
2854 3066 3.414272 GCACGGGCATCTTGCTAG 58.586 61.111 3.77 0.00 44.28 3.42
2869 3081 3.422303 GACGCTCCGTGCAATGCA 61.422 61.111 2.72 2.72 41.37 3.96
2870 3082 2.839324 CTTGACGCTCCGTGCAATGC 62.839 60.000 0.00 0.00 41.37 3.56
2871 3083 1.133253 CTTGACGCTCCGTGCAATG 59.867 57.895 0.00 0.00 41.37 2.82
2872 3084 0.391661 ATCTTGACGCTCCGTGCAAT 60.392 50.000 0.00 0.00 41.37 3.56
2873 3085 1.005037 ATCTTGACGCTCCGTGCAA 60.005 52.632 0.00 0.00 41.37 4.08
2874 3086 1.737735 CATCTTGACGCTCCGTGCA 60.738 57.895 0.00 0.00 41.37 4.57
2875 3087 3.084579 CATCTTGACGCTCCGTGC 58.915 61.111 0.00 0.00 41.37 5.34
2876 3088 1.086067 ATGCATCTTGACGCTCCGTG 61.086 55.000 0.00 0.00 41.37 4.94
2877 3089 0.391661 AATGCATCTTGACGCTCCGT 60.392 50.000 0.00 0.00 45.10 4.69
2878 3090 0.729116 AAATGCATCTTGACGCTCCG 59.271 50.000 0.00 0.00 0.00 4.63
2879 3091 2.927553 AAAATGCATCTTGACGCTCC 57.072 45.000 0.00 0.00 0.00 4.70
2912 3124 2.231964 GCATGGGTCAATCACAACATGT 59.768 45.455 0.00 0.00 40.98 3.21
2913 3125 2.732912 CGCATGGGTCAATCACAACATG 60.733 50.000 0.68 0.00 41.45 3.21
2914 3126 1.473677 CGCATGGGTCAATCACAACAT 59.526 47.619 0.68 0.00 31.12 2.71
2915 3127 0.880441 CGCATGGGTCAATCACAACA 59.120 50.000 0.68 0.00 31.12 3.33
2916 3128 0.171007 CCGCATGGGTCAATCACAAC 59.829 55.000 9.14 0.00 31.12 3.32
2917 3129 0.037447 TCCGCATGGGTCAATCACAA 59.963 50.000 9.14 0.00 37.00 3.33
2918 3130 0.037447 TTCCGCATGGGTCAATCACA 59.963 50.000 9.14 0.00 37.00 3.58
2919 3131 0.734889 CTTCCGCATGGGTCAATCAC 59.265 55.000 9.14 0.00 37.00 3.06
2920 3132 0.327924 ACTTCCGCATGGGTCAATCA 59.672 50.000 9.14 0.00 37.00 2.57
2921 3133 2.325583 TACTTCCGCATGGGTCAATC 57.674 50.000 9.14 0.00 37.00 2.67
2922 3134 2.799126 TTACTTCCGCATGGGTCAAT 57.201 45.000 9.14 0.00 37.00 2.57
2923 3135 2.639065 GATTACTTCCGCATGGGTCAA 58.361 47.619 9.14 0.45 37.00 3.18
2924 3136 1.134220 GGATTACTTCCGCATGGGTCA 60.134 52.381 9.14 0.00 33.93 4.02
2925 3137 1.594331 GGATTACTTCCGCATGGGTC 58.406 55.000 9.14 0.00 33.93 4.46
2926 3138 0.182775 GGGATTACTTCCGCATGGGT 59.817 55.000 9.14 0.00 46.52 4.51
2927 3139 0.182537 TGGGATTACTTCCGCATGGG 59.817 55.000 2.06 2.06 46.52 4.00
2928 3140 1.881973 CATGGGATTACTTCCGCATGG 59.118 52.381 0.00 0.00 46.52 3.66
2930 3142 2.092429 ACACATGGGATTACTTCCGCAT 60.092 45.455 0.00 0.00 46.52 4.73
2931 3143 1.280710 ACACATGGGATTACTTCCGCA 59.719 47.619 0.00 0.00 46.52 5.69
2932 3144 2.038387 ACACATGGGATTACTTCCGC 57.962 50.000 0.00 0.00 46.52 5.54
2933 3145 6.150474 AGTTTTTACACATGGGATTACTTCCG 59.850 38.462 0.00 0.00 46.52 4.30
2934 3146 7.462571 AGTTTTTACACATGGGATTACTTCC 57.537 36.000 0.00 0.00 44.62 3.46
2937 3149 9.747898 TCATTAGTTTTTACACATGGGATTACT 57.252 29.630 0.00 0.12 0.00 2.24
2956 3168 9.567776 TCTTCTCTTTCTCGAGATATCATTAGT 57.432 33.333 17.44 0.00 39.60 2.24
2958 3170 9.785982 TCTCTTCTCTTTCTCGAGATATCATTA 57.214 33.333 17.44 0.00 39.60 1.90
2959 3171 8.690203 TCTCTTCTCTTTCTCGAGATATCATT 57.310 34.615 17.44 0.00 39.60 2.57
2960 3172 8.868522 ATCTCTTCTCTTTCTCGAGATATCAT 57.131 34.615 17.44 0.00 39.08 2.45
2961 3173 9.435688 CTATCTCTTCTCTTTCTCGAGATATCA 57.564 37.037 17.44 0.00 40.74 2.15
2962 3174 8.883731 CCTATCTCTTCTCTTTCTCGAGATATC 58.116 40.741 17.44 0.00 40.74 1.63
2963 3175 7.829211 CCCTATCTCTTCTCTTTCTCGAGATAT 59.171 40.741 17.44 0.00 40.74 1.63
2964 3176 7.165485 CCCTATCTCTTCTCTTTCTCGAGATA 58.835 42.308 17.44 10.92 40.69 1.98
2965 3177 6.003950 CCCTATCTCTTCTCTTTCTCGAGAT 58.996 44.000 17.44 0.00 42.34 2.75
2966 3178 5.104277 ACCCTATCTCTTCTCTTTCTCGAGA 60.104 44.000 12.08 12.08 38.23 4.04
2967 3179 5.008613 CACCCTATCTCTTCTCTTTCTCGAG 59.991 48.000 5.93 5.93 0.00 4.04
2968 3180 4.884744 CACCCTATCTCTTCTCTTTCTCGA 59.115 45.833 0.00 0.00 0.00 4.04
2969 3181 4.884744 TCACCCTATCTCTTCTCTTTCTCG 59.115 45.833 0.00 0.00 0.00 4.04
2970 3182 5.301805 CCTCACCCTATCTCTTCTCTTTCTC 59.698 48.000 0.00 0.00 0.00 2.87
2971 3183 5.043732 TCCTCACCCTATCTCTTCTCTTTCT 60.044 44.000 0.00 0.00 0.00 2.52
2972 3184 5.205056 TCCTCACCCTATCTCTTCTCTTTC 58.795 45.833 0.00 0.00 0.00 2.62
2973 3185 5.208121 CTCCTCACCCTATCTCTTCTCTTT 58.792 45.833 0.00 0.00 0.00 2.52
2974 3186 4.387437 CCTCCTCACCCTATCTCTTCTCTT 60.387 50.000 0.00 0.00 0.00 2.85
2975 3187 3.140144 CCTCCTCACCCTATCTCTTCTCT 59.860 52.174 0.00 0.00 0.00 3.10
2976 3188 3.139397 TCCTCCTCACCCTATCTCTTCTC 59.861 52.174 0.00 0.00 0.00 2.87
2977 3189 3.135279 TCCTCCTCACCCTATCTCTTCT 58.865 50.000 0.00 0.00 0.00 2.85
2978 3190 3.117284 ACTCCTCCTCACCCTATCTCTTC 60.117 52.174 0.00 0.00 0.00 2.87
2979 3191 2.862597 ACTCCTCCTCACCCTATCTCTT 59.137 50.000 0.00 0.00 0.00 2.85
2980 3192 2.176798 CACTCCTCCTCACCCTATCTCT 59.823 54.545 0.00 0.00 0.00 3.10
2981 3193 2.091555 ACACTCCTCCTCACCCTATCTC 60.092 54.545 0.00 0.00 0.00 2.75
2982 3194 1.933765 ACACTCCTCCTCACCCTATCT 59.066 52.381 0.00 0.00 0.00 1.98
2983 3195 2.463047 ACACTCCTCCTCACCCTATC 57.537 55.000 0.00 0.00 0.00 2.08
2984 3196 4.348020 TTTACACTCCTCCTCACCCTAT 57.652 45.455 0.00 0.00 0.00 2.57
2985 3197 3.839323 TTTACACTCCTCCTCACCCTA 57.161 47.619 0.00 0.00 0.00 3.53
2986 3198 2.715763 TTTACACTCCTCCTCACCCT 57.284 50.000 0.00 0.00 0.00 4.34
2987 3199 3.409570 GTTTTTACACTCCTCCTCACCC 58.590 50.000 0.00 0.00 0.00 4.61
2988 3200 3.409570 GGTTTTTACACTCCTCCTCACC 58.590 50.000 0.00 0.00 0.00 4.02
2989 3201 3.181448 TGGGTTTTTACACTCCTCCTCAC 60.181 47.826 0.00 0.00 0.00 3.51
2990 3202 3.050089 TGGGTTTTTACACTCCTCCTCA 58.950 45.455 0.00 0.00 0.00 3.86
2991 3203 3.782656 TGGGTTTTTACACTCCTCCTC 57.217 47.619 0.00 0.00 0.00 3.71
2992 3204 3.814316 GCATGGGTTTTTACACTCCTCCT 60.814 47.826 0.00 0.00 0.00 3.69
2993 3205 2.492088 GCATGGGTTTTTACACTCCTCC 59.508 50.000 0.00 0.00 0.00 4.30
2994 3206 2.161609 CGCATGGGTTTTTACACTCCTC 59.838 50.000 0.68 0.00 0.00 3.71
2995 3207 2.159382 CGCATGGGTTTTTACACTCCT 58.841 47.619 0.68 0.00 0.00 3.69
2996 3208 1.201414 CCGCATGGGTTTTTACACTCC 59.799 52.381 9.14 0.00 0.00 3.85
2997 3209 1.402325 GCCGCATGGGTTTTTACACTC 60.402 52.381 9.14 0.00 38.44 3.51
2998 3210 0.601057 GCCGCATGGGTTTTTACACT 59.399 50.000 9.14 0.00 38.44 3.55
2999 3211 0.389296 GGCCGCATGGGTTTTTACAC 60.389 55.000 9.14 0.00 38.44 2.90
3000 3212 0.827925 TGGCCGCATGGGTTTTTACA 60.828 50.000 9.14 0.00 38.44 2.41
3001 3213 0.389296 GTGGCCGCATGGGTTTTTAC 60.389 55.000 12.58 0.00 38.44 2.01
3002 3214 1.536943 GGTGGCCGCATGGGTTTTTA 61.537 55.000 19.98 0.00 38.44 1.52
3003 3215 2.740438 GTGGCCGCATGGGTTTTT 59.260 55.556 12.58 0.00 38.44 1.94
3004 3216 3.310307 GGTGGCCGCATGGGTTTT 61.310 61.111 19.98 0.00 38.44 2.43
3005 3217 3.903281 ATGGTGGCCGCATGGGTTT 62.903 57.895 19.98 0.00 38.44 3.27
3006 3218 4.380945 ATGGTGGCCGCATGGGTT 62.381 61.111 19.98 0.00 38.44 4.11
3016 3228 0.174162 GAACAATCTGGCATGGTGGC 59.826 55.000 0.00 0.00 44.03 5.01
3017 3229 0.819582 GGAACAATCTGGCATGGTGG 59.180 55.000 0.00 0.00 0.00 4.61
3018 3230 1.475280 CTGGAACAATCTGGCATGGTG 59.525 52.381 0.00 0.00 38.70 4.17
3019 3231 1.355381 TCTGGAACAATCTGGCATGGT 59.645 47.619 0.00 0.00 38.70 3.55
3020 3232 2.022195 CTCTGGAACAATCTGGCATGG 58.978 52.381 0.00 0.00 38.70 3.66
3021 3233 2.022195 CCTCTGGAACAATCTGGCATG 58.978 52.381 0.00 0.00 38.70 4.06
3022 3234 1.637553 ACCTCTGGAACAATCTGGCAT 59.362 47.619 0.00 0.00 38.70 4.40
3023 3235 1.067295 ACCTCTGGAACAATCTGGCA 58.933 50.000 0.00 0.00 38.70 4.92
3024 3236 2.206576 AACCTCTGGAACAATCTGGC 57.793 50.000 0.00 0.00 38.70 4.85
3025 3237 3.084786 GGAAACCTCTGGAACAATCTGG 58.915 50.000 0.00 0.00 38.70 3.86
3026 3238 4.026356 AGGAAACCTCTGGAACAATCTG 57.974 45.455 0.00 0.00 38.70 2.90
3027 3239 4.731313 AAGGAAACCTCTGGAACAATCT 57.269 40.909 0.00 0.00 30.54 2.40
3028 3240 5.791336 AAAAGGAAACCTCTGGAACAATC 57.209 39.130 0.00 0.00 30.54 2.67
3048 3260 8.140677 CAACCTCATTGTTGAGCAATTAAAAA 57.859 30.769 0.00 0.00 46.77 1.94
3049 3261 7.712264 CAACCTCATTGTTGAGCAATTAAAA 57.288 32.000 0.00 0.00 46.77 1.52
3063 3275 4.080356 TCCTTATCTCCCACAACCTCATTG 60.080 45.833 0.00 0.00 44.60 2.82
3064 3276 4.111577 TCCTTATCTCCCACAACCTCATT 58.888 43.478 0.00 0.00 0.00 2.57
3065 3277 3.736094 TCCTTATCTCCCACAACCTCAT 58.264 45.455 0.00 0.00 0.00 2.90
3066 3278 3.199442 TCCTTATCTCCCACAACCTCA 57.801 47.619 0.00 0.00 0.00 3.86
3067 3279 3.711704 TCATCCTTATCTCCCACAACCTC 59.288 47.826 0.00 0.00 0.00 3.85
3068 3280 3.736094 TCATCCTTATCTCCCACAACCT 58.264 45.455 0.00 0.00 0.00 3.50
3069 3281 4.200092 GTTCATCCTTATCTCCCACAACC 58.800 47.826 0.00 0.00 0.00 3.77
3070 3282 4.843728 TGTTCATCCTTATCTCCCACAAC 58.156 43.478 0.00 0.00 0.00 3.32
3071 3283 5.500234 CTTGTTCATCCTTATCTCCCACAA 58.500 41.667 0.00 0.00 0.00 3.33
3072 3284 4.080356 CCTTGTTCATCCTTATCTCCCACA 60.080 45.833 0.00 0.00 0.00 4.17
3073 3285 4.455606 CCTTGTTCATCCTTATCTCCCAC 58.544 47.826 0.00 0.00 0.00 4.61
3074 3286 3.459598 CCCTTGTTCATCCTTATCTCCCA 59.540 47.826 0.00 0.00 0.00 4.37
3075 3287 3.716872 TCCCTTGTTCATCCTTATCTCCC 59.283 47.826 0.00 0.00 0.00 4.30
3076 3288 5.372373 CTTCCCTTGTTCATCCTTATCTCC 58.628 45.833 0.00 0.00 0.00 3.71
3077 3289 5.372373 CCTTCCCTTGTTCATCCTTATCTC 58.628 45.833 0.00 0.00 0.00 2.75
3078 3290 4.385754 GCCTTCCCTTGTTCATCCTTATCT 60.386 45.833 0.00 0.00 0.00 1.98
3079 3291 3.885901 GCCTTCCCTTGTTCATCCTTATC 59.114 47.826 0.00 0.00 0.00 1.75
3080 3292 3.373110 GGCCTTCCCTTGTTCATCCTTAT 60.373 47.826 0.00 0.00 0.00 1.73
3081 3293 2.025321 GGCCTTCCCTTGTTCATCCTTA 60.025 50.000 0.00 0.00 0.00 2.69
3082 3294 1.272704 GGCCTTCCCTTGTTCATCCTT 60.273 52.381 0.00 0.00 0.00 3.36
3083 3295 0.332972 GGCCTTCCCTTGTTCATCCT 59.667 55.000 0.00 0.00 0.00 3.24
3084 3296 0.332972 AGGCCTTCCCTTGTTCATCC 59.667 55.000 0.00 0.00 43.06 3.51
3085 3297 3.987594 AGGCCTTCCCTTGTTCATC 57.012 52.632 0.00 0.00 43.06 2.92
3094 3306 2.143876 TTTGCAGATAAGGCCTTCCC 57.856 50.000 24.49 15.04 0.00 3.97
3095 3307 3.026694 ACATTTGCAGATAAGGCCTTCC 58.973 45.455 24.49 15.44 0.00 3.46
3096 3308 3.181483 CCACATTTGCAGATAAGGCCTTC 60.181 47.826 24.49 9.18 0.00 3.46
3097 3309 2.762327 CCACATTTGCAGATAAGGCCTT 59.238 45.455 24.18 24.18 0.00 4.35
3098 3310 2.025037 TCCACATTTGCAGATAAGGCCT 60.025 45.455 0.00 0.00 0.00 5.19
3099 3311 2.360165 CTCCACATTTGCAGATAAGGCC 59.640 50.000 0.00 0.00 0.00 5.19
3100 3312 3.282021 TCTCCACATTTGCAGATAAGGC 58.718 45.455 0.00 0.00 0.00 4.35
3101 3313 4.774124 TCTCTCCACATTTGCAGATAAGG 58.226 43.478 0.00 0.00 0.00 2.69
3102 3314 4.815308 CCTCTCTCCACATTTGCAGATAAG 59.185 45.833 0.00 0.00 0.00 1.73
3103 3315 4.225942 ACCTCTCTCCACATTTGCAGATAA 59.774 41.667 0.00 0.00 0.00 1.75
3104 3316 3.776969 ACCTCTCTCCACATTTGCAGATA 59.223 43.478 0.00 0.00 0.00 1.98
3105 3317 2.575279 ACCTCTCTCCACATTTGCAGAT 59.425 45.455 0.00 0.00 0.00 2.90
3106 3318 1.980765 ACCTCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
3107 3319 2.082231 CACCTCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
3108 3320 1.883638 GCACCTCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
3109 3321 0.807496 GCACCTCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
3110 3322 2.082231 CTGCACCTCTCTCCACATTTG 58.918 52.381 0.00 0.00 0.00 2.32
3111 3323 1.004044 CCTGCACCTCTCTCCACATTT 59.996 52.381 0.00 0.00 0.00 2.32
3112 3324 0.617413 CCTGCACCTCTCTCCACATT 59.383 55.000 0.00 0.00 0.00 2.71
3113 3325 0.546267 ACCTGCACCTCTCTCCACAT 60.546 55.000 0.00 0.00 0.00 3.21
3114 3326 0.114364 TACCTGCACCTCTCTCCACA 59.886 55.000 0.00 0.00 0.00 4.17
3115 3327 1.410882 GATACCTGCACCTCTCTCCAC 59.589 57.143 0.00 0.00 0.00 4.02
3116 3328 1.289231 AGATACCTGCACCTCTCTCCA 59.711 52.381 0.00 0.00 0.00 3.86
3117 3329 2.080654 AGATACCTGCACCTCTCTCC 57.919 55.000 0.00 0.00 0.00 3.71
3118 3330 4.479786 AAAAGATACCTGCACCTCTCTC 57.520 45.455 0.00 0.00 0.00 3.20
3119 3331 4.583871 CAAAAAGATACCTGCACCTCTCT 58.416 43.478 0.00 0.00 0.00 3.10
3120 3332 3.127721 GCAAAAAGATACCTGCACCTCTC 59.872 47.826 0.00 0.00 34.87 3.20
3121 3333 3.084786 GCAAAAAGATACCTGCACCTCT 58.915 45.455 0.00 0.00 34.87 3.69
3122 3334 2.819608 TGCAAAAAGATACCTGCACCTC 59.180 45.455 0.00 0.00 39.77 3.85
3123 3335 2.875296 TGCAAAAAGATACCTGCACCT 58.125 42.857 0.00 0.00 39.77 4.00
3124 3336 3.658757 TTGCAAAAAGATACCTGCACC 57.341 42.857 0.00 0.00 44.08 5.01
3125 3337 6.365050 CAATTTTGCAAAAAGATACCTGCAC 58.635 36.000 27.10 0.00 44.08 4.57
3126 3338 6.542574 CAATTTTGCAAAAAGATACCTGCA 57.457 33.333 27.10 1.37 42.79 4.41
3142 3354 6.790285 AGAAAGCAAACTATGGCAATTTTG 57.210 33.333 12.14 12.14 33.03 2.44
3143 3355 7.765819 GGATAGAAAGCAAACTATGGCAATTTT 59.234 33.333 0.00 0.00 30.74 1.82
3144 3356 7.267857 GGATAGAAAGCAAACTATGGCAATTT 58.732 34.615 0.00 0.00 30.74 1.82
3145 3357 6.460123 CGGATAGAAAGCAAACTATGGCAATT 60.460 38.462 0.00 0.00 30.74 2.32
3146 3358 5.009010 CGGATAGAAAGCAAACTATGGCAAT 59.991 40.000 0.00 0.00 30.74 3.56
3147 3359 4.335315 CGGATAGAAAGCAAACTATGGCAA 59.665 41.667 0.00 0.00 30.74 4.52
3148 3360 3.876914 CGGATAGAAAGCAAACTATGGCA 59.123 43.478 0.00 0.00 30.74 4.92
3149 3361 3.877508 ACGGATAGAAAGCAAACTATGGC 59.122 43.478 0.00 0.00 30.74 4.40
3150 3362 5.116180 TGACGGATAGAAAGCAAACTATGG 58.884 41.667 0.00 0.00 30.74 2.74
3151 3363 6.042777 TCTGACGGATAGAAAGCAAACTATG 58.957 40.000 0.00 0.00 30.74 2.23
3152 3364 6.222038 TCTGACGGATAGAAAGCAAACTAT 57.778 37.500 0.00 0.00 32.87 2.12
3153 3365 5.654603 TCTGACGGATAGAAAGCAAACTA 57.345 39.130 0.00 0.00 0.00 2.24
3154 3366 4.537135 TCTGACGGATAGAAAGCAAACT 57.463 40.909 0.00 0.00 0.00 2.66
3155 3367 8.082852 TCTATATCTGACGGATAGAAAGCAAAC 58.917 37.037 9.78 0.00 39.89 2.93
3156 3368 8.178313 TCTATATCTGACGGATAGAAAGCAAA 57.822 34.615 9.78 0.00 39.89 3.68
3157 3369 7.761038 TCTATATCTGACGGATAGAAAGCAA 57.239 36.000 9.78 0.00 39.89 3.91
3158 3370 7.611855 TGATCTATATCTGACGGATAGAAAGCA 59.388 37.037 9.78 0.00 39.89 3.91
3159 3371 7.990917 TGATCTATATCTGACGGATAGAAAGC 58.009 38.462 9.78 0.00 39.89 3.51
3162 3374 8.451748 CGTTTGATCTATATCTGACGGATAGAA 58.548 37.037 9.78 0.63 39.89 2.10
3163 3375 7.975750 CGTTTGATCTATATCTGACGGATAGA 58.024 38.462 9.78 4.48 39.89 1.98
3169 3381 6.003234 AGACCGTTTGATCTATATCTGACG 57.997 41.667 0.00 8.68 39.08 4.35
3170 3382 8.952278 AGATAGACCGTTTGATCTATATCTGAC 58.048 37.037 0.00 0.00 38.09 3.51
3171 3383 9.521841 AAGATAGACCGTTTGATCTATATCTGA 57.478 33.333 0.00 0.00 38.09 3.27
3172 3384 9.566530 CAAGATAGACCGTTTGATCTATATCTG 57.433 37.037 0.00 0.00 38.09 2.90
3173 3385 8.247562 GCAAGATAGACCGTTTGATCTATATCT 58.752 37.037 0.00 0.00 38.09 1.98
3174 3386 8.029522 TGCAAGATAGACCGTTTGATCTATATC 58.970 37.037 0.00 0.00 38.09 1.63
3175 3387 7.896811 TGCAAGATAGACCGTTTGATCTATAT 58.103 34.615 0.00 0.00 38.09 0.86
3176 3388 7.284919 TGCAAGATAGACCGTTTGATCTATA 57.715 36.000 0.00 0.00 38.09 1.31
3177 3389 6.161855 TGCAAGATAGACCGTTTGATCTAT 57.838 37.500 0.00 0.00 40.18 1.98
3178 3390 5.592104 TGCAAGATAGACCGTTTGATCTA 57.408 39.130 0.00 0.00 32.11 1.98
3179 3391 4.471904 TGCAAGATAGACCGTTTGATCT 57.528 40.909 0.00 0.00 0.00 2.75
3180 3392 4.870426 TCTTGCAAGATAGACCGTTTGATC 59.130 41.667 25.16 0.00 0.00 2.92
3181 3393 4.832248 TCTTGCAAGATAGACCGTTTGAT 58.168 39.130 25.16 0.00 0.00 2.57
3182 3394 4.265904 TCTTGCAAGATAGACCGTTTGA 57.734 40.909 25.16 0.00 0.00 2.69
3183 3395 4.201851 CCATCTTGCAAGATAGACCGTTTG 60.202 45.833 35.25 23.01 43.65 2.93
3184 3396 3.941483 CCATCTTGCAAGATAGACCGTTT 59.059 43.478 35.25 13.83 43.65 3.60
3185 3397 3.535561 CCATCTTGCAAGATAGACCGTT 58.464 45.455 35.25 14.53 43.65 4.44
3186 3398 2.743183 GCCATCTTGCAAGATAGACCGT 60.743 50.000 35.25 15.25 43.65 4.83
3187 3399 1.869767 GCCATCTTGCAAGATAGACCG 59.130 52.381 35.25 23.99 43.65 4.79
3188 3400 2.877168 CTGCCATCTTGCAAGATAGACC 59.123 50.000 35.25 23.88 43.65 3.85
3189 3401 2.877168 CCTGCCATCTTGCAAGATAGAC 59.123 50.000 35.25 26.93 43.65 2.59
3190 3402 2.747467 GCCTGCCATCTTGCAAGATAGA 60.747 50.000 35.25 22.33 43.65 1.98
3191 3403 1.607628 GCCTGCCATCTTGCAAGATAG 59.392 52.381 35.25 30.03 43.65 2.08
3192 3404 1.064537 TGCCTGCCATCTTGCAAGATA 60.065 47.619 35.25 22.19 43.65 1.98
3193 3405 0.323999 TGCCTGCCATCTTGCAAGAT 60.324 50.000 31.78 31.78 46.30 2.40
3194 3406 1.075305 TGCCTGCCATCTTGCAAGA 59.925 52.632 30.23 30.23 41.51 3.02
3195 3407 1.214589 GTGCCTGCCATCTTGCAAG 59.785 57.895 20.81 20.81 41.51 4.01
3196 3408 1.531128 TGTGCCTGCCATCTTGCAA 60.531 52.632 0.00 0.00 41.51 4.08
3197 3409 2.115695 TGTGCCTGCCATCTTGCA 59.884 55.556 0.00 0.00 39.37 4.08
3198 3410 2.570181 GTGTGCCTGCCATCTTGC 59.430 61.111 0.00 0.00 0.00 4.01
3199 3411 0.968901 ATGGTGTGCCTGCCATCTTG 60.969 55.000 0.00 0.00 41.24 3.02
3200 3412 1.385368 ATGGTGTGCCTGCCATCTT 59.615 52.632 0.00 0.00 41.24 2.40
3201 3413 3.093555 ATGGTGTGCCTGCCATCT 58.906 55.556 0.00 0.00 41.24 2.90
3204 3416 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
3205 3417 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
3206 3418 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
3207 3419 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
3208 3420 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
3209 3421 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
3210 3422 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
3211 3423 1.733912 CGAGTTGGTGATGATGGTGTG 59.266 52.381 0.00 0.00 0.00 3.82
3212 3424 1.339055 CCGAGTTGGTGATGATGGTGT 60.339 52.381 0.00 0.00 0.00 4.16
3213 3425 1.372582 CCGAGTTGGTGATGATGGTG 58.627 55.000 0.00 0.00 0.00 4.17
3214 3426 3.861341 CCGAGTTGGTGATGATGGT 57.139 52.632 0.00 0.00 0.00 3.55
3237 3449 8.307483 GCCATATGCTTGTCTCTACTCTTATAA 58.693 37.037 0.00 0.00 36.87 0.98
3238 3450 7.451566 TGCCATATGCTTGTCTCTACTCTTATA 59.548 37.037 0.00 0.00 42.00 0.98
3239 3451 6.268617 TGCCATATGCTTGTCTCTACTCTTAT 59.731 38.462 0.00 0.00 42.00 1.73
3240 3452 5.598417 TGCCATATGCTTGTCTCTACTCTTA 59.402 40.000 0.00 0.00 42.00 2.10
3241 3453 4.406972 TGCCATATGCTTGTCTCTACTCTT 59.593 41.667 0.00 0.00 42.00 2.85
3242 3454 3.963374 TGCCATATGCTTGTCTCTACTCT 59.037 43.478 0.00 0.00 42.00 3.24
3243 3455 4.054671 GTGCCATATGCTTGTCTCTACTC 58.945 47.826 0.00 0.00 42.00 2.59
3244 3456 3.181461 GGTGCCATATGCTTGTCTCTACT 60.181 47.826 0.00 0.00 42.00 2.57
3245 3457 3.134458 GGTGCCATATGCTTGTCTCTAC 58.866 50.000 0.00 0.00 42.00 2.59
3246 3458 2.771372 TGGTGCCATATGCTTGTCTCTA 59.229 45.455 0.00 0.00 42.00 2.43
3247 3459 1.561076 TGGTGCCATATGCTTGTCTCT 59.439 47.619 0.00 0.00 42.00 3.10
3248 3460 2.042686 TGGTGCCATATGCTTGTCTC 57.957 50.000 0.00 0.00 42.00 3.36
3249 3461 2.304092 CATGGTGCCATATGCTTGTCT 58.696 47.619 3.07 0.00 42.00 3.41
3250 3462 1.269413 GCATGGTGCCATATGCTTGTC 60.269 52.381 3.07 0.00 44.70 3.18
3365 3577 3.057174 GCTACAGCCTACAGTATAGCAGG 60.057 52.174 5.57 0.00 36.03 4.85
3493 3705 8.932945 TCTAACACATTAGAGCAGAACATAAG 57.067 34.615 0.00 0.00 41.58 1.73
3783 3995 9.859152 AGAATATTCCCTTTCCTAAATTCAGAG 57.141 33.333 11.92 0.00 0.00 3.35
3795 4007 8.910351 ACAGCAGTATTAGAATATTCCCTTTC 57.090 34.615 11.92 1.36 0.00 2.62
3816 4029 7.043325 GCAACAACTATGTAGACACTATACAGC 60.043 40.741 0.00 0.00 39.40 4.40
3864 4077 7.390162 TCTGCACAGACAAAACATCATAATGTA 59.610 33.333 0.00 0.00 37.56 2.29
3919 4133 5.067936 GCTTAGCTCTATCAGTCAGGTACAA 59.932 44.000 0.00 0.00 0.00 2.41
3998 4212 9.346725 GAGTCAAATTTCCTTATTTAGTTGCAG 57.653 33.333 0.00 0.00 0.00 4.41
4049 5897 7.289317 TCCTTTCCAACGTTATATATCTCAGGT 59.711 37.037 0.00 0.00 0.00 4.00
4073 5921 8.562892 CACAACTCAGATTAATGTATTGGATCC 58.437 37.037 4.20 4.20 0.00 3.36
4074 5922 8.072567 GCACAACTCAGATTAATGTATTGGATC 58.927 37.037 0.00 0.00 0.00 3.36
4075 5923 7.013655 GGCACAACTCAGATTAATGTATTGGAT 59.986 37.037 0.00 0.00 0.00 3.41
4076 5924 6.318648 GGCACAACTCAGATTAATGTATTGGA 59.681 38.462 0.00 0.00 0.00 3.53
4100 5948 9.976255 CAAAATAATGCAAACACATCTTTATGG 57.024 29.630 0.00 0.00 37.43 2.74
4135 5992 8.207545 AGTAAACCATTAAAGCCAATTTCACAA 58.792 29.630 0.00 0.00 32.01 3.33
4138 5995 8.646900 AGAAGTAAACCATTAAAGCCAATTTCA 58.353 29.630 0.00 0.00 32.01 2.69
4139 5996 9.140286 GAGAAGTAAACCATTAAAGCCAATTTC 57.860 33.333 0.00 0.00 32.01 2.17
4140 5997 8.646900 TGAGAAGTAAACCATTAAAGCCAATTT 58.353 29.630 0.00 0.00 34.72 1.82
4145 6002 7.658261 ACTTTGAGAAGTAAACCATTAAAGCC 58.342 34.615 0.00 0.00 44.13 4.35
4151 6008 8.170730 AGGGATAACTTTGAGAAGTAAACCATT 58.829 33.333 0.00 0.00 45.18 3.16
4164 6021 9.396022 CTTAAGAATTGCTAGGGATAACTTTGA 57.604 33.333 0.00 0.00 0.00 2.69
4166 6023 9.755122 AACTTAAGAATTGCTAGGGATAACTTT 57.245 29.630 10.09 0.00 0.00 2.66
4173 6030 8.109634 AGAATTGAACTTAAGAATTGCTAGGGA 58.890 33.333 10.09 0.00 0.00 4.20
4188 6045 2.949447 AGTGGGCACAGAATTGAACTT 58.051 42.857 0.00 0.00 0.00 2.66
4191 6048 2.942804 TCAAGTGGGCACAGAATTGAA 58.057 42.857 8.36 0.00 0.00 2.69
4192 6049 2.655090 TCAAGTGGGCACAGAATTGA 57.345 45.000 7.01 7.01 0.00 2.57
4193 6050 3.947910 AATCAAGTGGGCACAGAATTG 57.052 42.857 0.00 0.00 0.00 2.32
4194 6051 3.642848 ACAAATCAAGTGGGCACAGAATT 59.357 39.130 0.00 0.00 0.00 2.17
4195 6052 3.233507 ACAAATCAAGTGGGCACAGAAT 58.766 40.909 0.00 0.00 0.00 2.40
4196 6053 2.665165 ACAAATCAAGTGGGCACAGAA 58.335 42.857 0.00 0.00 0.00 3.02
4198 6055 2.361757 TGAACAAATCAAGTGGGCACAG 59.638 45.455 0.00 0.00 34.30 3.66
4199 6056 2.382882 TGAACAAATCAAGTGGGCACA 58.617 42.857 0.00 0.00 34.30 4.57
4200 6057 3.451141 TTGAACAAATCAAGTGGGCAC 57.549 42.857 0.00 0.00 43.08 5.01
4233 6172 5.178797 CCACTGAAACTTCCATACTACCAG 58.821 45.833 0.00 0.00 0.00 4.00
4236 6175 3.939592 GGCCACTGAAACTTCCATACTAC 59.060 47.826 0.00 0.00 0.00 2.73
4242 6181 2.151502 TTTGGCCACTGAAACTTCCA 57.848 45.000 3.88 0.00 0.00 3.53
4243 6182 2.167487 TGTTTTGGCCACTGAAACTTCC 59.833 45.455 24.79 6.47 35.04 3.46
4256 6195 6.072728 TGACTGATATACAACAGTGTTTTGGC 60.073 38.462 5.57 0.00 45.54 4.52
4263 6202 7.753580 TCGTAGTTTGACTGATATACAACAGTG 59.246 37.037 11.89 0.00 45.54 3.66
4269 6208 7.277098 GCCTTTTCGTAGTTTGACTGATATACA 59.723 37.037 0.00 0.00 0.00 2.29
4270 6209 7.254353 GGCCTTTTCGTAGTTTGACTGATATAC 60.254 40.741 0.00 0.00 0.00 1.47
4271 6210 6.759827 GGCCTTTTCGTAGTTTGACTGATATA 59.240 38.462 0.00 0.00 0.00 0.86
4394 6335 6.817765 TGATAAAAGGTAGGCAGAGTTTTG 57.182 37.500 0.00 0.00 0.00 2.44
4396 6337 6.603599 GGAATGATAAAAGGTAGGCAGAGTTT 59.396 38.462 0.00 0.00 0.00 2.66
4471 6412 1.927487 TTGTCCAGCTTCCATTGCAT 58.073 45.000 0.00 0.00 0.00 3.96
4479 6420 8.538409 AACATTTGAAATATTTGTCCAGCTTC 57.462 30.769 5.17 0.00 0.00 3.86
4507 6448 0.468029 AAGGGGCCAATATTCTGCCG 60.468 55.000 15.84 0.00 46.31 5.69
4589 6530 8.324306 AGTCTGATTTGTCCATTTAGAAGATCA 58.676 33.333 0.00 0.00 0.00 2.92
4590 6531 8.729805 AGTCTGATTTGTCCATTTAGAAGATC 57.270 34.615 0.00 0.00 0.00 2.75
4603 6544 7.862873 CCTTTCAAAGGTTTAGTCTGATTTGTC 59.137 37.037 8.18 0.00 43.95 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.