Multiple sequence alignment - TraesCS2A01G185800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G185800 chr2A 100.000 3916 0 0 1 3916 147464173 147460258 0.000000e+00 7232.0
1 TraesCS2A01G185800 chr2A 86.486 74 7 3 3758 3829 4218313 4218241 1.170000e-10 78.7
2 TraesCS2A01G185800 chr2A 100.000 35 0 0 3708 3742 147460425 147460391 9.080000e-07 65.8
3 TraesCS2A01G185800 chr2A 100.000 35 0 0 3749 3783 147460466 147460432 9.080000e-07 65.8
4 TraesCS2A01G185800 chr2D 93.962 3627 136 28 2 3614 153804632 153808189 0.000000e+00 5408.0
5 TraesCS2A01G185800 chr2B 94.767 1758 74 7 1860 3614 211378033 211379775 0.000000e+00 2721.0
6 TraesCS2A01G185800 chr2B 91.951 1702 79 25 155 1834 211376383 211378048 0.000000e+00 2331.0
7 TraesCS2A01G185800 chr4A 75.795 975 183 29 1969 2906 63009130 63010088 9.980000e-121 444.0
8 TraesCS2A01G185800 chr4A 80.899 267 44 6 3479 3741 541366920 541367183 1.840000e-48 204.0
9 TraesCS2A01G185800 chr4A 100.000 32 0 0 3793 3824 468756190 468756221 4.230000e-05 60.2
10 TraesCS2A01G185800 chr4D 75.590 975 185 29 1969 2906 405306092 405307050 2.160000e-117 433.0
11 TraesCS2A01G185800 chr4D 100.000 32 0 0 3793 3824 107436646 107436615 4.230000e-05 60.2
12 TraesCS2A01G185800 chr4D 90.476 42 1 2 3781 3821 247285391 247285352 7.000000e-03 52.8
13 TraesCS2A01G185800 chr4B 75.153 978 190 31 1966 2906 503559250 503560211 1.010000e-110 411.0
14 TraesCS2A01G185800 chr3B 81.852 270 43 5 3477 3742 254192879 254193146 5.090000e-54 222.0
15 TraesCS2A01G185800 chr3B 81.618 272 44 4 3475 3742 755478793 755478524 1.830000e-53 220.0
16 TraesCS2A01G185800 chr6B 80.741 270 45 6 3476 3741 628238616 628238882 1.840000e-48 204.0
17 TraesCS2A01G185800 chr7D 82.008 239 37 5 3479 3713 555059207 555059443 8.580000e-47 198.0
18 TraesCS2A01G185800 chr3D 82.008 239 37 4 3479 3713 475549956 475549720 8.580000e-47 198.0
19 TraesCS2A01G185800 chr6D 81.513 238 37 5 3479 3713 472496017 472495784 5.170000e-44 189.0
20 TraesCS2A01G185800 chr5D 90.476 63 4 2 3763 3824 297315021 297315082 9.020000e-12 82.4
21 TraesCS2A01G185800 chr5A 87.302 63 4 4 3763 3824 401755562 401755503 7.020000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G185800 chr2A 147460258 147464173 3915 True 2454.533333 7232 100.000 1 3916 3 chr2A.!!$R2 3915
1 TraesCS2A01G185800 chr2D 153804632 153808189 3557 False 5408.000000 5408 93.962 2 3614 1 chr2D.!!$F1 3612
2 TraesCS2A01G185800 chr2B 211376383 211379775 3392 False 2526.000000 2721 93.359 155 3614 2 chr2B.!!$F1 3459
3 TraesCS2A01G185800 chr4A 63009130 63010088 958 False 444.000000 444 75.795 1969 2906 1 chr4A.!!$F1 937
4 TraesCS2A01G185800 chr4D 405306092 405307050 958 False 433.000000 433 75.590 1969 2906 1 chr4D.!!$F1 937
5 TraesCS2A01G185800 chr4B 503559250 503560211 961 False 411.000000 411 75.153 1966 2906 1 chr4B.!!$F1 940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.614979 AAGAGAGGTAGCGAGCCCAA 60.615 55.000 0.00 0.0 0.00 4.12 F
543 560 0.739561 AGTGTTCGCCTACGGATCTC 59.260 55.000 0.00 0.0 40.63 2.75 F
1056 1088 1.078567 CCTGTCCTTGCTGAGCTCC 60.079 63.158 12.15 0.0 0.00 4.70 F
1833 1872 0.036010 AGCTGACACGGCTGCTATTT 60.036 50.000 1.95 0.0 45.19 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 1852 0.036010 AATAGCAGCCGTGTCAGCTT 60.036 50.000 0.00 0.00 38.95 3.74 R
1814 1853 0.036010 AAATAGCAGCCGTGTCAGCT 60.036 50.000 0.00 0.00 42.70 4.24 R
2139 2179 2.271800 GAACATGGAGGTGATGTCGTC 58.728 52.381 0.00 0.00 32.74 4.20 R
3811 3914 0.171903 CGATTGCAAGGGCCTCTTTG 59.828 55.000 6.46 2.11 40.13 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.659830 ATTACAAGAACGAAAATACAACTGTTC 57.340 29.630 0.00 0.00 36.77 3.18
43 44 6.687081 AGAACGAAAATACAACTGTTCCAA 57.313 33.333 0.00 0.00 37.11 3.53
57 58 4.136796 CTGTTCCAACAACATTCAGGAGA 58.863 43.478 0.00 0.00 38.66 3.71
79 80 1.066454 GAGGAAAGAGAGGTAGCGAGC 59.934 57.143 0.00 0.00 0.00 5.03
83 84 0.614979 AAGAGAGGTAGCGAGCCCAA 60.615 55.000 0.00 0.00 0.00 4.12
85 86 2.202756 GAGGTAGCGAGCCCAACG 60.203 66.667 0.00 0.00 0.00 4.10
99 100 1.732917 CAACGCACTGCCAGGAAAA 59.267 52.632 0.00 0.00 0.00 2.29
101 102 0.751643 AACGCACTGCCAGGAAAACT 60.752 50.000 0.00 0.00 0.00 2.66
104 105 1.878102 CGCACTGCCAGGAAAACTACT 60.878 52.381 0.00 0.00 0.00 2.57
107 108 1.168714 CTGCCAGGAAAACTACTGCC 58.831 55.000 0.00 0.00 33.43 4.85
126 127 1.021390 CCTTGCTCGCCATCGAAACT 61.021 55.000 0.00 0.00 44.98 2.66
217 223 3.607370 GAAGCGGGGCGTCCTTCTT 62.607 63.158 5.77 9.67 31.28 2.52
241 247 1.725557 GCGTCAGGCGAGACATAGGA 61.726 60.000 0.00 0.00 44.77 2.94
275 281 1.806542 CCACCCAAAATCGACTGACAG 59.193 52.381 0.00 0.00 0.00 3.51
276 282 2.549992 CCACCCAAAATCGACTGACAGA 60.550 50.000 10.08 0.00 0.00 3.41
277 283 2.480419 CACCCAAAATCGACTGACAGAC 59.520 50.000 10.08 1.49 0.00 3.51
278 284 2.104111 ACCCAAAATCGACTGACAGACA 59.896 45.455 10.08 0.00 0.00 3.41
301 307 2.158841 GCAACGATTTTTCAGTCGCCTA 59.841 45.455 0.00 0.00 41.31 3.93
382 393 2.042686 AAGACTGCTCAGTTTGTGCA 57.957 45.000 3.83 5.79 43.51 4.57
491 508 2.606961 GCACACTGCGCTACTGCAA 61.607 57.895 9.73 0.00 45.74 4.08
543 560 0.739561 AGTGTTCGCCTACGGATCTC 59.260 55.000 0.00 0.00 40.63 2.75
548 565 3.004419 TGTTCGCCTACGGATCTCATTAG 59.996 47.826 0.00 0.00 40.63 1.73
549 566 2.860009 TCGCCTACGGATCTCATTAGT 58.140 47.619 0.00 0.00 40.63 2.24
550 567 4.011966 TCGCCTACGGATCTCATTAGTA 57.988 45.455 0.00 0.00 40.63 1.82
663 682 4.222145 AGCCGTTCCACTACATCTTTTAGA 59.778 41.667 0.00 0.00 0.00 2.10
750 769 1.278238 GCCGGCATCGTATATACAGC 58.722 55.000 24.80 12.23 33.95 4.40
801 826 3.226346 TCAGAAATGGACGAACGGTAG 57.774 47.619 0.00 0.00 0.00 3.18
802 827 1.659098 CAGAAATGGACGAACGGTAGC 59.341 52.381 0.00 0.00 0.00 3.58
805 830 3.711541 ATGGACGAACGGTAGCGCC 62.712 63.158 15.35 7.61 0.00 6.53
806 831 4.424566 GGACGAACGGTAGCGCCA 62.425 66.667 15.35 0.00 36.97 5.69
807 832 2.431260 GACGAACGGTAGCGCCAA 60.431 61.111 15.35 0.00 36.97 4.52
808 833 2.431942 ACGAACGGTAGCGCCAAG 60.432 61.111 15.35 6.20 36.97 3.61
809 834 3.186047 CGAACGGTAGCGCCAAGG 61.186 66.667 15.35 0.00 36.97 3.61
810 835 3.497031 GAACGGTAGCGCCAAGGC 61.497 66.667 15.35 0.00 36.97 4.35
873 901 2.027073 GATGACAACACGCCGAGCA 61.027 57.895 0.00 0.00 0.00 4.26
877 905 1.841663 GACAACACGCCGAGCAATGT 61.842 55.000 0.00 0.00 0.00 2.71
890 918 4.201812 CCGAGCAATGTCGTTAATCACATT 60.202 41.667 8.47 8.47 42.73 2.71
902 930 6.807720 TCGTTAATCACATTGTTAAGCTACGA 59.192 34.615 0.00 0.00 0.00 3.43
926 954 8.110612 CGACTTATATAAATCGAATGGCACATC 58.889 37.037 18.84 0.00 39.15 3.06
952 984 2.565841 GTACACCCATCAAGGCATCTC 58.434 52.381 0.00 0.00 35.39 2.75
1056 1088 1.078567 CCTGTCCTTGCTGAGCTCC 60.079 63.158 12.15 0.00 0.00 4.70
1101 1136 1.573829 CGGTGTTCCCCGTCAATGTG 61.574 60.000 0.00 0.00 43.07 3.21
1536 1571 2.978018 GCCTTTGTACCAGCACCGC 61.978 63.158 0.00 0.00 0.00 5.68
1813 1852 1.962306 GACGCACCGGGTAAGCAAA 60.962 57.895 6.32 0.00 0.00 3.68
1814 1853 1.508808 GACGCACCGGGTAAGCAAAA 61.509 55.000 6.32 0.00 0.00 2.44
1833 1872 0.036010 AGCTGACACGGCTGCTATTT 60.036 50.000 1.95 0.00 45.19 1.40
1846 1885 1.548269 TGCTATTTCCCCCGCAAAAAG 59.452 47.619 0.00 0.00 0.00 2.27
1850 1889 3.847671 ATTTCCCCCGCAAAAAGAAAA 57.152 38.095 0.00 0.00 30.86 2.29
1851 1890 2.900716 TTCCCCCGCAAAAAGAAAAG 57.099 45.000 0.00 0.00 0.00 2.27
1852 1891 2.074729 TCCCCCGCAAAAAGAAAAGA 57.925 45.000 0.00 0.00 0.00 2.52
1853 1892 1.960689 TCCCCCGCAAAAAGAAAAGAG 59.039 47.619 0.00 0.00 0.00 2.85
1854 1893 1.960689 CCCCCGCAAAAAGAAAAGAGA 59.039 47.619 0.00 0.00 0.00 3.10
1859 1898 5.006649 CCCCGCAAAAAGAAAAGAGAAAAAG 59.993 40.000 0.00 0.00 0.00 2.27
1876 1915 6.762333 AGAAAAAGACATGGCTGCTATTTTT 58.238 32.000 0.00 4.49 0.00 1.94
1877 1916 6.647895 AGAAAAAGACATGGCTGCTATTTTTG 59.352 34.615 11.72 0.00 0.00 2.44
2139 2179 1.656818 GGTGGTGGCCAACATCATCG 61.657 60.000 29.64 0.00 43.30 3.84
2619 2689 1.059369 CGGGTGTACGACTACGACG 59.941 63.158 0.00 0.00 42.66 5.12
2914 2984 1.537814 ATGTGCGACCTGGTTCGGTA 61.538 55.000 16.50 1.66 39.50 4.02
2915 2985 1.445582 GTGCGACCTGGTTCGGTAG 60.446 63.158 16.50 0.00 39.50 3.18
2916 2986 2.508663 GCGACCTGGTTCGGTAGC 60.509 66.667 16.50 0.00 45.90 3.58
2918 2988 2.693762 CGACCTGGTTCGGTAGCGA 61.694 63.158 13.94 13.94 37.42 4.93
2928 2998 2.183555 GGTAGCGACCCGACAAGG 59.816 66.667 4.34 0.00 40.23 3.61
2974 3044 0.801251 GTGTGCCAACTCTGAGCATC 59.199 55.000 4.19 0.00 39.04 3.91
3066 3157 3.000122 CCTTTTTGTTGTGTGATTGTGCG 60.000 43.478 0.00 0.00 0.00 5.34
3067 3158 2.200792 TTTGTTGTGTGATTGTGCGG 57.799 45.000 0.00 0.00 0.00 5.69
3068 3159 1.383523 TTGTTGTGTGATTGTGCGGA 58.616 45.000 0.00 0.00 0.00 5.54
3069 3160 0.943673 TGTTGTGTGATTGTGCGGAG 59.056 50.000 0.00 0.00 0.00 4.63
3070 3161 1.225855 GTTGTGTGATTGTGCGGAGA 58.774 50.000 0.00 0.00 0.00 3.71
3071 3162 1.601903 GTTGTGTGATTGTGCGGAGAA 59.398 47.619 0.00 0.00 0.00 2.87
3072 3163 2.183478 TGTGTGATTGTGCGGAGAAT 57.817 45.000 0.00 0.00 0.00 2.40
3073 3164 3.326836 TGTGTGATTGTGCGGAGAATA 57.673 42.857 0.00 0.00 0.00 1.75
3074 3165 3.000041 TGTGTGATTGTGCGGAGAATAC 59.000 45.455 0.00 0.00 0.00 1.89
3075 3166 3.262420 GTGTGATTGTGCGGAGAATACT 58.738 45.455 0.00 0.00 0.00 2.12
3076 3167 4.081917 TGTGTGATTGTGCGGAGAATACTA 60.082 41.667 0.00 0.00 0.00 1.82
3077 3168 4.267928 GTGTGATTGTGCGGAGAATACTAC 59.732 45.833 0.00 0.92 0.00 2.73
3078 3169 3.802685 GTGATTGTGCGGAGAATACTACC 59.197 47.826 0.00 0.00 0.00 3.18
3079 3170 3.449377 TGATTGTGCGGAGAATACTACCA 59.551 43.478 0.00 0.00 0.00 3.25
3080 3171 3.520290 TTGTGCGGAGAATACTACCAG 57.480 47.619 0.00 0.00 0.00 4.00
3081 3172 1.136305 TGTGCGGAGAATACTACCAGC 59.864 52.381 0.00 0.00 0.00 4.85
3082 3173 1.136305 GTGCGGAGAATACTACCAGCA 59.864 52.381 0.00 0.00 33.63 4.41
3083 3174 1.409064 TGCGGAGAATACTACCAGCAG 59.591 52.381 0.00 0.00 32.83 4.24
3084 3175 1.409427 GCGGAGAATACTACCAGCAGT 59.591 52.381 0.00 0.00 0.00 4.40
3085 3176 2.799917 GCGGAGAATACTACCAGCAGTG 60.800 54.545 0.00 0.00 0.00 3.66
3086 3177 2.799917 CGGAGAATACTACCAGCAGTGC 60.800 54.545 7.13 7.13 0.00 4.40
3250 3342 8.382875 GCTTGATTTGATTAAAGTAATGCCAAC 58.617 33.333 0.00 0.00 0.00 3.77
3298 3390 2.359376 TCCTCCTGGAATTTCCTCCA 57.641 50.000 16.25 0.00 43.45 3.86
3300 3392 3.201363 TCCTCCTGGAATTTCCTCCATT 58.799 45.455 16.25 0.00 44.59 3.16
3301 3393 4.379875 TCCTCCTGGAATTTCCTCCATTA 58.620 43.478 16.25 0.00 44.59 1.90
3302 3394 4.984268 TCCTCCTGGAATTTCCTCCATTAT 59.016 41.667 16.25 0.00 44.59 1.28
3303 3395 5.073691 TCCTCCTGGAATTTCCTCCATTATC 59.926 44.000 16.25 0.00 44.59 1.75
3304 3396 4.973168 TCCTGGAATTTCCTCCATTATCG 58.027 43.478 16.25 0.00 44.59 2.92
3305 3397 3.503748 CCTGGAATTTCCTCCATTATCGC 59.496 47.826 16.25 0.00 44.59 4.58
3306 3398 4.392940 CTGGAATTTCCTCCATTATCGCT 58.607 43.478 16.25 0.00 44.59 4.93
3307 3399 4.792068 TGGAATTTCCTCCATTATCGCTT 58.208 39.130 16.25 0.00 40.71 4.68
3308 3400 5.935945 TGGAATTTCCTCCATTATCGCTTA 58.064 37.500 16.25 0.00 40.71 3.09
3320 3422 9.683069 CTCCATTATCGCTTAATTGCTTATTTT 57.317 29.630 0.00 0.00 0.00 1.82
3346 3448 8.708378 TGAGATATCACATGGACAATAGAGTTT 58.292 33.333 5.32 0.00 0.00 2.66
3427 3530 3.496884 TGACATCGGCTGAAGTGTAAAAC 59.503 43.478 8.40 0.00 0.00 2.43
3431 3534 4.966965 TCGGCTGAAGTGTAAAACAAAA 57.033 36.364 0.00 0.00 0.00 2.44
3432 3535 5.312120 TCGGCTGAAGTGTAAAACAAAAA 57.688 34.783 0.00 0.00 0.00 1.94
3433 3536 5.336744 TCGGCTGAAGTGTAAAACAAAAAG 58.663 37.500 0.00 0.00 0.00 2.27
3434 3537 4.502645 CGGCTGAAGTGTAAAACAAAAAGG 59.497 41.667 0.00 0.00 0.00 3.11
3438 3541 6.037062 GCTGAAGTGTAAAACAAAAAGGCATT 59.963 34.615 0.00 0.00 0.00 3.56
3495 3598 2.238144 TCTCAGGGCTCCTTTGATTCAG 59.762 50.000 0.00 0.00 0.00 3.02
3616 3719 9.503399 TCTAAGAAATTCTTTGAACTACTTCCC 57.497 33.333 13.89 0.00 35.81 3.97
3617 3720 9.508642 CTAAGAAATTCTTTGAACTACTTCCCT 57.491 33.333 13.89 0.00 37.89 4.20
3618 3721 8.768501 AAGAAATTCTTTGAACTACTTCCCTT 57.231 30.769 1.80 0.00 31.57 3.95
3619 3722 9.862149 AAGAAATTCTTTGAACTACTTCCCTTA 57.138 29.630 1.80 0.00 31.57 2.69
3620 3723 9.508642 AGAAATTCTTTGAACTACTTCCCTTAG 57.491 33.333 0.00 0.00 0.00 2.18
3621 3724 9.286170 GAAATTCTTTGAACTACTTCCCTTAGT 57.714 33.333 0.00 0.00 0.00 2.24
3630 3733 5.265350 CTACTTCCCTTAGTAGTTCCAGC 57.735 47.826 0.00 0.00 41.65 4.85
3631 3734 3.517612 ACTTCCCTTAGTAGTTCCAGCA 58.482 45.455 0.00 0.00 0.00 4.41
3632 3735 4.104831 ACTTCCCTTAGTAGTTCCAGCAT 58.895 43.478 0.00 0.00 0.00 3.79
3633 3736 4.162509 ACTTCCCTTAGTAGTTCCAGCATC 59.837 45.833 0.00 0.00 0.00 3.91
3634 3737 3.039011 TCCCTTAGTAGTTCCAGCATCC 58.961 50.000 0.00 0.00 0.00 3.51
3635 3738 2.771943 CCCTTAGTAGTTCCAGCATCCA 59.228 50.000 0.00 0.00 0.00 3.41
3636 3739 3.432326 CCCTTAGTAGTTCCAGCATCCAC 60.432 52.174 0.00 0.00 0.00 4.02
3637 3740 3.452627 CCTTAGTAGTTCCAGCATCCACT 59.547 47.826 0.00 0.00 0.00 4.00
3638 3741 4.080863 CCTTAGTAGTTCCAGCATCCACTT 60.081 45.833 0.00 0.00 0.00 3.16
3639 3742 5.128827 CCTTAGTAGTTCCAGCATCCACTTA 59.871 44.000 0.00 0.00 0.00 2.24
3640 3743 6.351881 CCTTAGTAGTTCCAGCATCCACTTAA 60.352 42.308 0.00 0.00 0.00 1.85
3641 3744 5.499004 AGTAGTTCCAGCATCCACTTAAA 57.501 39.130 0.00 0.00 0.00 1.52
3642 3745 5.246307 AGTAGTTCCAGCATCCACTTAAAC 58.754 41.667 0.00 0.00 0.00 2.01
3643 3746 3.421844 AGTTCCAGCATCCACTTAAACC 58.578 45.455 0.00 0.00 0.00 3.27
3644 3747 3.153919 GTTCCAGCATCCACTTAAACCA 58.846 45.455 0.00 0.00 0.00 3.67
3645 3748 2.790433 TCCAGCATCCACTTAAACCAC 58.210 47.619 0.00 0.00 0.00 4.16
3646 3749 2.375174 TCCAGCATCCACTTAAACCACT 59.625 45.455 0.00 0.00 0.00 4.00
3647 3750 3.157087 CCAGCATCCACTTAAACCACTT 58.843 45.455 0.00 0.00 0.00 3.16
3648 3751 4.042311 TCCAGCATCCACTTAAACCACTTA 59.958 41.667 0.00 0.00 0.00 2.24
3649 3752 4.396166 CCAGCATCCACTTAAACCACTTAG 59.604 45.833 0.00 0.00 0.00 2.18
3650 3753 5.245531 CAGCATCCACTTAAACCACTTAGA 58.754 41.667 0.00 0.00 0.00 2.10
3651 3754 5.705441 CAGCATCCACTTAAACCACTTAGAA 59.295 40.000 0.00 0.00 0.00 2.10
3652 3755 6.206634 CAGCATCCACTTAAACCACTTAGAAA 59.793 38.462 0.00 0.00 0.00 2.52
3653 3756 6.431234 AGCATCCACTTAAACCACTTAGAAAG 59.569 38.462 0.00 0.00 0.00 2.62
3654 3757 6.349363 GCATCCACTTAAACCACTTAGAAAGG 60.349 42.308 0.00 0.00 0.00 3.11
3655 3758 5.627135 TCCACTTAAACCACTTAGAAAGGG 58.373 41.667 0.00 0.00 0.00 3.95
3656 3759 5.133153 TCCACTTAAACCACTTAGAAAGGGT 59.867 40.000 0.00 0.00 34.74 4.34
3657 3760 5.472478 CCACTTAAACCACTTAGAAAGGGTC 59.528 44.000 0.00 0.00 32.94 4.46
3658 3761 5.472478 CACTTAAACCACTTAGAAAGGGTCC 59.528 44.000 0.00 0.00 32.94 4.46
3659 3762 5.371769 ACTTAAACCACTTAGAAAGGGTCCT 59.628 40.000 0.00 0.00 32.94 3.85
3660 3763 4.808767 AAACCACTTAGAAAGGGTCCTT 57.191 40.909 0.00 0.00 37.98 3.36
3662 3765 4.100279 ACCACTTAGAAAGGGTCCTTTG 57.900 45.455 18.59 7.66 45.16 2.77
3663 3766 3.462205 ACCACTTAGAAAGGGTCCTTTGT 59.538 43.478 18.59 16.68 45.16 2.83
3664 3767 4.079385 ACCACTTAGAAAGGGTCCTTTGTT 60.079 41.667 18.59 9.73 45.16 2.83
3665 3768 4.893524 CCACTTAGAAAGGGTCCTTTGTTT 59.106 41.667 18.59 7.59 45.16 2.83
3666 3769 5.009710 CCACTTAGAAAGGGTCCTTTGTTTC 59.990 44.000 18.59 5.53 45.16 2.78
3667 3770 5.828328 CACTTAGAAAGGGTCCTTTGTTTCT 59.172 40.000 18.59 12.03 45.16 2.52
3668 3771 6.321435 CACTTAGAAAGGGTCCTTTGTTTCTT 59.679 38.462 18.59 0.00 45.16 2.52
3669 3772 6.546403 ACTTAGAAAGGGTCCTTTGTTTCTTC 59.454 38.462 18.59 3.86 45.16 2.87
3670 3773 5.130705 AGAAAGGGTCCTTTGTTTCTTCT 57.869 39.130 18.59 5.98 45.16 2.85
3671 3774 6.262056 AGAAAGGGTCCTTTGTTTCTTCTA 57.738 37.500 18.59 0.00 45.16 2.10
3672 3775 6.853490 AGAAAGGGTCCTTTGTTTCTTCTAT 58.147 36.000 18.59 0.00 45.16 1.98
3673 3776 6.717084 AGAAAGGGTCCTTTGTTTCTTCTATG 59.283 38.462 18.59 0.00 45.16 2.23
3674 3777 5.584551 AGGGTCCTTTGTTTCTTCTATGT 57.415 39.130 0.00 0.00 0.00 2.29
3675 3778 5.953571 AGGGTCCTTTGTTTCTTCTATGTT 58.046 37.500 0.00 0.00 0.00 2.71
3676 3779 5.770162 AGGGTCCTTTGTTTCTTCTATGTTG 59.230 40.000 0.00 0.00 0.00 3.33
3677 3780 5.461526 GGTCCTTTGTTTCTTCTATGTTGC 58.538 41.667 0.00 0.00 0.00 4.17
3678 3781 5.009610 GGTCCTTTGTTTCTTCTATGTTGCA 59.990 40.000 0.00 0.00 0.00 4.08
3679 3782 6.460953 GGTCCTTTGTTTCTTCTATGTTGCAA 60.461 38.462 0.00 0.00 0.00 4.08
3680 3783 7.147976 GTCCTTTGTTTCTTCTATGTTGCAAT 58.852 34.615 0.59 0.00 0.00 3.56
3681 3784 7.327032 GTCCTTTGTTTCTTCTATGTTGCAATC 59.673 37.037 0.59 0.00 0.00 2.67
3682 3785 7.014134 TCCTTTGTTTCTTCTATGTTGCAATCA 59.986 33.333 0.59 3.09 0.00 2.57
3683 3786 7.652909 CCTTTGTTTCTTCTATGTTGCAATCAA 59.347 33.333 0.59 0.00 0.00 2.57
3684 3787 8.939201 TTTGTTTCTTCTATGTTGCAATCAAA 57.061 26.923 0.59 0.00 33.37 2.69
3685 3788 7.928908 TGTTTCTTCTATGTTGCAATCAAAC 57.071 32.000 0.59 4.38 33.37 2.93
3686 3789 7.487484 TGTTTCTTCTATGTTGCAATCAAACA 58.513 30.769 0.59 6.74 33.37 2.83
3687 3790 7.978414 TGTTTCTTCTATGTTGCAATCAAACAA 59.022 29.630 0.59 0.00 33.37 2.83
3688 3791 7.928908 TTCTTCTATGTTGCAATCAAACAAC 57.071 32.000 0.59 0.00 45.06 3.32
3689 3792 6.446318 TCTTCTATGTTGCAATCAAACAACC 58.554 36.000 0.59 0.00 44.38 3.77
3690 3793 5.132897 TCTATGTTGCAATCAAACAACCC 57.867 39.130 0.59 0.00 44.38 4.11
3691 3794 3.834489 ATGTTGCAATCAAACAACCCA 57.166 38.095 0.59 0.00 44.38 4.51
3692 3795 3.616956 TGTTGCAATCAAACAACCCAA 57.383 38.095 0.59 0.00 44.38 4.12
3693 3796 3.942829 TGTTGCAATCAAACAACCCAAA 58.057 36.364 0.59 0.00 44.38 3.28
3694 3797 4.326826 TGTTGCAATCAAACAACCCAAAA 58.673 34.783 0.59 0.00 44.38 2.44
3695 3798 4.946157 TGTTGCAATCAAACAACCCAAAAT 59.054 33.333 0.59 0.00 44.38 1.82
3696 3799 5.065731 TGTTGCAATCAAACAACCCAAAATC 59.934 36.000 0.59 0.00 44.38 2.17
3697 3800 4.133078 TGCAATCAAACAACCCAAAATCC 58.867 39.130 0.00 0.00 0.00 3.01
3698 3801 4.141528 TGCAATCAAACAACCCAAAATCCT 60.142 37.500 0.00 0.00 0.00 3.24
3699 3802 5.070981 TGCAATCAAACAACCCAAAATCCTA 59.929 36.000 0.00 0.00 0.00 2.94
3700 3803 6.172630 GCAATCAAACAACCCAAAATCCTAT 58.827 36.000 0.00 0.00 0.00 2.57
3701 3804 7.038729 TGCAATCAAACAACCCAAAATCCTATA 60.039 33.333 0.00 0.00 0.00 1.31
3702 3805 7.492344 GCAATCAAACAACCCAAAATCCTATAG 59.508 37.037 0.00 0.00 0.00 1.31
3703 3806 7.660030 ATCAAACAACCCAAAATCCTATAGG 57.340 36.000 13.07 13.07 0.00 2.57
3720 3823 7.509546 TCCTATAGGATTGAGATGTTTTGACC 58.490 38.462 18.00 0.00 39.78 4.02
3721 3824 7.348274 TCCTATAGGATTGAGATGTTTTGACCT 59.652 37.037 18.00 0.00 39.78 3.85
3722 3825 7.995488 CCTATAGGATTGAGATGTTTTGACCTT 59.005 37.037 14.11 0.00 37.39 3.50
3723 3826 7.872113 ATAGGATTGAGATGTTTTGACCTTC 57.128 36.000 0.00 0.00 0.00 3.46
3724 3827 5.885465 AGGATTGAGATGTTTTGACCTTCT 58.115 37.500 0.00 0.00 0.00 2.85
3725 3828 7.020827 AGGATTGAGATGTTTTGACCTTCTA 57.979 36.000 0.00 0.00 0.00 2.10
3726 3829 7.461749 AGGATTGAGATGTTTTGACCTTCTAA 58.538 34.615 0.00 0.00 0.00 2.10
3727 3830 8.112183 AGGATTGAGATGTTTTGACCTTCTAAT 58.888 33.333 0.00 0.00 0.00 1.73
3728 3831 8.401709 GGATTGAGATGTTTTGACCTTCTAATC 58.598 37.037 0.00 0.00 0.00 1.75
3729 3832 7.687941 TTGAGATGTTTTGACCTTCTAATCC 57.312 36.000 0.00 0.00 0.00 3.01
3730 3833 7.020827 TGAGATGTTTTGACCTTCTAATCCT 57.979 36.000 0.00 0.00 0.00 3.24
3731 3834 8.146053 TGAGATGTTTTGACCTTCTAATCCTA 57.854 34.615 0.00 0.00 0.00 2.94
3732 3835 8.772250 TGAGATGTTTTGACCTTCTAATCCTAT 58.228 33.333 0.00 0.00 0.00 2.57
3733 3836 8.970859 AGATGTTTTGACCTTCTAATCCTATG 57.029 34.615 0.00 0.00 0.00 2.23
3734 3837 7.500559 AGATGTTTTGACCTTCTAATCCTATGC 59.499 37.037 0.00 0.00 0.00 3.14
3735 3838 5.885912 TGTTTTGACCTTCTAATCCTATGCC 59.114 40.000 0.00 0.00 0.00 4.40
3736 3839 5.975988 TTTGACCTTCTAATCCTATGCCT 57.024 39.130 0.00 0.00 0.00 4.75
3737 3840 5.975988 TTGACCTTCTAATCCTATGCCTT 57.024 39.130 0.00 0.00 0.00 4.35
3738 3841 5.975988 TGACCTTCTAATCCTATGCCTTT 57.024 39.130 0.00 0.00 0.00 3.11
3739 3842 6.327386 TGACCTTCTAATCCTATGCCTTTT 57.673 37.500 0.00 0.00 0.00 2.27
3740 3843 6.357367 TGACCTTCTAATCCTATGCCTTTTC 58.643 40.000 0.00 0.00 0.00 2.29
3741 3844 6.158695 TGACCTTCTAATCCTATGCCTTTTCT 59.841 38.462 0.00 0.00 0.00 2.52
3742 3845 6.360618 ACCTTCTAATCCTATGCCTTTTCTG 58.639 40.000 0.00 0.00 0.00 3.02
3743 3846 6.158695 ACCTTCTAATCCTATGCCTTTTCTGA 59.841 38.462 0.00 0.00 0.00 3.27
3744 3847 7.056635 CCTTCTAATCCTATGCCTTTTCTGAA 58.943 38.462 0.00 0.00 0.00 3.02
3745 3848 7.557719 CCTTCTAATCCTATGCCTTTTCTGAAA 59.442 37.037 0.00 0.00 0.00 2.69
3746 3849 8.877864 TTCTAATCCTATGCCTTTTCTGAAAA 57.122 30.769 14.31 14.31 0.00 2.29
3747 3850 8.877864 TCTAATCCTATGCCTTTTCTGAAAAA 57.122 30.769 15.67 3.01 33.42 1.94
3761 3864 8.702163 TTTTCTGAAAAAGAGATGTTTTGACC 57.298 30.769 12.85 0.00 35.91 4.02
3762 3865 7.645058 TTCTGAAAAAGAGATGTTTTGACCT 57.355 32.000 0.00 0.00 35.91 3.85
3763 3866 7.645058 TCTGAAAAAGAGATGTTTTGACCTT 57.355 32.000 0.00 0.00 29.93 3.50
3764 3867 7.707104 TCTGAAAAAGAGATGTTTTGACCTTC 58.293 34.615 0.00 0.00 29.93 3.46
3765 3868 7.557719 TCTGAAAAAGAGATGTTTTGACCTTCT 59.442 33.333 0.00 0.00 29.93 2.85
3766 3869 8.746052 TGAAAAAGAGATGTTTTGACCTTCTA 57.254 30.769 0.00 0.00 29.93 2.10
3767 3870 9.184523 TGAAAAAGAGATGTTTTGACCTTCTAA 57.815 29.630 0.00 0.00 29.93 2.10
3770 3873 7.929941 AAGAGATGTTTTGACCTTCTAATCC 57.070 36.000 0.00 0.00 0.00 3.01
3771 3874 7.264294 AGAGATGTTTTGACCTTCTAATCCT 57.736 36.000 0.00 0.00 0.00 3.24
3772 3875 8.380742 AGAGATGTTTTGACCTTCTAATCCTA 57.619 34.615 0.00 0.00 0.00 2.94
3773 3876 8.997734 AGAGATGTTTTGACCTTCTAATCCTAT 58.002 33.333 0.00 0.00 0.00 2.57
3774 3877 8.970859 AGATGTTTTGACCTTCTAATCCTATG 57.029 34.615 0.00 0.00 0.00 2.23
3775 3878 7.500559 AGATGTTTTGACCTTCTAATCCTATGC 59.499 37.037 0.00 0.00 0.00 3.14
3776 3879 5.885912 TGTTTTGACCTTCTAATCCTATGCC 59.114 40.000 0.00 0.00 0.00 4.40
3777 3880 5.975988 TTTGACCTTCTAATCCTATGCCT 57.024 39.130 0.00 0.00 0.00 4.75
3778 3881 5.975988 TTGACCTTCTAATCCTATGCCTT 57.024 39.130 0.00 0.00 0.00 4.35
3779 3882 5.975988 TGACCTTCTAATCCTATGCCTTT 57.024 39.130 0.00 0.00 0.00 3.11
3780 3883 6.327386 TGACCTTCTAATCCTATGCCTTTT 57.673 37.500 0.00 0.00 0.00 2.27
3781 3884 6.357367 TGACCTTCTAATCCTATGCCTTTTC 58.643 40.000 0.00 0.00 0.00 2.29
3782 3885 6.158695 TGACCTTCTAATCCTATGCCTTTTCT 59.841 38.462 0.00 0.00 0.00 2.52
3783 3886 7.347222 TGACCTTCTAATCCTATGCCTTTTCTA 59.653 37.037 0.00 0.00 0.00 2.10
3784 3887 8.281529 ACCTTCTAATCCTATGCCTTTTCTAT 57.718 34.615 0.00 0.00 0.00 1.98
3785 3888 8.728098 ACCTTCTAATCCTATGCCTTTTCTATT 58.272 33.333 0.00 0.00 0.00 1.73
3786 3889 9.225436 CCTTCTAATCCTATGCCTTTTCTATTC 57.775 37.037 0.00 0.00 0.00 1.75
3787 3890 9.225436 CTTCTAATCCTATGCCTTTTCTATTCC 57.775 37.037 0.00 0.00 0.00 3.01
3788 3891 7.690256 TCTAATCCTATGCCTTTTCTATTCCC 58.310 38.462 0.00 0.00 0.00 3.97
3789 3892 5.930209 ATCCTATGCCTTTTCTATTCCCA 57.070 39.130 0.00 0.00 0.00 4.37
3790 3893 5.725551 TCCTATGCCTTTTCTATTCCCAA 57.274 39.130 0.00 0.00 0.00 4.12
3791 3894 5.694995 TCCTATGCCTTTTCTATTCCCAAG 58.305 41.667 0.00 0.00 0.00 3.61
3792 3895 5.193728 TCCTATGCCTTTTCTATTCCCAAGT 59.806 40.000 0.00 0.00 0.00 3.16
3793 3896 5.893824 CCTATGCCTTTTCTATTCCCAAGTT 59.106 40.000 0.00 0.00 0.00 2.66
3794 3897 6.381133 CCTATGCCTTTTCTATTCCCAAGTTT 59.619 38.462 0.00 0.00 0.00 2.66
3795 3898 6.686484 ATGCCTTTTCTATTCCCAAGTTTT 57.314 33.333 0.00 0.00 0.00 2.43
3796 3899 6.493189 TGCCTTTTCTATTCCCAAGTTTTT 57.507 33.333 0.00 0.00 0.00 1.94
3797 3900 7.604657 TGCCTTTTCTATTCCCAAGTTTTTA 57.395 32.000 0.00 0.00 0.00 1.52
3798 3901 7.666623 TGCCTTTTCTATTCCCAAGTTTTTAG 58.333 34.615 0.00 0.00 0.00 1.85
3799 3902 7.507616 TGCCTTTTCTATTCCCAAGTTTTTAGA 59.492 33.333 0.00 0.00 0.00 2.10
3800 3903 8.364894 GCCTTTTCTATTCCCAAGTTTTTAGAA 58.635 33.333 0.00 0.00 0.00 2.10
3804 3907 9.822727 TTTCTATTCCCAAGTTTTTAGAATCCT 57.177 29.630 0.00 0.00 0.00 3.24
3805 3908 8.807948 TCTATTCCCAAGTTTTTAGAATCCTG 57.192 34.615 0.00 0.00 0.00 3.86
3806 3909 5.722021 TTCCCAAGTTTTTAGAATCCTGC 57.278 39.130 0.00 0.00 0.00 4.85
3807 3910 4.735369 TCCCAAGTTTTTAGAATCCTGCA 58.265 39.130 0.00 0.00 0.00 4.41
3808 3911 5.144100 TCCCAAGTTTTTAGAATCCTGCAA 58.856 37.500 0.00 0.00 0.00 4.08
3809 3912 5.600484 TCCCAAGTTTTTAGAATCCTGCAAA 59.400 36.000 0.00 0.00 0.00 3.68
3810 3913 6.269769 TCCCAAGTTTTTAGAATCCTGCAAAT 59.730 34.615 0.00 0.00 0.00 2.32
3811 3914 6.591448 CCCAAGTTTTTAGAATCCTGCAAATC 59.409 38.462 0.00 0.00 0.00 2.17
3812 3915 7.153985 CCAAGTTTTTAGAATCCTGCAAATCA 58.846 34.615 0.00 0.00 0.00 2.57
3813 3916 7.656948 CCAAGTTTTTAGAATCCTGCAAATCAA 59.343 33.333 0.00 0.00 0.00 2.57
3814 3917 9.044150 CAAGTTTTTAGAATCCTGCAAATCAAA 57.956 29.630 0.00 0.00 0.00 2.69
3815 3918 8.822652 AGTTTTTAGAATCCTGCAAATCAAAG 57.177 30.769 0.00 0.00 0.00 2.77
3816 3919 8.641541 AGTTTTTAGAATCCTGCAAATCAAAGA 58.358 29.630 0.00 0.00 0.00 2.52
3817 3920 8.919661 GTTTTTAGAATCCTGCAAATCAAAGAG 58.080 33.333 0.00 0.00 0.00 2.85
3818 3921 6.764308 TTAGAATCCTGCAAATCAAAGAGG 57.236 37.500 0.00 0.00 0.00 3.69
3819 3922 3.446516 AGAATCCTGCAAATCAAAGAGGC 59.553 43.478 0.00 0.00 0.00 4.70
3820 3923 1.549203 TCCTGCAAATCAAAGAGGCC 58.451 50.000 0.00 0.00 0.00 5.19
3821 3924 0.533951 CCTGCAAATCAAAGAGGCCC 59.466 55.000 0.00 0.00 0.00 5.80
3822 3925 1.553706 CTGCAAATCAAAGAGGCCCT 58.446 50.000 0.00 0.00 0.00 5.19
3823 3926 1.897802 CTGCAAATCAAAGAGGCCCTT 59.102 47.619 0.00 0.00 36.47 3.95
3824 3927 1.619827 TGCAAATCAAAGAGGCCCTTG 59.380 47.619 0.00 0.56 34.79 3.61
3825 3928 1.673923 GCAAATCAAAGAGGCCCTTGC 60.674 52.381 0.00 0.00 34.79 4.01
3826 3929 1.619827 CAAATCAAAGAGGCCCTTGCA 59.380 47.619 0.00 0.00 40.13 4.08
3827 3930 2.014010 AATCAAAGAGGCCCTTGCAA 57.986 45.000 0.00 0.00 40.13 4.08
3828 3931 2.242882 ATCAAAGAGGCCCTTGCAAT 57.757 45.000 0.00 0.00 40.13 3.56
3829 3932 1.549203 TCAAAGAGGCCCTTGCAATC 58.451 50.000 0.00 0.00 40.13 2.67
3830 3933 0.171903 CAAAGAGGCCCTTGCAATCG 59.828 55.000 0.00 0.00 40.13 3.34
3831 3934 1.598701 AAAGAGGCCCTTGCAATCGC 61.599 55.000 0.00 4.29 40.13 4.58
3842 3945 2.276472 TGCAATCGCATGTTAAAGGC 57.724 45.000 0.00 0.00 45.36 4.35
3843 3946 1.543358 TGCAATCGCATGTTAAAGGCA 59.457 42.857 0.00 0.00 45.36 4.75
3844 3947 2.029560 TGCAATCGCATGTTAAAGGCAA 60.030 40.909 0.00 0.00 45.36 4.52
3845 3948 2.345341 GCAATCGCATGTTAAAGGCAAC 59.655 45.455 0.00 0.00 38.36 4.17
3846 3949 3.918555 GCAATCGCATGTTAAAGGCAACT 60.919 43.478 0.00 0.00 45.30 3.16
3847 3950 5.715507 GCAATCGCATGTTAAAGGCAACTC 61.716 45.833 0.00 0.00 43.06 3.01
3858 3961 2.641197 GGCAACTCGAAATGTGGGT 58.359 52.632 0.00 0.00 0.00 4.51
3859 3962 0.521735 GGCAACTCGAAATGTGGGTC 59.478 55.000 0.00 0.00 0.00 4.46
3860 3963 1.234821 GCAACTCGAAATGTGGGTCA 58.765 50.000 0.00 0.00 0.00 4.02
3861 3964 1.069227 GCAACTCGAAATGTGGGTCAC 60.069 52.381 0.00 0.00 34.56 3.67
3862 3965 1.535462 CAACTCGAAATGTGGGTCACC 59.465 52.381 0.00 0.00 32.73 4.02
3863 3966 0.762418 ACTCGAAATGTGGGTCACCA 59.238 50.000 0.00 0.00 46.94 4.17
3873 3976 2.765689 TGGGTCACCAAAATGGAACT 57.234 45.000 2.85 0.00 45.87 3.01
3874 3977 3.039252 TGGGTCACCAAAATGGAACTT 57.961 42.857 2.85 0.00 45.87 2.66
3875 3978 2.962421 TGGGTCACCAAAATGGAACTTC 59.038 45.455 2.85 0.36 45.87 3.01
3876 3979 3.230976 GGGTCACCAAAATGGAACTTCT 58.769 45.455 2.85 0.00 40.96 2.85
3877 3980 3.641436 GGGTCACCAAAATGGAACTTCTT 59.359 43.478 2.85 0.00 40.96 2.52
3878 3981 4.830600 GGGTCACCAAAATGGAACTTCTTA 59.169 41.667 2.85 0.00 40.96 2.10
3879 3982 5.303333 GGGTCACCAAAATGGAACTTCTTAA 59.697 40.000 2.85 0.00 40.96 1.85
3880 3983 6.183360 GGGTCACCAAAATGGAACTTCTTAAA 60.183 38.462 2.85 0.00 40.96 1.52
3881 3984 7.441836 GGTCACCAAAATGGAACTTCTTAAAT 58.558 34.615 2.85 0.00 40.96 1.40
3882 3985 7.384932 GGTCACCAAAATGGAACTTCTTAAATG 59.615 37.037 2.85 0.00 40.96 2.32
3883 3986 7.926018 GTCACCAAAATGGAACTTCTTAAATGT 59.074 33.333 2.85 0.00 40.96 2.71
3884 3987 8.141268 TCACCAAAATGGAACTTCTTAAATGTC 58.859 33.333 2.85 0.00 40.96 3.06
3885 3988 8.143835 CACCAAAATGGAACTTCTTAAATGTCT 58.856 33.333 2.85 0.00 40.96 3.41
3886 3989 8.143835 ACCAAAATGGAACTTCTTAAATGTCTG 58.856 33.333 2.85 0.00 40.96 3.51
3887 3990 8.143835 CCAAAATGGAACTTCTTAAATGTCTGT 58.856 33.333 0.00 0.00 40.96 3.41
3888 3991 8.971321 CAAAATGGAACTTCTTAAATGTCTGTG 58.029 33.333 0.00 0.00 0.00 3.66
3889 3992 6.824305 ATGGAACTTCTTAAATGTCTGTGG 57.176 37.500 0.00 0.00 0.00 4.17
3890 3993 5.070001 TGGAACTTCTTAAATGTCTGTGGG 58.930 41.667 0.00 0.00 0.00 4.61
3891 3994 4.459337 GGAACTTCTTAAATGTCTGTGGGG 59.541 45.833 0.00 0.00 0.00 4.96
3892 3995 4.993705 ACTTCTTAAATGTCTGTGGGGA 57.006 40.909 0.00 0.00 0.00 4.81
3893 3996 5.520748 ACTTCTTAAATGTCTGTGGGGAT 57.479 39.130 0.00 0.00 0.00 3.85
3894 3997 6.636454 ACTTCTTAAATGTCTGTGGGGATA 57.364 37.500 0.00 0.00 0.00 2.59
3895 3998 6.653989 ACTTCTTAAATGTCTGTGGGGATAG 58.346 40.000 0.00 0.00 0.00 2.08
3896 3999 5.630415 TCTTAAATGTCTGTGGGGATAGG 57.370 43.478 0.00 0.00 0.00 2.57
3897 4000 4.412199 TCTTAAATGTCTGTGGGGATAGGG 59.588 45.833 0.00 0.00 0.00 3.53
3898 4001 2.286935 AATGTCTGTGGGGATAGGGT 57.713 50.000 0.00 0.00 0.00 4.34
3899 4002 1.511613 ATGTCTGTGGGGATAGGGTG 58.488 55.000 0.00 0.00 0.00 4.61
3900 4003 0.620410 TGTCTGTGGGGATAGGGTGG 60.620 60.000 0.00 0.00 0.00 4.61
3901 4004 0.326238 GTCTGTGGGGATAGGGTGGA 60.326 60.000 0.00 0.00 0.00 4.02
3902 4005 0.031111 TCTGTGGGGATAGGGTGGAG 60.031 60.000 0.00 0.00 0.00 3.86
3903 4006 1.004230 TGTGGGGATAGGGTGGAGG 59.996 63.158 0.00 0.00 0.00 4.30
3904 4007 2.039831 TGGGGATAGGGTGGAGGC 60.040 66.667 0.00 0.00 0.00 4.70
3905 4008 2.039831 GGGGATAGGGTGGAGGCA 60.040 66.667 0.00 0.00 0.00 4.75
3906 4009 1.696314 GGGGATAGGGTGGAGGCAA 60.696 63.158 0.00 0.00 0.00 4.52
3907 4010 1.068352 GGGGATAGGGTGGAGGCAAT 61.068 60.000 0.00 0.00 0.00 3.56
3908 4011 0.402121 GGGATAGGGTGGAGGCAATC 59.598 60.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.187621 TCTTGTAATGGAAAGGGGTAAGG 57.812 43.478 0.00 0.00 0.00 2.69
12 13 8.073768 ACAGTTGTATTTTCGTTCTTGTAATGG 58.926 33.333 0.00 0.00 0.00 3.16
40 41 3.755378 CCTCTTCTCCTGAATGTTGTTGG 59.245 47.826 0.00 0.00 0.00 3.77
43 44 4.982241 TTCCTCTTCTCCTGAATGTTGT 57.018 40.909 0.00 0.00 0.00 3.32
57 58 3.020984 CTCGCTACCTCTCTTTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
79 80 4.641645 TCCTGGCAGTGCGTTGGG 62.642 66.667 14.43 8.34 0.00 4.12
83 84 0.107831 TAGTTTTCCTGGCAGTGCGT 59.892 50.000 14.43 0.00 0.00 5.24
85 86 1.537202 CAGTAGTTTTCCTGGCAGTGC 59.463 52.381 14.43 6.55 0.00 4.40
99 100 2.266055 GCGAGCAAGGGCAGTAGT 59.734 61.111 0.00 0.00 44.61 2.73
101 102 2.593468 GATGGCGAGCAAGGGCAGTA 62.593 60.000 0.00 0.00 43.57 2.74
126 127 4.467082 TCAGGTTTTCGCCCAATAGTACTA 59.533 41.667 4.77 4.77 0.00 1.82
207 213 1.675524 GACGCGAGAAAGAAGGACGC 61.676 60.000 15.93 0.00 44.64 5.19
241 247 2.669240 GTGGTAAAGAGGGGCGCT 59.331 61.111 7.64 2.69 0.00 5.92
275 281 3.599514 CGACTGAAAAATCGTTGCATGTC 59.400 43.478 0.00 0.00 33.63 3.06
276 282 3.554524 CGACTGAAAAATCGTTGCATGT 58.445 40.909 0.00 0.00 33.63 3.21
277 283 2.339400 GCGACTGAAAAATCGTTGCATG 59.661 45.455 0.00 0.00 40.49 4.06
278 284 2.584791 GCGACTGAAAAATCGTTGCAT 58.415 42.857 0.00 0.00 40.49 3.96
301 307 0.536006 GCCCGGATTTGCTAGCTCAT 60.536 55.000 17.23 7.62 0.00 2.90
382 393 5.835113 AGTAAATTGCATAGGCGAAACAT 57.165 34.783 0.00 0.00 45.35 2.71
491 508 3.377172 GGCTATTTTAATGCCGTCACAGT 59.623 43.478 0.00 0.00 37.11 3.55
543 560 6.591834 GGCCTGCTGATTGTACTATACTAATG 59.408 42.308 0.00 0.00 0.00 1.90
548 565 3.243771 ACGGCCTGCTGATTGTACTATAC 60.244 47.826 4.70 0.00 0.00 1.47
549 566 2.963101 ACGGCCTGCTGATTGTACTATA 59.037 45.455 4.70 0.00 0.00 1.31
550 567 1.762957 ACGGCCTGCTGATTGTACTAT 59.237 47.619 4.70 0.00 0.00 2.12
663 682 4.891168 ACGTTTTCTATTGGGTTTCTTGGT 59.109 37.500 0.00 0.00 0.00 3.67
750 769 4.084537 GGTTTCGTGGCGTATTATCTCATG 60.085 45.833 0.00 0.00 0.00 3.07
805 830 1.138247 GCTCTTTCATGGCGCCTTG 59.862 57.895 31.02 31.02 0.00 3.61
806 831 2.048603 GGCTCTTTCATGGCGCCTT 61.049 57.895 29.70 19.97 37.76 4.35
807 832 2.439156 GGCTCTTTCATGGCGCCT 60.439 61.111 29.70 10.60 37.76 5.52
808 833 2.751436 TGGCTCTTTCATGGCGCC 60.751 61.111 22.73 22.73 41.06 6.53
809 834 1.589716 AAGTGGCTCTTTCATGGCGC 61.590 55.000 0.00 0.00 39.14 6.53
810 835 0.169672 CAAGTGGCTCTTTCATGGCG 59.830 55.000 0.00 0.00 33.63 5.69
811 836 0.529378 CCAAGTGGCTCTTTCATGGC 59.471 55.000 0.00 0.00 33.63 4.40
812 837 2.089980 CTCCAAGTGGCTCTTTCATGG 58.910 52.381 0.00 0.00 33.63 3.66
813 838 1.471684 GCTCCAAGTGGCTCTTTCATG 59.528 52.381 0.00 0.00 33.63 3.07
814 839 1.615384 GGCTCCAAGTGGCTCTTTCAT 60.615 52.381 0.00 0.00 33.63 2.57
873 901 7.816640 AGCTTAACAATGTGATTAACGACATT 58.183 30.769 7.73 7.73 42.29 2.71
877 905 6.807720 TCGTAGCTTAACAATGTGATTAACGA 59.192 34.615 0.00 6.19 0.00 3.85
902 930 7.817478 TCGATGTGCCATTCGATTTATATAAGT 59.183 33.333 0.00 0.00 39.29 2.24
932 960 2.565841 GAGATGCCTTGATGGGTGTAC 58.434 52.381 0.00 0.00 36.00 2.90
952 984 1.775039 CGCTGCACCGTATGATTGGG 61.775 60.000 0.00 0.00 0.00 4.12
1536 1571 2.887568 GTGTCGAGCATCAGGCCG 60.888 66.667 0.00 0.00 46.50 6.13
1710 1745 0.100682 CGGTGTACCTCATGTCCTCG 59.899 60.000 0.00 0.00 0.00 4.63
1813 1852 0.036010 AATAGCAGCCGTGTCAGCTT 60.036 50.000 0.00 0.00 38.95 3.74
1814 1853 0.036010 AAATAGCAGCCGTGTCAGCT 60.036 50.000 0.00 0.00 42.70 4.24
1833 1872 1.960689 CTCTTTTCTTTTTGCGGGGGA 59.039 47.619 0.00 0.00 0.00 4.81
1846 1885 4.683320 GCAGCCATGTCTTTTTCTCTTTTC 59.317 41.667 0.00 0.00 0.00 2.29
1850 1889 3.151912 AGCAGCCATGTCTTTTTCTCT 57.848 42.857 0.00 0.00 0.00 3.10
1851 1890 5.573337 AATAGCAGCCATGTCTTTTTCTC 57.427 39.130 0.00 0.00 0.00 2.87
1852 1891 5.990120 AAATAGCAGCCATGTCTTTTTCT 57.010 34.783 0.00 0.00 0.00 2.52
1853 1892 6.619232 GCAAAAATAGCAGCCATGTCTTTTTC 60.619 38.462 0.00 0.00 29.25 2.29
1854 1893 5.179929 GCAAAAATAGCAGCCATGTCTTTTT 59.820 36.000 0.00 0.00 30.52 1.94
1859 1898 2.543641 GGCAAAAATAGCAGCCATGTC 58.456 47.619 0.00 0.00 46.26 3.06
1904 1943 2.895404 ACCTTAGAAACTGAGCCGTGTA 59.105 45.455 0.00 0.00 0.00 2.90
1912 1951 4.141869 GGGCCGTATTACCTTAGAAACTGA 60.142 45.833 0.00 0.00 0.00 3.41
2139 2179 2.271800 GAACATGGAGGTGATGTCGTC 58.728 52.381 0.00 0.00 32.74 4.20
2914 2984 4.070552 GCTCCTTGTCGGGTCGCT 62.071 66.667 0.00 0.00 0.00 4.93
2916 2986 4.796231 CCGCTCCTTGTCGGGTCG 62.796 72.222 0.00 0.00 41.82 4.79
2974 3044 9.225201 CACGTTTGATATGAATGAAAGGTAATG 57.775 33.333 0.00 0.00 35.87 1.90
2975 3045 8.956426 ACACGTTTGATATGAATGAAAGGTAAT 58.044 29.630 0.00 0.00 35.87 1.89
2976 3046 8.330466 ACACGTTTGATATGAATGAAAGGTAA 57.670 30.769 0.00 0.00 35.87 2.85
3066 3157 2.483889 GGCACTGCTGGTAGTATTCTCC 60.484 54.545 0.00 0.00 0.00 3.71
3067 3158 2.168521 TGGCACTGCTGGTAGTATTCTC 59.831 50.000 0.00 0.00 0.00 2.87
3068 3159 2.187958 TGGCACTGCTGGTAGTATTCT 58.812 47.619 0.00 0.00 0.00 2.40
3069 3160 2.691409 TGGCACTGCTGGTAGTATTC 57.309 50.000 0.00 0.00 0.00 1.75
3070 3161 3.652057 AATGGCACTGCTGGTAGTATT 57.348 42.857 0.00 0.00 0.00 1.89
3071 3162 3.652057 AAATGGCACTGCTGGTAGTAT 57.348 42.857 0.00 0.00 0.00 2.12
3072 3163 3.433306 AAAATGGCACTGCTGGTAGTA 57.567 42.857 0.00 0.00 0.00 1.82
3073 3164 2.292828 AAAATGGCACTGCTGGTAGT 57.707 45.000 0.00 0.00 0.00 2.73
3101 3192 9.139174 ACTTCACATTTACAAACAAAGAACAAG 57.861 29.630 0.00 0.00 0.00 3.16
3250 3342 7.697691 AGTAGAAGTTGATTGACACAAACAAG 58.302 34.615 7.26 0.00 0.00 3.16
3294 3386 9.683069 AAAATAAGCAATTAAGCGATAATGGAG 57.317 29.630 4.42 0.00 40.15 3.86
3303 3395 9.882996 TGATATCTCAAAATAAGCAATTAAGCG 57.117 29.630 3.98 0.00 40.15 4.68
3308 3400 9.976511 CCATGTGATATCTCAAAATAAGCAATT 57.023 29.630 11.26 0.00 31.85 2.32
3320 3422 7.846101 ACTCTATTGTCCATGTGATATCTCA 57.154 36.000 9.76 9.76 0.00 3.27
3346 3448 5.044846 AGGAAGCTCTATTGGGCTAAAGAAA 60.045 40.000 0.76 0.00 37.87 2.52
3427 3530 3.132925 CACTTCACCCAATGCCTTTTTG 58.867 45.455 0.00 0.00 0.00 2.44
3431 3534 1.963515 GTTCACTTCACCCAATGCCTT 59.036 47.619 0.00 0.00 0.00 4.35
3432 3535 1.620822 GTTCACTTCACCCAATGCCT 58.379 50.000 0.00 0.00 0.00 4.75
3433 3536 0.240945 CGTTCACTTCACCCAATGCC 59.759 55.000 0.00 0.00 0.00 4.40
3434 3537 0.387239 GCGTTCACTTCACCCAATGC 60.387 55.000 0.00 0.00 0.00 3.56
3438 3541 2.280524 CGGCGTTCACTTCACCCA 60.281 61.111 0.00 0.00 0.00 4.51
3495 3598 5.221126 CCCTAAAACTGCTATGCAAATCCTC 60.221 44.000 0.00 0.00 38.41 3.71
3614 3717 2.771943 TGGATGCTGGAACTACTAAGGG 59.228 50.000 0.00 0.00 0.00 3.95
3615 3718 3.452627 AGTGGATGCTGGAACTACTAAGG 59.547 47.826 0.00 0.00 0.00 2.69
3616 3719 4.744795 AGTGGATGCTGGAACTACTAAG 57.255 45.455 0.00 0.00 0.00 2.18
3617 3720 6.614694 TTAAGTGGATGCTGGAACTACTAA 57.385 37.500 0.00 0.00 0.00 2.24
3618 3721 6.403878 GTTTAAGTGGATGCTGGAACTACTA 58.596 40.000 0.00 0.00 0.00 1.82
3619 3722 5.246307 GTTTAAGTGGATGCTGGAACTACT 58.754 41.667 0.00 0.00 0.00 2.57
3620 3723 4.395231 GGTTTAAGTGGATGCTGGAACTAC 59.605 45.833 0.00 0.00 0.00 2.73
3621 3724 4.042311 TGGTTTAAGTGGATGCTGGAACTA 59.958 41.667 0.00 0.00 0.00 2.24
3622 3725 3.181434 TGGTTTAAGTGGATGCTGGAACT 60.181 43.478 0.00 0.00 0.00 3.01
3623 3726 3.057526 GTGGTTTAAGTGGATGCTGGAAC 60.058 47.826 0.00 0.00 0.00 3.62
3624 3727 3.153919 GTGGTTTAAGTGGATGCTGGAA 58.846 45.455 0.00 0.00 0.00 3.53
3625 3728 2.375174 AGTGGTTTAAGTGGATGCTGGA 59.625 45.455 0.00 0.00 0.00 3.86
3626 3729 2.795329 AGTGGTTTAAGTGGATGCTGG 58.205 47.619 0.00 0.00 0.00 4.85
3627 3730 5.245531 TCTAAGTGGTTTAAGTGGATGCTG 58.754 41.667 0.00 0.00 0.00 4.41
3628 3731 5.499004 TCTAAGTGGTTTAAGTGGATGCT 57.501 39.130 0.00 0.00 0.00 3.79
3629 3732 6.349363 CCTTTCTAAGTGGTTTAAGTGGATGC 60.349 42.308 0.00 0.00 0.00 3.91
3630 3733 6.151144 CCCTTTCTAAGTGGTTTAAGTGGATG 59.849 42.308 0.00 0.00 0.00 3.51
3631 3734 6.183361 ACCCTTTCTAAGTGGTTTAAGTGGAT 60.183 38.462 0.00 0.00 30.85 3.41
3632 3735 5.133153 ACCCTTTCTAAGTGGTTTAAGTGGA 59.867 40.000 0.00 0.00 30.85 4.02
3633 3736 5.382616 ACCCTTTCTAAGTGGTTTAAGTGG 58.617 41.667 0.00 0.00 30.85 4.00
3634 3737 5.472478 GGACCCTTTCTAAGTGGTTTAAGTG 59.528 44.000 0.00 0.00 33.84 3.16
3635 3738 5.371769 AGGACCCTTTCTAAGTGGTTTAAGT 59.628 40.000 0.00 0.00 33.84 2.24
3636 3739 5.877491 AGGACCCTTTCTAAGTGGTTTAAG 58.123 41.667 0.00 0.00 33.84 1.85
3637 3740 5.917545 AGGACCCTTTCTAAGTGGTTTAA 57.082 39.130 0.00 0.00 33.84 1.52
3638 3741 5.917545 AAGGACCCTTTCTAAGTGGTTTA 57.082 39.130 0.00 0.00 33.84 2.01
3639 3742 4.808767 AAGGACCCTTTCTAAGTGGTTT 57.191 40.909 0.00 0.00 33.84 3.27
3640 3743 4.079385 ACAAAGGACCCTTTCTAAGTGGTT 60.079 41.667 10.88 0.00 43.56 3.67
3641 3744 3.462205 ACAAAGGACCCTTTCTAAGTGGT 59.538 43.478 10.88 2.49 43.56 4.16
3642 3745 4.100279 ACAAAGGACCCTTTCTAAGTGG 57.900 45.455 10.88 1.92 43.56 4.00
3643 3746 5.828328 AGAAACAAAGGACCCTTTCTAAGTG 59.172 40.000 10.88 3.18 43.56 3.16
3644 3747 6.014771 AGAAACAAAGGACCCTTTCTAAGT 57.985 37.500 10.88 4.12 43.56 2.24
3645 3748 6.773200 AGAAGAAACAAAGGACCCTTTCTAAG 59.227 38.462 10.88 3.54 43.56 2.18
3646 3749 6.669631 AGAAGAAACAAAGGACCCTTTCTAA 58.330 36.000 10.88 0.00 43.56 2.10
3647 3750 6.262056 AGAAGAAACAAAGGACCCTTTCTA 57.738 37.500 10.88 0.00 43.56 2.10
3648 3751 5.130705 AGAAGAAACAAAGGACCCTTTCT 57.869 39.130 10.88 3.37 43.56 2.52
3649 3752 6.490381 ACATAGAAGAAACAAAGGACCCTTTC 59.510 38.462 10.88 1.13 43.56 2.62
3650 3753 6.373759 ACATAGAAGAAACAAAGGACCCTTT 58.626 36.000 8.17 8.17 45.98 3.11
3651 3754 5.953571 ACATAGAAGAAACAAAGGACCCTT 58.046 37.500 0.00 0.00 37.98 3.95
3652 3755 5.584551 ACATAGAAGAAACAAAGGACCCT 57.415 39.130 0.00 0.00 0.00 4.34
3653 3756 5.564848 GCAACATAGAAGAAACAAAGGACCC 60.565 44.000 0.00 0.00 0.00 4.46
3654 3757 5.009610 TGCAACATAGAAGAAACAAAGGACC 59.990 40.000 0.00 0.00 0.00 4.46
3655 3758 6.072112 TGCAACATAGAAGAAACAAAGGAC 57.928 37.500 0.00 0.00 0.00 3.85
3656 3759 6.707440 TTGCAACATAGAAGAAACAAAGGA 57.293 33.333 0.00 0.00 0.00 3.36
3657 3760 7.147312 TGATTGCAACATAGAAGAAACAAAGG 58.853 34.615 0.00 0.00 0.00 3.11
3658 3761 8.578308 TTGATTGCAACATAGAAGAAACAAAG 57.422 30.769 0.00 0.00 0.00 2.77
3659 3762 8.816144 GTTTGATTGCAACATAGAAGAAACAAA 58.184 29.630 0.00 0.00 32.79 2.83
3660 3763 7.978414 TGTTTGATTGCAACATAGAAGAAACAA 59.022 29.630 0.00 0.00 32.79 2.83
3661 3764 7.487484 TGTTTGATTGCAACATAGAAGAAACA 58.513 30.769 0.00 5.79 32.79 2.83
3662 3765 7.928908 TGTTTGATTGCAACATAGAAGAAAC 57.071 32.000 0.00 3.33 32.79 2.78
3663 3766 7.437862 GGTTGTTTGATTGCAACATAGAAGAAA 59.562 33.333 0.00 0.00 44.70 2.52
3664 3767 6.922957 GGTTGTTTGATTGCAACATAGAAGAA 59.077 34.615 0.00 0.00 44.70 2.52
3665 3768 6.446318 GGTTGTTTGATTGCAACATAGAAGA 58.554 36.000 0.00 0.00 44.70 2.87
3666 3769 5.634859 GGGTTGTTTGATTGCAACATAGAAG 59.365 40.000 0.00 0.00 44.70 2.85
3667 3770 5.069648 TGGGTTGTTTGATTGCAACATAGAA 59.930 36.000 0.00 0.04 44.70 2.10
3668 3771 4.586421 TGGGTTGTTTGATTGCAACATAGA 59.414 37.500 0.00 0.00 44.70 1.98
3669 3772 4.880759 TGGGTTGTTTGATTGCAACATAG 58.119 39.130 0.00 0.00 44.70 2.23
3670 3773 4.944619 TGGGTTGTTTGATTGCAACATA 57.055 36.364 0.00 0.00 44.70 2.29
3671 3774 3.834489 TGGGTTGTTTGATTGCAACAT 57.166 38.095 0.00 0.00 44.70 2.71
3672 3775 3.616956 TTGGGTTGTTTGATTGCAACA 57.383 38.095 0.00 0.00 44.70 3.33
3673 3776 4.954092 TTTTGGGTTGTTTGATTGCAAC 57.046 36.364 0.00 0.00 42.86 4.17
3674 3777 4.578105 GGATTTTGGGTTGTTTGATTGCAA 59.422 37.500 0.00 0.00 0.00 4.08
3675 3778 4.133078 GGATTTTGGGTTGTTTGATTGCA 58.867 39.130 0.00 0.00 0.00 4.08
3676 3779 4.388485 AGGATTTTGGGTTGTTTGATTGC 58.612 39.130 0.00 0.00 0.00 3.56
3677 3780 7.981225 CCTATAGGATTTTGGGTTGTTTGATTG 59.019 37.037 14.11 0.00 37.39 2.67
3678 3781 7.898636 TCCTATAGGATTTTGGGTTGTTTGATT 59.101 33.333 18.00 0.00 39.78 2.57
3679 3782 7.418378 TCCTATAGGATTTTGGGTTGTTTGAT 58.582 34.615 18.00 0.00 39.78 2.57
3680 3783 6.795590 TCCTATAGGATTTTGGGTTGTTTGA 58.204 36.000 18.00 0.00 39.78 2.69
3696 3799 7.512992 AGGTCAAAACATCTCAATCCTATAGG 58.487 38.462 13.07 13.07 0.00 2.57
3697 3800 8.970859 AAGGTCAAAACATCTCAATCCTATAG 57.029 34.615 0.00 0.00 0.00 1.31
3698 3801 8.772250 AGAAGGTCAAAACATCTCAATCCTATA 58.228 33.333 0.00 0.00 0.00 1.31
3699 3802 7.637511 AGAAGGTCAAAACATCTCAATCCTAT 58.362 34.615 0.00 0.00 0.00 2.57
3700 3803 7.020827 AGAAGGTCAAAACATCTCAATCCTA 57.979 36.000 0.00 0.00 0.00 2.94
3701 3804 5.885465 AGAAGGTCAAAACATCTCAATCCT 58.115 37.500 0.00 0.00 0.00 3.24
3702 3805 7.687941 TTAGAAGGTCAAAACATCTCAATCC 57.312 36.000 0.00 0.00 0.00 3.01
3703 3806 8.401709 GGATTAGAAGGTCAAAACATCTCAATC 58.598 37.037 0.00 0.00 0.00 2.67
3704 3807 8.112183 AGGATTAGAAGGTCAAAACATCTCAAT 58.888 33.333 0.00 0.00 0.00 2.57
3705 3808 7.461749 AGGATTAGAAGGTCAAAACATCTCAA 58.538 34.615 0.00 0.00 0.00 3.02
3706 3809 7.020827 AGGATTAGAAGGTCAAAACATCTCA 57.979 36.000 0.00 0.00 0.00 3.27
3707 3810 9.050601 CATAGGATTAGAAGGTCAAAACATCTC 57.949 37.037 0.00 0.00 0.00 2.75
3708 3811 7.500559 GCATAGGATTAGAAGGTCAAAACATCT 59.499 37.037 0.00 0.00 0.00 2.90
3709 3812 7.255277 GGCATAGGATTAGAAGGTCAAAACATC 60.255 40.741 0.00 0.00 0.00 3.06
3710 3813 6.547510 GGCATAGGATTAGAAGGTCAAAACAT 59.452 38.462 0.00 0.00 0.00 2.71
3711 3814 5.885912 GGCATAGGATTAGAAGGTCAAAACA 59.114 40.000 0.00 0.00 0.00 2.83
3712 3815 6.122964 AGGCATAGGATTAGAAGGTCAAAAC 58.877 40.000 0.00 0.00 0.00 2.43
3713 3816 6.327386 AGGCATAGGATTAGAAGGTCAAAA 57.673 37.500 0.00 0.00 0.00 2.44
3714 3817 5.975988 AGGCATAGGATTAGAAGGTCAAA 57.024 39.130 0.00 0.00 0.00 2.69
3715 3818 5.975988 AAGGCATAGGATTAGAAGGTCAA 57.024 39.130 0.00 0.00 0.00 3.18
3716 3819 5.975988 AAAGGCATAGGATTAGAAGGTCA 57.024 39.130 0.00 0.00 0.00 4.02
3717 3820 6.484977 CAGAAAAGGCATAGGATTAGAAGGTC 59.515 42.308 0.00 0.00 0.00 3.85
3718 3821 6.158695 TCAGAAAAGGCATAGGATTAGAAGGT 59.841 38.462 0.00 0.00 0.00 3.50
3719 3822 6.595682 TCAGAAAAGGCATAGGATTAGAAGG 58.404 40.000 0.00 0.00 0.00 3.46
3720 3823 8.511604 TTTCAGAAAAGGCATAGGATTAGAAG 57.488 34.615 0.00 0.00 0.00 2.85
3721 3824 8.877864 TTTTCAGAAAAGGCATAGGATTAGAA 57.122 30.769 4.06 0.00 0.00 2.10
3722 3825 8.877864 TTTTTCAGAAAAGGCATAGGATTAGA 57.122 30.769 8.34 0.00 31.41 2.10
3736 3839 8.531146 AGGTCAAAACATCTCTTTTTCAGAAAA 58.469 29.630 4.06 4.06 33.86 2.29
3737 3840 8.066612 AGGTCAAAACATCTCTTTTTCAGAAA 57.933 30.769 0.00 0.00 0.00 2.52
3738 3841 7.645058 AGGTCAAAACATCTCTTTTTCAGAA 57.355 32.000 0.00 0.00 0.00 3.02
3739 3842 7.557719 AGAAGGTCAAAACATCTCTTTTTCAGA 59.442 33.333 0.00 0.00 0.00 3.27
3740 3843 7.710896 AGAAGGTCAAAACATCTCTTTTTCAG 58.289 34.615 0.00 0.00 0.00 3.02
3741 3844 7.645058 AGAAGGTCAAAACATCTCTTTTTCA 57.355 32.000 0.00 0.00 0.00 2.69
3744 3847 8.797438 GGATTAGAAGGTCAAAACATCTCTTTT 58.203 33.333 0.00 0.00 0.00 2.27
3745 3848 8.166726 AGGATTAGAAGGTCAAAACATCTCTTT 58.833 33.333 0.00 0.00 0.00 2.52
3746 3849 7.694093 AGGATTAGAAGGTCAAAACATCTCTT 58.306 34.615 0.00 0.00 0.00 2.85
3747 3850 7.264294 AGGATTAGAAGGTCAAAACATCTCT 57.736 36.000 0.00 0.00 0.00 3.10
3748 3851 9.050601 CATAGGATTAGAAGGTCAAAACATCTC 57.949 37.037 0.00 0.00 0.00 2.75
3749 3852 7.500559 GCATAGGATTAGAAGGTCAAAACATCT 59.499 37.037 0.00 0.00 0.00 2.90
3750 3853 7.255277 GGCATAGGATTAGAAGGTCAAAACATC 60.255 40.741 0.00 0.00 0.00 3.06
3751 3854 6.547510 GGCATAGGATTAGAAGGTCAAAACAT 59.452 38.462 0.00 0.00 0.00 2.71
3752 3855 5.885912 GGCATAGGATTAGAAGGTCAAAACA 59.114 40.000 0.00 0.00 0.00 2.83
3753 3856 6.122964 AGGCATAGGATTAGAAGGTCAAAAC 58.877 40.000 0.00 0.00 0.00 2.43
3754 3857 6.327386 AGGCATAGGATTAGAAGGTCAAAA 57.673 37.500 0.00 0.00 0.00 2.44
3755 3858 5.975988 AGGCATAGGATTAGAAGGTCAAA 57.024 39.130 0.00 0.00 0.00 2.69
3756 3859 5.975988 AAGGCATAGGATTAGAAGGTCAA 57.024 39.130 0.00 0.00 0.00 3.18
3757 3860 5.975988 AAAGGCATAGGATTAGAAGGTCA 57.024 39.130 0.00 0.00 0.00 4.02
3758 3861 6.596621 AGAAAAGGCATAGGATTAGAAGGTC 58.403 40.000 0.00 0.00 0.00 3.85
3759 3862 6.582929 AGAAAAGGCATAGGATTAGAAGGT 57.417 37.500 0.00 0.00 0.00 3.50
3760 3863 9.225436 GAATAGAAAAGGCATAGGATTAGAAGG 57.775 37.037 0.00 0.00 0.00 3.46
3761 3864 9.225436 GGAATAGAAAAGGCATAGGATTAGAAG 57.775 37.037 0.00 0.00 0.00 2.85
3762 3865 8.164070 GGGAATAGAAAAGGCATAGGATTAGAA 58.836 37.037 0.00 0.00 0.00 2.10
3763 3866 7.294720 TGGGAATAGAAAAGGCATAGGATTAGA 59.705 37.037 0.00 0.00 0.00 2.10
3764 3867 7.461749 TGGGAATAGAAAAGGCATAGGATTAG 58.538 38.462 0.00 0.00 0.00 1.73
3765 3868 7.401060 TGGGAATAGAAAAGGCATAGGATTA 57.599 36.000 0.00 0.00 0.00 1.75
3766 3869 6.279813 TGGGAATAGAAAAGGCATAGGATT 57.720 37.500 0.00 0.00 0.00 3.01
3767 3870 5.930209 TGGGAATAGAAAAGGCATAGGAT 57.070 39.130 0.00 0.00 0.00 3.24
3768 3871 5.193728 ACTTGGGAATAGAAAAGGCATAGGA 59.806 40.000 0.00 0.00 0.00 2.94
3769 3872 5.449553 ACTTGGGAATAGAAAAGGCATAGG 58.550 41.667 0.00 0.00 0.00 2.57
3770 3873 7.410120 AAACTTGGGAATAGAAAAGGCATAG 57.590 36.000 0.00 0.00 0.00 2.23
3771 3874 7.790782 AAAACTTGGGAATAGAAAAGGCATA 57.209 32.000 0.00 0.00 0.00 3.14
3772 3875 6.686484 AAAACTTGGGAATAGAAAAGGCAT 57.314 33.333 0.00 0.00 0.00 4.40
3773 3876 6.493189 AAAAACTTGGGAATAGAAAAGGCA 57.507 33.333 0.00 0.00 0.00 4.75
3774 3877 7.892609 TCTAAAAACTTGGGAATAGAAAAGGC 58.107 34.615 0.00 0.00 0.00 4.35
3778 3881 9.822727 AGGATTCTAAAAACTTGGGAATAGAAA 57.177 29.630 0.00 0.00 34.25 2.52
3779 3882 9.243105 CAGGATTCTAAAAACTTGGGAATAGAA 57.757 33.333 0.00 0.00 34.84 2.10
3780 3883 7.339466 GCAGGATTCTAAAAACTTGGGAATAGA 59.661 37.037 0.00 0.00 0.00 1.98
3781 3884 7.122650 TGCAGGATTCTAAAAACTTGGGAATAG 59.877 37.037 0.00 0.00 0.00 1.73
3782 3885 6.951198 TGCAGGATTCTAAAAACTTGGGAATA 59.049 34.615 0.00 0.00 0.00 1.75
3783 3886 5.779771 TGCAGGATTCTAAAAACTTGGGAAT 59.220 36.000 0.00 0.00 0.00 3.01
3784 3887 5.144100 TGCAGGATTCTAAAAACTTGGGAA 58.856 37.500 0.00 0.00 0.00 3.97
3785 3888 4.735369 TGCAGGATTCTAAAAACTTGGGA 58.265 39.130 0.00 0.00 0.00 4.37
3786 3889 5.467035 TTGCAGGATTCTAAAAACTTGGG 57.533 39.130 0.00 0.00 0.00 4.12
3787 3890 7.153985 TGATTTGCAGGATTCTAAAAACTTGG 58.846 34.615 0.00 0.00 0.00 3.61
3788 3891 8.592105 TTGATTTGCAGGATTCTAAAAACTTG 57.408 30.769 0.00 0.00 0.00 3.16
3789 3892 9.264719 CTTTGATTTGCAGGATTCTAAAAACTT 57.735 29.630 0.00 0.00 0.00 2.66
3790 3893 8.641541 TCTTTGATTTGCAGGATTCTAAAAACT 58.358 29.630 0.00 0.00 0.00 2.66
3791 3894 8.816640 TCTTTGATTTGCAGGATTCTAAAAAC 57.183 30.769 0.00 0.00 0.00 2.43
3792 3895 8.090214 CCTCTTTGATTTGCAGGATTCTAAAAA 58.910 33.333 0.00 0.00 0.00 1.94
3793 3896 7.605449 CCTCTTTGATTTGCAGGATTCTAAAA 58.395 34.615 0.00 0.00 0.00 1.52
3794 3897 6.350445 GCCTCTTTGATTTGCAGGATTCTAAA 60.350 38.462 0.00 0.00 0.00 1.85
3795 3898 5.126061 GCCTCTTTGATTTGCAGGATTCTAA 59.874 40.000 0.00 0.00 0.00 2.10
3796 3899 4.641989 GCCTCTTTGATTTGCAGGATTCTA 59.358 41.667 0.00 0.00 0.00 2.10
3797 3900 3.446516 GCCTCTTTGATTTGCAGGATTCT 59.553 43.478 0.00 0.00 0.00 2.40
3798 3901 3.429960 GGCCTCTTTGATTTGCAGGATTC 60.430 47.826 0.00 0.00 0.00 2.52
3799 3902 2.498885 GGCCTCTTTGATTTGCAGGATT 59.501 45.455 0.00 0.00 0.00 3.01
3800 3903 2.105766 GGCCTCTTTGATTTGCAGGAT 58.894 47.619 0.00 0.00 0.00 3.24
3801 3904 1.549203 GGCCTCTTTGATTTGCAGGA 58.451 50.000 0.00 0.00 0.00 3.86
3802 3905 0.533951 GGGCCTCTTTGATTTGCAGG 59.466 55.000 0.84 0.00 0.00 4.85
3803 3906 1.553706 AGGGCCTCTTTGATTTGCAG 58.446 50.000 0.00 0.00 0.00 4.41
3804 3907 1.619827 CAAGGGCCTCTTTGATTTGCA 59.380 47.619 6.46 0.00 32.41 4.08
3805 3908 1.673923 GCAAGGGCCTCTTTGATTTGC 60.674 52.381 6.46 6.68 32.41 3.68
3806 3909 1.619827 TGCAAGGGCCTCTTTGATTTG 59.380 47.619 6.46 0.00 40.13 2.32
3807 3910 2.014010 TGCAAGGGCCTCTTTGATTT 57.986 45.000 6.46 0.00 40.13 2.17
3808 3911 2.014010 TTGCAAGGGCCTCTTTGATT 57.986 45.000 6.46 0.00 40.13 2.57
3809 3912 2.105766 GATTGCAAGGGCCTCTTTGAT 58.894 47.619 6.46 0.00 40.13 2.57
3810 3913 1.549203 GATTGCAAGGGCCTCTTTGA 58.451 50.000 6.46 0.00 40.13 2.69
3811 3914 0.171903 CGATTGCAAGGGCCTCTTTG 59.828 55.000 6.46 2.11 40.13 2.77
3812 3915 1.598701 GCGATTGCAAGGGCCTCTTT 61.599 55.000 6.46 0.00 42.15 2.52
3813 3916 2.048603 GCGATTGCAAGGGCCTCTT 61.049 57.895 6.46 0.93 42.15 2.85
3814 3917 2.439156 GCGATTGCAAGGGCCTCT 60.439 61.111 6.46 0.00 42.15 3.69
3824 3927 2.276472 TGCCTTTAACATGCGATTGC 57.724 45.000 0.00 0.00 43.20 3.56
3825 3928 3.836949 AGTTGCCTTTAACATGCGATTG 58.163 40.909 0.00 0.00 33.02 2.67
3826 3929 3.426159 CGAGTTGCCTTTAACATGCGATT 60.426 43.478 0.00 0.00 33.02 3.34
3827 3930 2.095853 CGAGTTGCCTTTAACATGCGAT 59.904 45.455 0.00 0.00 33.02 4.58
3828 3931 1.463056 CGAGTTGCCTTTAACATGCGA 59.537 47.619 0.00 0.00 33.02 5.10
3829 3932 1.463056 TCGAGTTGCCTTTAACATGCG 59.537 47.619 0.00 0.00 33.02 4.73
3830 3933 3.552604 TTCGAGTTGCCTTTAACATGC 57.447 42.857 0.00 0.00 33.02 4.06
3831 3934 5.343058 CACATTTCGAGTTGCCTTTAACATG 59.657 40.000 0.00 0.00 33.02 3.21
3832 3935 5.460646 CACATTTCGAGTTGCCTTTAACAT 58.539 37.500 0.00 0.00 33.02 2.71
3833 3936 4.261405 CCACATTTCGAGTTGCCTTTAACA 60.261 41.667 0.00 0.00 33.02 2.41
3834 3937 4.226761 CCACATTTCGAGTTGCCTTTAAC 58.773 43.478 0.00 0.00 0.00 2.01
3835 3938 3.254657 CCCACATTTCGAGTTGCCTTTAA 59.745 43.478 0.00 0.00 0.00 1.52
3836 3939 2.817258 CCCACATTTCGAGTTGCCTTTA 59.183 45.455 0.00 0.00 0.00 1.85
3837 3940 1.613437 CCCACATTTCGAGTTGCCTTT 59.387 47.619 0.00 0.00 0.00 3.11
3838 3941 1.247567 CCCACATTTCGAGTTGCCTT 58.752 50.000 0.00 0.00 0.00 4.35
3839 3942 0.110486 ACCCACATTTCGAGTTGCCT 59.890 50.000 0.00 0.00 0.00 4.75
3840 3943 0.521735 GACCCACATTTCGAGTTGCC 59.478 55.000 0.00 0.00 0.00 4.52
3841 3944 1.069227 GTGACCCACATTTCGAGTTGC 60.069 52.381 0.00 0.00 34.08 4.17
3842 3945 1.535462 GGTGACCCACATTTCGAGTTG 59.465 52.381 0.00 0.00 35.86 3.16
3843 3946 1.142060 TGGTGACCCACATTTCGAGTT 59.858 47.619 0.00 0.00 35.17 3.01
3844 3947 0.762418 TGGTGACCCACATTTCGAGT 59.238 50.000 0.00 0.00 35.17 4.18
3845 3948 1.890876 TTGGTGACCCACATTTCGAG 58.109 50.000 0.00 0.00 41.67 4.04
3846 3949 2.350057 TTTGGTGACCCACATTTCGA 57.650 45.000 0.00 0.00 41.67 3.71
3847 3950 3.316283 CATTTTGGTGACCCACATTTCG 58.684 45.455 0.00 0.00 41.67 3.46
3848 3951 3.323403 TCCATTTTGGTGACCCACATTTC 59.677 43.478 0.00 0.00 41.67 2.17
3849 3952 3.312890 TCCATTTTGGTGACCCACATTT 58.687 40.909 0.00 0.00 41.67 2.32
3850 3953 2.969628 TCCATTTTGGTGACCCACATT 58.030 42.857 0.00 0.00 41.67 2.71
3851 3954 2.632512 GTTCCATTTTGGTGACCCACAT 59.367 45.455 0.00 0.00 41.67 3.21
3852 3955 2.035632 GTTCCATTTTGGTGACCCACA 58.964 47.619 0.00 0.00 41.67 4.17
3853 3956 2.316108 AGTTCCATTTTGGTGACCCAC 58.684 47.619 0.00 0.00 41.67 4.61
3854 3957 2.765689 AGTTCCATTTTGGTGACCCA 57.234 45.000 0.00 0.00 39.03 4.51
3855 3958 3.230976 AGAAGTTCCATTTTGGTGACCC 58.769 45.455 0.00 0.00 39.03 4.46
3856 3959 4.937201 AAGAAGTTCCATTTTGGTGACC 57.063 40.909 0.00 0.00 39.03 4.02
3857 3960 7.926018 ACATTTAAGAAGTTCCATTTTGGTGAC 59.074 33.333 0.00 0.00 39.03 3.67
3858 3961 8.017418 ACATTTAAGAAGTTCCATTTTGGTGA 57.983 30.769 0.00 0.00 39.03 4.02
3859 3962 8.143835 AGACATTTAAGAAGTTCCATTTTGGTG 58.856 33.333 0.00 0.00 39.03 4.17
3860 3963 8.143835 CAGACATTTAAGAAGTTCCATTTTGGT 58.856 33.333 0.00 0.00 39.03 3.67
3861 3964 8.143835 ACAGACATTTAAGAAGTTCCATTTTGG 58.856 33.333 0.00 0.00 39.43 3.28
3862 3965 8.971321 CACAGACATTTAAGAAGTTCCATTTTG 58.029 33.333 0.00 0.00 0.00 2.44
3863 3966 8.143835 CCACAGACATTTAAGAAGTTCCATTTT 58.856 33.333 0.00 0.00 0.00 1.82
3864 3967 7.255942 CCCACAGACATTTAAGAAGTTCCATTT 60.256 37.037 0.00 0.00 0.00 2.32
3865 3968 6.209391 CCCACAGACATTTAAGAAGTTCCATT 59.791 38.462 0.00 0.00 0.00 3.16
3866 3969 5.711976 CCCACAGACATTTAAGAAGTTCCAT 59.288 40.000 0.00 0.00 0.00 3.41
3867 3970 5.070001 CCCACAGACATTTAAGAAGTTCCA 58.930 41.667 0.00 0.00 0.00 3.53
3868 3971 4.459337 CCCCACAGACATTTAAGAAGTTCC 59.541 45.833 0.00 0.00 0.00 3.62
3869 3972 5.313712 TCCCCACAGACATTTAAGAAGTTC 58.686 41.667 0.00 0.00 0.00 3.01
3870 3973 5.319043 TCCCCACAGACATTTAAGAAGTT 57.681 39.130 0.00 0.00 0.00 2.66
3871 3974 4.993705 TCCCCACAGACATTTAAGAAGT 57.006 40.909 0.00 0.00 0.00 3.01
3872 3975 6.058183 CCTATCCCCACAGACATTTAAGAAG 58.942 44.000 0.00 0.00 0.00 2.85
3873 3976 5.104109 CCCTATCCCCACAGACATTTAAGAA 60.104 44.000 0.00 0.00 0.00 2.52
3874 3977 4.412199 CCCTATCCCCACAGACATTTAAGA 59.588 45.833 0.00 0.00 0.00 2.10
3875 3978 4.166144 ACCCTATCCCCACAGACATTTAAG 59.834 45.833 0.00 0.00 0.00 1.85
3876 3979 4.080015 CACCCTATCCCCACAGACATTTAA 60.080 45.833 0.00 0.00 0.00 1.52
3877 3980 3.458118 CACCCTATCCCCACAGACATTTA 59.542 47.826 0.00 0.00 0.00 1.40
3878 3981 2.242196 CACCCTATCCCCACAGACATTT 59.758 50.000 0.00 0.00 0.00 2.32
3879 3982 1.846439 CACCCTATCCCCACAGACATT 59.154 52.381 0.00 0.00 0.00 2.71
3880 3983 1.511613 CACCCTATCCCCACAGACAT 58.488 55.000 0.00 0.00 0.00 3.06
3881 3984 0.620410 CCACCCTATCCCCACAGACA 60.620 60.000 0.00 0.00 0.00 3.41
3882 3985 0.326238 TCCACCCTATCCCCACAGAC 60.326 60.000 0.00 0.00 0.00 3.51
3883 3986 0.031111 CTCCACCCTATCCCCACAGA 60.031 60.000 0.00 0.00 0.00 3.41
3884 3987 1.056700 CCTCCACCCTATCCCCACAG 61.057 65.000 0.00 0.00 0.00 3.66
3885 3988 1.004230 CCTCCACCCTATCCCCACA 59.996 63.158 0.00 0.00 0.00 4.17
3886 3989 2.452937 GCCTCCACCCTATCCCCAC 61.453 68.421 0.00 0.00 0.00 4.61
3887 3990 2.039831 GCCTCCACCCTATCCCCA 60.040 66.667 0.00 0.00 0.00 4.96
3888 3991 1.068352 ATTGCCTCCACCCTATCCCC 61.068 60.000 0.00 0.00 0.00 4.81
3889 3992 0.402121 GATTGCCTCCACCCTATCCC 59.598 60.000 0.00 0.00 0.00 3.85
3890 3993 0.402121 GGATTGCCTCCACCCTATCC 59.598 60.000 0.00 0.00 44.26 2.59
3891 3994 0.035458 CGGATTGCCTCCACCCTATC 59.965 60.000 3.58 0.00 45.24 2.08
3892 3995 0.399949 TCGGATTGCCTCCACCCTAT 60.400 55.000 3.58 0.00 45.24 2.57
3893 3996 1.002403 TCGGATTGCCTCCACCCTA 59.998 57.895 3.58 0.00 45.24 3.53
3894 3997 2.285368 TCGGATTGCCTCCACCCT 60.285 61.111 3.58 0.00 45.24 4.34
3895 3998 2.124695 GTCGGATTGCCTCCACCC 60.125 66.667 3.58 0.00 45.24 4.61
3896 3999 2.511600 CGTCGGATTGCCTCCACC 60.512 66.667 3.58 0.00 45.24 4.61
3897 4000 1.810030 GTCGTCGGATTGCCTCCAC 60.810 63.158 3.58 0.80 45.24 4.02
3898 4001 2.577059 GTCGTCGGATTGCCTCCA 59.423 61.111 3.58 0.00 45.24 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.