Multiple sequence alignment - TraesCS2A01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G185100 chr2A 100.000 2453 0 0 1 2453 146075711 146078163 0.000000e+00 4530.0
1 TraesCS2A01G185100 chr2A 94.915 59 3 0 353 411 447009273 447009215 2.600000e-15 93.5
2 TraesCS2A01G185100 chr5D 87.066 835 93 10 723 1544 59886711 59887543 0.000000e+00 929.0
3 TraesCS2A01G185100 chr5D 88.000 775 77 4 1084 1842 368951165 368950391 0.000000e+00 902.0
4 TraesCS2A01G185100 chr5D 85.731 834 95 12 724 1544 357018994 357018172 0.000000e+00 859.0
5 TraesCS2A01G185100 chr5D 86.070 603 63 10 723 1312 549027245 549027839 1.600000e-176 628.0
6 TraesCS2A01G185100 chr5D 96.620 355 11 1 3 356 87147299 87147653 2.720000e-164 588.0
7 TraesCS2A01G185100 chr5D 94.915 59 3 0 353 411 376449608 376449550 2.600000e-15 93.5
8 TraesCS2A01G185100 chr5D 91.045 67 5 1 353 418 499648351 499648417 3.360000e-14 89.8
9 TraesCS2A01G185100 chr2B 94.343 601 28 3 1856 2453 211877260 211876663 0.000000e+00 917.0
10 TraesCS2A01G185100 chr2B 92.208 154 9 2 416 568 211884030 211883879 5.310000e-52 215.0
11 TraesCS2A01G185100 chr2B 94.915 59 3 0 353 411 211884619 211884561 2.600000e-15 93.5
12 TraesCS2A01G185100 chr2B 93.333 60 3 1 353 411 555788057 555788116 1.210000e-13 87.9
13 TraesCS2A01G185100 chr3D 86.380 837 95 9 723 1544 19031464 19032296 0.000000e+00 896.0
14 TraesCS2A01G185100 chr2D 93.966 580 23 4 1846 2425 154633587 154633020 0.000000e+00 867.0
15 TraesCS2A01G185100 chr2D 85.927 604 62 13 720 1309 162257765 162258359 7.450000e-175 623.0
16 TraesCS2A01G185100 chr2D 92.903 155 7 3 416 568 154633860 154633708 3.170000e-54 222.0
17 TraesCS2A01G185100 chr7D 86.250 800 91 10 754 1540 18833663 18832870 0.000000e+00 850.0
18 TraesCS2A01G185100 chr7D 85.524 601 64 12 723 1309 184508657 184509248 7.500000e-170 606.0
19 TraesCS2A01G185100 chr7D 96.389 360 13 0 3 362 509932752 509932393 5.840000e-166 593.0
20 TraesCS2A01G185100 chr7D 86.521 549 59 10 723 1258 135415873 135415327 7.550000e-165 590.0
21 TraesCS2A01G185100 chr7D 96.620 355 11 1 1 354 508788648 508788294 2.720000e-164 588.0
22 TraesCS2A01G185100 chr7D 85.761 309 33 6 1538 1841 18832731 18832429 1.420000e-82 316.0
23 TraesCS2A01G185100 chr7D 81.132 265 47 3 1581 1842 635442844 635443108 2.470000e-50 209.0
24 TraesCS2A01G185100 chr7D 85.897 156 21 1 1688 1842 126704891 126705046 5.430000e-37 165.0
25 TraesCS2A01G185100 chr7D 75.472 159 33 6 2206 2361 50153439 50153594 3.380000e-09 73.1
26 TraesCS2A01G185100 chr1A 85.389 835 97 13 723 1544 6199775 6200597 0.000000e+00 843.0
27 TraesCS2A01G185100 chr3B 85.287 836 98 10 721 1544 646248529 646249351 0.000000e+00 839.0
28 TraesCS2A01G185100 chr3B 94.915 59 3 0 353 411 175642953 175642895 2.600000e-15 93.5
29 TraesCS2A01G185100 chr7B 85.084 838 105 13 723 1544 115231455 115232288 0.000000e+00 837.0
30 TraesCS2A01G185100 chr1D 86.020 608 63 11 722 1315 246942811 246942212 1.240000e-177 632.0
31 TraesCS2A01G185100 chr5A 97.183 355 9 1 1 354 28327298 28327652 1.260000e-167 599.0
32 TraesCS2A01G185100 chr5A 88.024 167 19 1 1677 1842 287619890 287620056 1.920000e-46 196.0
33 TraesCS2A01G185100 chr4D 96.884 353 10 1 3 354 29074131 29073779 7.550000e-165 590.0
34 TraesCS2A01G185100 chr4D 96.122 361 12 2 1 359 54995366 54995006 2.720000e-164 588.0
35 TraesCS2A01G185100 chr4D 96.610 354 11 1 1 353 211997563 211997210 9.770000e-164 586.0
36 TraesCS2A01G185100 chr4D 96.610 354 11 1 3 355 260771685 260772038 9.770000e-164 586.0
37 TraesCS2A01G185100 chr4D 96.100 359 12 2 3 360 442456947 442457304 3.510000e-163 584.0
38 TraesCS2A01G185100 chr4D 94.737 57 3 0 355 411 437171144 437171200 3.360000e-14 89.8
39 TraesCS2A01G185100 chr5B 85.507 552 61 9 723 1256 421721845 421721295 2.130000e-155 558.0
40 TraesCS2A01G185100 chr5B 85.045 448 55 6 1109 1544 271262220 271262667 1.730000e-121 446.0
41 TraesCS2A01G185100 chr5B 85.256 312 33 8 1538 1844 421719008 421718705 2.370000e-80 309.0
42 TraesCS2A01G185100 chr5B 86.063 287 39 1 1261 1547 421719425 421719140 8.520000e-80 307.0
43 TraesCS2A01G185100 chr6A 84.971 346 45 6 1086 1428 27497177 27497518 6.490000e-91 344.0
44 TraesCS2A01G185100 chr7A 81.780 236 37 5 1611 1842 488041711 488041944 2.490000e-45 193.0
45 TraesCS2A01G185100 chr7A 77.395 261 52 5 1586 1843 733267523 733267779 5.470000e-32 148.0
46 TraesCS2A01G185100 chr7A 93.333 60 3 1 354 412 582385418 582385477 1.210000e-13 87.9
47 TraesCS2A01G185100 chr6D 83.246 191 30 2 1662 1850 412445386 412445576 9.020000e-40 174.0
48 TraesCS2A01G185100 chr3A 92.537 67 4 1 353 418 465207673 465207739 7.220000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G185100 chr2A 146075711 146078163 2452 False 4530.000000 4530 100.000000 1 2453 1 chr2A.!!$F1 2452
1 TraesCS2A01G185100 chr5D 59886711 59887543 832 False 929.000000 929 87.066000 723 1544 1 chr5D.!!$F1 821
2 TraesCS2A01G185100 chr5D 368950391 368951165 774 True 902.000000 902 88.000000 1084 1842 1 chr5D.!!$R2 758
3 TraesCS2A01G185100 chr5D 357018172 357018994 822 True 859.000000 859 85.731000 724 1544 1 chr5D.!!$R1 820
4 TraesCS2A01G185100 chr5D 549027245 549027839 594 False 628.000000 628 86.070000 723 1312 1 chr5D.!!$F4 589
5 TraesCS2A01G185100 chr2B 211876663 211877260 597 True 917.000000 917 94.343000 1856 2453 1 chr2B.!!$R1 597
6 TraesCS2A01G185100 chr3D 19031464 19032296 832 False 896.000000 896 86.380000 723 1544 1 chr3D.!!$F1 821
7 TraesCS2A01G185100 chr2D 162257765 162258359 594 False 623.000000 623 85.927000 720 1309 1 chr2D.!!$F1 589
8 TraesCS2A01G185100 chr2D 154633020 154633860 840 True 544.500000 867 93.434500 416 2425 2 chr2D.!!$R1 2009
9 TraesCS2A01G185100 chr7D 184508657 184509248 591 False 606.000000 606 85.524000 723 1309 1 chr7D.!!$F3 586
10 TraesCS2A01G185100 chr7D 135415327 135415873 546 True 590.000000 590 86.521000 723 1258 1 chr7D.!!$R1 535
11 TraesCS2A01G185100 chr7D 18832429 18833663 1234 True 583.000000 850 86.005500 754 1841 2 chr7D.!!$R4 1087
12 TraesCS2A01G185100 chr1A 6199775 6200597 822 False 843.000000 843 85.389000 723 1544 1 chr1A.!!$F1 821
13 TraesCS2A01G185100 chr3B 646248529 646249351 822 False 839.000000 839 85.287000 721 1544 1 chr3B.!!$F1 823
14 TraesCS2A01G185100 chr7B 115231455 115232288 833 False 837.000000 837 85.084000 723 1544 1 chr7B.!!$F1 821
15 TraesCS2A01G185100 chr1D 246942212 246942811 599 True 632.000000 632 86.020000 722 1315 1 chr1D.!!$R1 593
16 TraesCS2A01G185100 chr5B 421718705 421721845 3140 True 391.333333 558 85.608667 723 1844 3 chr5B.!!$R1 1121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.102481 CGCCGAACTAGTGCACCTAT 59.898 55.0 14.63 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 4108 0.31904 CATGCCTACGGTGGATCGAG 60.319 60.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.988708 AAGCATTGCAATACCGTTTTTG 57.011 36.364 12.53 0.00 0.00 2.44
24 25 3.988819 AGCATTGCAATACCGTTTTTGT 58.011 36.364 12.53 0.00 0.00 2.83
25 26 3.740321 AGCATTGCAATACCGTTTTTGTG 59.260 39.130 12.53 0.00 0.00 3.33
26 27 3.664014 GCATTGCAATACCGTTTTTGTGC 60.664 43.478 12.53 4.49 0.00 4.57
27 28 2.141535 TGCAATACCGTTTTTGTGCC 57.858 45.000 0.00 0.00 0.00 5.01
28 29 1.269831 TGCAATACCGTTTTTGTGCCC 60.270 47.619 0.00 0.00 0.00 5.36
29 30 1.692296 CAATACCGTTTTTGTGCCCG 58.308 50.000 0.00 0.00 0.00 6.13
30 31 1.001158 CAATACCGTTTTTGTGCCCGT 60.001 47.619 0.00 0.00 0.00 5.28
31 32 1.320507 ATACCGTTTTTGTGCCCGTT 58.679 45.000 0.00 0.00 0.00 4.44
32 33 1.101331 TACCGTTTTTGTGCCCGTTT 58.899 45.000 0.00 0.00 0.00 3.60
33 34 1.101331 ACCGTTTTTGTGCCCGTTTA 58.899 45.000 0.00 0.00 0.00 2.01
34 35 1.202279 ACCGTTTTTGTGCCCGTTTAC 60.202 47.619 0.00 0.00 0.00 2.01
35 36 1.065851 CCGTTTTTGTGCCCGTTTACT 59.934 47.619 0.00 0.00 0.00 2.24
36 37 2.290093 CCGTTTTTGTGCCCGTTTACTA 59.710 45.455 0.00 0.00 0.00 1.82
37 38 3.058085 CCGTTTTTGTGCCCGTTTACTAT 60.058 43.478 0.00 0.00 0.00 2.12
38 39 4.538917 CGTTTTTGTGCCCGTTTACTATT 58.461 39.130 0.00 0.00 0.00 1.73
39 40 4.977347 CGTTTTTGTGCCCGTTTACTATTT 59.023 37.500 0.00 0.00 0.00 1.40
40 41 5.108179 CGTTTTTGTGCCCGTTTACTATTTG 60.108 40.000 0.00 0.00 0.00 2.32
41 42 3.562567 TTGTGCCCGTTTACTATTTGC 57.437 42.857 0.00 0.00 0.00 3.68
42 43 2.785562 TGTGCCCGTTTACTATTTGCT 58.214 42.857 0.00 0.00 0.00 3.91
43 44 3.940319 TGTGCCCGTTTACTATTTGCTA 58.060 40.909 0.00 0.00 0.00 3.49
44 45 3.685756 TGTGCCCGTTTACTATTTGCTAC 59.314 43.478 0.00 0.00 0.00 3.58
45 46 3.064408 GTGCCCGTTTACTATTTGCTACC 59.936 47.826 0.00 0.00 0.00 3.18
46 47 3.054948 TGCCCGTTTACTATTTGCTACCT 60.055 43.478 0.00 0.00 0.00 3.08
47 48 3.943381 GCCCGTTTACTATTTGCTACCTT 59.057 43.478 0.00 0.00 0.00 3.50
48 49 4.201881 GCCCGTTTACTATTTGCTACCTTG 60.202 45.833 0.00 0.00 0.00 3.61
49 50 4.201881 CCCGTTTACTATTTGCTACCTTGC 60.202 45.833 0.00 0.00 0.00 4.01
50 51 4.634443 CCGTTTACTATTTGCTACCTTGCT 59.366 41.667 0.00 0.00 0.00 3.91
51 52 5.447279 CCGTTTACTATTTGCTACCTTGCTG 60.447 44.000 0.00 0.00 0.00 4.41
52 53 5.121768 CGTTTACTATTTGCTACCTTGCTGT 59.878 40.000 0.00 0.00 0.00 4.40
53 54 6.348213 CGTTTACTATTTGCTACCTTGCTGTT 60.348 38.462 0.00 0.00 0.00 3.16
54 55 7.368059 GTTTACTATTTGCTACCTTGCTGTTT 58.632 34.615 0.00 0.00 0.00 2.83
55 56 7.519032 TTACTATTTGCTACCTTGCTGTTTT 57.481 32.000 0.00 0.00 0.00 2.43
56 57 6.405278 ACTATTTGCTACCTTGCTGTTTTT 57.595 33.333 0.00 0.00 0.00 1.94
57 58 7.519032 ACTATTTGCTACCTTGCTGTTTTTA 57.481 32.000 0.00 0.00 0.00 1.52
58 59 8.122472 ACTATTTGCTACCTTGCTGTTTTTAT 57.878 30.769 0.00 0.00 0.00 1.40
59 60 8.585018 ACTATTTGCTACCTTGCTGTTTTTATT 58.415 29.630 0.00 0.00 0.00 1.40
60 61 9.423061 CTATTTGCTACCTTGCTGTTTTTATTT 57.577 29.630 0.00 0.00 0.00 1.40
62 63 9.942850 ATTTGCTACCTTGCTGTTTTTATTTAT 57.057 25.926 0.00 0.00 0.00 1.40
63 64 9.771534 TTTGCTACCTTGCTGTTTTTATTTATT 57.228 25.926 0.00 0.00 0.00 1.40
64 65 9.771534 TTGCTACCTTGCTGTTTTTATTTATTT 57.228 25.926 0.00 0.00 0.00 1.40
121 122 6.595772 ACACTTTTATCATCATCTCTTCGC 57.404 37.500 0.00 0.00 0.00 4.70
122 123 5.525378 ACACTTTTATCATCATCTCTTCGCC 59.475 40.000 0.00 0.00 0.00 5.54
123 124 4.747108 ACTTTTATCATCATCTCTTCGCCG 59.253 41.667 0.00 0.00 0.00 6.46
124 125 4.584327 TTTATCATCATCTCTTCGCCGA 57.416 40.909 0.00 0.00 0.00 5.54
125 126 4.584327 TTATCATCATCTCTTCGCCGAA 57.416 40.909 0.00 0.00 0.00 4.30
126 127 2.209838 TCATCATCTCTTCGCCGAAC 57.790 50.000 0.00 0.00 0.00 3.95
127 128 1.751351 TCATCATCTCTTCGCCGAACT 59.249 47.619 0.00 0.00 0.00 3.01
128 129 2.949644 TCATCATCTCTTCGCCGAACTA 59.050 45.455 0.00 0.00 0.00 2.24
129 130 3.003793 TCATCATCTCTTCGCCGAACTAG 59.996 47.826 0.00 0.00 0.00 2.57
130 131 2.366533 TCATCTCTTCGCCGAACTAGT 58.633 47.619 0.00 0.00 0.00 2.57
131 132 2.097629 TCATCTCTTCGCCGAACTAGTG 59.902 50.000 0.00 0.00 0.00 2.74
132 133 0.170561 TCTCTTCGCCGAACTAGTGC 59.829 55.000 0.00 0.00 0.00 4.40
133 134 0.109272 CTCTTCGCCGAACTAGTGCA 60.109 55.000 0.74 0.00 0.00 4.57
134 135 0.388134 TCTTCGCCGAACTAGTGCAC 60.388 55.000 9.40 9.40 0.00 4.57
135 136 1.352156 CTTCGCCGAACTAGTGCACC 61.352 60.000 14.63 0.00 0.00 5.01
136 137 1.812686 TTCGCCGAACTAGTGCACCT 61.813 55.000 14.63 3.48 0.00 4.00
137 138 0.961857 TCGCCGAACTAGTGCACCTA 60.962 55.000 14.63 4.57 0.00 3.08
138 139 0.102481 CGCCGAACTAGTGCACCTAT 59.898 55.000 14.63 0.00 0.00 2.57
139 140 1.335810 CGCCGAACTAGTGCACCTATA 59.664 52.381 14.63 0.00 0.00 1.31
140 141 2.740452 GCCGAACTAGTGCACCTATAC 58.260 52.381 14.63 2.01 0.00 1.47
141 142 2.100252 GCCGAACTAGTGCACCTATACA 59.900 50.000 14.63 0.00 0.00 2.29
142 143 3.429822 GCCGAACTAGTGCACCTATACAA 60.430 47.826 14.63 0.00 0.00 2.41
143 144 4.739735 GCCGAACTAGTGCACCTATACAAT 60.740 45.833 14.63 0.00 0.00 2.71
144 145 5.357257 CCGAACTAGTGCACCTATACAATT 58.643 41.667 14.63 0.00 0.00 2.32
145 146 5.815740 CCGAACTAGTGCACCTATACAATTT 59.184 40.000 14.63 0.00 0.00 1.82
146 147 6.315393 CCGAACTAGTGCACCTATACAATTTT 59.685 38.462 14.63 0.00 0.00 1.82
147 148 7.399523 CGAACTAGTGCACCTATACAATTTTC 58.600 38.462 14.63 1.64 0.00 2.29
148 149 7.465513 CGAACTAGTGCACCTATACAATTTTCC 60.466 40.741 14.63 0.00 0.00 3.13
149 150 6.717289 ACTAGTGCACCTATACAATTTTCCA 58.283 36.000 14.63 0.00 0.00 3.53
150 151 7.346471 ACTAGTGCACCTATACAATTTTCCAT 58.654 34.615 14.63 0.00 0.00 3.41
151 152 7.834181 ACTAGTGCACCTATACAATTTTCCATT 59.166 33.333 14.63 0.00 0.00 3.16
152 153 9.337396 CTAGTGCACCTATACAATTTTCCATTA 57.663 33.333 14.63 0.00 0.00 1.90
153 154 8.766994 AGTGCACCTATACAATTTTCCATTAT 57.233 30.769 14.63 0.00 0.00 1.28
154 155 9.860650 AGTGCACCTATACAATTTTCCATTATA 57.139 29.630 14.63 0.00 0.00 0.98
164 165 8.144862 ACAATTTTCCATTATATTGGGTGTGT 57.855 30.769 12.61 8.05 37.37 3.72
165 166 8.601546 ACAATTTTCCATTATATTGGGTGTGTT 58.398 29.630 12.61 1.81 37.37 3.32
166 167 8.881743 CAATTTTCCATTATATTGGGTGTGTTG 58.118 33.333 12.61 8.60 37.37 3.33
167 168 6.537453 TTTCCATTATATTGGGTGTGTTGG 57.463 37.500 12.61 0.00 37.37 3.77
168 169 4.541705 TCCATTATATTGGGTGTGTTGGG 58.458 43.478 12.61 0.00 37.37 4.12
169 170 3.640967 CCATTATATTGGGTGTGTTGGGG 59.359 47.826 5.85 0.00 32.80 4.96
170 171 4.541705 CATTATATTGGGTGTGTTGGGGA 58.458 43.478 0.00 0.00 0.00 4.81
171 172 2.525105 ATATTGGGTGTGTTGGGGAC 57.475 50.000 0.00 0.00 0.00 4.46
172 173 1.149986 TATTGGGTGTGTTGGGGACA 58.850 50.000 0.00 0.00 39.83 4.02
182 183 3.593442 TGTTGGGGACACAAGAGATTT 57.407 42.857 0.00 0.00 42.67 2.17
183 184 3.486383 TGTTGGGGACACAAGAGATTTC 58.514 45.455 0.00 0.00 42.67 2.17
184 185 3.138283 TGTTGGGGACACAAGAGATTTCT 59.862 43.478 0.00 0.00 42.67 2.52
185 186 4.145052 GTTGGGGACACAAGAGATTTCTT 58.855 43.478 0.00 0.00 42.67 2.52
197 198 4.563061 AGAGATTTCTTGCATTTGGTTGC 58.437 39.130 0.00 0.00 43.07 4.17
203 204 4.994744 GCATTTGGTTGCAGGGTC 57.005 55.556 0.00 0.00 42.31 4.46
204 205 2.048601 GCATTTGGTTGCAGGGTCA 58.951 52.632 0.00 0.00 42.31 4.02
205 206 0.609662 GCATTTGGTTGCAGGGTCAT 59.390 50.000 0.00 0.00 42.31 3.06
206 207 1.002315 GCATTTGGTTGCAGGGTCATT 59.998 47.619 0.00 0.00 42.31 2.57
207 208 2.550639 GCATTTGGTTGCAGGGTCATTT 60.551 45.455 0.00 0.00 42.31 2.32
208 209 2.906691 TTTGGTTGCAGGGTCATTTG 57.093 45.000 0.00 0.00 0.00 2.32
209 210 2.079170 TTGGTTGCAGGGTCATTTGA 57.921 45.000 0.00 0.00 0.00 2.69
210 211 1.619654 TGGTTGCAGGGTCATTTGAG 58.380 50.000 0.00 0.00 0.00 3.02
211 212 1.144708 TGGTTGCAGGGTCATTTGAGA 59.855 47.619 0.00 0.00 0.00 3.27
212 213 1.815003 GGTTGCAGGGTCATTTGAGAG 59.185 52.381 0.00 0.00 0.00 3.20
213 214 2.553028 GGTTGCAGGGTCATTTGAGAGA 60.553 50.000 0.00 0.00 0.00 3.10
214 215 2.746362 GTTGCAGGGTCATTTGAGAGAG 59.254 50.000 0.00 0.00 0.00 3.20
215 216 2.259917 TGCAGGGTCATTTGAGAGAGA 58.740 47.619 0.00 0.00 0.00 3.10
216 217 2.027745 TGCAGGGTCATTTGAGAGAGAC 60.028 50.000 0.00 0.00 0.00 3.36
224 225 5.728471 GTCATTTGAGAGAGACCATCTTCA 58.272 41.667 0.00 0.00 38.84 3.02
225 226 6.347696 GTCATTTGAGAGAGACCATCTTCAT 58.652 40.000 0.00 0.00 38.84 2.57
226 227 6.479660 GTCATTTGAGAGAGACCATCTTCATC 59.520 42.308 0.00 0.00 38.84 2.92
227 228 5.350504 TTTGAGAGAGACCATCTTCATCC 57.649 43.478 0.00 0.00 38.84 3.51
228 229 4.262891 TGAGAGAGACCATCTTCATCCT 57.737 45.455 0.00 0.00 38.84 3.24
229 230 5.394562 TGAGAGAGACCATCTTCATCCTA 57.605 43.478 0.00 0.00 38.84 2.94
230 231 5.136828 TGAGAGAGACCATCTTCATCCTAC 58.863 45.833 0.00 0.00 38.84 3.18
231 232 5.136068 AGAGAGACCATCTTCATCCTACA 57.864 43.478 0.00 0.00 38.84 2.74
232 233 5.714863 AGAGAGACCATCTTCATCCTACAT 58.285 41.667 0.00 0.00 38.84 2.29
233 234 5.774690 AGAGAGACCATCTTCATCCTACATC 59.225 44.000 0.00 0.00 38.84 3.06
234 235 5.714863 AGAGACCATCTTCATCCTACATCT 58.285 41.667 0.00 0.00 32.99 2.90
235 236 5.774690 AGAGACCATCTTCATCCTACATCTC 59.225 44.000 0.00 0.00 32.99 2.75
236 237 5.714863 AGACCATCTTCATCCTACATCTCT 58.285 41.667 0.00 0.00 0.00 3.10
237 238 5.774690 AGACCATCTTCATCCTACATCTCTC 59.225 44.000 0.00 0.00 0.00 3.20
238 239 5.462240 ACCATCTTCATCCTACATCTCTCA 58.538 41.667 0.00 0.00 0.00 3.27
239 240 5.304101 ACCATCTTCATCCTACATCTCTCAC 59.696 44.000 0.00 0.00 0.00 3.51
240 241 5.459768 CATCTTCATCCTACATCTCTCACG 58.540 45.833 0.00 0.00 0.00 4.35
241 242 3.885901 TCTTCATCCTACATCTCTCACGG 59.114 47.826 0.00 0.00 0.00 4.94
242 243 3.577805 TCATCCTACATCTCTCACGGA 57.422 47.619 0.00 0.00 0.00 4.69
243 244 4.105754 TCATCCTACATCTCTCACGGAT 57.894 45.455 0.00 0.00 0.00 4.18
244 245 4.474394 TCATCCTACATCTCTCACGGATT 58.526 43.478 0.00 0.00 0.00 3.01
245 246 4.279420 TCATCCTACATCTCTCACGGATTG 59.721 45.833 0.00 0.00 0.00 2.67
246 247 3.898482 TCCTACATCTCTCACGGATTGA 58.102 45.455 0.00 0.00 0.00 2.57
247 248 4.474394 TCCTACATCTCTCACGGATTGAT 58.526 43.478 0.00 0.00 32.17 2.57
248 249 5.631119 TCCTACATCTCTCACGGATTGATA 58.369 41.667 0.00 0.00 32.17 2.15
249 250 6.068670 TCCTACATCTCTCACGGATTGATAA 58.931 40.000 0.00 0.00 32.17 1.75
250 251 6.549736 TCCTACATCTCTCACGGATTGATAAA 59.450 38.462 0.00 0.00 32.17 1.40
251 252 7.233553 TCCTACATCTCTCACGGATTGATAAAT 59.766 37.037 0.00 0.00 32.17 1.40
252 253 7.543868 CCTACATCTCTCACGGATTGATAAATC 59.456 40.741 0.00 0.00 32.17 2.17
253 254 7.060383 ACATCTCTCACGGATTGATAAATCT 57.940 36.000 2.71 0.00 32.17 2.40
254 255 7.504403 ACATCTCTCACGGATTGATAAATCTT 58.496 34.615 2.71 0.00 32.17 2.40
255 256 8.642432 ACATCTCTCACGGATTGATAAATCTTA 58.358 33.333 2.71 0.00 32.17 2.10
256 257 9.138062 CATCTCTCACGGATTGATAAATCTTAG 57.862 37.037 2.71 0.00 32.17 2.18
257 258 7.661968 TCTCTCACGGATTGATAAATCTTAGG 58.338 38.462 2.71 0.00 32.17 2.69
258 259 7.287927 TCTCTCACGGATTGATAAATCTTAGGT 59.712 37.037 2.71 0.00 32.17 3.08
259 260 7.434492 TCTCACGGATTGATAAATCTTAGGTC 58.566 38.462 2.71 0.00 32.17 3.85
260 261 7.069455 TCTCACGGATTGATAAATCTTAGGTCA 59.931 37.037 2.71 0.00 32.17 4.02
261 262 7.735917 TCACGGATTGATAAATCTTAGGTCAT 58.264 34.615 2.71 0.00 0.00 3.06
262 263 7.872993 TCACGGATTGATAAATCTTAGGTCATC 59.127 37.037 2.71 0.00 0.00 2.92
263 264 7.118390 CACGGATTGATAAATCTTAGGTCATCC 59.882 40.741 2.71 0.00 0.00 3.51
264 265 7.161404 CGGATTGATAAATCTTAGGTCATCCA 58.839 38.462 2.71 0.00 35.89 3.41
265 266 7.118390 CGGATTGATAAATCTTAGGTCATCCAC 59.882 40.741 2.71 0.00 35.89 4.02
266 267 8.160106 GGATTGATAAATCTTAGGTCATCCACT 58.840 37.037 2.71 0.00 35.89 4.00
267 268 9.566432 GATTGATAAATCTTAGGTCATCCACTT 57.434 33.333 0.00 0.00 35.89 3.16
268 269 8.737168 TTGATAAATCTTAGGTCATCCACTTG 57.263 34.615 0.00 0.00 35.89 3.16
269 270 8.089625 TGATAAATCTTAGGTCATCCACTTGA 57.910 34.615 0.00 0.00 35.89 3.02
270 271 8.206867 TGATAAATCTTAGGTCATCCACTTGAG 58.793 37.037 0.00 0.00 35.89 3.02
271 272 5.365021 AATCTTAGGTCATCCACTTGAGG 57.635 43.478 0.00 0.00 35.89 3.86
272 273 4.061131 TCTTAGGTCATCCACTTGAGGA 57.939 45.455 0.00 0.00 43.01 3.71
273 274 4.425772 TCTTAGGTCATCCACTTGAGGAA 58.574 43.478 0.00 0.00 41.92 3.36
274 275 4.844085 TCTTAGGTCATCCACTTGAGGAAA 59.156 41.667 0.00 0.00 41.92 3.13
275 276 5.309543 TCTTAGGTCATCCACTTGAGGAAAA 59.690 40.000 0.00 0.00 41.92 2.29
276 277 4.664688 AGGTCATCCACTTGAGGAAAAT 57.335 40.909 0.00 0.00 41.92 1.82
277 278 5.003096 AGGTCATCCACTTGAGGAAAATT 57.997 39.130 0.00 0.00 41.92 1.82
278 279 4.768968 AGGTCATCCACTTGAGGAAAATTG 59.231 41.667 0.00 0.00 41.92 2.32
279 280 4.488879 GTCATCCACTTGAGGAAAATTGC 58.511 43.478 0.00 0.00 41.92 3.56
280 281 4.219288 GTCATCCACTTGAGGAAAATTGCT 59.781 41.667 0.00 0.00 41.92 3.91
281 282 5.415701 GTCATCCACTTGAGGAAAATTGCTA 59.584 40.000 0.00 0.00 41.92 3.49
282 283 5.415701 TCATCCACTTGAGGAAAATTGCTAC 59.584 40.000 0.00 0.00 41.92 3.58
283 284 4.985538 TCCACTTGAGGAAAATTGCTACT 58.014 39.130 0.00 0.00 33.93 2.57
284 285 4.761739 TCCACTTGAGGAAAATTGCTACTG 59.238 41.667 0.00 0.00 33.93 2.74
285 286 4.520492 CCACTTGAGGAAAATTGCTACTGT 59.480 41.667 0.00 0.00 0.00 3.55
286 287 5.335191 CCACTTGAGGAAAATTGCTACTGTC 60.335 44.000 0.00 0.00 0.00 3.51
287 288 4.762251 ACTTGAGGAAAATTGCTACTGTCC 59.238 41.667 0.00 0.00 0.00 4.02
288 289 4.640771 TGAGGAAAATTGCTACTGTCCT 57.359 40.909 0.00 0.00 38.21 3.85
289 290 5.755409 TGAGGAAAATTGCTACTGTCCTA 57.245 39.130 0.00 0.00 35.63 2.94
290 291 5.488341 TGAGGAAAATTGCTACTGTCCTAC 58.512 41.667 0.00 0.00 35.63 3.18
291 292 5.012664 TGAGGAAAATTGCTACTGTCCTACA 59.987 40.000 0.00 0.00 35.63 2.74
292 293 5.876357 AGGAAAATTGCTACTGTCCTACAA 58.124 37.500 0.00 0.00 33.70 2.41
293 294 6.303839 AGGAAAATTGCTACTGTCCTACAAA 58.696 36.000 0.00 0.00 33.70 2.83
294 295 6.775629 AGGAAAATTGCTACTGTCCTACAAAA 59.224 34.615 0.00 0.00 33.70 2.44
295 296 6.861572 GGAAAATTGCTACTGTCCTACAAAAC 59.138 38.462 0.00 0.00 0.00 2.43
296 297 7.255486 GGAAAATTGCTACTGTCCTACAAAACT 60.255 37.037 0.00 0.00 0.00 2.66
297 298 6.803154 AATTGCTACTGTCCTACAAAACTC 57.197 37.500 0.00 0.00 0.00 3.01
298 299 5.546621 TTGCTACTGTCCTACAAAACTCT 57.453 39.130 0.00 0.00 0.00 3.24
299 300 4.883083 TGCTACTGTCCTACAAAACTCTG 58.117 43.478 0.00 0.00 0.00 3.35
300 301 3.680458 GCTACTGTCCTACAAAACTCTGC 59.320 47.826 0.00 0.00 0.00 4.26
301 302 2.755650 ACTGTCCTACAAAACTCTGCG 58.244 47.619 0.00 0.00 0.00 5.18
302 303 1.461127 CTGTCCTACAAAACTCTGCGC 59.539 52.381 0.00 0.00 0.00 6.09
303 304 1.070134 TGTCCTACAAAACTCTGCGCT 59.930 47.619 9.73 0.00 0.00 5.92
304 305 2.143925 GTCCTACAAAACTCTGCGCTT 58.856 47.619 9.73 0.00 0.00 4.68
305 306 2.096218 GTCCTACAAAACTCTGCGCTTG 60.096 50.000 9.73 6.07 0.00 4.01
306 307 1.197721 CCTACAAAACTCTGCGCTTGG 59.802 52.381 9.73 0.20 0.00 3.61
307 308 2.143122 CTACAAAACTCTGCGCTTGGA 58.857 47.619 9.73 0.00 0.00 3.53
308 309 0.947244 ACAAAACTCTGCGCTTGGAG 59.053 50.000 9.73 15.60 35.86 3.86
309 310 0.239347 CAAAACTCTGCGCTTGGAGG 59.761 55.000 22.09 10.10 34.22 4.30
310 311 1.518903 AAAACTCTGCGCTTGGAGGC 61.519 55.000 22.09 0.00 34.22 4.70
311 312 3.909086 AACTCTGCGCTTGGAGGCC 62.909 63.158 22.09 0.00 34.22 5.19
317 318 3.365265 CGCTTGGAGGCCCAACAC 61.365 66.667 0.00 0.00 46.94 3.32
318 319 3.365265 GCTTGGAGGCCCAACACG 61.365 66.667 0.00 0.00 46.94 4.49
319 320 2.113139 CTTGGAGGCCCAACACGT 59.887 61.111 0.00 0.00 46.94 4.49
320 321 2.203280 TTGGAGGCCCAACACGTG 60.203 61.111 15.48 15.48 46.94 4.49
321 322 2.958578 CTTGGAGGCCCAACACGTGT 62.959 60.000 17.22 17.22 46.94 4.49
322 323 2.668550 GGAGGCCCAACACGTGTC 60.669 66.667 23.61 9.25 0.00 3.67
323 324 2.426023 GAGGCCCAACACGTGTCT 59.574 61.111 23.61 14.32 0.00 3.41
324 325 1.669440 GAGGCCCAACACGTGTCTA 59.331 57.895 23.61 0.00 0.00 2.59
325 326 0.669625 GAGGCCCAACACGTGTCTAC 60.670 60.000 23.61 11.73 0.00 2.59
326 327 1.070105 GGCCCAACACGTGTCTACA 59.930 57.895 23.61 0.00 0.00 2.74
327 328 0.533308 GGCCCAACACGTGTCTACAA 60.533 55.000 23.61 0.00 0.00 2.41
328 329 0.865769 GCCCAACACGTGTCTACAAG 59.134 55.000 23.61 9.00 0.00 3.16
329 330 1.539496 GCCCAACACGTGTCTACAAGA 60.539 52.381 23.61 0.00 0.00 3.02
330 331 2.828877 CCCAACACGTGTCTACAAGAA 58.171 47.619 23.61 0.00 0.00 2.52
331 332 3.399330 CCCAACACGTGTCTACAAGAAT 58.601 45.455 23.61 0.00 0.00 2.40
332 333 4.562082 CCCAACACGTGTCTACAAGAATA 58.438 43.478 23.61 0.00 0.00 1.75
333 334 4.992319 CCCAACACGTGTCTACAAGAATAA 59.008 41.667 23.61 0.00 0.00 1.40
334 335 5.467399 CCCAACACGTGTCTACAAGAATAAA 59.533 40.000 23.61 0.00 0.00 1.40
335 336 6.347402 CCCAACACGTGTCTACAAGAATAAAG 60.347 42.308 23.61 0.00 0.00 1.85
336 337 6.202188 CCAACACGTGTCTACAAGAATAAAGT 59.798 38.462 23.61 0.00 0.00 2.66
337 338 7.254658 CCAACACGTGTCTACAAGAATAAAGTT 60.255 37.037 23.61 0.00 0.00 2.66
338 339 7.173863 ACACGTGTCTACAAGAATAAAGTTG 57.826 36.000 17.22 0.00 0.00 3.16
339 340 6.071463 CACGTGTCTACAAGAATAAAGTTGC 58.929 40.000 7.58 0.00 0.00 4.17
340 341 5.107607 ACGTGTCTACAAGAATAAAGTTGCG 60.108 40.000 3.01 0.00 0.00 4.85
341 342 5.107607 CGTGTCTACAAGAATAAAGTTGCGT 60.108 40.000 0.00 0.00 0.00 5.24
342 343 6.088483 CGTGTCTACAAGAATAAAGTTGCGTA 59.912 38.462 0.00 0.00 0.00 4.42
343 344 7.445836 GTGTCTACAAGAATAAAGTTGCGTAG 58.554 38.462 0.00 0.00 0.00 3.51
358 359 1.559831 CGTAGCAGACATCAATCGCA 58.440 50.000 0.00 0.00 0.00 5.10
359 360 2.130395 CGTAGCAGACATCAATCGCAT 58.870 47.619 0.00 0.00 0.00 4.73
360 361 3.308530 CGTAGCAGACATCAATCGCATA 58.691 45.455 0.00 0.00 0.00 3.14
361 362 3.922850 CGTAGCAGACATCAATCGCATAT 59.077 43.478 0.00 0.00 0.00 1.78
362 363 4.386954 CGTAGCAGACATCAATCGCATATT 59.613 41.667 0.00 0.00 0.00 1.28
363 364 5.443824 CGTAGCAGACATCAATCGCATATTC 60.444 44.000 0.00 0.00 0.00 1.75
364 365 3.750130 AGCAGACATCAATCGCATATTCC 59.250 43.478 0.00 0.00 0.00 3.01
365 366 3.499537 GCAGACATCAATCGCATATTCCA 59.500 43.478 0.00 0.00 0.00 3.53
366 367 4.378149 GCAGACATCAATCGCATATTCCAG 60.378 45.833 0.00 0.00 0.00 3.86
367 368 4.992951 CAGACATCAATCGCATATTCCAGA 59.007 41.667 0.00 0.00 0.00 3.86
368 369 5.467735 CAGACATCAATCGCATATTCCAGAA 59.532 40.000 0.00 0.00 0.00 3.02
369 370 6.148976 CAGACATCAATCGCATATTCCAGAAT 59.851 38.462 0.00 0.00 34.93 2.40
370 371 6.370994 AGACATCAATCGCATATTCCAGAATC 59.629 38.462 0.00 0.00 32.50 2.52
371 372 5.999600 ACATCAATCGCATATTCCAGAATCA 59.000 36.000 0.00 0.00 32.50 2.57
372 373 6.657966 ACATCAATCGCATATTCCAGAATCAT 59.342 34.615 0.00 0.00 32.50 2.45
373 374 7.825761 ACATCAATCGCATATTCCAGAATCATA 59.174 33.333 0.00 0.00 32.50 2.15
374 375 8.671028 CATCAATCGCATATTCCAGAATCATAA 58.329 33.333 0.00 0.00 32.50 1.90
375 376 8.797350 TCAATCGCATATTCCAGAATCATAAT 57.203 30.769 0.00 0.00 32.50 1.28
376 377 9.889128 TCAATCGCATATTCCAGAATCATAATA 57.111 29.630 0.00 0.00 32.50 0.98
378 379 9.896645 AATCGCATATTCCAGAATCATAATAGT 57.103 29.630 0.00 0.00 32.50 2.12
379 380 9.896645 ATCGCATATTCCAGAATCATAATAGTT 57.103 29.630 0.00 0.00 32.50 2.24
441 442 6.551385 AGATCGATTGCTAAGGCTAATTTG 57.449 37.500 0.00 0.00 39.59 2.32
485 486 4.284234 AGGTTTAGAGCAACAATGGCAAAT 59.716 37.500 0.00 0.00 0.00 2.32
488 489 6.648725 GGTTTAGAGCAACAATGGCAAATTTA 59.351 34.615 0.00 0.00 0.00 1.40
489 490 7.148590 GGTTTAGAGCAACAATGGCAAATTTAG 60.149 37.037 0.00 0.00 0.00 1.85
490 491 5.473066 AGAGCAACAATGGCAAATTTAGT 57.527 34.783 0.00 0.00 0.00 2.24
491 492 5.473039 AGAGCAACAATGGCAAATTTAGTC 58.527 37.500 0.00 0.00 0.00 2.59
492 493 5.010922 AGAGCAACAATGGCAAATTTAGTCA 59.989 36.000 0.00 0.00 0.00 3.41
493 494 5.609423 AGCAACAATGGCAAATTTAGTCAA 58.391 33.333 0.00 0.00 0.00 3.18
494 495 6.054295 AGCAACAATGGCAAATTTAGTCAAA 58.946 32.000 0.00 0.00 0.00 2.69
532 533 7.563906 AGAACCATTTTCAAAATCTCCAACAA 58.436 30.769 0.00 0.00 0.00 2.83
533 534 7.712205 AGAACCATTTTCAAAATCTCCAACAAG 59.288 33.333 0.00 0.00 0.00 3.16
534 535 7.123355 ACCATTTTCAAAATCTCCAACAAGA 57.877 32.000 0.00 0.00 0.00 3.02
535 536 7.212274 ACCATTTTCAAAATCTCCAACAAGAG 58.788 34.615 0.00 0.00 35.04 2.85
536 537 6.146673 CCATTTTCAAAATCTCCAACAAGAGC 59.853 38.462 0.00 0.00 33.66 4.09
537 538 4.853924 TTCAAAATCTCCAACAAGAGCC 57.146 40.909 0.00 0.00 33.66 4.70
538 539 3.831323 TCAAAATCTCCAACAAGAGCCA 58.169 40.909 0.00 0.00 33.66 4.75
539 540 3.569701 TCAAAATCTCCAACAAGAGCCAC 59.430 43.478 0.00 0.00 33.66 5.01
540 541 3.515602 AAATCTCCAACAAGAGCCACT 57.484 42.857 0.00 0.00 33.66 4.00
541 542 3.515602 AATCTCCAACAAGAGCCACTT 57.484 42.857 0.00 0.00 39.70 3.16
542 543 3.515602 ATCTCCAACAAGAGCCACTTT 57.484 42.857 0.00 0.00 36.61 2.66
543 544 3.297134 TCTCCAACAAGAGCCACTTTT 57.703 42.857 0.00 0.00 36.61 2.27
544 545 3.631250 TCTCCAACAAGAGCCACTTTTT 58.369 40.909 0.00 0.00 36.61 1.94
597 598 4.351874 TCCAACTAGAACCACTTTCCAG 57.648 45.455 0.00 0.00 34.32 3.86
606 607 7.996644 ACTAGAACCACTTTCCAGTTTTAATCA 59.003 33.333 0.00 0.00 32.81 2.57
645 647 4.477213 TGGTAGAAAAGAAAGGATAGGGGG 59.523 45.833 0.00 0.00 0.00 5.40
650 652 6.036631 AGAAAAGAAAGGATAGGGGGAAGTA 58.963 40.000 0.00 0.00 0.00 2.24
663 665 6.652205 AGGGGGAAGTATAATTTGTTCTGA 57.348 37.500 0.00 0.00 0.00 3.27
711 714 5.241728 AGCGCTTTCATTTAACCTCTTCTTT 59.758 36.000 2.64 0.00 0.00 2.52
718 721 9.847224 TTTCATTTAACCTCTTCTTTGAGTAGT 57.153 29.630 0.00 0.00 32.50 2.73
851 855 1.212935 ACTGATAGGCGGATTTGGCTT 59.787 47.619 0.00 0.00 42.97 4.35
886 893 8.131731 GTGTTTATGATAGATGAGGCCTTTTTC 58.868 37.037 6.77 4.40 0.00 2.29
909 916 3.888934 CCTATGTGGCATAACATTTCGC 58.111 45.455 4.50 0.00 41.09 4.70
911 918 1.443802 TGTGGCATAACATTTCGCGA 58.556 45.000 3.71 3.71 0.00 5.87
914 921 1.129624 TGGCATAACATTTCGCGACAC 59.870 47.619 9.15 0.00 0.00 3.67
1007 1021 1.462616 TGTTATCAGCCCATGTGCAC 58.537 50.000 10.75 10.75 0.00 4.57
1017 1031 3.952508 ATGTGCACCCTCGCCACA 61.953 61.111 15.69 0.00 0.00 4.17
1195 1223 2.052690 ACGCTGGGCATCTACTCGT 61.053 57.895 0.00 0.00 0.00 4.18
1274 3168 4.733542 CGGTGGGGGCCAAATCGT 62.734 66.667 4.39 0.00 34.18 3.73
1359 3253 4.927782 GGCTCACGTGGTGGTGCA 62.928 66.667 17.00 0.00 37.83 4.57
1529 3426 3.853597 GACCGACGCCACCGAGTTT 62.854 63.158 0.00 0.00 38.29 2.66
1532 3429 1.952133 CGACGCCACCGAGTTTGAA 60.952 57.895 0.00 0.00 38.29 2.69
1663 3703 0.581529 GGCTCTTTTTGGCAAAACGC 59.418 50.000 24.04 23.06 41.28 4.84
1677 3717 2.401583 AAACGCTATGCCACATCAGA 57.598 45.000 0.00 0.00 0.00 3.27
1792 3836 5.880054 TTGCAAAGAAACTGTATCCTAGC 57.120 39.130 0.00 0.00 0.00 3.42
1824 3869 5.009610 GCAAATCTAAACCTCAAAGTGGTGA 59.990 40.000 0.00 0.00 37.93 4.02
1833 3878 4.220602 ACCTCAAAGTGGTGATTTTATGCC 59.779 41.667 0.00 0.00 36.30 4.40
1844 3889 5.067283 GGTGATTTTATGCCATTTACTCGGT 59.933 40.000 0.00 0.00 0.00 4.69
1845 3890 6.261381 GGTGATTTTATGCCATTTACTCGGTA 59.739 38.462 0.00 0.00 0.00 4.02
1846 3891 7.352739 GTGATTTTATGCCATTTACTCGGTAG 58.647 38.462 0.00 0.00 0.00 3.18
1847 3892 7.012044 GTGATTTTATGCCATTTACTCGGTAGT 59.988 37.037 0.00 0.00 39.91 2.73
1848 3893 6.671614 TTTTATGCCATTTACTCGGTAGTG 57.328 37.500 0.00 0.00 36.36 2.74
2063 4108 1.730547 GCCAACACAAGCACATCGC 60.731 57.895 0.00 0.00 42.91 4.58
2072 4117 3.313750 GCACATCGCTCGATCCAC 58.686 61.111 1.30 0.00 37.77 4.02
2093 4141 1.381191 TAGGCATGTCGAGGCAGGA 60.381 57.895 6.07 0.00 0.00 3.86
2102 4150 4.436998 GAGGCAGGACGTGGACGG 62.437 72.222 0.00 0.00 44.95 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.986135 ACAAAAACGGTATTGCAATGCTTAA 59.014 32.000 24.03 1.03 0.00 1.85
2 3 4.210955 CACAAAAACGGTATTGCAATGCTT 59.789 37.500 24.03 11.08 0.00 3.91
3 4 3.740321 CACAAAAACGGTATTGCAATGCT 59.260 39.130 24.03 5.54 0.00 3.79
4 5 3.664014 GCACAAAAACGGTATTGCAATGC 60.664 43.478 22.27 20.14 0.00 3.56
5 6 3.120718 GGCACAAAAACGGTATTGCAATG 60.121 43.478 22.27 7.93 0.00 2.82
6 7 3.063485 GGCACAAAAACGGTATTGCAAT 58.937 40.909 17.56 17.56 0.00 3.56
7 8 2.474816 GGCACAAAAACGGTATTGCAA 58.525 42.857 0.00 0.00 0.00 4.08
8 9 1.269831 GGGCACAAAAACGGTATTGCA 60.270 47.619 6.52 0.00 0.00 4.08
9 10 1.424403 GGGCACAAAAACGGTATTGC 58.576 50.000 6.52 0.00 0.00 3.56
10 11 1.001158 ACGGGCACAAAAACGGTATTG 60.001 47.619 5.37 5.37 0.00 1.90
11 12 1.320507 ACGGGCACAAAAACGGTATT 58.679 45.000 0.00 0.00 0.00 1.89
12 13 1.320507 AACGGGCACAAAAACGGTAT 58.679 45.000 0.00 0.00 0.00 2.73
13 14 1.101331 AAACGGGCACAAAAACGGTA 58.899 45.000 0.00 0.00 0.00 4.02
14 15 1.101331 TAAACGGGCACAAAAACGGT 58.899 45.000 0.00 0.00 0.00 4.83
15 16 1.065851 AGTAAACGGGCACAAAAACGG 59.934 47.619 0.00 0.00 0.00 4.44
16 17 2.478547 AGTAAACGGGCACAAAAACG 57.521 45.000 0.00 0.00 0.00 3.60
17 18 5.332732 GCAAATAGTAAACGGGCACAAAAAC 60.333 40.000 0.00 0.00 0.00 2.43
18 19 4.745620 GCAAATAGTAAACGGGCACAAAAA 59.254 37.500 0.00 0.00 0.00 1.94
19 20 4.038162 AGCAAATAGTAAACGGGCACAAAA 59.962 37.500 0.00 0.00 0.00 2.44
20 21 3.570550 AGCAAATAGTAAACGGGCACAAA 59.429 39.130 0.00 0.00 0.00 2.83
21 22 3.150767 AGCAAATAGTAAACGGGCACAA 58.849 40.909 0.00 0.00 0.00 3.33
22 23 2.785562 AGCAAATAGTAAACGGGCACA 58.214 42.857 0.00 0.00 0.00 4.57
23 24 3.064408 GGTAGCAAATAGTAAACGGGCAC 59.936 47.826 0.00 0.00 0.00 5.01
24 25 3.054948 AGGTAGCAAATAGTAAACGGGCA 60.055 43.478 0.00 0.00 0.00 5.36
25 26 3.538591 AGGTAGCAAATAGTAAACGGGC 58.461 45.455 0.00 0.00 0.00 6.13
26 27 4.201881 GCAAGGTAGCAAATAGTAAACGGG 60.202 45.833 0.00 0.00 0.00 5.28
27 28 4.634443 AGCAAGGTAGCAAATAGTAAACGG 59.366 41.667 0.00 0.00 36.85 4.44
28 29 5.121768 ACAGCAAGGTAGCAAATAGTAAACG 59.878 40.000 0.00 0.00 36.85 3.60
29 30 6.496338 ACAGCAAGGTAGCAAATAGTAAAC 57.504 37.500 0.00 0.00 36.85 2.01
30 31 7.519032 AAACAGCAAGGTAGCAAATAGTAAA 57.481 32.000 0.00 0.00 36.85 2.01
31 32 7.519032 AAAACAGCAAGGTAGCAAATAGTAA 57.481 32.000 0.00 0.00 36.85 2.24
32 33 7.519032 AAAAACAGCAAGGTAGCAAATAGTA 57.481 32.000 0.00 0.00 36.85 1.82
33 34 6.405278 AAAAACAGCAAGGTAGCAAATAGT 57.595 33.333 0.00 0.00 36.85 2.12
34 35 8.986477 AATAAAAACAGCAAGGTAGCAAATAG 57.014 30.769 0.00 0.00 36.85 1.73
36 37 9.942850 ATAAATAAAAACAGCAAGGTAGCAAAT 57.057 25.926 0.00 0.00 36.85 2.32
37 38 9.771534 AATAAATAAAAACAGCAAGGTAGCAAA 57.228 25.926 0.00 0.00 36.85 3.68
38 39 9.771534 AAATAAATAAAAACAGCAAGGTAGCAA 57.228 25.926 0.00 0.00 36.85 3.91
95 96 8.768955 GCGAAGAGATGATGATAAAAGTGTAAT 58.231 33.333 0.00 0.00 0.00 1.89
96 97 7.224753 GGCGAAGAGATGATGATAAAAGTGTAA 59.775 37.037 0.00 0.00 0.00 2.41
97 98 6.701841 GGCGAAGAGATGATGATAAAAGTGTA 59.298 38.462 0.00 0.00 0.00 2.90
98 99 5.525378 GGCGAAGAGATGATGATAAAAGTGT 59.475 40.000 0.00 0.00 0.00 3.55
99 100 5.332883 CGGCGAAGAGATGATGATAAAAGTG 60.333 44.000 0.00 0.00 0.00 3.16
100 101 4.747108 CGGCGAAGAGATGATGATAAAAGT 59.253 41.667 0.00 0.00 0.00 2.66
101 102 4.984785 TCGGCGAAGAGATGATGATAAAAG 59.015 41.667 7.35 0.00 0.00 2.27
102 103 4.944048 TCGGCGAAGAGATGATGATAAAA 58.056 39.130 7.35 0.00 0.00 1.52
103 104 4.584327 TCGGCGAAGAGATGATGATAAA 57.416 40.909 7.35 0.00 0.00 1.40
104 105 4.038042 AGTTCGGCGAAGAGATGATGATAA 59.962 41.667 24.41 0.00 0.00 1.75
105 106 3.570125 AGTTCGGCGAAGAGATGATGATA 59.430 43.478 24.41 0.00 0.00 2.15
106 107 2.363680 AGTTCGGCGAAGAGATGATGAT 59.636 45.455 24.41 0.00 0.00 2.45
107 108 1.751351 AGTTCGGCGAAGAGATGATGA 59.249 47.619 24.41 0.00 0.00 2.92
108 109 2.215907 AGTTCGGCGAAGAGATGATG 57.784 50.000 24.41 0.00 0.00 3.07
109 110 2.952978 ACTAGTTCGGCGAAGAGATGAT 59.047 45.455 28.47 10.95 0.00 2.45
110 111 2.097629 CACTAGTTCGGCGAAGAGATGA 59.902 50.000 28.47 4.90 0.00 2.92
111 112 2.455032 CACTAGTTCGGCGAAGAGATG 58.545 52.381 28.47 19.11 0.00 2.90
112 113 1.202313 GCACTAGTTCGGCGAAGAGAT 60.202 52.381 28.47 16.59 0.00 2.75
113 114 0.170561 GCACTAGTTCGGCGAAGAGA 59.829 55.000 28.47 15.42 0.00 3.10
114 115 0.109272 TGCACTAGTTCGGCGAAGAG 60.109 55.000 24.41 23.53 0.00 2.85
115 116 0.388134 GTGCACTAGTTCGGCGAAGA 60.388 55.000 24.41 13.14 0.00 2.87
116 117 1.352156 GGTGCACTAGTTCGGCGAAG 61.352 60.000 24.41 14.27 0.00 3.79
117 118 1.373748 GGTGCACTAGTTCGGCGAA 60.374 57.895 19.83 19.83 0.00 4.70
118 119 0.961857 TAGGTGCACTAGTTCGGCGA 60.962 55.000 17.98 4.99 0.00 5.54
119 120 0.102481 ATAGGTGCACTAGTTCGGCG 59.898 55.000 17.98 0.00 34.56 6.46
120 121 2.100252 TGTATAGGTGCACTAGTTCGGC 59.900 50.000 17.98 0.00 34.56 5.54
121 122 4.380841 TTGTATAGGTGCACTAGTTCGG 57.619 45.455 17.98 0.00 34.56 4.30
122 123 6.903883 AAATTGTATAGGTGCACTAGTTCG 57.096 37.500 17.98 0.00 34.56 3.95
123 124 7.335924 TGGAAAATTGTATAGGTGCACTAGTTC 59.664 37.037 17.98 5.92 34.56 3.01
124 125 7.172342 TGGAAAATTGTATAGGTGCACTAGTT 58.828 34.615 17.98 2.97 34.56 2.24
125 126 6.717289 TGGAAAATTGTATAGGTGCACTAGT 58.283 36.000 17.98 4.45 34.56 2.57
126 127 7.807977 ATGGAAAATTGTATAGGTGCACTAG 57.192 36.000 17.98 0.00 34.56 2.57
127 128 9.860650 ATAATGGAAAATTGTATAGGTGCACTA 57.139 29.630 17.98 7.61 35.80 2.74
128 129 8.766994 ATAATGGAAAATTGTATAGGTGCACT 57.233 30.769 17.98 5.41 0.00 4.40
138 139 9.261035 ACACACCCAATATAATGGAAAATTGTA 57.739 29.630 8.51 0.00 43.54 2.41
139 140 8.144862 ACACACCCAATATAATGGAAAATTGT 57.855 30.769 8.51 1.90 43.54 2.71
140 141 8.881743 CAACACACCCAATATAATGGAAAATTG 58.118 33.333 8.51 3.15 43.54 2.32
141 142 8.046107 CCAACACACCCAATATAATGGAAAATT 58.954 33.333 8.51 0.00 43.54 1.82
142 143 7.365473 CCCAACACACCCAATATAATGGAAAAT 60.365 37.037 8.51 0.00 43.54 1.82
143 144 6.070538 CCCAACACACCCAATATAATGGAAAA 60.071 38.462 8.51 0.00 43.54 2.29
144 145 5.423610 CCCAACACACCCAATATAATGGAAA 59.576 40.000 8.51 0.00 43.54 3.13
145 146 4.959210 CCCAACACACCCAATATAATGGAA 59.041 41.667 8.51 0.00 43.54 3.53
146 147 4.541705 CCCAACACACCCAATATAATGGA 58.458 43.478 8.51 0.00 43.54 3.41
147 148 3.640967 CCCCAACACACCCAATATAATGG 59.359 47.826 0.00 0.00 40.35 3.16
148 149 4.340950 GTCCCCAACACACCCAATATAATG 59.659 45.833 0.00 0.00 0.00 1.90
149 150 4.017037 TGTCCCCAACACACCCAATATAAT 60.017 41.667 0.00 0.00 31.20 1.28
150 151 3.333980 TGTCCCCAACACACCCAATATAA 59.666 43.478 0.00 0.00 31.20 0.98
151 152 2.920271 TGTCCCCAACACACCCAATATA 59.080 45.455 0.00 0.00 31.20 0.86
152 153 1.713647 TGTCCCCAACACACCCAATAT 59.286 47.619 0.00 0.00 31.20 1.28
153 154 1.149986 TGTCCCCAACACACCCAATA 58.850 50.000 0.00 0.00 31.20 1.90
154 155 1.934410 TGTCCCCAACACACCCAAT 59.066 52.632 0.00 0.00 31.20 3.16
155 156 3.428100 TGTCCCCAACACACCCAA 58.572 55.556 0.00 0.00 31.20 4.12
162 163 3.138283 AGAAATCTCTTGTGTCCCCAACA 59.862 43.478 0.00 0.00 34.78 3.33
163 164 3.756117 AGAAATCTCTTGTGTCCCCAAC 58.244 45.455 0.00 0.00 0.00 3.77
164 165 4.453480 AAGAAATCTCTTGTGTCCCCAA 57.547 40.909 0.00 0.00 40.54 4.12
174 175 4.992951 GCAACCAAATGCAAGAAATCTCTT 59.007 37.500 0.00 0.00 45.70 2.85
175 176 4.563061 GCAACCAAATGCAAGAAATCTCT 58.437 39.130 0.00 0.00 45.70 3.10
176 177 4.916099 GCAACCAAATGCAAGAAATCTC 57.084 40.909 0.00 0.00 45.70 2.75
186 187 0.609662 ATGACCCTGCAACCAAATGC 59.390 50.000 0.00 0.00 46.58 3.56
187 188 3.068560 CAAATGACCCTGCAACCAAATG 58.931 45.455 0.00 0.00 0.00 2.32
188 189 2.971330 TCAAATGACCCTGCAACCAAAT 59.029 40.909 0.00 0.00 0.00 2.32
189 190 2.364970 CTCAAATGACCCTGCAACCAAA 59.635 45.455 0.00 0.00 0.00 3.28
190 191 1.962807 CTCAAATGACCCTGCAACCAA 59.037 47.619 0.00 0.00 0.00 3.67
191 192 1.144708 TCTCAAATGACCCTGCAACCA 59.855 47.619 0.00 0.00 0.00 3.67
192 193 1.815003 CTCTCAAATGACCCTGCAACC 59.185 52.381 0.00 0.00 0.00 3.77
193 194 2.746362 CTCTCTCAAATGACCCTGCAAC 59.254 50.000 0.00 0.00 0.00 4.17
194 195 2.639347 TCTCTCTCAAATGACCCTGCAA 59.361 45.455 0.00 0.00 0.00 4.08
195 196 2.027745 GTCTCTCTCAAATGACCCTGCA 60.028 50.000 0.00 0.00 0.00 4.41
196 197 2.626840 GTCTCTCTCAAATGACCCTGC 58.373 52.381 0.00 0.00 0.00 4.85
197 198 2.568956 TGGTCTCTCTCAAATGACCCTG 59.431 50.000 8.30 0.00 45.98 4.45
198 199 2.907892 TGGTCTCTCTCAAATGACCCT 58.092 47.619 8.30 0.00 45.98 4.34
199 200 3.454082 AGATGGTCTCTCTCAAATGACCC 59.546 47.826 8.30 0.00 45.98 4.46
200 201 4.751767 AGATGGTCTCTCTCAAATGACC 57.248 45.455 0.00 0.00 46.53 4.02
201 202 5.728471 TGAAGATGGTCTCTCTCAAATGAC 58.272 41.667 0.00 0.00 31.03 3.06
202 203 6.407865 GGATGAAGATGGTCTCTCTCAAATGA 60.408 42.308 0.00 0.00 31.03 2.57
203 204 5.759273 GGATGAAGATGGTCTCTCTCAAATG 59.241 44.000 0.00 0.00 31.03 2.32
204 205 5.666718 AGGATGAAGATGGTCTCTCTCAAAT 59.333 40.000 0.00 0.00 31.03 2.32
205 206 5.028802 AGGATGAAGATGGTCTCTCTCAAA 58.971 41.667 0.00 0.00 31.03 2.69
206 207 4.618635 AGGATGAAGATGGTCTCTCTCAA 58.381 43.478 0.00 0.00 31.03 3.02
207 208 4.262891 AGGATGAAGATGGTCTCTCTCA 57.737 45.455 0.00 0.00 31.03 3.27
208 209 5.136828 TGTAGGATGAAGATGGTCTCTCTC 58.863 45.833 0.00 0.00 31.03 3.20
209 210 5.136068 TGTAGGATGAAGATGGTCTCTCT 57.864 43.478 0.00 0.00 31.03 3.10
210 211 5.774690 AGATGTAGGATGAAGATGGTCTCTC 59.225 44.000 0.00 0.00 31.03 3.20
211 212 5.714863 AGATGTAGGATGAAGATGGTCTCT 58.285 41.667 0.00 0.00 34.96 3.10
212 213 5.774690 AGAGATGTAGGATGAAGATGGTCTC 59.225 44.000 0.00 0.00 0.00 3.36
213 214 5.714863 AGAGATGTAGGATGAAGATGGTCT 58.285 41.667 0.00 0.00 0.00 3.85
214 215 5.538053 TGAGAGATGTAGGATGAAGATGGTC 59.462 44.000 0.00 0.00 0.00 4.02
215 216 5.304101 GTGAGAGATGTAGGATGAAGATGGT 59.696 44.000 0.00 0.00 0.00 3.55
216 217 5.564455 CGTGAGAGATGTAGGATGAAGATGG 60.564 48.000 0.00 0.00 0.00 3.51
217 218 5.459768 CGTGAGAGATGTAGGATGAAGATG 58.540 45.833 0.00 0.00 0.00 2.90
218 219 4.522405 CCGTGAGAGATGTAGGATGAAGAT 59.478 45.833 0.00 0.00 0.00 2.40
219 220 3.885901 CCGTGAGAGATGTAGGATGAAGA 59.114 47.826 0.00 0.00 0.00 2.87
220 221 3.885901 TCCGTGAGAGATGTAGGATGAAG 59.114 47.826 0.00 0.00 0.00 3.02
221 222 3.898482 TCCGTGAGAGATGTAGGATGAA 58.102 45.455 0.00 0.00 0.00 2.57
222 223 3.577805 TCCGTGAGAGATGTAGGATGA 57.422 47.619 0.00 0.00 0.00 2.92
223 224 4.279420 TCAATCCGTGAGAGATGTAGGATG 59.721 45.833 0.00 0.00 38.37 3.51
224 225 4.474394 TCAATCCGTGAGAGATGTAGGAT 58.526 43.478 0.00 0.00 39.89 3.24
225 226 3.898482 TCAATCCGTGAGAGATGTAGGA 58.102 45.455 0.00 0.00 0.00 2.94
226 227 4.862902 ATCAATCCGTGAGAGATGTAGG 57.137 45.455 0.00 0.00 40.43 3.18
227 228 8.303156 AGATTTATCAATCCGTGAGAGATGTAG 58.697 37.037 0.00 0.00 40.43 2.74
228 229 8.183104 AGATTTATCAATCCGTGAGAGATGTA 57.817 34.615 0.00 0.00 40.43 2.29
229 230 7.060383 AGATTTATCAATCCGTGAGAGATGT 57.940 36.000 0.00 0.00 40.43 3.06
230 231 7.959689 AAGATTTATCAATCCGTGAGAGATG 57.040 36.000 0.00 0.00 40.43 2.90
231 232 8.310382 CCTAAGATTTATCAATCCGTGAGAGAT 58.690 37.037 0.00 0.00 40.43 2.75
232 233 7.287927 ACCTAAGATTTATCAATCCGTGAGAGA 59.712 37.037 0.00 0.00 40.43 3.10
233 234 7.437748 ACCTAAGATTTATCAATCCGTGAGAG 58.562 38.462 0.00 0.00 40.43 3.20
234 235 7.069455 TGACCTAAGATTTATCAATCCGTGAGA 59.931 37.037 0.00 0.00 40.43 3.27
235 236 7.210174 TGACCTAAGATTTATCAATCCGTGAG 58.790 38.462 0.00 0.00 40.43 3.51
236 237 7.119709 TGACCTAAGATTTATCAATCCGTGA 57.880 36.000 0.00 0.00 39.95 4.35
237 238 7.118390 GGATGACCTAAGATTTATCAATCCGTG 59.882 40.741 0.00 0.00 39.95 4.94
238 239 7.162082 GGATGACCTAAGATTTATCAATCCGT 58.838 38.462 0.00 0.00 39.95 4.69
239 240 7.118390 GTGGATGACCTAAGATTTATCAATCCG 59.882 40.741 0.00 0.00 37.31 4.18
240 241 8.160106 AGTGGATGACCTAAGATTTATCAATCC 58.840 37.037 0.00 0.00 37.31 3.01
241 242 9.566432 AAGTGGATGACCTAAGATTTATCAATC 57.434 33.333 0.00 0.00 37.09 2.67
242 243 9.347240 CAAGTGGATGACCTAAGATTTATCAAT 57.653 33.333 0.00 0.00 37.04 2.57
243 244 8.548025 TCAAGTGGATGACCTAAGATTTATCAA 58.452 33.333 0.00 0.00 37.04 2.57
244 245 8.089625 TCAAGTGGATGACCTAAGATTTATCA 57.910 34.615 0.00 0.00 37.04 2.15
245 246 7.659390 CCTCAAGTGGATGACCTAAGATTTATC 59.341 40.741 0.00 0.00 37.04 1.75
246 247 7.348274 TCCTCAAGTGGATGACCTAAGATTTAT 59.652 37.037 0.00 0.00 37.04 1.40
247 248 6.672218 TCCTCAAGTGGATGACCTAAGATTTA 59.328 38.462 0.00 0.00 37.04 1.40
248 249 5.488919 TCCTCAAGTGGATGACCTAAGATTT 59.511 40.000 0.00 0.00 37.04 2.17
249 250 5.032846 TCCTCAAGTGGATGACCTAAGATT 58.967 41.667 0.00 0.00 37.04 2.40
250 251 4.624913 TCCTCAAGTGGATGACCTAAGAT 58.375 43.478 0.00 0.00 37.04 2.40
251 252 4.061131 TCCTCAAGTGGATGACCTAAGA 57.939 45.455 0.00 0.00 37.04 2.10
252 253 4.826274 TTCCTCAAGTGGATGACCTAAG 57.174 45.455 0.00 0.00 35.83 2.18
253 254 5.576563 TTTTCCTCAAGTGGATGACCTAA 57.423 39.130 0.00 0.00 35.83 2.69
254 255 5.779241 ATTTTCCTCAAGTGGATGACCTA 57.221 39.130 0.00 0.00 35.83 3.08
255 256 4.664688 ATTTTCCTCAAGTGGATGACCT 57.335 40.909 0.00 0.00 35.83 3.85
256 257 4.619160 GCAATTTTCCTCAAGTGGATGACC 60.619 45.833 0.00 0.00 35.83 4.02
257 258 4.219288 AGCAATTTTCCTCAAGTGGATGAC 59.781 41.667 0.00 0.00 35.83 3.06
258 259 4.410099 AGCAATTTTCCTCAAGTGGATGA 58.590 39.130 0.00 0.00 35.83 2.92
259 260 4.796038 AGCAATTTTCCTCAAGTGGATG 57.204 40.909 0.00 0.00 35.83 3.51
260 261 5.416952 CAGTAGCAATTTTCCTCAAGTGGAT 59.583 40.000 0.00 0.00 35.83 3.41
261 262 4.761739 CAGTAGCAATTTTCCTCAAGTGGA 59.238 41.667 0.00 0.00 0.00 4.02
262 263 4.520492 ACAGTAGCAATTTTCCTCAAGTGG 59.480 41.667 0.00 0.00 0.00 4.00
263 264 5.335191 GGACAGTAGCAATTTTCCTCAAGTG 60.335 44.000 0.00 0.00 0.00 3.16
264 265 4.762251 GGACAGTAGCAATTTTCCTCAAGT 59.238 41.667 0.00 0.00 0.00 3.16
265 266 5.006386 AGGACAGTAGCAATTTTCCTCAAG 58.994 41.667 0.00 0.00 0.00 3.02
266 267 4.985538 AGGACAGTAGCAATTTTCCTCAA 58.014 39.130 0.00 0.00 0.00 3.02
267 268 4.640771 AGGACAGTAGCAATTTTCCTCA 57.359 40.909 0.00 0.00 0.00 3.86
268 269 5.488341 TGTAGGACAGTAGCAATTTTCCTC 58.512 41.667 0.00 0.00 35.13 3.71
269 270 5.499004 TGTAGGACAGTAGCAATTTTCCT 57.501 39.130 0.00 0.00 37.28 3.36
270 271 6.569179 TTTGTAGGACAGTAGCAATTTTCC 57.431 37.500 0.00 0.00 0.00 3.13
271 272 7.649057 AGTTTTGTAGGACAGTAGCAATTTTC 58.351 34.615 0.00 0.00 0.00 2.29
272 273 7.502561 AGAGTTTTGTAGGACAGTAGCAATTTT 59.497 33.333 0.00 0.00 0.00 1.82
273 274 6.998673 AGAGTTTTGTAGGACAGTAGCAATTT 59.001 34.615 0.00 0.00 0.00 1.82
274 275 6.428159 CAGAGTTTTGTAGGACAGTAGCAATT 59.572 38.462 0.00 0.00 0.00 2.32
275 276 5.934625 CAGAGTTTTGTAGGACAGTAGCAAT 59.065 40.000 0.00 0.00 0.00 3.56
276 277 5.297547 CAGAGTTTTGTAGGACAGTAGCAA 58.702 41.667 0.00 0.00 0.00 3.91
277 278 4.799586 GCAGAGTTTTGTAGGACAGTAGCA 60.800 45.833 0.00 0.00 0.00 3.49
278 279 3.680458 GCAGAGTTTTGTAGGACAGTAGC 59.320 47.826 0.00 0.00 0.00 3.58
279 280 3.921021 CGCAGAGTTTTGTAGGACAGTAG 59.079 47.826 0.00 0.00 0.00 2.57
280 281 3.859627 GCGCAGAGTTTTGTAGGACAGTA 60.860 47.826 0.30 0.00 0.00 2.74
281 282 2.755650 CGCAGAGTTTTGTAGGACAGT 58.244 47.619 0.00 0.00 0.00 3.55
282 283 1.461127 GCGCAGAGTTTTGTAGGACAG 59.539 52.381 0.30 0.00 0.00 3.51
283 284 1.070134 AGCGCAGAGTTTTGTAGGACA 59.930 47.619 11.47 0.00 0.00 4.02
284 285 1.797025 AGCGCAGAGTTTTGTAGGAC 58.203 50.000 11.47 0.00 0.00 3.85
285 286 2.143122 CAAGCGCAGAGTTTTGTAGGA 58.857 47.619 11.47 0.00 0.00 2.94
286 287 1.197721 CCAAGCGCAGAGTTTTGTAGG 59.802 52.381 11.47 0.00 0.00 3.18
287 288 2.143122 TCCAAGCGCAGAGTTTTGTAG 58.857 47.619 11.47 0.00 0.00 2.74
288 289 2.143122 CTCCAAGCGCAGAGTTTTGTA 58.857 47.619 11.47 0.00 0.00 2.41
289 290 0.947244 CTCCAAGCGCAGAGTTTTGT 59.053 50.000 11.47 0.00 0.00 2.83
290 291 0.239347 CCTCCAAGCGCAGAGTTTTG 59.761 55.000 11.47 3.68 0.00 2.44
291 292 1.518903 GCCTCCAAGCGCAGAGTTTT 61.519 55.000 11.47 0.00 0.00 2.43
292 293 1.968540 GCCTCCAAGCGCAGAGTTT 60.969 57.895 11.47 0.00 0.00 2.66
293 294 2.359230 GCCTCCAAGCGCAGAGTT 60.359 61.111 11.47 0.00 0.00 3.01
294 295 4.400961 GGCCTCCAAGCGCAGAGT 62.401 66.667 11.47 0.00 0.00 3.24
304 305 3.469863 GACACGTGTTGGGCCTCCA 62.470 63.158 24.26 0.00 42.25 3.86
305 306 1.823169 TAGACACGTGTTGGGCCTCC 61.823 60.000 24.26 7.17 0.00 4.30
306 307 0.669625 GTAGACACGTGTTGGGCCTC 60.670 60.000 24.26 7.97 0.00 4.70
307 308 1.370064 GTAGACACGTGTTGGGCCT 59.630 57.895 24.26 16.73 0.00 5.19
308 309 0.533308 TTGTAGACACGTGTTGGGCC 60.533 55.000 24.26 9.56 0.00 5.80
309 310 0.865769 CTTGTAGACACGTGTTGGGC 59.134 55.000 24.26 9.97 0.00 5.36
310 311 2.519377 TCTTGTAGACACGTGTTGGG 57.481 50.000 24.26 10.16 0.00 4.12
311 312 6.202188 ACTTTATTCTTGTAGACACGTGTTGG 59.798 38.462 24.26 9.48 0.00 3.77
312 313 7.173863 ACTTTATTCTTGTAGACACGTGTTG 57.826 36.000 24.26 9.17 0.00 3.33
313 314 7.627340 CAACTTTATTCTTGTAGACACGTGTT 58.373 34.615 24.26 14.78 0.00 3.32
314 315 6.292703 GCAACTTTATTCTTGTAGACACGTGT 60.293 38.462 23.64 23.64 0.00 4.49
315 316 6.071463 GCAACTTTATTCTTGTAGACACGTG 58.929 40.000 15.48 15.48 0.00 4.49
316 317 5.107607 CGCAACTTTATTCTTGTAGACACGT 60.108 40.000 0.00 0.00 0.00 4.49
317 318 5.107607 ACGCAACTTTATTCTTGTAGACACG 60.108 40.000 0.00 0.00 0.00 4.49
318 319 6.224420 ACGCAACTTTATTCTTGTAGACAC 57.776 37.500 0.00 0.00 0.00 3.67
319 320 6.090358 GCTACGCAACTTTATTCTTGTAGACA 59.910 38.462 0.00 0.00 31.94 3.41
320 321 6.090358 TGCTACGCAACTTTATTCTTGTAGAC 59.910 38.462 0.00 0.00 34.76 2.59
321 322 6.160684 TGCTACGCAACTTTATTCTTGTAGA 58.839 36.000 0.00 0.00 34.76 2.59
322 323 6.310467 TCTGCTACGCAACTTTATTCTTGTAG 59.690 38.462 0.00 0.00 38.41 2.74
323 324 6.090358 GTCTGCTACGCAACTTTATTCTTGTA 59.910 38.462 0.00 0.00 38.41 2.41
324 325 4.994852 TCTGCTACGCAACTTTATTCTTGT 59.005 37.500 0.00 0.00 38.41 3.16
325 326 5.107104 TGTCTGCTACGCAACTTTATTCTTG 60.107 40.000 0.00 0.00 38.41 3.02
326 327 4.994852 TGTCTGCTACGCAACTTTATTCTT 59.005 37.500 0.00 0.00 38.41 2.52
327 328 4.566004 TGTCTGCTACGCAACTTTATTCT 58.434 39.130 0.00 0.00 38.41 2.40
328 329 4.921470 TGTCTGCTACGCAACTTTATTC 57.079 40.909 0.00 0.00 38.41 1.75
329 330 4.935205 TGATGTCTGCTACGCAACTTTATT 59.065 37.500 0.00 0.00 38.41 1.40
330 331 4.503910 TGATGTCTGCTACGCAACTTTAT 58.496 39.130 0.00 0.00 38.41 1.40
331 332 3.920446 TGATGTCTGCTACGCAACTTTA 58.080 40.909 0.00 0.00 38.41 1.85
332 333 2.766313 TGATGTCTGCTACGCAACTTT 58.234 42.857 0.00 0.00 38.41 2.66
333 334 2.455674 TGATGTCTGCTACGCAACTT 57.544 45.000 0.00 0.00 38.41 2.66
334 335 2.455674 TTGATGTCTGCTACGCAACT 57.544 45.000 0.00 0.00 38.41 3.16
335 336 2.285256 CGATTGATGTCTGCTACGCAAC 60.285 50.000 0.00 0.00 38.41 4.17
336 337 1.926510 CGATTGATGTCTGCTACGCAA 59.073 47.619 0.00 0.00 38.41 4.85
337 338 1.559831 CGATTGATGTCTGCTACGCA 58.440 50.000 0.00 0.00 36.92 5.24
338 339 0.230769 GCGATTGATGTCTGCTACGC 59.769 55.000 0.00 0.00 38.23 4.42
339 340 1.559831 TGCGATTGATGTCTGCTACG 58.440 50.000 0.00 0.00 0.00 3.51
340 341 5.163913 GGAATATGCGATTGATGTCTGCTAC 60.164 44.000 0.00 0.00 0.00 3.58
341 342 4.931601 GGAATATGCGATTGATGTCTGCTA 59.068 41.667 0.00 0.00 0.00 3.49
342 343 3.750130 GGAATATGCGATTGATGTCTGCT 59.250 43.478 0.00 0.00 0.00 4.24
343 344 3.499537 TGGAATATGCGATTGATGTCTGC 59.500 43.478 0.00 0.00 0.00 4.26
344 345 4.992951 TCTGGAATATGCGATTGATGTCTG 59.007 41.667 0.00 0.00 0.00 3.51
345 346 5.219343 TCTGGAATATGCGATTGATGTCT 57.781 39.130 0.00 0.00 0.00 3.41
346 347 5.929697 TTCTGGAATATGCGATTGATGTC 57.070 39.130 0.00 0.00 0.00 3.06
347 348 5.999600 TGATTCTGGAATATGCGATTGATGT 59.000 36.000 0.00 0.00 0.00 3.06
348 349 6.490566 TGATTCTGGAATATGCGATTGATG 57.509 37.500 0.00 0.00 0.00 3.07
349 350 8.797350 TTATGATTCTGGAATATGCGATTGAT 57.203 30.769 0.00 0.00 0.00 2.57
350 351 8.797350 ATTATGATTCTGGAATATGCGATTGA 57.203 30.769 0.00 0.00 0.00 2.57
352 353 9.896645 ACTATTATGATTCTGGAATATGCGATT 57.103 29.630 0.00 0.00 0.00 3.34
353 354 9.896645 AACTATTATGATTCTGGAATATGCGAT 57.103 29.630 0.00 0.00 0.00 4.58
414 415 7.573968 ATTAGCCTTAGCAATCGATCTTTTT 57.426 32.000 0.00 0.00 43.56 1.94
441 442 0.536724 AAAGAAAATGATGCCGGGCC 59.463 50.000 17.97 1.91 0.00 5.80
445 446 7.535139 TCTAAACCTTAAAGAAAATGATGCCG 58.465 34.615 0.00 0.00 0.00 5.69
446 447 7.489435 GCTCTAAACCTTAAAGAAAATGATGCC 59.511 37.037 0.00 0.00 0.00 4.40
541 542 3.957497 TGGCTCTTGTTGGAAGCTAAAAA 59.043 39.130 0.00 0.00 0.00 1.94
542 543 3.317993 GTGGCTCTTGTTGGAAGCTAAAA 59.682 43.478 0.00 0.00 0.00 1.52
543 544 2.884639 GTGGCTCTTGTTGGAAGCTAAA 59.115 45.455 0.00 0.00 0.00 1.85
544 545 2.106511 AGTGGCTCTTGTTGGAAGCTAA 59.893 45.455 0.00 0.00 0.00 3.09
545 546 1.699634 AGTGGCTCTTGTTGGAAGCTA 59.300 47.619 0.00 0.00 0.00 3.32
546 547 0.475906 AGTGGCTCTTGTTGGAAGCT 59.524 50.000 0.00 0.00 0.00 3.74
547 548 1.322442 AAGTGGCTCTTGTTGGAAGC 58.678 50.000 0.21 0.00 34.77 3.86
548 549 4.391405 AAAAAGTGGCTCTTGTTGGAAG 57.609 40.909 4.01 0.00 32.85 3.46
582 583 8.754991 TTGATTAAAACTGGAAAGTGGTTCTA 57.245 30.769 0.00 0.00 36.40 2.10
611 613 8.414003 CCTTTCTTTTCTACCAAGCTTTTAACT 58.586 33.333 0.00 0.00 0.00 2.24
619 621 5.590663 CCCTATCCTTTCTTTTCTACCAAGC 59.409 44.000 0.00 0.00 0.00 4.01
633 635 8.126241 ACAAATTATACTTCCCCCTATCCTTT 57.874 34.615 0.00 0.00 0.00 3.11
650 652 8.997621 ACGTACATACTGTCAGAACAAATTAT 57.002 30.769 6.91 0.00 34.24 1.28
717 720 9.946165 GGTGGTTTTATGCAATTTACTCTATAC 57.054 33.333 0.00 0.00 0.00 1.47
718 721 9.688091 TGGTGGTTTTATGCAATTTACTCTATA 57.312 29.630 0.00 0.00 0.00 1.31
719 722 8.466798 GTGGTGGTTTTATGCAATTTACTCTAT 58.533 33.333 0.00 0.00 0.00 1.98
837 841 0.039035 TAACCAAGCCAAATCCGCCT 59.961 50.000 0.00 0.00 0.00 5.52
851 855 7.269316 TCATCTATCATAAACACGCTTAACCA 58.731 34.615 0.00 0.00 0.00 3.67
943 950 7.073725 AGGGGTGTCTATGTAAAATGTATGGAT 59.926 37.037 0.00 0.00 0.00 3.41
950 957 8.746052 TGATTTAGGGGTGTCTATGTAAAATG 57.254 34.615 0.00 0.00 0.00 2.32
987 1001 2.026641 GTGCACATGGGCTGATAACAT 58.973 47.619 22.81 0.00 34.04 2.71
988 1002 1.462616 GTGCACATGGGCTGATAACA 58.537 50.000 22.81 0.00 34.04 2.41
989 1003 0.740737 GGTGCACATGGGCTGATAAC 59.259 55.000 22.81 10.30 34.04 1.89
990 1004 0.395586 GGGTGCACATGGGCTGATAA 60.396 55.000 22.81 0.00 34.04 1.75
991 1005 1.227102 GGGTGCACATGGGCTGATA 59.773 57.895 22.81 0.00 34.04 2.15
1017 1031 4.636435 CGTTGACCGCCCCAACCT 62.636 66.667 0.00 0.00 40.40 3.50
1057 1071 2.751436 GATTTGGCCTCCTGCGCA 60.751 61.111 10.98 10.98 42.61 6.09
1177 1205 2.052690 ACGAGTAGATGCCCAGCGT 61.053 57.895 0.00 0.00 0.00 5.07
1190 1218 1.827399 ATTTGACCTCCCGCACGAGT 61.827 55.000 0.00 0.00 0.00 4.18
1195 1223 2.267642 CCGATTTGACCTCCCGCA 59.732 61.111 0.00 0.00 0.00 5.69
1259 1288 3.068064 CCACGATTTGGCCCCCAC 61.068 66.667 0.00 0.00 39.07 4.61
1529 3426 2.048222 CTCCCGCAGCGTTCTTCA 60.048 61.111 15.05 0.00 0.00 3.02
1548 3586 0.463116 ACAAACCGTTCGTCAGCCTT 60.463 50.000 0.00 0.00 0.00 4.35
1608 3646 1.416030 AGCAAAAACACCCCCAACATC 59.584 47.619 0.00 0.00 0.00 3.06
1694 3737 3.308866 GCTCGGTTAAGTGCGTTTATGAT 59.691 43.478 0.00 0.00 0.00 2.45
1770 3814 4.391830 CGCTAGGATACAGTTTCTTTGCAA 59.608 41.667 0.00 0.00 41.41 4.08
1775 3819 6.128634 CGAAAAACGCTAGGATACAGTTTCTT 60.129 38.462 0.00 0.00 34.42 2.52
1792 3836 5.209240 TGAGGTTTAGATTTGCGAAAAACG 58.791 37.500 0.00 0.00 45.66 3.60
1810 3855 4.220602 GGCATAAAATCACCACTTTGAGGT 59.779 41.667 0.00 0.00 40.85 3.85
1824 3869 6.826741 ACACTACCGAGTAAATGGCATAAAAT 59.173 34.615 0.00 0.00 33.32 1.82
1833 3878 8.430801 ACTACTACTACACTACCGAGTAAATG 57.569 38.462 0.00 0.00 33.32 2.32
1844 3889 9.135189 TGTTCTTTTCCAACTACTACTACACTA 57.865 33.333 0.00 0.00 0.00 2.74
1845 3890 8.015185 TGTTCTTTTCCAACTACTACTACACT 57.985 34.615 0.00 0.00 0.00 3.55
1846 3891 8.652810 TTGTTCTTTTCCAACTACTACTACAC 57.347 34.615 0.00 0.00 0.00 2.90
1847 3892 9.841295 ATTTGTTCTTTTCCAACTACTACTACA 57.159 29.630 0.00 0.00 0.00 2.74
1992 4037 2.794282 CGCGCTGCTTATAAAATGGCAA 60.794 45.455 5.56 0.00 34.21 4.52
1993 4038 1.268488 CGCGCTGCTTATAAAATGGCA 60.268 47.619 5.56 0.00 0.00 4.92
2063 4108 0.319040 CATGCCTACGGTGGATCGAG 60.319 60.000 0.00 0.00 0.00 4.04
2067 4112 1.040893 TCGACATGCCTACGGTGGAT 61.041 55.000 0.00 0.00 0.00 3.41
2070 4115 1.226974 CCTCGACATGCCTACGGTG 60.227 63.158 0.00 0.00 0.00 4.94
2071 4116 3.077519 GCCTCGACATGCCTACGGT 62.078 63.158 0.00 0.00 0.00 4.83
2072 4117 2.279517 GCCTCGACATGCCTACGG 60.280 66.667 0.00 0.00 0.00 4.02
2319 4367 2.364186 TCCATCTGGAGCTCCGCA 60.364 61.111 27.43 16.73 39.78 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.