Multiple sequence alignment - TraesCS2A01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G185000 chr2A 100.000 3978 0 0 1 3978 145448612 145444635 0.000000e+00 7347.0
1 TraesCS2A01G185000 chr2D 95.258 2573 94 5 423 2968 154836551 154839122 0.000000e+00 4050.0
2 TraesCS2A01G185000 chr2D 96.319 978 34 1 3003 3978 97865389 97866366 0.000000e+00 1605.0
3 TraesCS2A01G185000 chr2D 100.000 45 0 0 2958 3002 154839186 154839230 2.550000e-12 84.2
4 TraesCS2A01G185000 chr2B 94.472 2587 124 7 426 3002 211996375 211998952 0.000000e+00 3967.0
5 TraesCS2A01G185000 chr5A 96.524 978 32 1 3003 3978 483276579 483275602 0.000000e+00 1616.0
6 TraesCS2A01G185000 chr5A 96.421 978 33 1 3003 3978 602839192 602838215 0.000000e+00 1611.0
7 TraesCS2A01G185000 chr5A 96.224 980 35 1 3001 3978 106360296 106361275 0.000000e+00 1604.0
8 TraesCS2A01G185000 chr1D 96.524 978 32 1 3003 3978 223524570 223523593 0.000000e+00 1616.0
9 TraesCS2A01G185000 chr7A 96.421 978 33 1 3003 3978 664227993 664228970 0.000000e+00 1611.0
10 TraesCS2A01G185000 chr7A 96.319 978 34 1 3003 3978 232384022 232384999 0.000000e+00 1605.0
11 TraesCS2A01G185000 chr7A 96.774 31 1 0 2717 2747 652233977 652234007 7.000000e-03 52.8
12 TraesCS2A01G185000 chr7D 96.224 980 35 1 3001 3978 465340564 465339585 0.000000e+00 1604.0
13 TraesCS2A01G185000 chr7D 96.875 32 1 0 2717 2748 565619466 565619497 2.000000e-03 54.7
14 TraesCS2A01G185000 chr7D 96.774 31 1 0 2717 2747 565645727 565645757 7.000000e-03 52.8
15 TraesCS2A01G185000 chr3D 96.319 978 31 2 3003 3978 496780408 496779434 0.000000e+00 1602.0
16 TraesCS2A01G185000 chr3B 100.000 33 0 0 204 236 467975399 467975431 1.190000e-05 62.1
17 TraesCS2A01G185000 chr6B 96.875 32 1 0 2717 2748 216356659 216356690 2.000000e-03 54.7
18 TraesCS2A01G185000 chr7B 96.774 31 1 0 2717 2747 617487914 617487944 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G185000 chr2A 145444635 145448612 3977 True 7347.0 7347 100.000 1 3978 1 chr2A.!!$R1 3977
1 TraesCS2A01G185000 chr2D 154836551 154839230 2679 False 2067.1 4050 97.629 423 3002 2 chr2D.!!$F2 2579
2 TraesCS2A01G185000 chr2D 97865389 97866366 977 False 1605.0 1605 96.319 3003 3978 1 chr2D.!!$F1 975
3 TraesCS2A01G185000 chr2B 211996375 211998952 2577 False 3967.0 3967 94.472 426 3002 1 chr2B.!!$F1 2576
4 TraesCS2A01G185000 chr5A 483275602 483276579 977 True 1616.0 1616 96.524 3003 3978 1 chr5A.!!$R1 975
5 TraesCS2A01G185000 chr5A 602838215 602839192 977 True 1611.0 1611 96.421 3003 3978 1 chr5A.!!$R2 975
6 TraesCS2A01G185000 chr5A 106360296 106361275 979 False 1604.0 1604 96.224 3001 3978 1 chr5A.!!$F1 977
7 TraesCS2A01G185000 chr1D 223523593 223524570 977 True 1616.0 1616 96.524 3003 3978 1 chr1D.!!$R1 975
8 TraesCS2A01G185000 chr7A 664227993 664228970 977 False 1611.0 1611 96.421 3003 3978 1 chr7A.!!$F3 975
9 TraesCS2A01G185000 chr7A 232384022 232384999 977 False 1605.0 1605 96.319 3003 3978 1 chr7A.!!$F1 975
10 TraesCS2A01G185000 chr7D 465339585 465340564 979 True 1604.0 1604 96.224 3001 3978 1 chr7D.!!$R1 977
11 TraesCS2A01G185000 chr3D 496779434 496780408 974 True 1602.0 1602 96.319 3003 3978 1 chr3D.!!$R1 975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.038251 TCGTCGCTGAACTGATGCTT 60.038 50.0 0.00 0.0 0.00 3.91 F
157 158 0.094216 CGTCGCTGAACTGATGCTTG 59.906 55.0 0.00 0.0 0.00 4.01 F
1167 1195 0.106419 AACCCCAACAATGTCACGGT 60.106 50.0 0.00 0.0 0.00 4.83 F
1774 1805 0.321919 TCAGTCAGCTTGGCATGACC 60.322 55.0 14.39 0.0 45.61 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1163 0.111639 TGGGGTTGTAGGCCTTGAAC 59.888 55.0 12.58 14.34 0.00 3.18 R
1661 1689 1.026718 GTGGTAGCATTTGAGGCGCT 61.027 55.0 7.64 0.00 39.80 5.92 R
2798 2833 0.397816 CCATCGTCTCCTCCCCTTCT 60.398 60.0 0.00 0.00 0.00 2.85 R
3645 3759 0.531200 GTACCTCGGAAGGACACCTG 59.469 60.0 0.00 0.00 46.67 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.308438 CTGAAGAAGGCCCATGTTTTG 57.692 47.619 0.00 0.00 0.00 2.44
21 22 2.892852 CTGAAGAAGGCCCATGTTTTGA 59.107 45.455 0.00 0.00 0.00 2.69
22 23 2.892852 TGAAGAAGGCCCATGTTTTGAG 59.107 45.455 0.00 0.00 0.00 3.02
23 24 1.928868 AGAAGGCCCATGTTTTGAGG 58.071 50.000 0.00 0.00 0.00 3.86
24 25 0.897621 GAAGGCCCATGTTTTGAGGG 59.102 55.000 0.00 0.00 45.68 4.30
25 26 0.486879 AAGGCCCATGTTTTGAGGGA 59.513 50.000 0.00 0.00 45.80 4.20
26 27 0.712380 AGGCCCATGTTTTGAGGGAT 59.288 50.000 0.00 0.00 45.80 3.85
27 28 1.929494 AGGCCCATGTTTTGAGGGATA 59.071 47.619 0.00 0.00 45.80 2.59
28 29 2.031870 GGCCCATGTTTTGAGGGATAC 58.968 52.381 0.00 0.00 45.80 2.24
54 55 2.525629 TGGTGGACCAGCGGAAGA 60.526 61.111 18.47 0.00 42.01 2.87
55 56 2.266055 GGTGGACCAGCGGAAGAG 59.734 66.667 8.15 0.00 35.64 2.85
56 57 2.435059 GTGGACCAGCGGAAGAGC 60.435 66.667 0.00 0.00 37.41 4.09
57 58 3.706373 TGGACCAGCGGAAGAGCC 61.706 66.667 0.00 0.00 38.01 4.70
66 67 2.269241 GGAAGAGCCGACTTGGGG 59.731 66.667 0.00 0.00 38.63 4.96
67 68 2.291043 GGAAGAGCCGACTTGGGGA 61.291 63.158 0.00 0.00 38.63 4.81
68 69 1.219393 GAAGAGCCGACTTGGGGAG 59.781 63.158 0.00 0.00 38.63 4.30
69 70 2.245438 GAAGAGCCGACTTGGGGAGG 62.245 65.000 0.00 0.00 38.63 4.30
70 71 3.003763 GAGCCGACTTGGGGAGGT 61.004 66.667 0.00 0.00 38.63 3.85
71 72 3.003763 AGCCGACTTGGGGAGGTC 61.004 66.667 0.00 0.00 38.63 3.85
72 73 3.319198 GCCGACTTGGGGAGGTCA 61.319 66.667 0.00 0.00 38.63 4.02
73 74 2.982130 CCGACTTGGGGAGGTCAG 59.018 66.667 0.00 0.00 33.19 3.51
74 75 1.609501 CCGACTTGGGGAGGTCAGA 60.610 63.158 0.00 0.00 33.19 3.27
75 76 1.592223 CGACTTGGGGAGGTCAGAC 59.408 63.158 0.00 0.00 33.19 3.51
76 77 1.889530 CGACTTGGGGAGGTCAGACC 61.890 65.000 12.25 12.25 38.99 3.85
77 78 1.889530 GACTTGGGGAGGTCAGACCG 61.890 65.000 14.32 0.35 44.90 4.79
78 79 2.606519 TTGGGGAGGTCAGACCGG 60.607 66.667 14.32 0.00 44.90 5.28
79 80 3.477956 TTGGGGAGGTCAGACCGGT 62.478 63.158 6.92 6.92 44.90 5.28
80 81 3.391382 GGGGAGGTCAGACCGGTG 61.391 72.222 14.63 0.00 44.90 4.94
81 82 2.283676 GGGAGGTCAGACCGGTGA 60.284 66.667 14.63 0.00 44.90 4.02
82 83 2.352032 GGGAGGTCAGACCGGTGAG 61.352 68.421 14.63 3.62 44.90 3.51
83 84 2.352032 GGAGGTCAGACCGGTGAGG 61.352 68.421 14.63 0.00 44.90 3.86
95 96 4.394712 GTGAGGTGGCGTGGGGAG 62.395 72.222 0.00 0.00 0.00 4.30
96 97 4.631740 TGAGGTGGCGTGGGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
97 98 3.319198 GAGGTGGCGTGGGGAGAA 61.319 66.667 0.00 0.00 0.00 2.87
98 99 2.852075 AGGTGGCGTGGGGAGAAA 60.852 61.111 0.00 0.00 0.00 2.52
99 100 2.359975 GGTGGCGTGGGGAGAAAG 60.360 66.667 0.00 0.00 0.00 2.62
100 101 2.747686 GTGGCGTGGGGAGAAAGA 59.252 61.111 0.00 0.00 0.00 2.52
101 102 1.072505 GTGGCGTGGGGAGAAAGAA 59.927 57.895 0.00 0.00 0.00 2.52
102 103 1.072505 TGGCGTGGGGAGAAAGAAC 59.927 57.895 0.00 0.00 0.00 3.01
103 104 1.674651 GGCGTGGGGAGAAAGAACC 60.675 63.158 0.00 0.00 0.00 3.62
104 105 1.674651 GCGTGGGGAGAAAGAACCC 60.675 63.158 0.00 0.00 44.94 4.11
108 109 3.553109 GGGGAGAAAGAACCCGAAG 57.447 57.895 0.00 0.00 46.42 3.79
109 110 0.691332 GGGGAGAAAGAACCCGAAGT 59.309 55.000 0.00 0.00 46.42 3.01
110 111 1.610886 GGGGAGAAAGAACCCGAAGTG 60.611 57.143 0.00 0.00 46.42 3.16
111 112 1.610886 GGGAGAAAGAACCCGAAGTGG 60.611 57.143 0.00 0.00 36.56 4.00
112 113 1.157585 GAGAAAGAACCCGAAGTGGC 58.842 55.000 0.00 0.00 35.87 5.01
113 114 0.472471 AGAAAGAACCCGAAGTGGCA 59.528 50.000 0.00 0.00 35.87 4.92
114 115 0.875059 GAAAGAACCCGAAGTGGCAG 59.125 55.000 0.00 0.00 35.87 4.85
115 116 1.172812 AAAGAACCCGAAGTGGCAGC 61.173 55.000 0.00 0.00 35.87 5.25
116 117 3.056328 GAACCCGAAGTGGCAGCC 61.056 66.667 3.66 3.66 35.87 4.85
117 118 4.660938 AACCCGAAGTGGCAGCCC 62.661 66.667 9.64 0.00 35.87 5.19
119 120 4.351054 CCCGAAGTGGCAGCCCTT 62.351 66.667 9.64 11.93 35.87 3.95
120 121 3.058160 CCGAAGTGGCAGCCCTTG 61.058 66.667 17.25 10.64 0.00 3.61
121 122 3.058160 CGAAGTGGCAGCCCTTGG 61.058 66.667 17.25 13.09 0.00 3.61
122 123 2.677875 GAAGTGGCAGCCCTTGGG 60.678 66.667 17.25 0.32 0.00 4.12
123 124 3.511610 AAGTGGCAGCCCTTGGGT 61.512 61.111 9.64 0.00 0.00 4.51
124 125 3.086764 AAGTGGCAGCCCTTGGGTT 62.087 57.895 9.64 0.00 0.00 4.11
125 126 2.524148 GTGGCAGCCCTTGGGTTT 60.524 61.111 9.64 0.00 0.00 3.27
126 127 2.203625 TGGCAGCCCTTGGGTTTC 60.204 61.111 9.64 0.00 0.00 2.78
127 128 2.997315 GGCAGCCCTTGGGTTTCC 60.997 66.667 0.00 1.25 0.00 3.13
128 129 2.203625 GCAGCCCTTGGGTTTCCA 60.204 61.111 7.61 0.00 42.25 3.53
129 130 1.610379 GCAGCCCTTGGGTTTCCAT 60.610 57.895 7.61 0.00 43.63 3.41
130 131 1.607801 GCAGCCCTTGGGTTTCCATC 61.608 60.000 7.61 0.00 43.63 3.51
131 132 0.972471 CAGCCCTTGGGTTTCCATCC 60.972 60.000 7.61 0.00 43.63 3.51
132 133 1.078347 GCCCTTGGGTTTCCATCCA 59.922 57.895 7.61 0.00 43.63 3.41
133 134 0.544120 GCCCTTGGGTTTCCATCCAA 60.544 55.000 7.61 0.00 43.63 3.53
134 135 1.266178 CCCTTGGGTTTCCATCCAAC 58.734 55.000 0.00 0.00 43.63 3.77
135 136 0.887933 CCTTGGGTTTCCATCCAACG 59.112 55.000 0.00 0.00 43.63 4.10
136 137 0.887933 CTTGGGTTTCCATCCAACGG 59.112 55.000 0.00 0.00 43.63 4.44
137 138 0.186386 TTGGGTTTCCATCCAACGGT 59.814 50.000 0.00 0.00 43.63 4.83
138 139 0.250989 TGGGTTTCCATCCAACGGTC 60.251 55.000 0.00 0.00 38.32 4.79
139 140 1.303091 GGGTTTCCATCCAACGGTCG 61.303 60.000 0.00 0.00 0.00 4.79
140 141 0.604511 GGTTTCCATCCAACGGTCGT 60.605 55.000 0.00 0.00 0.00 4.34
141 142 0.794473 GTTTCCATCCAACGGTCGTC 59.206 55.000 0.00 0.00 0.00 4.20
142 143 0.668096 TTTCCATCCAACGGTCGTCG 60.668 55.000 0.00 0.00 45.88 5.12
143 144 3.186047 CCATCCAACGGTCGTCGC 61.186 66.667 0.00 0.00 43.89 5.19
144 145 2.126071 CATCCAACGGTCGTCGCT 60.126 61.111 0.00 0.00 43.89 4.93
145 146 2.126071 ATCCAACGGTCGTCGCTG 60.126 61.111 0.00 0.19 43.89 5.18
146 147 2.632544 ATCCAACGGTCGTCGCTGA 61.633 57.895 0.00 0.00 43.89 4.26
147 148 2.149803 ATCCAACGGTCGTCGCTGAA 62.150 55.000 0.00 0.00 43.89 3.02
148 149 2.654912 CCAACGGTCGTCGCTGAAC 61.655 63.158 0.00 0.00 43.89 3.18
149 150 1.660575 CAACGGTCGTCGCTGAACT 60.661 57.895 0.00 0.00 43.89 3.01
150 151 1.660575 AACGGTCGTCGCTGAACTG 60.661 57.895 0.00 0.00 43.89 3.16
151 152 2.067091 AACGGTCGTCGCTGAACTGA 62.067 55.000 0.00 0.00 43.89 3.41
152 153 1.154016 CGGTCGTCGCTGAACTGAT 60.154 57.895 0.00 0.00 0.00 2.90
153 154 1.406219 CGGTCGTCGCTGAACTGATG 61.406 60.000 0.00 0.00 0.00 3.07
154 155 1.687494 GGTCGTCGCTGAACTGATGC 61.687 60.000 0.00 0.00 0.00 3.91
155 156 0.734253 GTCGTCGCTGAACTGATGCT 60.734 55.000 0.00 0.00 0.00 3.79
156 157 0.038251 TCGTCGCTGAACTGATGCTT 60.038 50.000 0.00 0.00 0.00 3.91
157 158 0.094216 CGTCGCTGAACTGATGCTTG 59.906 55.000 0.00 0.00 0.00 4.01
158 159 0.179205 GTCGCTGAACTGATGCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
159 160 0.321034 TCGCTGAACTGATGCTTGCT 60.321 50.000 0.00 0.00 0.00 3.91
160 161 0.179197 CGCTGAACTGATGCTTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
161 162 0.879765 GCTGAACTGATGCTTGCTGT 59.120 50.000 0.00 0.00 0.00 4.40
162 163 1.401148 GCTGAACTGATGCTTGCTGTG 60.401 52.381 0.00 0.00 0.00 3.66
163 164 1.878088 CTGAACTGATGCTTGCTGTGT 59.122 47.619 0.00 0.00 0.00 3.72
164 165 1.875514 TGAACTGATGCTTGCTGTGTC 59.124 47.619 0.00 0.00 0.00 3.67
165 166 1.875514 GAACTGATGCTTGCTGTGTCA 59.124 47.619 0.00 0.00 0.00 3.58
166 167 2.195741 ACTGATGCTTGCTGTGTCAT 57.804 45.000 0.00 0.00 0.00 3.06
167 168 3.339253 ACTGATGCTTGCTGTGTCATA 57.661 42.857 0.00 0.00 0.00 2.15
168 169 3.268330 ACTGATGCTTGCTGTGTCATAG 58.732 45.455 0.00 0.00 0.00 2.23
169 170 3.268330 CTGATGCTTGCTGTGTCATAGT 58.732 45.455 0.00 0.00 0.00 2.12
170 171 3.004862 TGATGCTTGCTGTGTCATAGTG 58.995 45.455 0.00 0.00 0.00 2.74
171 172 2.837532 TGCTTGCTGTGTCATAGTGA 57.162 45.000 0.00 0.00 0.00 3.41
182 183 3.914555 GTCATAGTGACTGCGTCAATG 57.085 47.619 17.52 15.02 44.49 2.82
183 184 2.029728 GTCATAGTGACTGCGTCAATGC 59.970 50.000 17.52 9.87 44.49 3.56
184 185 2.094026 TCATAGTGACTGCGTCAATGCT 60.094 45.455 17.52 11.44 44.49 3.79
185 186 1.713597 TAGTGACTGCGTCAATGCTG 58.286 50.000 17.52 0.15 44.49 4.41
186 187 0.952497 AGTGACTGCGTCAATGCTGG 60.952 55.000 11.92 0.00 44.49 4.85
187 188 1.672030 TGACTGCGTCAATGCTGGG 60.672 57.895 8.59 0.00 39.78 4.45
188 189 3.044059 GACTGCGTCAATGCTGGGC 62.044 63.158 6.13 0.00 38.04 5.36
189 190 2.749044 CTGCGTCAATGCTGGGCT 60.749 61.111 0.00 0.00 35.36 5.19
190 191 3.047718 CTGCGTCAATGCTGGGCTG 62.048 63.158 0.00 0.00 35.36 4.85
191 192 4.487412 GCGTCAATGCTGGGCTGC 62.487 66.667 0.00 0.00 0.00 5.25
192 193 3.818787 CGTCAATGCTGGGCTGCC 61.819 66.667 11.05 11.05 0.00 4.85
193 194 2.362120 GTCAATGCTGGGCTGCCT 60.362 61.111 19.68 0.00 0.00 4.75
194 195 1.980772 GTCAATGCTGGGCTGCCTT 60.981 57.895 19.68 0.87 0.00 4.35
195 196 1.679977 TCAATGCTGGGCTGCCTTC 60.680 57.895 19.68 8.41 0.00 3.46
196 197 2.753043 AATGCTGGGCTGCCTTCG 60.753 61.111 19.68 8.25 0.00 3.79
197 198 4.809496 ATGCTGGGCTGCCTTCGG 62.809 66.667 19.68 9.02 0.00 4.30
200 201 3.710722 CTGGGCTGCCTTCGGAGT 61.711 66.667 19.68 0.00 0.00 3.85
201 202 2.284331 TGGGCTGCCTTCGGAGTA 60.284 61.111 19.68 0.00 0.00 2.59
202 203 1.899437 CTGGGCTGCCTTCGGAGTAA 61.899 60.000 19.68 0.00 0.00 2.24
203 204 1.271840 TGGGCTGCCTTCGGAGTAAT 61.272 55.000 19.68 0.00 0.00 1.89
204 205 0.815615 GGGCTGCCTTCGGAGTAATG 60.816 60.000 19.68 0.00 0.00 1.90
205 206 1.440145 GGCTGCCTTCGGAGTAATGC 61.440 60.000 12.43 0.00 0.00 3.56
206 207 0.462759 GCTGCCTTCGGAGTAATGCT 60.463 55.000 0.00 0.00 0.00 3.79
207 208 1.202533 GCTGCCTTCGGAGTAATGCTA 60.203 52.381 0.00 0.00 0.00 3.49
208 209 2.748605 CTGCCTTCGGAGTAATGCTAG 58.251 52.381 0.00 0.00 0.00 3.42
209 210 2.362397 CTGCCTTCGGAGTAATGCTAGA 59.638 50.000 0.00 0.00 0.00 2.43
210 211 2.100916 TGCCTTCGGAGTAATGCTAGAC 59.899 50.000 0.00 0.00 0.00 2.59
211 212 2.362717 GCCTTCGGAGTAATGCTAGACT 59.637 50.000 0.00 0.00 0.00 3.24
212 213 3.181474 GCCTTCGGAGTAATGCTAGACTT 60.181 47.826 0.00 0.00 0.00 3.01
213 214 4.037684 GCCTTCGGAGTAATGCTAGACTTA 59.962 45.833 0.00 0.00 0.00 2.24
214 215 5.521544 CCTTCGGAGTAATGCTAGACTTAC 58.478 45.833 0.00 0.26 0.00 2.34
215 216 4.808077 TCGGAGTAATGCTAGACTTACG 57.192 45.455 0.00 0.00 33.93 3.18
216 217 4.194640 TCGGAGTAATGCTAGACTTACGT 58.805 43.478 0.00 0.00 33.93 3.57
217 218 5.359756 TCGGAGTAATGCTAGACTTACGTA 58.640 41.667 0.00 0.00 33.93 3.57
218 219 5.817296 TCGGAGTAATGCTAGACTTACGTAA 59.183 40.000 7.94 7.94 33.93 3.18
220 221 6.018425 CGGAGTAATGCTAGACTTACGTAAGA 60.018 42.308 35.60 16.76 43.62 2.10
221 222 7.307870 CGGAGTAATGCTAGACTTACGTAAGAT 60.308 40.741 35.60 25.65 43.62 2.40
222 223 8.351461 GGAGTAATGCTAGACTTACGTAAGATT 58.649 37.037 35.60 25.11 43.62 2.40
278 279 9.773328 ACTTACAAGTTTTACGTAAAAGGAAAC 57.227 29.630 28.88 19.29 35.21 2.78
279 280 8.819152 TTACAAGTTTTACGTAAAAGGAAACG 57.181 30.769 28.88 17.66 44.47 3.60
287 288 3.795659 CGTAAAAGGAAACGTGAAGAGC 58.204 45.455 0.00 0.00 34.48 4.09
288 289 3.493503 CGTAAAAGGAAACGTGAAGAGCT 59.506 43.478 0.00 0.00 34.48 4.09
289 290 3.971032 AAAAGGAAACGTGAAGAGCTG 57.029 42.857 0.00 0.00 0.00 4.24
290 291 2.622064 AAGGAAACGTGAAGAGCTGT 57.378 45.000 0.00 0.00 0.00 4.40
291 292 1.871080 AGGAAACGTGAAGAGCTGTG 58.129 50.000 0.00 0.00 0.00 3.66
292 293 1.412710 AGGAAACGTGAAGAGCTGTGA 59.587 47.619 0.00 0.00 0.00 3.58
293 294 2.037772 AGGAAACGTGAAGAGCTGTGAT 59.962 45.455 0.00 0.00 0.00 3.06
294 295 2.808543 GGAAACGTGAAGAGCTGTGATT 59.191 45.455 0.00 0.00 0.00 2.57
295 296 3.364366 GGAAACGTGAAGAGCTGTGATTG 60.364 47.826 0.00 0.00 0.00 2.67
296 297 1.800805 ACGTGAAGAGCTGTGATTGG 58.199 50.000 0.00 0.00 0.00 3.16
297 298 1.344438 ACGTGAAGAGCTGTGATTGGA 59.656 47.619 0.00 0.00 0.00 3.53
298 299 1.998315 CGTGAAGAGCTGTGATTGGAG 59.002 52.381 0.00 0.00 0.00 3.86
299 300 2.353109 CGTGAAGAGCTGTGATTGGAGA 60.353 50.000 0.00 0.00 0.00 3.71
300 301 3.260740 GTGAAGAGCTGTGATTGGAGAG 58.739 50.000 0.00 0.00 0.00 3.20
301 302 3.056250 GTGAAGAGCTGTGATTGGAGAGA 60.056 47.826 0.00 0.00 0.00 3.10
302 303 3.773667 TGAAGAGCTGTGATTGGAGAGAT 59.226 43.478 0.00 0.00 0.00 2.75
303 304 4.958581 TGAAGAGCTGTGATTGGAGAGATA 59.041 41.667 0.00 0.00 0.00 1.98
304 305 5.068855 TGAAGAGCTGTGATTGGAGAGATAG 59.931 44.000 0.00 0.00 0.00 2.08
305 306 3.896888 AGAGCTGTGATTGGAGAGATAGG 59.103 47.826 0.00 0.00 0.00 2.57
306 307 2.971330 AGCTGTGATTGGAGAGATAGGG 59.029 50.000 0.00 0.00 0.00 3.53
307 308 2.038295 GCTGTGATTGGAGAGATAGGGG 59.962 54.545 0.00 0.00 0.00 4.79
308 309 2.636893 CTGTGATTGGAGAGATAGGGGG 59.363 54.545 0.00 0.00 0.00 5.40
309 310 2.250008 TGTGATTGGAGAGATAGGGGGA 59.750 50.000 0.00 0.00 0.00 4.81
310 311 2.903135 GTGATTGGAGAGATAGGGGGAG 59.097 54.545 0.00 0.00 0.00 4.30
311 312 2.158097 TGATTGGAGAGATAGGGGGAGG 60.158 54.545 0.00 0.00 0.00 4.30
312 313 1.632769 TTGGAGAGATAGGGGGAGGA 58.367 55.000 0.00 0.00 0.00 3.71
313 314 1.632769 TGGAGAGATAGGGGGAGGAA 58.367 55.000 0.00 0.00 0.00 3.36
314 315 1.505538 TGGAGAGATAGGGGGAGGAAG 59.494 57.143 0.00 0.00 0.00 3.46
315 316 1.203250 GGAGAGATAGGGGGAGGAAGG 60.203 61.905 0.00 0.00 0.00 3.46
316 317 0.871024 AGAGATAGGGGGAGGAAGGG 59.129 60.000 0.00 0.00 0.00 3.95
317 318 0.178888 GAGATAGGGGGAGGAAGGGG 60.179 65.000 0.00 0.00 0.00 4.79
318 319 1.848431 GATAGGGGGAGGAAGGGGC 60.848 68.421 0.00 0.00 0.00 5.80
319 320 2.348172 GATAGGGGGAGGAAGGGGCT 62.348 65.000 0.00 0.00 0.00 5.19
320 321 2.348172 ATAGGGGGAGGAAGGGGCTC 62.348 65.000 0.00 0.00 0.00 4.70
321 322 4.760220 GGGGGAGGAAGGGGCTCA 62.760 72.222 0.00 0.00 0.00 4.26
322 323 3.412408 GGGGAGGAAGGGGCTCAC 61.412 72.222 0.00 0.00 0.00 3.51
323 324 3.412408 GGGAGGAAGGGGCTCACC 61.412 72.222 0.00 0.00 39.11 4.02
335 336 1.828979 GGCTCACCCCGTAAAAATCA 58.171 50.000 0.00 0.00 0.00 2.57
336 337 2.375146 GGCTCACCCCGTAAAAATCAT 58.625 47.619 0.00 0.00 0.00 2.45
337 338 2.099098 GGCTCACCCCGTAAAAATCATG 59.901 50.000 0.00 0.00 0.00 3.07
338 339 2.099098 GCTCACCCCGTAAAAATCATGG 59.901 50.000 0.00 0.00 0.00 3.66
339 340 2.687935 CTCACCCCGTAAAAATCATGGG 59.312 50.000 0.00 0.00 41.32 4.00
343 344 2.306847 CCCGTAAAAATCATGGGGAGG 58.693 52.381 0.00 0.00 38.41 4.30
344 345 2.357777 CCCGTAAAAATCATGGGGAGGT 60.358 50.000 0.00 0.00 38.41 3.85
345 346 3.361786 CCGTAAAAATCATGGGGAGGTT 58.638 45.455 0.00 0.00 0.00 3.50
346 347 3.767131 CCGTAAAAATCATGGGGAGGTTT 59.233 43.478 0.00 0.00 0.00 3.27
347 348 4.951094 CCGTAAAAATCATGGGGAGGTTTA 59.049 41.667 0.00 0.00 0.00 2.01
348 349 5.067283 CCGTAAAAATCATGGGGAGGTTTAG 59.933 44.000 0.00 0.00 0.00 1.85
349 350 5.650703 CGTAAAAATCATGGGGAGGTTTAGT 59.349 40.000 0.00 0.00 0.00 2.24
350 351 6.152154 CGTAAAAATCATGGGGAGGTTTAGTT 59.848 38.462 0.00 0.00 0.00 2.24
351 352 7.337436 CGTAAAAATCATGGGGAGGTTTAGTTA 59.663 37.037 0.00 0.00 0.00 2.24
352 353 7.718334 AAAAATCATGGGGAGGTTTAGTTAG 57.282 36.000 0.00 0.00 0.00 2.34
353 354 5.388599 AATCATGGGGAGGTTTAGTTAGG 57.611 43.478 0.00 0.00 0.00 2.69
354 355 4.083080 TCATGGGGAGGTTTAGTTAGGA 57.917 45.455 0.00 0.00 0.00 2.94
355 356 4.440808 TCATGGGGAGGTTTAGTTAGGAA 58.559 43.478 0.00 0.00 0.00 3.36
356 357 4.473559 TCATGGGGAGGTTTAGTTAGGAAG 59.526 45.833 0.00 0.00 0.00 3.46
357 358 3.878086 TGGGGAGGTTTAGTTAGGAAGT 58.122 45.455 0.00 0.00 0.00 3.01
358 359 4.245308 TGGGGAGGTTTAGTTAGGAAGTT 58.755 43.478 0.00 0.00 0.00 2.66
359 360 4.287845 TGGGGAGGTTTAGTTAGGAAGTTC 59.712 45.833 0.00 0.00 0.00 3.01
360 361 4.287845 GGGGAGGTTTAGTTAGGAAGTTCA 59.712 45.833 5.01 0.00 0.00 3.18
361 362 5.489249 GGGAGGTTTAGTTAGGAAGTTCAG 58.511 45.833 5.01 0.00 0.00 3.02
362 363 5.489249 GGAGGTTTAGTTAGGAAGTTCAGG 58.511 45.833 5.01 0.00 0.00 3.86
363 364 5.012871 GGAGGTTTAGTTAGGAAGTTCAGGT 59.987 44.000 5.01 0.00 0.00 4.00
364 365 6.212187 GGAGGTTTAGTTAGGAAGTTCAGGTA 59.788 42.308 5.01 0.00 0.00 3.08
365 366 7.256439 GGAGGTTTAGTTAGGAAGTTCAGGTAA 60.256 40.741 5.01 0.00 0.00 2.85
366 367 7.677892 AGGTTTAGTTAGGAAGTTCAGGTAAG 58.322 38.462 5.01 0.00 0.00 2.34
367 368 7.291885 AGGTTTAGTTAGGAAGTTCAGGTAAGT 59.708 37.037 5.01 5.13 0.00 2.24
368 369 7.935755 GGTTTAGTTAGGAAGTTCAGGTAAGTT 59.064 37.037 5.01 0.00 33.25 2.66
369 370 9.334947 GTTTAGTTAGGAAGTTCAGGTAAGTTT 57.665 33.333 5.01 0.00 30.60 2.66
370 371 9.910267 TTTAGTTAGGAAGTTCAGGTAAGTTTT 57.090 29.630 5.01 0.00 30.60 2.43
371 372 9.910267 TTAGTTAGGAAGTTCAGGTAAGTTTTT 57.090 29.630 5.01 0.00 30.60 1.94
410 411 9.967346 TTAGGTAAGTTTGAGAGATGATTATCG 57.033 33.333 0.00 0.00 38.38 2.92
411 412 6.926272 AGGTAAGTTTGAGAGATGATTATCGC 59.074 38.462 0.00 0.00 38.38 4.58
412 413 6.926272 GGTAAGTTTGAGAGATGATTATCGCT 59.074 38.462 3.33 3.33 44.68 4.93
413 414 6.841443 AAGTTTGAGAGATGATTATCGCTG 57.159 37.500 8.46 0.00 42.50 5.18
414 415 4.749099 AGTTTGAGAGATGATTATCGCTGC 59.251 41.667 8.46 2.07 42.50 5.25
415 416 3.309961 TGAGAGATGATTATCGCTGCC 57.690 47.619 8.46 0.00 42.50 4.85
416 417 2.028658 TGAGAGATGATTATCGCTGCCC 60.029 50.000 8.46 0.00 42.50 5.36
417 418 2.233431 GAGAGATGATTATCGCTGCCCT 59.767 50.000 8.46 0.00 42.50 5.19
418 419 2.028294 AGAGATGATTATCGCTGCCCTG 60.028 50.000 2.88 0.00 41.17 4.45
419 420 1.002888 AGATGATTATCGCTGCCCTGG 59.997 52.381 0.00 0.00 38.38 4.45
420 421 0.767375 ATGATTATCGCTGCCCTGGT 59.233 50.000 0.00 0.00 0.00 4.00
421 422 0.546122 TGATTATCGCTGCCCTGGTT 59.454 50.000 0.00 0.00 0.00 3.67
443 444 2.258591 CGCACTACTGACCTGCGT 59.741 61.111 3.17 0.00 46.78 5.24
458 459 4.616953 ACCTGCGTTAAGTGGAAATTTTG 58.383 39.130 0.00 0.00 0.00 2.44
462 463 3.738791 GCGTTAAGTGGAAATTTTGTGGG 59.261 43.478 0.00 0.00 0.00 4.61
579 580 2.979676 CCACGCACCACACTGCAT 60.980 61.111 0.00 0.00 36.94 3.96
869 873 2.363359 CCTTTTTGGAGCTCTGCTTGTT 59.637 45.455 14.64 0.00 39.88 2.83
909 913 5.243981 ACAGTTGAGATCTCTCCACAATTG 58.756 41.667 22.95 16.79 40.08 2.32
974 978 5.751028 CCTCCTCTTTCTGCTATAAAACTCG 59.249 44.000 0.00 0.00 0.00 4.18
1080 1108 0.896923 TTCCATCTTGCAACATGGCC 59.103 50.000 24.48 0.00 39.69 5.36
1135 1163 0.324830 ACCTCCCTTTCCTCCTCTCG 60.325 60.000 0.00 0.00 0.00 4.04
1159 1187 0.783850 AGGCCTACAACCCCAACAAT 59.216 50.000 1.29 0.00 0.00 2.71
1167 1195 0.106419 AACCCCAACAATGTCACGGT 60.106 50.000 0.00 0.00 0.00 4.83
1172 1200 1.542328 CCAACAATGTCACGGTCCTGA 60.542 52.381 0.00 0.00 0.00 3.86
1420 1448 1.227823 CCACAACAACCTCAGCGGA 60.228 57.895 0.00 0.00 36.31 5.54
1612 1640 1.649664 GCAGCAATGTCGATCTCTGT 58.350 50.000 0.00 0.00 0.00 3.41
1661 1689 4.842574 TGCTTACAATGCAGTGGAAGATA 58.157 39.130 36.55 23.44 41.34 1.98
1718 1749 4.588899 TCCTACTGCAGCAACAAATACAT 58.411 39.130 15.27 0.00 0.00 2.29
1720 1751 3.476295 ACTGCAGCAACAAATACATCG 57.524 42.857 15.27 0.00 0.00 3.84
1774 1805 0.321919 TCAGTCAGCTTGGCATGACC 60.322 55.000 14.39 0.00 45.61 4.02
1879 1910 1.557371 AGAAAGCTGAGGCCCTCTAAC 59.443 52.381 12.94 1.13 39.73 2.34
1901 1932 1.086696 CGATTCCAAATCCAGTGCGT 58.913 50.000 0.00 0.00 0.00 5.24
1921 1952 2.028930 GTCTCTTTGCTTCGAGGAGGAA 60.029 50.000 0.00 0.00 0.00 3.36
1933 1964 2.100584 CGAGGAGGAAGACAAGATCAGG 59.899 54.545 0.00 0.00 0.00 3.86
1945 1976 3.260380 ACAAGATCAGGAGTGGTGAAGAG 59.740 47.826 0.00 0.00 0.00 2.85
2068 2099 2.436115 GGGAGCACGTACAAGGCC 60.436 66.667 0.00 0.00 0.00 5.19
2337 2368 2.676076 GTGAATTTTCAATGGCGCTGT 58.324 42.857 7.64 0.00 39.21 4.40
2343 2377 2.401583 TTCAATGGCGCTGTACATCT 57.598 45.000 7.64 0.00 0.00 2.90
2441 2476 1.201429 AGAAGGGCATCCTGTTCGGT 61.201 55.000 0.00 0.00 44.07 4.69
2914 2949 3.774066 TGATGAGCGAGTTCATGTAGTG 58.226 45.455 7.15 0.00 37.90 2.74
2918 2953 4.377021 TGAGCGAGTTCATGTAGTGTTTT 58.623 39.130 0.00 0.00 0.00 2.43
2921 2956 3.058914 GCGAGTTCATGTAGTGTTTTGCT 60.059 43.478 0.00 0.00 0.00 3.91
2929 2967 4.145365 TGTAGTGTTTTGCTGGTGTAGT 57.855 40.909 0.00 0.00 0.00 2.73
2946 2984 3.985279 TGTAGTGTCACGGAATTTCTTCG 59.015 43.478 0.00 0.00 31.75 3.79
2947 2985 3.380479 AGTGTCACGGAATTTCTTCGA 57.620 42.857 0.00 0.00 31.75 3.71
3037 3149 4.468153 ACAAAGCCTTTAGTCCCAAACAAA 59.532 37.500 0.00 0.00 0.00 2.83
3040 3152 6.987403 AAGCCTTTAGTCCCAAACAAATTA 57.013 33.333 0.00 0.00 0.00 1.40
3043 3155 5.479027 GCCTTTAGTCCCAAACAAATTAGGA 59.521 40.000 0.00 0.00 0.00 2.94
3047 3159 9.681062 CTTTAGTCCCAAACAAATTAGGATAGA 57.319 33.333 0.00 0.00 0.00 1.98
3053 3165 9.053472 TCCCAAACAAATTAGGATAGACTAGAA 57.947 33.333 0.00 0.00 0.00 2.10
3054 3166 9.681062 CCCAAACAAATTAGGATAGACTAGAAA 57.319 33.333 0.00 0.00 0.00 2.52
3087 3199 2.768253 ATCTCGCAACCAACTCATGA 57.232 45.000 0.00 0.00 0.00 3.07
3091 3205 1.069978 TCGCAACCAACTCATGACTGA 59.930 47.619 0.00 0.00 0.00 3.41
3094 3208 2.816087 GCAACCAACTCATGACTGACAT 59.184 45.455 0.00 0.00 40.17 3.06
3117 3231 2.025981 TGGATAGCAAGCTTCCACACAT 60.026 45.455 16.61 0.00 34.65 3.21
3129 3243 2.556766 TCCACACATCCCTGTCCATAA 58.443 47.619 0.00 0.00 31.62 1.90
3149 3263 7.125811 TCCATAACTAGCTCTTTGGTGATACTT 59.874 37.037 0.00 0.00 0.00 2.24
3173 3287 5.780282 TCAATCCTTCAGGTCTCTCTTAACA 59.220 40.000 0.00 0.00 36.34 2.41
3185 3299 3.432378 TCTCTTAACAGACTCCTCCCAC 58.568 50.000 0.00 0.00 0.00 4.61
3231 3345 2.283780 CTTGACATTCTCCGCACGCG 62.284 60.000 3.53 3.53 39.44 6.01
3319 3433 3.416156 GATGTTGGACAAGCTTCTCCTT 58.584 45.455 19.96 4.48 0.00 3.36
3371 3485 4.970860 ATCATCATTCCGGACTTGATCT 57.029 40.909 20.98 11.92 0.00 2.75
3374 3488 5.500234 TCATCATTCCGGACTTGATCTTTT 58.500 37.500 20.98 4.09 0.00 2.27
3416 3530 0.459899 TCAACATACGCATCTCCGCT 59.540 50.000 0.00 0.00 0.00 5.52
3418 3532 2.296190 TCAACATACGCATCTCCGCTAT 59.704 45.455 0.00 0.00 0.00 2.97
3581 3695 2.421388 CCACTTCATCCATCCGGCTTTA 60.421 50.000 0.00 0.00 0.00 1.85
3622 3736 3.145861 TCATCAATACCCCCATCCTCCTA 59.854 47.826 0.00 0.00 0.00 2.94
3645 3759 2.718563 ACATTGACCCCAAATACCGAC 58.281 47.619 0.00 0.00 35.67 4.79
3892 4006 5.036916 TCCTTGTATATCCCTTGTGACCTT 58.963 41.667 0.00 0.00 0.00 3.50
3965 4079 5.536916 CAGTCCTATCTTAATCGGGAAGTCT 59.463 44.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.892852 TCAAAACATGGGCCTTCTTCAG 59.107 45.455 4.53 0.00 0.00 3.02
1 2 2.892852 CTCAAAACATGGGCCTTCTTCA 59.107 45.455 4.53 0.00 0.00 3.02
2 3 2.232208 CCTCAAAACATGGGCCTTCTTC 59.768 50.000 4.53 0.00 0.00 2.87
3 4 2.250924 CCTCAAAACATGGGCCTTCTT 58.749 47.619 4.53 0.00 0.00 2.52
4 5 1.550869 CCCTCAAAACATGGGCCTTCT 60.551 52.381 4.53 0.00 33.88 2.85
5 6 0.897621 CCCTCAAAACATGGGCCTTC 59.102 55.000 4.53 0.00 33.88 3.46
6 7 0.486879 TCCCTCAAAACATGGGCCTT 59.513 50.000 4.53 0.00 40.69 4.35
7 8 0.712380 ATCCCTCAAAACATGGGCCT 59.288 50.000 4.53 0.00 40.69 5.19
8 9 2.031870 GTATCCCTCAAAACATGGGCC 58.968 52.381 0.00 0.00 40.69 5.80
9 10 2.031870 GGTATCCCTCAAAACATGGGC 58.968 52.381 0.00 0.00 40.69 5.36
10 11 2.024464 TGGGTATCCCTCAAAACATGGG 60.024 50.000 6.38 0.00 45.70 4.00
11 12 3.023832 GTGGGTATCCCTCAAAACATGG 58.976 50.000 6.38 0.00 45.70 3.66
12 13 2.682856 CGTGGGTATCCCTCAAAACATG 59.317 50.000 6.38 0.00 45.70 3.21
13 14 2.574369 TCGTGGGTATCCCTCAAAACAT 59.426 45.455 6.38 0.00 45.70 2.71
14 15 1.979308 TCGTGGGTATCCCTCAAAACA 59.021 47.619 6.38 0.00 45.70 2.83
15 16 2.289819 TGTCGTGGGTATCCCTCAAAAC 60.290 50.000 6.38 2.77 45.70 2.43
16 17 1.979308 TGTCGTGGGTATCCCTCAAAA 59.021 47.619 6.38 0.00 45.70 2.44
17 18 1.646912 TGTCGTGGGTATCCCTCAAA 58.353 50.000 6.38 0.00 45.70 2.69
18 19 1.484653 CATGTCGTGGGTATCCCTCAA 59.515 52.381 6.38 0.00 45.70 3.02
19 20 1.119684 CATGTCGTGGGTATCCCTCA 58.880 55.000 6.38 1.79 45.70 3.86
20 21 0.393077 CCATGTCGTGGGTATCCCTC 59.607 60.000 2.78 1.82 45.70 4.30
21 22 2.528134 CCATGTCGTGGGTATCCCT 58.472 57.895 2.78 0.00 45.70 4.20
30 31 2.034879 GCTGGTCCACCATGTCGTG 61.035 63.158 0.00 0.00 46.46 4.35
31 32 2.347490 GCTGGTCCACCATGTCGT 59.653 61.111 0.00 0.00 46.46 4.34
32 33 2.815211 CGCTGGTCCACCATGTCG 60.815 66.667 0.00 0.28 46.46 4.35
33 34 2.436646 CCGCTGGTCCACCATGTC 60.437 66.667 0.00 0.00 46.46 3.06
34 35 2.469465 CTTCCGCTGGTCCACCATGT 62.469 60.000 0.00 0.00 46.46 3.21
35 36 1.746615 CTTCCGCTGGTCCACCATG 60.747 63.158 0.00 0.00 46.46 3.66
36 37 1.903877 CTCTTCCGCTGGTCCACCAT 61.904 60.000 0.00 0.00 46.46 3.55
37 38 2.525629 TCTTCCGCTGGTCCACCA 60.526 61.111 0.00 0.00 45.30 4.17
38 39 2.266055 CTCTTCCGCTGGTCCACC 59.734 66.667 0.00 0.00 0.00 4.61
39 40 2.435059 GCTCTTCCGCTGGTCCAC 60.435 66.667 0.00 0.00 0.00 4.02
40 41 3.706373 GGCTCTTCCGCTGGTCCA 61.706 66.667 0.00 0.00 0.00 4.02
49 50 2.245438 CTCCCCAAGTCGGCTCTTCC 62.245 65.000 0.00 0.00 0.00 3.46
50 51 1.219393 CTCCCCAAGTCGGCTCTTC 59.781 63.158 0.00 0.00 0.00 2.87
51 52 2.294078 CCTCCCCAAGTCGGCTCTT 61.294 63.158 0.00 0.00 0.00 2.85
52 53 2.685380 CCTCCCCAAGTCGGCTCT 60.685 66.667 0.00 0.00 0.00 4.09
53 54 3.003763 ACCTCCCCAAGTCGGCTC 61.004 66.667 0.00 0.00 0.00 4.70
54 55 3.003763 GACCTCCCCAAGTCGGCT 61.004 66.667 0.00 0.00 0.00 5.52
55 56 3.316573 CTGACCTCCCCAAGTCGGC 62.317 68.421 0.00 0.00 35.71 5.54
56 57 1.609501 TCTGACCTCCCCAAGTCGG 60.610 63.158 0.00 0.00 40.16 4.79
57 58 1.592223 GTCTGACCTCCCCAAGTCG 59.408 63.158 0.00 0.00 35.71 4.18
58 59 1.889530 CGGTCTGACCTCCCCAAGTC 61.890 65.000 23.49 0.00 35.66 3.01
59 60 1.913762 CGGTCTGACCTCCCCAAGT 60.914 63.158 23.49 0.00 35.66 3.16
60 61 2.660064 CCGGTCTGACCTCCCCAAG 61.660 68.421 23.49 6.93 35.66 3.61
61 62 2.606519 CCGGTCTGACCTCCCCAA 60.607 66.667 23.49 0.00 35.66 4.12
62 63 3.923645 ACCGGTCTGACCTCCCCA 61.924 66.667 23.49 0.00 35.66 4.96
63 64 3.391382 CACCGGTCTGACCTCCCC 61.391 72.222 23.49 0.00 35.66 4.81
64 65 2.283676 TCACCGGTCTGACCTCCC 60.284 66.667 23.49 0.00 35.66 4.30
65 66 2.352032 CCTCACCGGTCTGACCTCC 61.352 68.421 23.49 0.00 35.66 4.30
66 67 1.606889 ACCTCACCGGTCTGACCTC 60.607 63.158 23.49 0.00 44.93 3.85
67 68 1.908793 CACCTCACCGGTCTGACCT 60.909 63.158 23.49 3.96 44.93 3.85
68 69 2.657237 CACCTCACCGGTCTGACC 59.343 66.667 16.99 16.99 44.93 4.02
69 70 2.657237 CCACCTCACCGGTCTGAC 59.343 66.667 2.59 0.00 44.93 3.51
70 71 3.311110 GCCACCTCACCGGTCTGA 61.311 66.667 2.59 0.00 44.93 3.27
71 72 4.742201 CGCCACCTCACCGGTCTG 62.742 72.222 2.59 0.00 44.93 3.51
78 79 4.394712 CTCCCCACGCCACCTCAC 62.395 72.222 0.00 0.00 0.00 3.51
79 80 4.631740 TCTCCCCACGCCACCTCA 62.632 66.667 0.00 0.00 0.00 3.86
80 81 2.804828 CTTTCTCCCCACGCCACCTC 62.805 65.000 0.00 0.00 0.00 3.85
81 82 2.852075 TTTCTCCCCACGCCACCT 60.852 61.111 0.00 0.00 0.00 4.00
82 83 2.359975 CTTTCTCCCCACGCCACC 60.360 66.667 0.00 0.00 0.00 4.61
83 84 1.072505 TTCTTTCTCCCCACGCCAC 59.927 57.895 0.00 0.00 0.00 5.01
84 85 1.072505 GTTCTTTCTCCCCACGCCA 59.927 57.895 0.00 0.00 0.00 5.69
85 86 1.674651 GGTTCTTTCTCCCCACGCC 60.675 63.158 0.00 0.00 0.00 5.68
86 87 1.674651 GGGTTCTTTCTCCCCACGC 60.675 63.158 0.00 0.00 38.37 5.34
87 88 1.375523 CGGGTTCTTTCTCCCCACG 60.376 63.158 0.00 0.00 40.54 4.94
88 89 0.399075 TTCGGGTTCTTTCTCCCCAC 59.601 55.000 0.00 0.00 40.54 4.61
89 90 0.690762 CTTCGGGTTCTTTCTCCCCA 59.309 55.000 0.00 0.00 40.54 4.96
90 91 0.691332 ACTTCGGGTTCTTTCTCCCC 59.309 55.000 0.00 0.00 40.54 4.81
91 92 1.610886 CCACTTCGGGTTCTTTCTCCC 60.611 57.143 0.00 0.00 40.26 4.30
92 93 1.809684 CCACTTCGGGTTCTTTCTCC 58.190 55.000 0.00 0.00 0.00 3.71
93 94 1.157585 GCCACTTCGGGTTCTTTCTC 58.842 55.000 0.00 0.00 34.06 2.87
94 95 0.472471 TGCCACTTCGGGTTCTTTCT 59.528 50.000 0.00 0.00 34.06 2.52
95 96 0.875059 CTGCCACTTCGGGTTCTTTC 59.125 55.000 0.00 0.00 34.06 2.62
96 97 1.172812 GCTGCCACTTCGGGTTCTTT 61.173 55.000 0.00 0.00 34.06 2.52
97 98 1.600916 GCTGCCACTTCGGGTTCTT 60.601 57.895 0.00 0.00 34.06 2.52
98 99 2.032681 GCTGCCACTTCGGGTTCT 59.967 61.111 0.00 0.00 34.06 3.01
99 100 3.056328 GGCTGCCACTTCGGGTTC 61.056 66.667 15.17 0.00 34.06 3.62
100 101 4.660938 GGGCTGCCACTTCGGGTT 62.661 66.667 22.05 0.00 34.06 4.11
102 103 4.351054 AAGGGCTGCCACTTCGGG 62.351 66.667 22.05 0.00 34.06 5.14
103 104 3.058160 CAAGGGCTGCCACTTCGG 61.058 66.667 22.05 6.89 38.11 4.30
104 105 3.058160 CCAAGGGCTGCCACTTCG 61.058 66.667 22.05 10.17 0.00 3.79
105 106 2.677875 CCCAAGGGCTGCCACTTC 60.678 66.667 22.05 2.38 0.00 3.01
106 107 2.603933 AAACCCAAGGGCTGCCACTT 62.604 55.000 22.05 17.52 39.32 3.16
107 108 3.086764 AAACCCAAGGGCTGCCACT 62.087 57.895 22.05 12.31 39.32 4.00
108 109 2.524148 AAACCCAAGGGCTGCCAC 60.524 61.111 22.05 10.03 39.32 5.01
109 110 2.203625 GAAACCCAAGGGCTGCCA 60.204 61.111 22.05 0.00 39.32 4.92
110 111 2.997315 GGAAACCCAAGGGCTGCC 60.997 66.667 11.05 11.05 39.32 4.85
111 112 1.607801 GATGGAAACCCAAGGGCTGC 61.608 60.000 4.70 0.00 37.24 5.25
112 113 0.972471 GGATGGAAACCCAAGGGCTG 60.972 60.000 4.70 0.00 37.24 4.85
113 114 1.388133 GGATGGAAACCCAAGGGCT 59.612 57.895 4.70 0.00 37.24 5.19
114 115 0.544120 TTGGATGGAAACCCAAGGGC 60.544 55.000 4.70 0.00 37.50 5.19
115 116 1.266178 GTTGGATGGAAACCCAAGGG 58.734 55.000 2.91 2.91 42.50 3.95
116 117 0.887933 CGTTGGATGGAAACCCAAGG 59.112 55.000 0.00 0.00 42.50 3.61
117 118 0.887933 CCGTTGGATGGAAACCCAAG 59.112 55.000 0.00 0.00 42.50 3.61
118 119 0.186386 ACCGTTGGATGGAAACCCAA 59.814 50.000 0.00 0.00 39.88 4.12
119 120 0.250989 GACCGTTGGATGGAAACCCA 60.251 55.000 0.00 0.00 38.24 4.51
120 121 1.303091 CGACCGTTGGATGGAAACCC 61.303 60.000 0.00 0.00 0.00 4.11
121 122 0.604511 ACGACCGTTGGATGGAAACC 60.605 55.000 0.00 0.00 0.00 3.27
122 123 0.794473 GACGACCGTTGGATGGAAAC 59.206 55.000 0.00 0.00 0.00 2.78
123 124 0.668096 CGACGACCGTTGGATGGAAA 60.668 55.000 2.00 0.00 0.00 3.13
124 125 1.080366 CGACGACCGTTGGATGGAA 60.080 57.895 2.00 0.00 0.00 3.53
125 126 2.569657 CGACGACCGTTGGATGGA 59.430 61.111 2.00 0.00 0.00 3.41
126 127 3.186047 GCGACGACCGTTGGATGG 61.186 66.667 11.27 0.00 41.15 3.51
127 128 2.126071 AGCGACGACCGTTGGATG 60.126 61.111 11.27 0.00 41.15 3.51
128 129 2.126071 CAGCGACGACCGTTGGAT 60.126 61.111 11.27 0.00 44.22 3.41
132 133 1.660575 CAGTTCAGCGACGACCGTT 60.661 57.895 0.00 0.00 41.15 4.44
133 134 1.863662 ATCAGTTCAGCGACGACCGT 61.864 55.000 0.00 0.00 41.15 4.83
134 135 1.154016 ATCAGTTCAGCGACGACCG 60.154 57.895 0.00 0.00 42.21 4.79
135 136 1.687494 GCATCAGTTCAGCGACGACC 61.687 60.000 0.00 0.00 0.00 4.79
136 137 0.734253 AGCATCAGTTCAGCGACGAC 60.734 55.000 0.00 0.00 0.00 4.34
137 138 0.038251 AAGCATCAGTTCAGCGACGA 60.038 50.000 0.00 0.00 0.00 4.20
138 139 0.094216 CAAGCATCAGTTCAGCGACG 59.906 55.000 0.00 0.00 0.00 5.12
139 140 0.179205 GCAAGCATCAGTTCAGCGAC 60.179 55.000 0.00 0.00 0.00 5.19
140 141 0.321034 AGCAAGCATCAGTTCAGCGA 60.321 50.000 0.00 0.00 0.00 4.93
141 142 0.179197 CAGCAAGCATCAGTTCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
142 143 0.879765 ACAGCAAGCATCAGTTCAGC 59.120 50.000 0.00 0.00 0.00 4.26
143 144 1.878088 ACACAGCAAGCATCAGTTCAG 59.122 47.619 0.00 0.00 0.00 3.02
144 145 1.875514 GACACAGCAAGCATCAGTTCA 59.124 47.619 0.00 0.00 0.00 3.18
145 146 1.875514 TGACACAGCAAGCATCAGTTC 59.124 47.619 0.00 0.00 0.00 3.01
146 147 1.971481 TGACACAGCAAGCATCAGTT 58.029 45.000 0.00 0.00 0.00 3.16
147 148 2.195741 ATGACACAGCAAGCATCAGT 57.804 45.000 0.00 0.00 0.00 3.41
148 149 3.063588 CACTATGACACAGCAAGCATCAG 59.936 47.826 0.00 0.00 0.00 2.90
149 150 3.004862 CACTATGACACAGCAAGCATCA 58.995 45.455 0.00 0.00 0.00 3.07
150 151 3.063180 GTCACTATGACACAGCAAGCATC 59.937 47.826 4.08 0.00 46.22 3.91
151 152 3.005554 GTCACTATGACACAGCAAGCAT 58.994 45.455 4.08 0.00 46.22 3.79
152 153 2.416747 GTCACTATGACACAGCAAGCA 58.583 47.619 4.08 0.00 46.22 3.91
172 173 2.749044 AGCCCAGCATTGACGCAG 60.749 61.111 0.00 0.00 0.00 5.18
173 174 3.057548 CAGCCCAGCATTGACGCA 61.058 61.111 0.00 0.00 0.00 5.24
174 175 4.487412 GCAGCCCAGCATTGACGC 62.487 66.667 0.00 0.00 0.00 5.19
175 176 3.818787 GGCAGCCCAGCATTGACG 61.819 66.667 0.00 0.00 35.83 4.35
176 177 1.941999 GAAGGCAGCCCAGCATTGAC 61.942 60.000 8.22 0.00 38.79 3.18
177 178 1.679977 GAAGGCAGCCCAGCATTGA 60.680 57.895 8.22 0.00 38.79 2.57
178 179 2.890371 GAAGGCAGCCCAGCATTG 59.110 61.111 8.22 0.00 38.79 2.82
179 180 2.753043 CGAAGGCAGCCCAGCATT 60.753 61.111 8.22 0.00 41.73 3.56
180 181 4.809496 CCGAAGGCAGCCCAGCAT 62.809 66.667 8.22 0.00 46.14 3.79
192 193 5.206299 CGTAAGTCTAGCATTACTCCGAAG 58.794 45.833 12.34 0.00 31.15 3.79
193 194 5.165911 CGTAAGTCTAGCATTACTCCGAA 57.834 43.478 12.34 0.00 31.15 4.30
194 195 4.808077 CGTAAGTCTAGCATTACTCCGA 57.192 45.455 12.34 0.00 31.15 4.55
252 253 9.773328 GTTTCCTTTTACGTAAAACTTGTAAGT 57.227 29.630 25.60 0.00 42.04 2.24
253 254 8.936936 CGTTTCCTTTTACGTAAAACTTGTAAG 58.063 33.333 25.60 15.59 32.31 2.34
254 255 8.819152 CGTTTCCTTTTACGTAAAACTTGTAA 57.181 30.769 25.60 15.08 32.31 2.41
266 267 3.493503 AGCTCTTCACGTTTCCTTTTACG 59.506 43.478 0.00 0.00 43.08 3.18
267 268 4.272748 ACAGCTCTTCACGTTTCCTTTTAC 59.727 41.667 0.00 0.00 0.00 2.01
268 269 4.272504 CACAGCTCTTCACGTTTCCTTTTA 59.727 41.667 0.00 0.00 0.00 1.52
269 270 3.065371 CACAGCTCTTCACGTTTCCTTTT 59.935 43.478 0.00 0.00 0.00 2.27
270 271 2.614057 CACAGCTCTTCACGTTTCCTTT 59.386 45.455 0.00 0.00 0.00 3.11
271 272 2.158957 TCACAGCTCTTCACGTTTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
272 273 1.412710 TCACAGCTCTTCACGTTTCCT 59.587 47.619 0.00 0.00 0.00 3.36
273 274 1.865865 TCACAGCTCTTCACGTTTCC 58.134 50.000 0.00 0.00 0.00 3.13
274 275 3.364366 CCAATCACAGCTCTTCACGTTTC 60.364 47.826 0.00 0.00 0.00 2.78
275 276 2.549754 CCAATCACAGCTCTTCACGTTT 59.450 45.455 0.00 0.00 0.00 3.60
276 277 2.146342 CCAATCACAGCTCTTCACGTT 58.854 47.619 0.00 0.00 0.00 3.99
277 278 1.344438 TCCAATCACAGCTCTTCACGT 59.656 47.619 0.00 0.00 0.00 4.49
278 279 1.998315 CTCCAATCACAGCTCTTCACG 59.002 52.381 0.00 0.00 0.00 4.35
279 280 3.056250 TCTCTCCAATCACAGCTCTTCAC 60.056 47.826 0.00 0.00 0.00 3.18
280 281 3.168292 TCTCTCCAATCACAGCTCTTCA 58.832 45.455 0.00 0.00 0.00 3.02
281 282 3.883830 TCTCTCCAATCACAGCTCTTC 57.116 47.619 0.00 0.00 0.00 2.87
282 283 4.344679 CCTATCTCTCCAATCACAGCTCTT 59.655 45.833 0.00 0.00 0.00 2.85
283 284 3.896888 CCTATCTCTCCAATCACAGCTCT 59.103 47.826 0.00 0.00 0.00 4.09
284 285 3.006752 CCCTATCTCTCCAATCACAGCTC 59.993 52.174 0.00 0.00 0.00 4.09
285 286 2.971330 CCCTATCTCTCCAATCACAGCT 59.029 50.000 0.00 0.00 0.00 4.24
286 287 2.038295 CCCCTATCTCTCCAATCACAGC 59.962 54.545 0.00 0.00 0.00 4.40
287 288 2.636893 CCCCCTATCTCTCCAATCACAG 59.363 54.545 0.00 0.00 0.00 3.66
288 289 2.250008 TCCCCCTATCTCTCCAATCACA 59.750 50.000 0.00 0.00 0.00 3.58
289 290 2.903135 CTCCCCCTATCTCTCCAATCAC 59.097 54.545 0.00 0.00 0.00 3.06
290 291 2.158097 CCTCCCCCTATCTCTCCAATCA 60.158 54.545 0.00 0.00 0.00 2.57
291 292 2.112691 TCCTCCCCCTATCTCTCCAATC 59.887 54.545 0.00 0.00 0.00 2.67
292 293 2.165112 TCCTCCCCCTATCTCTCCAAT 58.835 52.381 0.00 0.00 0.00 3.16
293 294 1.632769 TCCTCCCCCTATCTCTCCAA 58.367 55.000 0.00 0.00 0.00 3.53
294 295 1.505538 CTTCCTCCCCCTATCTCTCCA 59.494 57.143 0.00 0.00 0.00 3.86
295 296 1.203250 CCTTCCTCCCCCTATCTCTCC 60.203 61.905 0.00 0.00 0.00 3.71
296 297 1.203250 CCCTTCCTCCCCCTATCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
297 298 0.871024 CCCTTCCTCCCCCTATCTCT 59.129 60.000 0.00 0.00 0.00 3.10
298 299 0.178888 CCCCTTCCTCCCCCTATCTC 60.179 65.000 0.00 0.00 0.00 2.75
299 300 1.958330 CCCCTTCCTCCCCCTATCT 59.042 63.158 0.00 0.00 0.00 1.98
300 301 1.848431 GCCCCTTCCTCCCCCTATC 60.848 68.421 0.00 0.00 0.00 2.08
301 302 2.294291 GCCCCTTCCTCCCCCTAT 59.706 66.667 0.00 0.00 0.00 2.57
302 303 2.964632 AGCCCCTTCCTCCCCCTA 60.965 66.667 0.00 0.00 0.00 3.53
303 304 4.439901 GAGCCCCTTCCTCCCCCT 62.440 72.222 0.00 0.00 0.00 4.79
304 305 4.760220 TGAGCCCCTTCCTCCCCC 62.760 72.222 0.00 0.00 0.00 5.40
305 306 3.412408 GTGAGCCCCTTCCTCCCC 61.412 72.222 0.00 0.00 0.00 4.81
306 307 3.412408 GGTGAGCCCCTTCCTCCC 61.412 72.222 0.00 0.00 0.00 4.30
316 317 1.828979 TGATTTTTACGGGGTGAGCC 58.171 50.000 0.00 0.00 0.00 4.70
317 318 2.099098 CCATGATTTTTACGGGGTGAGC 59.901 50.000 0.00 0.00 0.00 4.26
318 319 2.687935 CCCATGATTTTTACGGGGTGAG 59.312 50.000 0.00 0.00 32.88 3.51
319 320 2.729194 CCCATGATTTTTACGGGGTGA 58.271 47.619 0.00 0.00 32.88 4.02
323 324 2.306847 CCTCCCCATGATTTTTACGGG 58.693 52.381 0.00 0.00 36.59 5.28
324 325 3.012934 ACCTCCCCATGATTTTTACGG 57.987 47.619 0.00 0.00 0.00 4.02
325 326 5.650703 ACTAAACCTCCCCATGATTTTTACG 59.349 40.000 0.00 0.00 0.00 3.18
326 327 7.476540 AACTAAACCTCCCCATGATTTTTAC 57.523 36.000 0.00 0.00 0.00 2.01
327 328 7.837187 CCTAACTAAACCTCCCCATGATTTTTA 59.163 37.037 0.00 0.00 0.00 1.52
328 329 6.667848 CCTAACTAAACCTCCCCATGATTTTT 59.332 38.462 0.00 0.00 0.00 1.94
329 330 6.011096 TCCTAACTAAACCTCCCCATGATTTT 60.011 38.462 0.00 0.00 0.00 1.82
330 331 5.494706 TCCTAACTAAACCTCCCCATGATTT 59.505 40.000 0.00 0.00 0.00 2.17
331 332 5.043762 TCCTAACTAAACCTCCCCATGATT 58.956 41.667 0.00 0.00 0.00 2.57
332 333 4.641868 TCCTAACTAAACCTCCCCATGAT 58.358 43.478 0.00 0.00 0.00 2.45
333 334 4.083080 TCCTAACTAAACCTCCCCATGA 57.917 45.455 0.00 0.00 0.00 3.07
334 335 4.227527 ACTTCCTAACTAAACCTCCCCATG 59.772 45.833 0.00 0.00 0.00 3.66
335 336 4.445564 ACTTCCTAACTAAACCTCCCCAT 58.554 43.478 0.00 0.00 0.00 4.00
336 337 3.878086 ACTTCCTAACTAAACCTCCCCA 58.122 45.455 0.00 0.00 0.00 4.96
337 338 4.287845 TGAACTTCCTAACTAAACCTCCCC 59.712 45.833 0.00 0.00 0.00 4.81
338 339 5.489249 CTGAACTTCCTAACTAAACCTCCC 58.511 45.833 0.00 0.00 0.00 4.30
339 340 5.012871 ACCTGAACTTCCTAACTAAACCTCC 59.987 44.000 0.00 0.00 0.00 4.30
340 341 6.111669 ACCTGAACTTCCTAACTAAACCTC 57.888 41.667 0.00 0.00 0.00 3.85
341 342 7.291885 ACTTACCTGAACTTCCTAACTAAACCT 59.708 37.037 0.00 0.00 0.00 3.50
342 343 7.448420 ACTTACCTGAACTTCCTAACTAAACC 58.552 38.462 0.00 0.00 0.00 3.27
343 344 8.899427 AACTTACCTGAACTTCCTAACTAAAC 57.101 34.615 0.00 0.00 0.00 2.01
344 345 9.910267 AAAACTTACCTGAACTTCCTAACTAAA 57.090 29.630 0.00 0.00 0.00 1.85
345 346 9.910267 AAAAACTTACCTGAACTTCCTAACTAA 57.090 29.630 0.00 0.00 0.00 2.24
384 385 9.967346 CGATAATCATCTCTCAAACTTACCTAA 57.033 33.333 0.00 0.00 0.00 2.69
385 386 8.082852 GCGATAATCATCTCTCAAACTTACCTA 58.917 37.037 0.00 0.00 0.00 3.08
386 387 6.926272 GCGATAATCATCTCTCAAACTTACCT 59.074 38.462 0.00 0.00 0.00 3.08
387 388 6.926272 AGCGATAATCATCTCTCAAACTTACC 59.074 38.462 0.00 0.00 0.00 2.85
388 389 7.568497 GCAGCGATAATCATCTCTCAAACTTAC 60.568 40.741 0.00 0.00 0.00 2.34
389 390 6.422100 GCAGCGATAATCATCTCTCAAACTTA 59.578 38.462 0.00 0.00 0.00 2.24
390 391 5.236047 GCAGCGATAATCATCTCTCAAACTT 59.764 40.000 0.00 0.00 0.00 2.66
391 392 4.749099 GCAGCGATAATCATCTCTCAAACT 59.251 41.667 0.00 0.00 0.00 2.66
392 393 4.084118 GGCAGCGATAATCATCTCTCAAAC 60.084 45.833 0.00 0.00 0.00 2.93
393 394 4.060900 GGCAGCGATAATCATCTCTCAAA 58.939 43.478 0.00 0.00 0.00 2.69
394 395 3.555795 GGGCAGCGATAATCATCTCTCAA 60.556 47.826 0.00 0.00 0.00 3.02
395 396 2.028658 GGGCAGCGATAATCATCTCTCA 60.029 50.000 0.00 0.00 0.00 3.27
396 397 2.233431 AGGGCAGCGATAATCATCTCTC 59.767 50.000 0.00 0.00 0.00 3.20
397 398 2.028294 CAGGGCAGCGATAATCATCTCT 60.028 50.000 0.00 0.00 0.00 3.10
398 399 2.344950 CAGGGCAGCGATAATCATCTC 58.655 52.381 0.00 0.00 0.00 2.75
399 400 1.002888 CCAGGGCAGCGATAATCATCT 59.997 52.381 0.00 0.00 0.00 2.90
400 401 1.271054 ACCAGGGCAGCGATAATCATC 60.271 52.381 0.00 0.00 0.00 2.92
401 402 0.767375 ACCAGGGCAGCGATAATCAT 59.233 50.000 0.00 0.00 0.00 2.45
402 403 0.546122 AACCAGGGCAGCGATAATCA 59.454 50.000 0.00 0.00 0.00 2.57
403 404 2.224305 ACTAACCAGGGCAGCGATAATC 60.224 50.000 0.00 0.00 0.00 1.75
404 405 1.768870 ACTAACCAGGGCAGCGATAAT 59.231 47.619 0.00 0.00 0.00 1.28
405 406 1.134521 CACTAACCAGGGCAGCGATAA 60.135 52.381 0.00 0.00 0.00 1.75
406 407 0.464036 CACTAACCAGGGCAGCGATA 59.536 55.000 0.00 0.00 0.00 2.92
407 408 1.221840 CACTAACCAGGGCAGCGAT 59.778 57.895 0.00 0.00 0.00 4.58
408 409 2.662596 CACTAACCAGGGCAGCGA 59.337 61.111 0.00 0.00 0.00 4.93
414 415 0.739813 GTAGTGCGCACTAACCAGGG 60.740 60.000 42.80 0.00 44.62 4.45
415 416 0.246635 AGTAGTGCGCACTAACCAGG 59.753 55.000 42.80 0.00 44.62 4.45
416 417 1.067846 TCAGTAGTGCGCACTAACCAG 60.068 52.381 42.80 31.61 44.62 4.00
417 418 0.963225 TCAGTAGTGCGCACTAACCA 59.037 50.000 42.80 28.65 44.62 3.67
418 419 1.347320 GTCAGTAGTGCGCACTAACC 58.653 55.000 42.80 32.71 44.62 2.85
419 420 1.067776 AGGTCAGTAGTGCGCACTAAC 60.068 52.381 42.80 35.71 44.62 2.34
420 421 1.067846 CAGGTCAGTAGTGCGCACTAA 60.068 52.381 42.80 29.17 44.62 2.24
421 422 0.526211 CAGGTCAGTAGTGCGCACTA 59.474 55.000 39.24 39.24 42.54 2.74
443 444 3.071747 GGGCCCACAAAATTTCCACTTAA 59.928 43.478 19.95 0.00 0.00 1.85
458 459 4.767255 CGTGAGAGCTGGGCCCAC 62.767 72.222 24.45 18.37 0.00 4.61
501 502 2.408704 GTCAAGATTCCTTCGTGTGTCG 59.591 50.000 0.00 0.00 35.57 4.35
579 580 2.745884 CTTGGTTCCATGGCGCGA 60.746 61.111 12.10 0.00 0.00 5.87
869 873 2.284331 TAGAAGCGTGGGGAGGCA 60.284 61.111 0.00 0.00 0.00 4.75
909 913 4.820897 AGCGGGGATTTTTGAAAAATCTC 58.179 39.130 30.83 29.04 36.61 2.75
949 953 6.628398 CGAGTTTTATAGCAGAAAGAGGAGGT 60.628 42.308 0.00 0.00 0.00 3.85
974 978 4.358851 CTCTCGACTGATGAAGATTGGAC 58.641 47.826 0.00 0.00 0.00 4.02
1080 1108 2.734723 CGACCTCACCGTGCACAG 60.735 66.667 18.64 8.33 0.00 3.66
1135 1163 0.111639 TGGGGTTGTAGGCCTTGAAC 59.888 55.000 12.58 14.34 0.00 3.18
1167 1195 1.609501 CCGACCCAGGTCTTCAGGA 60.610 63.158 14.69 0.00 42.54 3.86
1420 1448 1.302832 CAGCGAAAGGTTGAGGCCT 60.303 57.895 3.86 3.86 41.81 5.19
1630 1658 6.194463 CACTGCATTGTAAGCATGTATACAC 58.806 40.000 7.96 0.00 41.82 2.90
1636 1664 2.794103 TCCACTGCATTGTAAGCATGT 58.206 42.857 3.14 0.00 41.82 3.21
1661 1689 1.026718 GTGGTAGCATTTGAGGCGCT 61.027 55.000 7.64 0.00 39.80 5.92
1718 1749 3.749064 GCTCGGACTGCCACTCGA 61.749 66.667 0.00 0.00 0.00 4.04
1720 1751 1.882989 AAGAGCTCGGACTGCCACTC 61.883 60.000 8.37 0.00 0.00 3.51
1879 1910 1.062587 GCACTGGATTTGGAATCGTCG 59.937 52.381 0.00 0.00 0.00 5.12
1901 1932 1.924731 TCCTCCTCGAAGCAAAGAGA 58.075 50.000 4.26 0.00 36.65 3.10
1921 1952 2.894731 TCACCACTCCTGATCTTGTCT 58.105 47.619 0.00 0.00 0.00 3.41
1933 1964 1.070758 TGGCACTTCTCTTCACCACTC 59.929 52.381 0.00 0.00 0.00 3.51
1945 1976 3.882025 CCGCTCTTCTGGCACTTC 58.118 61.111 0.00 0.00 0.00 3.01
1966 1997 2.125912 CCGTCGAAGCAGACCAGG 60.126 66.667 0.00 0.00 37.85 4.45
2203 2234 1.626654 CGCCGTTGGAGTTGCAGTAG 61.627 60.000 0.00 0.00 0.00 2.57
2306 2337 3.316283 TGAAAATTCACGGCTGATTTGC 58.684 40.909 0.00 0.00 31.01 3.68
2337 2368 5.587443 CACTTCTTGCATCAATGGAGATGTA 59.413 40.000 5.90 0.00 45.58 2.29
2366 2400 0.670546 CACCTGTAACAGCCCGTCAG 60.671 60.000 0.00 0.00 0.00 3.51
2406 2441 2.125912 CTTCGTCGCCCAGTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
2792 2827 1.456705 CTCCTCCCCTTCTCCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
2798 2833 0.397816 CCATCGTCTCCTCCCCTTCT 60.398 60.000 0.00 0.00 0.00 2.85
2914 2949 2.286184 CGTGACACTACACCAGCAAAAC 60.286 50.000 3.68 0.00 37.48 2.43
2918 2953 1.110518 TCCGTGACACTACACCAGCA 61.111 55.000 3.68 0.00 37.48 4.41
2921 2956 3.070446 AGAAATTCCGTGACACTACACCA 59.930 43.478 3.68 0.00 37.48 4.17
2929 2967 2.066262 GCTCGAAGAAATTCCGTGACA 58.934 47.619 0.00 0.00 34.09 3.58
2946 2984 1.736681 CAGGCTACTTCTGCAAAGCTC 59.263 52.381 8.09 0.00 35.30 4.09
2947 2985 1.072965 ACAGGCTACTTCTGCAAAGCT 59.927 47.619 8.09 0.00 35.78 3.74
3053 3165 7.039270 GGTTGCGAGATTTTATGGGTTTTATT 58.961 34.615 0.00 0.00 0.00 1.40
3054 3166 6.153680 TGGTTGCGAGATTTTATGGGTTTTAT 59.846 34.615 0.00 0.00 0.00 1.40
3056 3168 4.282195 TGGTTGCGAGATTTTATGGGTTTT 59.718 37.500 0.00 0.00 0.00 2.43
3067 3179 2.744202 GTCATGAGTTGGTTGCGAGATT 59.256 45.455 0.00 0.00 0.00 2.40
3087 3199 4.970860 AGCTTGCTATCCATATGTCAGT 57.029 40.909 1.24 0.00 0.00 3.41
3091 3205 4.141413 TGTGGAAGCTTGCTATCCATATGT 60.141 41.667 19.34 0.00 44.55 2.29
3094 3208 3.199727 TGTGTGGAAGCTTGCTATCCATA 59.800 43.478 19.34 17.36 44.55 2.74
3117 3231 3.689872 AGAGCTAGTTATGGACAGGGA 57.310 47.619 0.00 0.00 0.00 4.20
3129 3243 6.360370 TTGAAGTATCACCAAAGAGCTAGT 57.640 37.500 0.00 0.00 34.61 2.57
3149 3263 5.780282 TGTTAAGAGAGACCTGAAGGATTGA 59.220 40.000 2.62 0.00 38.94 2.57
3173 3287 1.645710 ATTTGACGTGGGAGGAGTCT 58.354 50.000 0.00 0.00 36.01 3.24
3185 3299 1.648504 GGGGTAGACCGAATTTGACG 58.351 55.000 0.00 0.00 41.60 4.35
3416 3530 5.808540 GCGACATGTTCAACAGTTAGGTATA 59.191 40.000 0.00 0.00 0.00 1.47
3418 3532 3.991773 GCGACATGTTCAACAGTTAGGTA 59.008 43.478 0.00 0.00 0.00 3.08
3622 3736 2.823154 CGGTATTTGGGGTCAATGTTGT 59.177 45.455 0.00 0.00 32.28 3.32
3645 3759 0.531200 GTACCTCGGAAGGACACCTG 59.469 60.000 0.00 0.00 46.67 4.00
3694 3808 5.709164 GGTTTCAGTACTACTAGGTGTGAGA 59.291 44.000 0.00 0.00 0.00 3.27
3892 4006 6.795144 ATCTTTTTGCATTGGTGATGGATA 57.205 33.333 0.00 0.00 35.89 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.