Multiple sequence alignment - TraesCS2A01G184800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G184800 chr2A 100.000 5759 0 0 1 5759 144959499 144953741 0.000000e+00 10635.0
1 TraesCS2A01G184800 chr2A 94.048 84 5 0 4171 4254 333751392 333751309 1.680000e-25 128.0
2 TraesCS2A01G184800 chr2B 96.309 3224 104 10 790 4004 212296566 212299783 0.000000e+00 5280.0
3 TraesCS2A01G184800 chr2B 82.916 1516 132 69 4254 5731 212300049 212301475 0.000000e+00 1247.0
4 TraesCS2A01G184800 chr2B 95.238 63 3 0 4107 4169 212300004 212300066 3.670000e-17 100.0
5 TraesCS2A01G184800 chr2D 92.946 1843 77 20 625 2431 155161592 155163417 0.000000e+00 2634.0
6 TraesCS2A01G184800 chr2D 93.480 1365 76 5 2429 3782 155163697 155165059 0.000000e+00 2015.0
7 TraesCS2A01G184800 chr2D 95.112 982 46 2 2980 3959 155332658 155333639 0.000000e+00 1546.0
8 TraesCS2A01G184800 chr2D 92.777 1066 61 5 1929 2984 155178461 155179520 0.000000e+00 1528.0
9 TraesCS2A01G184800 chr2D 85.758 976 63 34 4254 5206 155333913 155334835 0.000000e+00 963.0
10 TraesCS2A01G184800 chr2D 86.815 584 47 18 4254 4823 155165898 155166465 4.900000e-175 625.0
11 TraesCS2A01G184800 chr2D 88.221 399 40 5 183 578 155161194 155161588 2.430000e-128 470.0
12 TraesCS2A01G184800 chr2D 83.173 416 26 16 5325 5738 155338040 155338413 1.990000e-89 340.0
13 TraesCS2A01G184800 chr2D 91.667 240 9 2 1659 1898 155178234 155178462 7.200000e-84 322.0
14 TraesCS2A01G184800 chr2D 87.168 226 24 2 3779 4004 155165315 155165535 9.580000e-63 252.0
15 TraesCS2A01G184800 chr2D 90.058 171 11 2 4005 4169 155333760 155333930 3.490000e-52 217.0
16 TraesCS2A01G184800 chr2D 90.196 153 15 0 2 154 155160772 155160924 3.520000e-47 200.0
17 TraesCS2A01G184800 chr2D 91.954 87 7 0 4168 4254 284540666 284540752 7.840000e-24 122.0
18 TraesCS2A01G184800 chr2D 85.124 121 11 2 4049 4169 155165802 155165915 3.650000e-22 117.0
19 TraesCS2A01G184800 chr2D 94.872 39 2 0 5679 5717 155167699 155167737 1.730000e-05 62.1
20 TraesCS2A01G184800 chr7D 81.899 337 38 17 4502 4837 7531619 7531933 4.430000e-66 263.0
21 TraesCS2A01G184800 chr4D 94.624 93 3 1 4171 4261 85340951 85340859 6.020000e-30 143.0
22 TraesCS2A01G184800 chr6B 91.837 98 7 1 4171 4268 464922105 464922009 1.010000e-27 135.0
23 TraesCS2A01G184800 chr6D 92.222 90 5 2 4171 4259 126632450 126632362 6.060000e-25 126.0
24 TraesCS2A01G184800 chr6D 92.222 90 6 1 4171 4259 299908779 299908690 6.060000e-25 126.0
25 TraesCS2A01G184800 chrUn 93.023 86 5 1 4171 4256 137674051 137673967 2.180000e-24 124.0
26 TraesCS2A01G184800 chr3D 97.260 73 2 0 4173 4245 250930845 250930917 2.180000e-24 124.0
27 TraesCS2A01G184800 chr6A 90.000 90 6 2 4171 4259 417624648 417624735 4.720000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G184800 chr2A 144953741 144959499 5758 True 10635.0000 10635 100.000000 1 5759 1 chr2A.!!$R1 5758
1 TraesCS2A01G184800 chr2B 212296566 212301475 4909 False 2209.0000 5280 91.487667 790 5731 3 chr2B.!!$F1 4941
2 TraesCS2A01G184800 chr2D 155178234 155179520 1286 False 925.0000 1528 92.222000 1659 2984 2 chr2D.!!$F3 1325
3 TraesCS2A01G184800 chr2D 155160772 155167737 6965 False 796.8875 2634 89.852750 2 5717 8 chr2D.!!$F2 5715
4 TraesCS2A01G184800 chr2D 155332658 155338413 5755 False 766.5000 1546 88.525250 2980 5738 4 chr2D.!!$F4 2758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 489 0.030705 TGGAGGAGATGGGAAGGGAG 60.031 60.000 0.00 0.00 0.00 4.30 F
778 1037 0.610687 CCCTCTCTCCGCTCTGTTTT 59.389 55.000 0.00 0.00 0.00 2.43 F
1645 1915 0.310543 TGGCAAGTGTCGATTGTTGC 59.689 50.000 16.13 16.13 43.73 4.17 F
2061 2334 1.071699 TGTTTATCCTATCCCTGCCGC 59.928 52.381 0.00 0.00 0.00 6.53 F
3822 4661 0.869730 CCCCGTCACGTTGGTTTTAG 59.130 55.000 0.00 0.00 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1519 0.865769 CTCAAACGAACACGGGAAGG 59.134 55.000 0.0 0.0 0.00 3.46 R
1805 2076 2.567985 TCACGAGAACAAAAGGGGAAC 58.432 47.619 0.0 0.0 0.00 3.62 R
3153 3731 1.745653 CGCCCTTCAGAAATTCCCTTC 59.254 52.381 0.0 0.0 0.00 3.46 R
3968 4807 0.521735 GTCCATCAAGGCACGGAAAC 59.478 55.000 0.0 0.0 37.29 2.78 R
5239 9463 0.109272 CGCCTACAGACGAGCTCAAA 60.109 55.000 15.4 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.825281 GCCTGAGGCGCTAGATCCAT 61.825 60.000 8.16 0.00 39.62 3.41
33 34 0.246086 CCTGAGGCGCTAGATCCATC 59.754 60.000 7.64 0.00 0.00 3.51
63 64 1.692042 CACAGGGGCCTCCATCTCT 60.692 63.158 0.00 0.00 38.24 3.10
97 98 2.202797 CACGAGGAGGATGTGCCG 60.203 66.667 0.00 0.00 43.43 5.69
101 102 3.011517 AGGAGGATGTGCCGGCTT 61.012 61.111 29.70 12.77 43.43 4.35
135 136 1.000896 ACAGGGAGAATTTGCCCCG 60.001 57.895 11.73 5.78 45.89 5.73
154 155 1.621107 GCGGTTGCATGTCATCTTTG 58.379 50.000 0.00 0.00 42.15 2.77
155 156 1.621107 CGGTTGCATGTCATCTTTGC 58.379 50.000 0.00 0.00 36.91 3.68
156 157 1.733389 CGGTTGCATGTCATCTTTGCC 60.733 52.381 0.00 0.00 35.51 4.52
157 158 1.621107 GTTGCATGTCATCTTTGCCG 58.379 50.000 0.00 0.00 35.51 5.69
158 159 0.527113 TTGCATGTCATCTTTGCCGG 59.473 50.000 0.00 0.00 35.51 6.13
159 160 1.226773 GCATGTCATCTTTGCCGGC 60.227 57.895 22.73 22.73 0.00 6.13
161 162 0.099968 CATGTCATCTTTGCCGGCAG 59.900 55.000 30.75 19.71 0.00 4.85
162 163 1.033746 ATGTCATCTTTGCCGGCAGG 61.034 55.000 30.75 24.96 41.62 4.85
163 164 1.675641 GTCATCTTTGCCGGCAGGT 60.676 57.895 30.75 13.17 40.50 4.00
165 166 0.960364 TCATCTTTGCCGGCAGGTTC 60.960 55.000 30.75 0.00 40.50 3.62
166 167 0.962356 CATCTTTGCCGGCAGGTTCT 60.962 55.000 30.75 11.92 40.50 3.01
167 168 0.962356 ATCTTTGCCGGCAGGTTCTG 60.962 55.000 30.75 16.23 40.50 3.02
176 177 4.386413 CAGGTTCTGCTGGACCAC 57.614 61.111 22.07 0.00 0.00 4.16
177 178 1.302832 CAGGTTCTGCTGGACCACC 60.303 63.158 22.07 8.11 0.00 4.61
179 180 1.150536 GGTTCTGCTGGACCACCAA 59.849 57.895 15.91 0.00 46.32 3.67
180 181 0.890996 GGTTCTGCTGGACCACCAAG 60.891 60.000 15.91 0.00 46.32 3.61
181 182 0.179018 GTTCTGCTGGACCACCAAGT 60.179 55.000 0.00 0.00 46.32 3.16
187 429 1.156736 CTGGACCACCAAGTTTAGCG 58.843 55.000 0.00 0.00 46.32 4.26
197 439 4.237349 CCAAGTTTAGCGAATTGGTTGT 57.763 40.909 8.27 0.00 37.90 3.32
203 445 5.529800 AGTTTAGCGAATTGGTTGTACTTGT 59.470 36.000 0.00 0.00 0.00 3.16
204 446 3.896648 AGCGAATTGGTTGTACTTGTG 57.103 42.857 0.00 0.00 0.00 3.33
205 447 2.552315 AGCGAATTGGTTGTACTTGTGG 59.448 45.455 0.00 0.00 0.00 4.17
237 479 4.023291 GTCTTTGAGAGAGTGGAGGAGAT 58.977 47.826 0.00 0.00 34.31 2.75
247 489 0.030705 TGGAGGAGATGGGAAGGGAG 60.031 60.000 0.00 0.00 0.00 4.30
253 495 2.368878 ATGGGAAGGGAGGAGGCC 60.369 66.667 0.00 0.00 0.00 5.19
272 514 2.364448 GAAGAGGGGAGAGGCGGT 60.364 66.667 0.00 0.00 0.00 5.68
285 527 2.750237 GCGGTTAGGCCCTTGGTG 60.750 66.667 0.00 0.00 0.00 4.17
290 532 0.623723 GTTAGGCCCTTGGTGATGGA 59.376 55.000 0.00 0.00 0.00 3.41
329 571 3.134127 GGCCATCCGAACAGCCAC 61.134 66.667 0.00 0.00 45.07 5.01
330 572 3.499737 GCCATCCGAACAGCCACG 61.500 66.667 0.00 0.00 0.00 4.94
331 573 2.047274 CCATCCGAACAGCCACGT 60.047 61.111 0.00 0.00 0.00 4.49
342 587 3.896648 ACAGCCACGTTTAATGAACAG 57.103 42.857 0.00 0.00 38.18 3.16
350 595 5.008811 CCACGTTTAATGAACAGGTGGTTAA 59.991 40.000 7.50 0.00 41.26 2.01
352 597 5.141568 CGTTTAATGAACAGGTGGTTAACG 58.858 41.667 0.00 0.00 40.63 3.18
377 622 2.276201 CGTTGCCTCATTCGTCCATAA 58.724 47.619 0.00 0.00 0.00 1.90
378 623 2.030457 CGTTGCCTCATTCGTCCATAAC 59.970 50.000 0.00 0.00 0.00 1.89
390 635 7.827236 TCATTCGTCCATAACTAATTGGAAACT 59.173 33.333 0.00 0.00 43.42 2.66
405 650 3.071892 TGGAAACTCGGAGGTGTGTTAAT 59.928 43.478 10.23 0.00 0.00 1.40
410 655 2.236395 CTCGGAGGTGTGTTAATCCCTT 59.764 50.000 0.00 0.00 0.00 3.95
418 663 4.494484 GTGTGTTAATCCCTTTTGATGGC 58.506 43.478 0.00 0.00 0.00 4.40
428 673 4.706476 TCCCTTTTGATGGCAATTCTAGTG 59.294 41.667 0.00 0.00 33.25 2.74
436 681 3.826524 TGGCAATTCTAGTGGTTTCACA 58.173 40.909 0.00 0.00 45.91 3.58
476 721 7.851228 AGAGTACATGACATCTCAAACCATTA 58.149 34.615 0.00 0.00 0.00 1.90
531 776 8.697846 AAAAATCAAAGATGTCGTATCGTCTA 57.302 30.769 0.00 0.00 33.88 2.59
585 830 9.685828 TTTACTAAAATTGAAAGAAATGACCCG 57.314 29.630 0.00 0.00 0.00 5.28
586 831 7.519032 ACTAAAATTGAAAGAAATGACCCGA 57.481 32.000 0.00 0.00 0.00 5.14
587 832 7.368059 ACTAAAATTGAAAGAAATGACCCGAC 58.632 34.615 0.00 0.00 0.00 4.79
588 833 6.405278 AAAATTGAAAGAAATGACCCGACT 57.595 33.333 0.00 0.00 0.00 4.18
589 834 6.405278 AAATTGAAAGAAATGACCCGACTT 57.595 33.333 0.00 0.00 0.00 3.01
590 835 6.405278 AATTGAAAGAAATGACCCGACTTT 57.595 33.333 0.00 0.00 34.24 2.66
591 836 5.845391 TTGAAAGAAATGACCCGACTTTT 57.155 34.783 0.00 0.00 32.20 2.27
592 837 5.181690 TGAAAGAAATGACCCGACTTTTG 57.818 39.130 0.00 0.00 32.20 2.44
593 838 4.642885 TGAAAGAAATGACCCGACTTTTGT 59.357 37.500 0.00 0.00 32.20 2.83
594 839 4.830826 AAGAAATGACCCGACTTTTGTC 57.169 40.909 0.00 0.00 45.55 3.18
595 840 4.086706 AGAAATGACCCGACTTTTGTCT 57.913 40.909 0.00 0.00 46.76 3.41
596 841 5.223449 AGAAATGACCCGACTTTTGTCTA 57.777 39.130 0.00 0.00 46.76 2.59
597 842 4.995487 AGAAATGACCCGACTTTTGTCTAC 59.005 41.667 0.00 0.00 46.76 2.59
598 843 4.618920 AATGACCCGACTTTTGTCTACT 57.381 40.909 0.00 0.00 46.76 2.57
599 844 5.733620 AATGACCCGACTTTTGTCTACTA 57.266 39.130 0.00 0.00 46.76 1.82
600 845 5.733620 ATGACCCGACTTTTGTCTACTAA 57.266 39.130 0.00 0.00 46.76 2.24
601 846 5.534207 TGACCCGACTTTTGTCTACTAAA 57.466 39.130 0.00 0.00 46.76 1.85
602 847 5.535333 TGACCCGACTTTTGTCTACTAAAG 58.465 41.667 13.21 13.21 46.76 1.85
603 848 4.313282 ACCCGACTTTTGTCTACTAAAGC 58.687 43.478 14.29 8.34 46.76 3.51
604 849 4.040095 ACCCGACTTTTGTCTACTAAAGCT 59.960 41.667 14.29 5.03 46.76 3.74
605 850 5.244626 ACCCGACTTTTGTCTACTAAAGCTA 59.755 40.000 14.29 0.00 46.76 3.32
606 851 6.161381 CCCGACTTTTGTCTACTAAAGCTAA 58.839 40.000 14.29 0.00 46.76 3.09
607 852 6.647895 CCCGACTTTTGTCTACTAAAGCTAAA 59.352 38.462 14.29 0.00 46.76 1.85
608 853 7.172019 CCCGACTTTTGTCTACTAAAGCTAAAA 59.828 37.037 14.29 0.00 46.76 1.52
609 854 8.008279 CCGACTTTTGTCTACTAAAGCTAAAAC 58.992 37.037 14.29 2.90 46.76 2.43
610 855 7.734726 CGACTTTTGTCTACTAAAGCTAAAACG 59.265 37.037 14.29 8.69 46.76 3.60
611 856 7.350467 ACTTTTGTCTACTAAAGCTAAAACGC 58.650 34.615 14.29 0.00 40.59 4.84
612 857 6.847956 TTTGTCTACTAAAGCTAAAACGCA 57.152 33.333 0.00 0.00 0.00 5.24
613 858 6.462073 TTGTCTACTAAAGCTAAAACGCAG 57.538 37.500 0.00 0.00 0.00 5.18
614 859 4.387862 TGTCTACTAAAGCTAAAACGCAGC 59.612 41.667 0.00 0.00 39.41 5.25
615 860 4.387862 GTCTACTAAAGCTAAAACGCAGCA 59.612 41.667 0.00 0.00 41.66 4.41
616 861 3.537793 ACTAAAGCTAAAACGCAGCAC 57.462 42.857 0.00 0.00 41.66 4.40
617 862 3.139077 ACTAAAGCTAAAACGCAGCACT 58.861 40.909 0.00 0.00 41.66 4.40
618 863 3.564225 ACTAAAGCTAAAACGCAGCACTT 59.436 39.130 0.00 0.00 41.66 3.16
619 864 2.688364 AAGCTAAAACGCAGCACTTC 57.312 45.000 0.00 0.00 41.66 3.01
620 865 1.884235 AGCTAAAACGCAGCACTTCT 58.116 45.000 0.00 0.00 41.66 2.85
621 866 1.532868 AGCTAAAACGCAGCACTTCTG 59.467 47.619 0.00 0.00 45.62 3.02
622 867 1.531149 GCTAAAACGCAGCACTTCTGA 59.469 47.619 0.00 0.00 45.72 3.27
623 868 2.032030 GCTAAAACGCAGCACTTCTGAA 60.032 45.455 0.00 0.00 45.72 3.02
710 956 4.944048 ACATTTTGCAAACCAGGAAGTAC 58.056 39.130 12.39 0.00 0.00 2.73
774 1033 1.118838 AAATCCCTCTCTCCGCTCTG 58.881 55.000 0.00 0.00 0.00 3.35
778 1037 0.610687 CCCTCTCTCCGCTCTGTTTT 59.389 55.000 0.00 0.00 0.00 2.43
779 1038 1.002544 CCCTCTCTCCGCTCTGTTTTT 59.997 52.381 0.00 0.00 0.00 1.94
780 1039 2.072298 CCTCTCTCCGCTCTGTTTTTG 58.928 52.381 0.00 0.00 0.00 2.44
781 1040 2.072298 CTCTCTCCGCTCTGTTTTTGG 58.928 52.381 0.00 0.00 0.00 3.28
782 1041 1.691976 TCTCTCCGCTCTGTTTTTGGA 59.308 47.619 0.00 0.00 0.00 3.53
783 1042 2.072298 CTCTCCGCTCTGTTTTTGGAG 58.928 52.381 0.12 0.12 46.06 3.86
784 1043 1.160137 CTCCGCTCTGTTTTTGGAGG 58.840 55.000 0.00 0.00 42.00 4.30
859 1118 3.188786 CCGCGCTTGCTCACTACC 61.189 66.667 5.56 0.00 36.08 3.18
864 1123 0.872021 CGCTTGCTCACTACCGATCC 60.872 60.000 0.00 0.00 0.00 3.36
907 1166 4.147449 TCCGCCTCCAGCATCGTG 62.147 66.667 0.00 0.00 44.04 4.35
915 1181 2.584418 CAGCATCGTGGAGCCTCG 60.584 66.667 4.72 4.72 0.00 4.63
1032 1298 3.182887 AGAGTGAAGGATCAGGTGAGT 57.817 47.619 0.00 0.00 35.88 3.41
1197 1463 4.689612 TCCAGGATTCTTAGTACATGCC 57.310 45.455 0.00 0.00 0.00 4.40
1210 1476 1.280746 CATGCCGATGTTCGCCATC 59.719 57.895 5.19 5.19 35.68 3.51
1250 1516 3.442977 AGCTAAATTTCAAGCTCCTGCAG 59.557 43.478 6.78 6.78 45.92 4.41
1253 1519 0.886563 ATTTCAAGCTCCTGCAGTGC 59.113 50.000 13.81 16.16 42.74 4.40
1335 1605 6.722225 GTTGTGTGCTGACAACCTGTCTTG 62.722 50.000 16.39 3.02 46.74 3.02
1341 1611 2.622064 GACAACCTGTCTTGTCCTGT 57.378 50.000 0.00 0.00 43.73 4.00
1349 1619 6.227298 ACCTGTCTTGTCCTGTATAATCTG 57.773 41.667 0.00 0.00 0.00 2.90
1484 1754 7.003939 TCAGTAACATCACATCTTTAATGCG 57.996 36.000 0.00 0.00 0.00 4.73
1608 1878 3.555956 GTGCCGTATCACATAGTTTCTGG 59.444 47.826 0.00 0.00 36.97 3.86
1645 1915 0.310543 TGGCAAGTGTCGATTGTTGC 59.689 50.000 16.13 16.13 43.73 4.17
1669 1939 4.142708 TGCAGGTCTATTGTAACAATTGCG 60.143 41.667 5.05 0.00 0.00 4.85
1798 2069 6.023603 AGTTTTCTCTTGGTGATAGTAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
1799 2070 6.674419 AGTTTTCTCTTGGTGATAGTAGGGAT 59.326 38.462 0.00 0.00 0.00 3.85
1805 2076 4.676799 TGGTGATAGTAGGGATAGGAGG 57.323 50.000 0.00 0.00 0.00 4.30
1822 2093 2.152016 GAGGTTCCCCTTTTGTTCTCG 58.848 52.381 0.00 0.00 42.86 4.04
1833 2104 7.014808 TCCCCTTTTGTTCTCGTGAATTTATTT 59.985 33.333 2.88 0.00 34.40 1.40
1956 2227 9.587772 CCATTCTACCATAATCTACCGATTAAG 57.412 37.037 0.00 0.00 43.32 1.85
2061 2334 1.071699 TGTTTATCCTATCCCTGCCGC 59.928 52.381 0.00 0.00 0.00 6.53
2474 3041 5.587443 TCACCAAGTATTCATCATTCTGCAG 59.413 40.000 7.63 7.63 0.00 4.41
2841 3417 3.199289 TCCCTTTCTCGGTATTCTTTCCC 59.801 47.826 0.00 0.00 0.00 3.97
3029 3606 8.983702 TTTACCCAACTTACTGACTGTATTTT 57.016 30.769 0.00 0.00 0.00 1.82
3172 3750 2.493675 GTGAAGGGAATTTCTGAAGGGC 59.506 50.000 0.00 0.00 0.00 5.19
3525 4105 6.393990 TGATTTAACATTTCATCGTTTGGGG 58.606 36.000 0.00 0.00 0.00 4.96
3530 4110 3.639094 ACATTTCATCGTTTGGGGTGAAA 59.361 39.130 3.75 3.75 42.61 2.69
3655 4235 5.986741 ACAATGGGTTTCGTGGTTTAAATTC 59.013 36.000 0.00 0.00 0.00 2.17
3677 4257 6.509418 TCTTGTGTTATAACCATCTTTGCC 57.491 37.500 13.01 0.00 0.00 4.52
3696 4276 4.558178 TGCCACAAAATTGCACATTCTAG 58.442 39.130 0.00 0.00 0.00 2.43
3783 4363 7.655732 GTGGCAGTTTGTAATTAAAATCTTGGT 59.344 33.333 0.00 0.00 0.00 3.67
3822 4661 0.869730 CCCCGTCACGTTGGTTTTAG 59.130 55.000 0.00 0.00 0.00 1.85
3833 4672 9.934190 GTCACGTTGGTTTTAGACTTTTTATTA 57.066 29.630 0.00 0.00 0.00 0.98
3874 4713 5.559427 ACATACTCGTTGCATTGCATTAA 57.441 34.783 12.95 0.00 38.76 1.40
3881 4720 8.118893 ACTCGTTGCATTGCATTAAAAATATC 57.881 30.769 12.95 0.00 38.76 1.63
3937 4776 4.201950 GCTGTCTCGTTGAATTATGCCAAT 60.202 41.667 0.00 0.00 0.00 3.16
3968 4807 9.643652 GAACTTTTCGCATCTTTCTATTATCAG 57.356 33.333 0.00 0.00 0.00 2.90
4155 5240 2.108075 TCTGTTCATCCTTTGGGAAGCA 59.892 45.455 0.00 0.00 45.78 3.91
4156 5241 2.892852 CTGTTCATCCTTTGGGAAGCAA 59.107 45.455 0.00 0.00 45.78 3.91
4157 5242 2.892852 TGTTCATCCTTTGGGAAGCAAG 59.107 45.455 0.00 0.00 45.78 4.01
4158 5243 3.157087 GTTCATCCTTTGGGAAGCAAGA 58.843 45.455 0.00 0.00 45.78 3.02
4159 5244 3.524095 TCATCCTTTGGGAAGCAAGAA 57.476 42.857 0.00 0.00 45.78 2.52
4160 5245 3.843422 TCATCCTTTGGGAAGCAAGAAA 58.157 40.909 0.00 0.00 45.78 2.52
4161 5246 4.222336 TCATCCTTTGGGAAGCAAGAAAA 58.778 39.130 0.00 0.00 45.78 2.29
4162 5247 4.840115 TCATCCTTTGGGAAGCAAGAAAAT 59.160 37.500 0.00 0.00 45.78 1.82
4163 5248 4.605640 TCCTTTGGGAAGCAAGAAAATG 57.394 40.909 0.00 0.00 38.93 2.32
4164 5249 4.222336 TCCTTTGGGAAGCAAGAAAATGA 58.778 39.130 0.00 0.00 38.93 2.57
4165 5250 4.281688 TCCTTTGGGAAGCAAGAAAATGAG 59.718 41.667 0.00 0.00 38.93 2.90
4166 5251 4.281688 CCTTTGGGAAGCAAGAAAATGAGA 59.718 41.667 0.00 0.00 33.58 3.27
4167 5252 4.853924 TTGGGAAGCAAGAAAATGAGAC 57.146 40.909 0.00 0.00 0.00 3.36
4168 5253 4.104383 TGGGAAGCAAGAAAATGAGACT 57.896 40.909 0.00 0.00 0.00 3.24
4169 5254 4.473444 TGGGAAGCAAGAAAATGAGACTT 58.527 39.130 0.00 0.00 0.00 3.01
4170 5255 4.895297 TGGGAAGCAAGAAAATGAGACTTT 59.105 37.500 0.00 0.00 0.00 2.66
4171 5256 6.068010 TGGGAAGCAAGAAAATGAGACTTTA 58.932 36.000 0.00 0.00 0.00 1.85
4172 5257 6.016276 TGGGAAGCAAGAAAATGAGACTTTAC 60.016 38.462 0.00 0.00 0.00 2.01
4173 5258 6.382608 GGAAGCAAGAAAATGAGACTTTACC 58.617 40.000 0.00 0.00 0.00 2.85
4174 5259 6.207614 GGAAGCAAGAAAATGAGACTTTACCT 59.792 38.462 0.00 0.00 0.00 3.08
4175 5260 6.809630 AGCAAGAAAATGAGACTTTACCTC 57.190 37.500 0.00 0.00 0.00 3.85
4176 5261 5.707764 AGCAAGAAAATGAGACTTTACCTCC 59.292 40.000 0.00 0.00 0.00 4.30
4177 5262 5.707764 GCAAGAAAATGAGACTTTACCTCCT 59.292 40.000 0.00 0.00 0.00 3.69
4178 5263 6.879458 GCAAGAAAATGAGACTTTACCTCCTA 59.121 38.462 0.00 0.00 0.00 2.94
4179 5264 7.065204 GCAAGAAAATGAGACTTTACCTCCTAG 59.935 40.741 0.00 0.00 0.00 3.02
4180 5265 8.314751 CAAGAAAATGAGACTTTACCTCCTAGA 58.685 37.037 0.00 0.00 0.00 2.43
4181 5266 8.437274 AGAAAATGAGACTTTACCTCCTAGAA 57.563 34.615 0.00 0.00 0.00 2.10
4182 5267 8.536175 AGAAAATGAGACTTTACCTCCTAGAAG 58.464 37.037 0.00 0.00 0.00 2.85
4183 5268 6.800072 AATGAGACTTTACCTCCTAGAAGG 57.200 41.667 0.00 0.00 42.55 3.46
4184 5269 5.531753 TGAGACTTTACCTCCTAGAAGGA 57.468 43.478 0.09 0.00 43.43 3.36
4185 5270 6.093617 TGAGACTTTACCTCCTAGAAGGAT 57.906 41.667 0.09 0.00 44.81 3.24
4186 5271 6.503944 TGAGACTTTACCTCCTAGAAGGATT 58.496 40.000 0.09 0.00 44.81 3.01
4187 5272 6.381420 TGAGACTTTACCTCCTAGAAGGATTG 59.619 42.308 0.09 0.00 44.81 2.67
4188 5273 6.265304 AGACTTTACCTCCTAGAAGGATTGT 58.735 40.000 0.09 0.00 44.81 2.71
4189 5274 7.420029 AGACTTTACCTCCTAGAAGGATTGTA 58.580 38.462 0.09 0.00 44.81 2.41
4190 5275 7.899709 AGACTTTACCTCCTAGAAGGATTGTAA 59.100 37.037 0.09 11.36 44.81 2.41
4191 5276 7.849160 ACTTTACCTCCTAGAAGGATTGTAAC 58.151 38.462 0.09 0.00 44.81 2.50
4192 5277 7.456902 ACTTTACCTCCTAGAAGGATTGTAACA 59.543 37.037 0.09 7.93 44.81 2.41
4193 5278 7.989947 TTACCTCCTAGAAGGATTGTAACAT 57.010 36.000 0.09 0.00 44.81 2.71
4194 5279 9.496710 TTTACCTCCTAGAAGGATTGTAACATA 57.503 33.333 0.09 3.06 44.81 2.29
4195 5280 7.989947 ACCTCCTAGAAGGATTGTAACATAA 57.010 36.000 0.09 0.00 44.81 1.90
4196 5281 8.388656 ACCTCCTAGAAGGATTGTAACATAAA 57.611 34.615 0.09 0.00 44.81 1.40
4197 5282 8.265764 ACCTCCTAGAAGGATTGTAACATAAAC 58.734 37.037 0.09 0.00 44.81 2.01
4198 5283 7.715686 CCTCCTAGAAGGATTGTAACATAAACC 59.284 40.741 0.00 0.00 44.81 3.27
4199 5284 7.571025 TCCTAGAAGGATTGTAACATAAACCC 58.429 38.462 0.00 0.00 40.06 4.11
4200 5285 7.404980 TCCTAGAAGGATTGTAACATAAACCCT 59.595 37.037 0.00 0.00 40.06 4.34
4201 5286 8.711170 CCTAGAAGGATTGTAACATAAACCCTA 58.289 37.037 0.00 0.00 37.67 3.53
4204 5289 9.004231 AGAAGGATTGTAACATAAACCCTATCT 57.996 33.333 0.00 0.00 0.00 1.98
4205 5290 9.628500 GAAGGATTGTAACATAAACCCTATCTT 57.372 33.333 0.00 0.00 0.00 2.40
4206 5291 9.990868 AAGGATTGTAACATAAACCCTATCTTT 57.009 29.630 0.00 0.00 0.00 2.52
4207 5292 9.990868 AGGATTGTAACATAAACCCTATCTTTT 57.009 29.630 0.00 0.00 0.00 2.27
4222 5307 8.512138 ACCCTATCTTTTCAATACAAAGAAACG 58.488 33.333 0.00 0.00 42.23 3.60
4223 5308 7.484959 CCCTATCTTTTCAATACAAAGAAACGC 59.515 37.037 0.00 0.00 42.23 4.84
4224 5309 8.020819 CCTATCTTTTCAATACAAAGAAACGCA 58.979 33.333 0.00 0.00 42.23 5.24
4225 5310 9.393249 CTATCTTTTCAATACAAAGAAACGCAA 57.607 29.630 0.00 0.00 42.23 4.85
4226 5311 7.678194 TCTTTTCAATACAAAGAAACGCAAG 57.322 32.000 0.00 0.00 37.33 4.01
4227 5312 7.476667 TCTTTTCAATACAAAGAAACGCAAGA 58.523 30.769 0.00 0.00 37.33 3.02
4228 5313 7.971168 TCTTTTCAATACAAAGAAACGCAAGAA 59.029 29.630 0.00 0.00 37.33 2.52
4229 5314 8.641499 TTTTCAATACAAAGAAACGCAAGAAT 57.359 26.923 0.00 0.00 43.62 2.40
4230 5315 7.851822 TTCAATACAAAGAAACGCAAGAATC 57.148 32.000 0.00 0.00 43.62 2.52
4231 5316 7.202016 TCAATACAAAGAAACGCAAGAATCT 57.798 32.000 0.00 0.00 43.62 2.40
4232 5317 7.298122 TCAATACAAAGAAACGCAAGAATCTC 58.702 34.615 0.00 0.00 43.62 2.75
4233 5318 7.173218 TCAATACAAAGAAACGCAAGAATCTCT 59.827 33.333 0.00 0.00 43.62 3.10
4234 5319 5.757850 ACAAAGAAACGCAAGAATCTCTT 57.242 34.783 0.00 0.00 37.14 2.85
4235 5320 6.136541 ACAAAGAAACGCAAGAATCTCTTT 57.863 33.333 0.00 0.00 33.78 2.52
4236 5321 5.973565 ACAAAGAAACGCAAGAATCTCTTTG 59.026 36.000 16.71 16.71 33.78 2.77
4237 5322 4.152607 AGAAACGCAAGAATCTCTTTGC 57.847 40.909 0.00 0.00 33.78 3.68
4240 5325 2.601481 CGCAAGAATCTCTTTGCGTT 57.399 45.000 19.74 0.00 42.83 4.84
4241 5326 2.921126 CGCAAGAATCTCTTTGCGTTT 58.079 42.857 19.74 0.00 42.83 3.60
4242 5327 3.300009 CGCAAGAATCTCTTTGCGTTTT 58.700 40.909 19.74 0.00 42.83 2.43
4243 5328 3.358993 CGCAAGAATCTCTTTGCGTTTTC 59.641 43.478 19.74 0.00 42.83 2.29
4244 5329 4.540824 GCAAGAATCTCTTTGCGTTTTCT 58.459 39.130 0.00 0.00 33.78 2.52
4245 5330 4.978580 GCAAGAATCTCTTTGCGTTTTCTT 59.021 37.500 0.00 0.00 33.78 2.52
4246 5331 5.108103 GCAAGAATCTCTTTGCGTTTTCTTG 60.108 40.000 15.34 15.34 46.41 3.02
4247 5332 6.201517 CAAGAATCTCTTTGCGTTTTCTTGA 58.798 36.000 14.79 0.00 46.51 3.02
4248 5333 6.377327 AGAATCTCTTTGCGTTTTCTTGAA 57.623 33.333 0.00 0.00 0.00 2.69
4249 5334 6.795399 AGAATCTCTTTGCGTTTTCTTGAAA 58.205 32.000 0.00 0.00 0.00 2.69
4250 5335 7.257722 AGAATCTCTTTGCGTTTTCTTGAAAA 58.742 30.769 4.61 4.61 0.00 2.29
4251 5336 7.759433 AGAATCTCTTTGCGTTTTCTTGAAAAA 59.241 29.630 9.71 0.00 0.00 1.94
4305 5390 4.574674 ATCCTGCAATTTGGACAGTAGA 57.425 40.909 0.00 0.00 34.90 2.59
4442 5549 1.550524 TCAGCCATTCACGCTACTCTT 59.449 47.619 0.00 0.00 33.91 2.85
4455 5562 5.233476 CACGCTACTCTTTTGTCTTTACACA 59.767 40.000 0.00 0.00 34.61 3.72
4456 5563 5.233689 ACGCTACTCTTTTGTCTTTACACAC 59.766 40.000 0.00 0.00 34.61 3.82
4459 5566 7.126398 GCTACTCTTTTGTCTTTACACACTTG 58.874 38.462 0.00 0.00 34.61 3.16
4464 5571 5.637006 TTTGTCTTTACACACTTGCACTT 57.363 34.783 0.00 0.00 34.61 3.16
4476 5584 6.476380 ACACACTTGCACTTTGTATTTGATTG 59.524 34.615 0.00 0.00 0.00 2.67
4498 5606 2.350522 CCTAACCATGTGTCTCTGCAC 58.649 52.381 0.00 0.00 39.65 4.57
4505 5613 3.064079 GTGTCTCTGCACACACACA 57.936 52.632 12.07 0.00 45.25 3.72
4506 5614 1.586422 GTGTCTCTGCACACACACAT 58.414 50.000 12.07 0.00 45.25 3.21
4507 5615 1.942657 GTGTCTCTGCACACACACATT 59.057 47.619 12.07 0.00 45.25 2.71
4508 5616 2.032549 GTGTCTCTGCACACACACATTC 60.033 50.000 12.07 0.00 45.25 2.67
4557 5665 3.452474 GCTTCTGACAGCAATCGTATCT 58.548 45.455 0.00 0.00 39.83 1.98
4581 5689 3.748048 TCTTCTTGTTCGGCTTCAATCTG 59.252 43.478 0.00 0.00 0.00 2.90
4599 5707 2.376518 TCTGTCCCTTGCATTCTTCCTT 59.623 45.455 0.00 0.00 0.00 3.36
4650 5758 2.541762 GCAGCAACAAGATATCTCGACC 59.458 50.000 5.51 0.00 0.00 4.79
4681 5793 2.917713 ACCCATGATGGCCTAACAAA 57.082 45.000 5.79 0.00 35.79 2.83
4688 5801 1.403323 GATGGCCTAACAAAGCTCTGC 59.597 52.381 3.32 0.00 0.00 4.26
4691 5804 2.010497 GGCCTAACAAAGCTCTGCTAC 58.990 52.381 0.00 0.00 38.25 3.58
4692 5805 2.355209 GGCCTAACAAAGCTCTGCTACT 60.355 50.000 0.00 0.00 38.25 2.57
4710 5823 2.413837 ACTCATTTCAGGGTCGTTTCG 58.586 47.619 0.00 0.00 0.00 3.46
4713 5826 4.081862 ACTCATTTCAGGGTCGTTTCGATA 60.082 41.667 0.00 0.00 38.42 2.92
4797 5910 4.308526 CCAAGATTGGCAGCGAGT 57.691 55.556 0.00 0.00 42.21 4.18
4839 5952 2.065993 CGGATTACGGATAGCACAGG 57.934 55.000 0.00 0.00 39.42 4.00
4867 5980 2.034053 GCATCGGAGGAGAGTAGACTTG 59.966 54.545 0.00 0.00 0.00 3.16
4875 5988 5.503002 GAGGAGAGTAGACTTGGTTCTAGT 58.497 45.833 0.00 0.00 34.91 2.57
4882 5995 6.017192 AGTAGACTTGGTTCTAGTTCATGGA 58.983 40.000 0.00 0.00 28.82 3.41
4945 6058 0.249741 AGGTTCACCGTCCGTTTGAG 60.250 55.000 0.00 0.00 42.08 3.02
4981 6104 1.273327 CATCCCTGGTTCACTTTTGCC 59.727 52.381 0.00 0.00 0.00 4.52
4988 6111 1.963515 GGTTCACTTTTGCCTGGTGAT 59.036 47.619 0.00 0.00 39.30 3.06
5000 6127 2.044946 GGTGATCAGGGTGGGTGC 60.045 66.667 0.00 0.00 0.00 5.01
5020 6147 2.807108 GCCGCTAGTTTCTTATCTGGGG 60.807 54.545 0.00 0.00 0.00 4.96
5049 6176 0.814410 AGAATGCGAGATGCTGGCTG 60.814 55.000 3.25 0.00 46.63 4.85
5096 6223 5.780793 ACCTCTTTAGCCATACTCGGATTAT 59.219 40.000 0.00 0.00 0.00 1.28
5129 6260 6.932356 ATTATCATTGTAGGCACTGACAAG 57.068 37.500 0.00 0.00 41.52 3.16
5172 6314 6.316140 CCCAATGTTTCGATCTGAAAGTATGA 59.684 38.462 11.34 0.00 46.85 2.15
5191 6333 2.038952 TGAGTCAGCAAACATGCTACCT 59.961 45.455 2.59 2.40 44.30 3.08
5232 9456 8.311836 AGCTAACTTTATAGTTGTGCTGTAGAA 58.688 33.333 19.29 0.00 45.23 2.10
5310 9600 3.826754 CGTAGGAGCAGCGGCAGA 61.827 66.667 12.44 0.00 44.61 4.26
5311 9601 2.579201 GTAGGAGCAGCGGCAGAA 59.421 61.111 12.44 0.00 44.61 3.02
5312 9602 1.520342 GTAGGAGCAGCGGCAGAAG 60.520 63.158 12.44 0.00 44.61 2.85
5313 9603 2.725312 TAGGAGCAGCGGCAGAAGG 61.725 63.158 12.44 0.00 44.61 3.46
5314 9604 4.087892 GGAGCAGCGGCAGAAGGA 62.088 66.667 12.44 0.00 44.61 3.36
5315 9605 2.511145 GAGCAGCGGCAGAAGGAG 60.511 66.667 12.44 0.00 44.61 3.69
5316 9606 3.308014 GAGCAGCGGCAGAAGGAGT 62.308 63.158 12.44 0.00 44.61 3.85
5317 9607 1.949847 GAGCAGCGGCAGAAGGAGTA 61.950 60.000 12.44 0.00 44.61 2.59
5318 9608 1.520342 GCAGCGGCAGAAGGAGTAG 60.520 63.158 3.18 0.00 40.72 2.57
5319 9609 1.142748 CAGCGGCAGAAGGAGTAGG 59.857 63.158 1.45 0.00 0.00 3.18
5320 9610 1.000486 AGCGGCAGAAGGAGTAGGA 60.000 57.895 1.45 0.00 0.00 2.94
5321 9611 0.614979 AGCGGCAGAAGGAGTAGGAA 60.615 55.000 1.45 0.00 0.00 3.36
5322 9612 0.466124 GCGGCAGAAGGAGTAGGAAT 59.534 55.000 0.00 0.00 0.00 3.01
5323 9613 1.539280 GCGGCAGAAGGAGTAGGAATC 60.539 57.143 0.00 0.00 0.00 2.52
5324 9614 1.069358 CGGCAGAAGGAGTAGGAATCC 59.931 57.143 0.00 0.00 37.07 3.01
5325 9615 2.119495 GGCAGAAGGAGTAGGAATCCA 58.881 52.381 0.61 0.00 39.47 3.41
5408 9757 2.039818 ACTGGCTGCAGATGATCAAG 57.960 50.000 20.43 4.37 0.00 3.02
5409 9758 0.663688 CTGGCTGCAGATGATCAAGC 59.336 55.000 20.43 3.31 0.00 4.01
5410 9759 1.093496 TGGCTGCAGATGATCAAGCG 61.093 55.000 20.43 3.07 0.00 4.68
5411 9760 1.647629 GCTGCAGATGATCAAGCGG 59.352 57.895 20.43 17.73 36.47 5.52
5412 9761 1.647629 CTGCAGATGATCAAGCGGC 59.352 57.895 8.42 14.19 0.00 6.53
5524 10258 3.058914 CCATTTCAAACCACGTCTCTCAC 60.059 47.826 0.00 0.00 0.00 3.51
5529 10273 0.674534 AACCACGTCTCTCACAGGAC 59.325 55.000 0.00 0.00 0.00 3.85
5535 10279 0.166379 GTCTCTCACAGGACGACGAC 59.834 60.000 0.00 0.00 0.00 4.34
5561 10308 3.251571 CACAGTACGCTAACTTTCCTCC 58.748 50.000 0.00 0.00 0.00 4.30
5599 10346 1.144936 GTCGCCTCCCCTTCATCAG 59.855 63.158 0.00 0.00 0.00 2.90
5600 10347 2.066393 TCGCCTCCCCTTCATCAGG 61.066 63.158 0.00 0.00 43.49 3.86
5620 10370 9.703892 CATCAGGAAGTAAGATAAGAATTCGAT 57.296 33.333 0.00 0.00 0.00 3.59
5625 10375 8.145122 GGAAGTAAGATAAGAATTCGATGGAGT 58.855 37.037 0.00 0.00 0.00 3.85
5626 10376 9.187455 GAAGTAAGATAAGAATTCGATGGAGTC 57.813 37.037 0.00 0.00 0.00 3.36
5627 10377 8.239038 AGTAAGATAAGAATTCGATGGAGTCA 57.761 34.615 0.00 0.00 0.00 3.41
5628 10378 8.138712 AGTAAGATAAGAATTCGATGGAGTCAC 58.861 37.037 0.00 0.00 0.00 3.67
5629 10379 5.524284 AGATAAGAATTCGATGGAGTCACG 58.476 41.667 0.00 0.00 0.00 4.35
5630 10380 2.586258 AGAATTCGATGGAGTCACGG 57.414 50.000 0.00 0.00 0.00 4.94
5635 10385 1.064946 CGATGGAGTCACGGAGAGC 59.935 63.158 0.00 0.00 0.00 4.09
5637 10387 2.945398 GATGGAGTCACGGAGAGCGC 62.945 65.000 0.00 0.00 0.00 5.92
5644 10394 1.741401 CACGGAGAGCGCAATGGAA 60.741 57.895 11.47 0.00 0.00 3.53
5677 10445 0.179134 CTACAGTACTGTGCTCCGCC 60.179 60.000 33.77 0.00 44.63 6.13
5738 10507 1.889829 CGGGCTCAAGTAGGATAGGAG 59.110 57.143 0.00 0.00 0.00 3.69
5739 10508 2.753507 CGGGCTCAAGTAGGATAGGAGT 60.754 54.545 0.00 0.00 0.00 3.85
5740 10509 3.498121 CGGGCTCAAGTAGGATAGGAGTA 60.498 52.174 0.00 0.00 0.00 2.59
5741 10510 4.679331 GGGCTCAAGTAGGATAGGAGTAT 58.321 47.826 0.00 0.00 0.00 2.12
5742 10511 5.573090 CGGGCTCAAGTAGGATAGGAGTATA 60.573 48.000 0.00 0.00 0.00 1.47
5743 10512 5.889289 GGGCTCAAGTAGGATAGGAGTATAG 59.111 48.000 0.00 0.00 0.00 1.31
5744 10513 5.889289 GGCTCAAGTAGGATAGGAGTATAGG 59.111 48.000 0.00 0.00 0.00 2.57
5745 10514 6.297126 GGCTCAAGTAGGATAGGAGTATAGGA 60.297 46.154 0.00 0.00 0.00 2.94
5746 10515 6.600427 GCTCAAGTAGGATAGGAGTATAGGAC 59.400 46.154 0.00 0.00 0.00 3.85
5747 10516 7.529901 GCTCAAGTAGGATAGGAGTATAGGACT 60.530 44.444 0.00 0.00 42.90 3.85
5755 10524 3.918134 AGTATAGGACTCCACCGCA 57.082 52.632 0.00 0.00 29.95 5.69
5756 10525 1.400737 AGTATAGGACTCCACCGCAC 58.599 55.000 0.00 0.00 29.95 5.34
5757 10526 1.108776 GTATAGGACTCCACCGCACA 58.891 55.000 0.00 0.00 34.73 4.57
5758 10527 1.687123 GTATAGGACTCCACCGCACAT 59.313 52.381 0.00 0.00 34.73 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.738998 CAGGCGCCATTGTCCCCA 62.739 66.667 31.54 0.00 0.00 4.96
48 49 1.383803 GACAGAGATGGAGGCCCCT 60.384 63.158 0.00 0.00 35.38 4.79
50 51 2.818132 CGACAGAGATGGAGGCCC 59.182 66.667 0.00 0.00 0.00 5.80
76 77 1.448540 CACATCCTCCTCGTGTGGC 60.449 63.158 0.00 0.00 39.54 5.01
81 82 3.461773 CCGGCACATCCTCCTCGT 61.462 66.667 0.00 0.00 0.00 4.18
112 113 1.244019 GCAAATTCTCCCTGTGGCGT 61.244 55.000 0.00 0.00 0.00 5.68
117 118 1.000896 CGGGGCAAATTCTCCCTGT 60.001 57.895 13.20 0.00 42.67 4.00
120 121 3.518068 CGCGGGGCAAATTCTCCC 61.518 66.667 0.00 6.45 41.87 4.30
135 136 1.621107 CAAAGATGACATGCAACCGC 58.379 50.000 0.00 0.00 39.24 5.68
148 149 0.962356 CAGAACCTGCCGGCAAAGAT 60.962 55.000 32.09 19.36 0.00 2.40
159 160 1.302832 GGTGGTCCAGCAGAACCTG 60.303 63.158 16.35 0.00 34.12 4.00
161 162 0.890996 CTTGGTGGTCCAGCAGAACC 60.891 60.000 22.31 5.46 45.22 3.62
162 163 0.179018 ACTTGGTGGTCCAGCAGAAC 60.179 55.000 22.31 0.00 45.22 3.01
163 164 0.550914 AACTTGGTGGTCCAGCAGAA 59.449 50.000 22.31 9.35 45.22 3.02
165 166 2.154462 CTAAACTTGGTGGTCCAGCAG 58.846 52.381 22.31 18.10 45.22 4.24
166 167 1.817740 GCTAAACTTGGTGGTCCAGCA 60.818 52.381 19.89 19.89 45.22 4.41
167 168 0.881796 GCTAAACTTGGTGGTCCAGC 59.118 55.000 14.43 14.43 45.22 4.85
168 169 1.156736 CGCTAAACTTGGTGGTCCAG 58.843 55.000 0.00 0.00 45.22 3.86
169 170 0.759959 TCGCTAAACTTGGTGGTCCA 59.240 50.000 0.00 0.00 42.66 4.02
170 171 1.886886 TTCGCTAAACTTGGTGGTCC 58.113 50.000 0.00 0.00 0.00 4.46
171 172 3.365969 CCAATTCGCTAAACTTGGTGGTC 60.366 47.826 0.00 0.00 34.69 4.02
172 173 2.556622 CCAATTCGCTAAACTTGGTGGT 59.443 45.455 0.00 0.00 34.69 4.16
173 174 3.216147 CCAATTCGCTAAACTTGGTGG 57.784 47.619 0.00 0.00 34.69 4.61
176 177 4.237349 ACAACCAATTCGCTAAACTTGG 57.763 40.909 2.62 2.62 43.06 3.61
177 178 5.997385 AGTACAACCAATTCGCTAAACTTG 58.003 37.500 0.00 0.00 0.00 3.16
179 180 5.529800 ACAAGTACAACCAATTCGCTAAACT 59.470 36.000 0.00 0.00 0.00 2.66
180 181 5.623673 CACAAGTACAACCAATTCGCTAAAC 59.376 40.000 0.00 0.00 0.00 2.01
181 182 5.278071 CCACAAGTACAACCAATTCGCTAAA 60.278 40.000 0.00 0.00 0.00 1.85
187 429 3.886505 TGTCCCACAAGTACAACCAATTC 59.113 43.478 0.00 0.00 0.00 2.17
237 479 3.950861 CTGGCCTCCTCCCTTCCCA 62.951 68.421 3.32 0.00 0.00 4.37
247 489 2.041265 TCCCCTCTTCTGGCCTCC 59.959 66.667 3.32 0.00 0.00 4.30
253 495 2.430610 CCGCCTCTCCCCTCTTCTG 61.431 68.421 0.00 0.00 0.00 3.02
272 514 0.918983 CTCCATCACCAAGGGCCTAA 59.081 55.000 6.41 0.00 0.00 2.69
277 519 0.391661 CGTGTCTCCATCACCAAGGG 60.392 60.000 0.00 0.00 32.86 3.95
285 527 0.872021 GGCATCGACGTGTCTCCATC 60.872 60.000 0.00 0.00 0.00 3.51
290 532 3.356639 ATGCGGCATCGACGTGTCT 62.357 57.895 10.23 0.00 35.91 3.41
312 554 3.134127 GTGGCTGTTCGGATGGCC 61.134 66.667 0.00 0.00 44.31 5.36
323 565 2.552315 ACCTGTTCATTAAACGTGGCTG 59.448 45.455 0.00 0.00 41.02 4.85
324 566 2.552315 CACCTGTTCATTAAACGTGGCT 59.448 45.455 0.00 0.00 41.02 4.75
326 568 2.882137 ACCACCTGTTCATTAAACGTGG 59.118 45.455 11.18 11.18 46.56 4.94
328 570 5.277442 CGTTAACCACCTGTTCATTAAACGT 60.277 40.000 0.00 0.00 41.02 3.99
329 571 5.141568 CGTTAACCACCTGTTCATTAAACG 58.858 41.667 0.00 0.00 41.02 3.60
330 572 5.454520 CCGTTAACCACCTGTTCATTAAAC 58.545 41.667 0.00 0.00 38.42 2.01
331 573 4.519730 CCCGTTAACCACCTGTTCATTAAA 59.480 41.667 0.00 0.00 38.42 1.52
360 605 4.746535 TTAGTTATGGACGAATGAGGCA 57.253 40.909 0.00 0.00 0.00 4.75
364 609 7.827236 AGTTTCCAATTAGTTATGGACGAATGA 59.173 33.333 0.00 0.00 45.14 2.57
367 612 6.311935 CGAGTTTCCAATTAGTTATGGACGAA 59.688 38.462 0.00 0.00 45.14 3.85
377 622 3.326880 ACACCTCCGAGTTTCCAATTAGT 59.673 43.478 0.00 0.00 0.00 2.24
378 623 3.684788 CACACCTCCGAGTTTCCAATTAG 59.315 47.826 0.00 0.00 0.00 1.73
390 635 1.946984 AGGGATTAACACACCTCCGA 58.053 50.000 0.00 0.00 0.00 4.55
405 650 4.706476 CACTAGAATTGCCATCAAAAGGGA 59.294 41.667 0.00 0.00 35.56 4.20
410 655 5.538053 TGAAACCACTAGAATTGCCATCAAA 59.462 36.000 0.00 0.00 35.56 2.69
418 663 7.424803 TGTTGATTGTGAAACCACTAGAATTG 58.575 34.615 0.00 0.00 35.63 2.32
428 673 7.202526 TCTTGAATCTTGTTGATTGTGAAACC 58.797 34.615 0.00 0.00 44.70 3.27
504 749 9.314321 AGACGATACGACATCTTTGATTTTTAT 57.686 29.630 0.00 0.00 0.00 1.40
506 751 7.596749 AGACGATACGACATCTTTGATTTTT 57.403 32.000 0.00 0.00 0.00 1.94
508 753 6.918569 CCTAGACGATACGACATCTTTGATTT 59.081 38.462 0.00 0.00 0.00 2.17
513 758 4.639310 ACACCTAGACGATACGACATCTTT 59.361 41.667 0.00 0.00 0.00 2.52
518 763 1.929169 CGACACCTAGACGATACGACA 59.071 52.381 0.00 0.00 37.60 4.35
520 765 0.933097 GCGACACCTAGACGATACGA 59.067 55.000 0.00 0.00 37.60 3.43
521 766 0.041488 GGCGACACCTAGACGATACG 60.041 60.000 0.00 0.00 37.60 3.06
524 769 2.478890 CCGGCGACACCTAGACGAT 61.479 63.158 9.30 0.00 37.60 3.73
568 813 6.183360 ACAAAAGTCGGGTCATTTCTTTCAAT 60.183 34.615 0.00 0.00 0.00 2.57
574 819 4.086706 AGACAAAAGTCGGGTCATTTCT 57.913 40.909 0.00 0.00 34.04 2.52
575 820 4.995487 AGTAGACAAAAGTCGGGTCATTTC 59.005 41.667 0.00 0.00 34.04 2.17
577 822 4.618920 AGTAGACAAAAGTCGGGTCATT 57.381 40.909 0.00 0.00 34.04 2.57
578 823 5.733620 TTAGTAGACAAAAGTCGGGTCAT 57.266 39.130 0.00 0.00 34.04 3.06
580 825 4.388165 GCTTTAGTAGACAAAAGTCGGGTC 59.612 45.833 0.00 0.00 35.56 4.46
581 826 4.040095 AGCTTTAGTAGACAAAAGTCGGGT 59.960 41.667 0.00 0.00 35.56 5.28
582 827 4.566987 AGCTTTAGTAGACAAAAGTCGGG 58.433 43.478 0.00 0.00 35.56 5.14
583 828 7.647907 TTTAGCTTTAGTAGACAAAAGTCGG 57.352 36.000 0.00 0.00 35.56 4.79
584 829 7.734726 CGTTTTAGCTTTAGTAGACAAAAGTCG 59.265 37.037 0.00 0.00 35.56 4.18
585 830 7.529854 GCGTTTTAGCTTTAGTAGACAAAAGTC 59.470 37.037 0.00 0.00 35.56 3.01
586 831 7.011669 TGCGTTTTAGCTTTAGTAGACAAAAGT 59.988 33.333 0.00 0.00 35.56 2.66
587 832 7.349711 TGCGTTTTAGCTTTAGTAGACAAAAG 58.650 34.615 0.00 0.00 38.13 2.27
588 833 7.249186 TGCGTTTTAGCTTTAGTAGACAAAA 57.751 32.000 0.00 0.00 38.13 2.44
589 834 6.565247 GCTGCGTTTTAGCTTTAGTAGACAAA 60.565 38.462 0.00 0.00 38.14 2.83
590 835 5.107220 GCTGCGTTTTAGCTTTAGTAGACAA 60.107 40.000 0.00 0.00 38.14 3.18
591 836 4.387862 GCTGCGTTTTAGCTTTAGTAGACA 59.612 41.667 0.00 0.00 38.14 3.41
592 837 4.387862 TGCTGCGTTTTAGCTTTAGTAGAC 59.612 41.667 0.00 0.00 41.66 2.59
593 838 4.387862 GTGCTGCGTTTTAGCTTTAGTAGA 59.612 41.667 0.00 0.00 41.66 2.59
594 839 4.389077 AGTGCTGCGTTTTAGCTTTAGTAG 59.611 41.667 0.00 0.00 41.66 2.57
595 840 4.312443 AGTGCTGCGTTTTAGCTTTAGTA 58.688 39.130 0.00 0.00 41.66 1.82
596 841 3.139077 AGTGCTGCGTTTTAGCTTTAGT 58.861 40.909 0.00 0.00 41.66 2.24
597 842 3.813529 AGTGCTGCGTTTTAGCTTTAG 57.186 42.857 0.00 0.00 41.66 1.85
598 843 3.813166 AGAAGTGCTGCGTTTTAGCTTTA 59.187 39.130 0.00 0.00 41.66 1.85
599 844 2.618709 AGAAGTGCTGCGTTTTAGCTTT 59.381 40.909 0.00 0.00 41.66 3.51
600 845 2.031682 CAGAAGTGCTGCGTTTTAGCTT 60.032 45.455 0.00 0.00 41.66 3.74
601 846 1.532868 CAGAAGTGCTGCGTTTTAGCT 59.467 47.619 0.00 0.00 41.66 3.32
602 847 1.531149 TCAGAAGTGCTGCGTTTTAGC 59.469 47.619 0.00 0.00 44.52 3.09
603 848 3.878086 TTCAGAAGTGCTGCGTTTTAG 57.122 42.857 0.00 0.00 44.52 1.85
604 849 4.624336 TTTTCAGAAGTGCTGCGTTTTA 57.376 36.364 0.00 0.00 44.52 1.52
605 850 3.502191 TTTTCAGAAGTGCTGCGTTTT 57.498 38.095 0.00 0.00 44.52 2.43
606 851 3.502191 TTTTTCAGAAGTGCTGCGTTT 57.498 38.095 0.00 0.00 44.52 3.60
694 940 1.812324 CGTGGTACTTCCTGGTTTGCA 60.812 52.381 0.00 0.00 37.07 4.08
774 1033 5.836821 AGAAGAGAAACACCTCCAAAAAC 57.163 39.130 0.00 0.00 33.76 2.43
778 1037 3.716872 AGGAAGAAGAGAAACACCTCCAA 59.283 43.478 0.00 0.00 33.76 3.53
779 1038 3.318313 AGGAAGAAGAGAAACACCTCCA 58.682 45.455 0.00 0.00 33.76 3.86
780 1039 3.615351 CGAGGAAGAAGAGAAACACCTCC 60.615 52.174 0.00 0.00 39.13 4.30
781 1040 3.580731 CGAGGAAGAAGAGAAACACCTC 58.419 50.000 0.00 0.00 38.99 3.85
782 1041 2.289133 GCGAGGAAGAAGAGAAACACCT 60.289 50.000 0.00 0.00 0.00 4.00
783 1042 2.070028 GCGAGGAAGAAGAGAAACACC 58.930 52.381 0.00 0.00 0.00 4.16
784 1043 2.070028 GGCGAGGAAGAAGAGAAACAC 58.930 52.381 0.00 0.00 0.00 3.32
1032 1298 1.272037 CCCTAGGGTTGCGGGTTTAAA 60.272 52.381 20.88 0.00 33.16 1.52
1180 1446 4.632153 ACATCGGCATGTACTAAGAATCC 58.368 43.478 0.00 0.00 41.81 3.01
1245 1511 3.052082 CACGGGAAGGCACTGCAG 61.052 66.667 13.48 13.48 40.86 4.41
1246 1512 3.414136 AACACGGGAAGGCACTGCA 62.414 57.895 2.82 0.00 40.86 4.41
1250 1516 1.441732 AAACGAACACGGGAAGGCAC 61.442 55.000 0.00 0.00 0.00 5.01
1253 1519 0.865769 CTCAAACGAACACGGGAAGG 59.134 55.000 0.00 0.00 0.00 3.46
1335 1605 6.969993 ACTCTCCTTCAGATTATACAGGAC 57.030 41.667 0.00 0.00 30.20 3.85
1341 1611 7.309255 GGCGTCATAACTCTCCTTCAGATTATA 60.309 40.741 0.00 0.00 0.00 0.98
1349 1619 2.961526 TGGCGTCATAACTCTCCTTC 57.038 50.000 0.00 0.00 0.00 3.46
1430 1700 7.212274 AGTCCAAAGAGAAATTTCAACAATGG 58.788 34.615 19.99 20.11 0.00 3.16
1484 1754 4.328440 GCTGCAGCTGTATATATAGCACAC 59.672 45.833 31.33 17.98 42.10 3.82
1608 1878 9.294030 CACTTGCCAGTAAATATTCTGATTTTC 57.706 33.333 5.87 0.00 34.02 2.29
1645 1915 5.335127 GCAATTGTTACAATAGACCTGCAG 58.665 41.667 20.19 6.78 0.00 4.41
1669 1939 6.072673 CCTGGGAACTTGTTAGTAATGTCAAC 60.073 42.308 0.00 0.00 33.17 3.18
1805 2076 2.567985 TCACGAGAACAAAAGGGGAAC 58.432 47.619 0.00 0.00 0.00 3.62
1833 2104 3.982516 AGCTTCCACCTAGACACAGATA 58.017 45.455 0.00 0.00 0.00 1.98
1838 2109 6.206829 ACATTTTAAAGCTTCCACCTAGACAC 59.793 38.462 0.00 0.00 0.00 3.67
1956 2227 8.488651 TGGAAAAGGAAATAGAGATTCGTAAC 57.511 34.615 0.00 0.00 0.00 2.50
2061 2334 9.722056 GCAATAGATTCTTTACCATGTAAAGTG 57.278 33.333 20.28 13.18 36.30 3.16
2474 3041 4.612712 CGATGTTACATGTTTGTGTGGTCC 60.613 45.833 2.30 0.00 36.53 4.46
2841 3417 9.064706 AGCTGAACATATTGATTAGAGAAATGG 57.935 33.333 0.00 0.00 0.00 3.16
2987 3564 9.563898 GTTGGGTAAAATAACTTGCTATAACAC 57.436 33.333 0.00 0.00 0.00 3.32
3029 3606 2.957402 AGAGCCATCACCTGAAACAA 57.043 45.000 0.00 0.00 0.00 2.83
3153 3731 1.745653 CGCCCTTCAGAAATTCCCTTC 59.254 52.381 0.00 0.00 0.00 3.46
3497 4077 8.800972 CCAAACGATGAAATGTTAAATCAGATG 58.199 33.333 0.00 0.00 0.00 2.90
3514 4094 3.189702 ACGTAATTTCACCCCAAACGATG 59.810 43.478 0.00 0.00 33.40 3.84
3655 4235 6.092748 GTGGCAAAGATGGTTATAACACAAG 58.907 40.000 17.16 1.96 0.00 3.16
3677 4257 6.525628 CAGCTACTAGAATGTGCAATTTTGTG 59.474 38.462 0.00 0.00 0.00 3.33
3783 4363 5.330233 GGGGGAAAGATTTTAGGAGAACAA 58.670 41.667 0.00 0.00 0.00 2.83
3874 4713 7.350744 TGAACTAGCAATGCATGGATATTTT 57.649 32.000 8.35 0.00 0.00 1.82
3881 4720 4.445452 AAGTTGAACTAGCAATGCATGG 57.555 40.909 8.35 0.00 0.00 3.66
3937 4776 2.743636 AGATGCGAAAAGTTCTCCGA 57.256 45.000 0.00 0.00 0.00 4.55
3968 4807 0.521735 GTCCATCAAGGCACGGAAAC 59.478 55.000 0.00 0.00 37.29 2.78
4149 5234 6.207614 AGGTAAAGTCTCATTTTCTTGCTTCC 59.792 38.462 0.00 0.00 0.00 3.46
4155 5240 8.437274 TCTAGGAGGTAAAGTCTCATTTTCTT 57.563 34.615 0.00 0.00 33.18 2.52
4156 5241 8.437274 TTCTAGGAGGTAAAGTCTCATTTTCT 57.563 34.615 0.00 0.00 33.18 2.52
4157 5242 7.766738 CCTTCTAGGAGGTAAAGTCTCATTTTC 59.233 40.741 9.21 0.00 37.67 2.29
4158 5243 7.458170 TCCTTCTAGGAGGTAAAGTCTCATTTT 59.542 37.037 17.20 0.00 40.06 1.82
4159 5244 6.960542 TCCTTCTAGGAGGTAAAGTCTCATTT 59.039 38.462 17.20 0.00 40.06 2.32
4160 5245 6.503944 TCCTTCTAGGAGGTAAAGTCTCATT 58.496 40.000 17.20 0.00 40.06 2.57
4161 5246 6.093617 TCCTTCTAGGAGGTAAAGTCTCAT 57.906 41.667 17.20 0.00 40.06 2.90
4162 5247 5.531753 TCCTTCTAGGAGGTAAAGTCTCA 57.468 43.478 17.20 0.00 40.06 3.27
4175 5260 7.574607 AGGGTTTATGTTACAATCCTTCTAGG 58.425 38.462 0.00 0.00 36.46 3.02
4178 5263 9.004231 AGATAGGGTTTATGTTACAATCCTTCT 57.996 33.333 0.00 0.00 0.00 2.85
4179 5264 9.628500 AAGATAGGGTTTATGTTACAATCCTTC 57.372 33.333 0.00 0.00 0.00 3.46
4180 5265 9.990868 AAAGATAGGGTTTATGTTACAATCCTT 57.009 29.630 0.00 0.00 0.00 3.36
4181 5266 9.990868 AAAAGATAGGGTTTATGTTACAATCCT 57.009 29.630 0.00 0.00 0.00 3.24
4196 5281 8.512138 CGTTTCTTTGTATTGAAAAGATAGGGT 58.488 33.333 0.00 0.00 41.86 4.34
4197 5282 7.484959 GCGTTTCTTTGTATTGAAAAGATAGGG 59.515 37.037 0.00 0.00 41.86 3.53
4198 5283 8.020819 TGCGTTTCTTTGTATTGAAAAGATAGG 58.979 33.333 0.00 3.08 41.86 2.57
4199 5284 8.948853 TGCGTTTCTTTGTATTGAAAAGATAG 57.051 30.769 0.00 0.00 41.86 2.08
4200 5285 9.393249 CTTGCGTTTCTTTGTATTGAAAAGATA 57.607 29.630 0.00 0.00 41.86 1.98
4201 5286 8.134895 TCTTGCGTTTCTTTGTATTGAAAAGAT 58.865 29.630 0.00 0.00 41.86 2.40
4202 5287 7.476667 TCTTGCGTTTCTTTGTATTGAAAAGA 58.523 30.769 0.00 0.00 40.88 2.52
4203 5288 7.678194 TCTTGCGTTTCTTTGTATTGAAAAG 57.322 32.000 0.00 0.00 34.52 2.27
4204 5289 8.641499 ATTCTTGCGTTTCTTTGTATTGAAAA 57.359 26.923 0.00 0.00 34.52 2.29
4205 5290 8.134895 AGATTCTTGCGTTTCTTTGTATTGAAA 58.865 29.630 0.00 0.00 0.00 2.69
4206 5291 7.648142 AGATTCTTGCGTTTCTTTGTATTGAA 58.352 30.769 0.00 0.00 0.00 2.69
4207 5292 7.173218 AGAGATTCTTGCGTTTCTTTGTATTGA 59.827 33.333 0.00 0.00 0.00 2.57
4208 5293 7.301054 AGAGATTCTTGCGTTTCTTTGTATTG 58.699 34.615 0.00 0.00 0.00 1.90
4209 5294 7.440523 AGAGATTCTTGCGTTTCTTTGTATT 57.559 32.000 0.00 0.00 0.00 1.89
4210 5295 7.440523 AAGAGATTCTTGCGTTTCTTTGTAT 57.559 32.000 0.00 0.00 34.98 2.29
4211 5296 6.861065 AAGAGATTCTTGCGTTTCTTTGTA 57.139 33.333 0.00 0.00 34.98 2.41
4212 5297 5.757850 AAGAGATTCTTGCGTTTCTTTGT 57.242 34.783 0.00 0.00 34.98 2.83
4213 5298 6.430048 CAAAGAGATTCTTGCGTTTCTTTG 57.570 37.500 9.51 9.51 42.56 2.77
4214 5299 4.978580 GCAAAGAGATTCTTGCGTTTCTTT 59.021 37.500 0.00 0.00 36.71 2.52
4215 5300 4.540824 GCAAAGAGATTCTTGCGTTTCTT 58.459 39.130 0.00 0.00 36.71 2.52
4216 5301 3.364366 CGCAAAGAGATTCTTGCGTTTCT 60.364 43.478 18.53 0.00 42.83 2.52
4217 5302 2.904932 CGCAAAGAGATTCTTGCGTTTC 59.095 45.455 18.53 0.00 42.83 2.78
4218 5303 2.921126 CGCAAAGAGATTCTTGCGTTT 58.079 42.857 18.53 2.10 42.83 3.60
4219 5304 2.601481 CGCAAAGAGATTCTTGCGTT 57.399 45.000 18.53 0.00 42.83 4.84
4222 5307 4.540824 AGAAAACGCAAAGAGATTCTTGC 58.459 39.130 0.00 0.00 36.71 4.01
4223 5308 6.430048 CAAGAAAACGCAAAGAGATTCTTG 57.570 37.500 10.52 10.52 43.91 3.02
4224 5309 6.377327 TCAAGAAAACGCAAAGAGATTCTT 57.623 33.333 0.00 0.00 38.59 2.52
4225 5310 6.377327 TTCAAGAAAACGCAAAGAGATTCT 57.623 33.333 0.00 0.00 0.00 2.40
4226 5311 7.449934 TTTTCAAGAAAACGCAAAGAGATTC 57.550 32.000 3.98 0.00 35.57 2.52
4227 5312 7.826260 TTTTTCAAGAAAACGCAAAGAGATT 57.174 28.000 7.44 0.00 39.70 2.40
4250 5335 8.889717 TGATACAGTCTCGTTTTCTTTCTTTTT 58.110 29.630 0.00 0.00 0.00 1.94
4251 5336 8.433421 TGATACAGTCTCGTTTTCTTTCTTTT 57.567 30.769 0.00 0.00 0.00 2.27
4252 5337 7.711339 ACTGATACAGTCTCGTTTTCTTTCTTT 59.289 33.333 0.00 0.00 41.21 2.52
4253 5338 7.210873 ACTGATACAGTCTCGTTTTCTTTCTT 58.789 34.615 0.00 0.00 41.21 2.52
4254 5339 6.750148 ACTGATACAGTCTCGTTTTCTTTCT 58.250 36.000 0.00 0.00 41.21 2.52
4415 5521 3.748083 AGCGTGAATGGCTGATATCAAT 58.252 40.909 6.90 0.00 39.77 2.57
4442 5549 5.637006 AAGTGCAAGTGTGTAAAGACAAA 57.363 34.783 0.00 0.00 37.31 2.83
4455 5562 4.990426 GCCAATCAAATACAAAGTGCAAGT 59.010 37.500 0.00 0.00 0.00 3.16
4456 5563 4.389687 GGCCAATCAAATACAAAGTGCAAG 59.610 41.667 0.00 0.00 0.00 4.01
4459 5566 4.192429 AGGCCAATCAAATACAAAGTGC 57.808 40.909 5.01 0.00 0.00 4.40
4476 5584 2.014068 GCAGAGACACATGGTTAGGCC 61.014 57.143 0.00 0.00 37.90 5.19
4498 5606 4.514816 TGAATACACCTGTGAATGTGTGTG 59.485 41.667 3.94 0.00 44.89 3.82
4504 5612 6.205464 ACTGAAGTTGAATACACCTGTGAATG 59.795 38.462 3.94 0.00 0.00 2.67
4505 5613 6.299141 ACTGAAGTTGAATACACCTGTGAAT 58.701 36.000 3.94 0.00 0.00 2.57
4506 5614 5.680619 ACTGAAGTTGAATACACCTGTGAA 58.319 37.500 3.94 0.00 0.00 3.18
4507 5615 5.290493 ACTGAAGTTGAATACACCTGTGA 57.710 39.130 3.94 0.00 0.00 3.58
4508 5616 4.150627 CGACTGAAGTTGAATACACCTGTG 59.849 45.833 0.00 0.00 0.00 3.66
4551 5659 2.599082 GCCGAACAAGAAGACAGATACG 59.401 50.000 0.00 0.00 0.00 3.06
4557 5665 2.613026 TGAAGCCGAACAAGAAGACA 57.387 45.000 0.00 0.00 0.00 3.41
4581 5689 1.821136 CCAAGGAAGAATGCAAGGGAC 59.179 52.381 0.00 0.00 0.00 4.46
4599 5707 3.181479 GCATCATCACTTACGTAGACCCA 60.181 47.826 0.00 0.00 0.00 4.51
4626 5734 2.033065 CGAGATATCTTGTTGCTGCTGC 60.033 50.000 6.70 8.89 40.20 5.25
4627 5735 3.244814 GTCGAGATATCTTGTTGCTGCTG 59.755 47.826 17.85 0.00 0.00 4.41
4628 5736 3.452474 GTCGAGATATCTTGTTGCTGCT 58.548 45.455 17.85 0.00 0.00 4.24
4650 5758 0.251916 TCATGGGTTACAAGGCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
4681 5793 2.170187 CCCTGAAATGAGTAGCAGAGCT 59.830 50.000 0.00 0.00 43.41 4.09
4688 5801 3.612860 CGAAACGACCCTGAAATGAGTAG 59.387 47.826 0.00 0.00 0.00 2.57
4691 5804 2.683968 TCGAAACGACCCTGAAATGAG 58.316 47.619 0.00 0.00 0.00 2.90
4692 5805 2.823924 TCGAAACGACCCTGAAATGA 57.176 45.000 0.00 0.00 0.00 2.57
4710 5823 5.473931 ACAGAATGCAGATACACCGATATC 58.526 41.667 0.00 0.00 42.53 1.63
4713 5826 3.722147 GACAGAATGCAGATACACCGAT 58.278 45.455 0.00 0.00 42.53 4.18
4827 5940 2.279517 GCCGTCCTGTGCTATCCG 60.280 66.667 0.00 0.00 0.00 4.18
4830 5943 1.976132 ATGCTGCCGTCCTGTGCTAT 61.976 55.000 0.00 0.00 0.00 2.97
4831 5944 2.578163 GATGCTGCCGTCCTGTGCTA 62.578 60.000 0.00 0.00 0.00 3.49
4832 5945 3.965539 GATGCTGCCGTCCTGTGCT 62.966 63.158 0.00 0.00 0.00 4.40
4833 5946 3.503363 GATGCTGCCGTCCTGTGC 61.503 66.667 0.00 0.00 0.00 4.57
4834 5947 3.190849 CGATGCTGCCGTCCTGTG 61.191 66.667 0.00 0.00 0.00 3.66
4837 5950 3.842923 CTCCGATGCTGCCGTCCT 61.843 66.667 0.00 0.00 0.00 3.85
4839 5952 3.781770 CTCCTCCGATGCTGCCGTC 62.782 68.421 0.00 0.00 0.00 4.79
4875 5988 2.622942 GCCTCAACAACAGTTCCATGAA 59.377 45.455 0.00 0.00 0.00 2.57
4882 5995 0.746659 GCCTTGCCTCAACAACAGTT 59.253 50.000 0.00 0.00 0.00 3.16
4945 6058 1.930908 GATGCCACCACAGAAGCAGC 61.931 60.000 0.00 0.00 38.89 5.25
4981 6104 1.300963 CACCCACCCTGATCACCAG 59.699 63.158 0.00 0.00 42.55 4.00
5000 6127 2.698797 TCCCCAGATAAGAAACTAGCGG 59.301 50.000 0.00 0.00 0.00 5.52
5020 6147 0.869454 CTCGCATTCTCGCTGACCTC 60.869 60.000 0.00 0.00 0.00 3.85
5049 6176 5.463392 GTCAAAAGGAAGGCATGAAGAAAAC 59.537 40.000 0.00 0.00 0.00 2.43
5096 6223 9.706691 GTGCCTACAATGATAATTAGCTAGTAA 57.293 33.333 1.93 0.00 0.00 2.24
5129 6260 1.226491 GCATGGACATCTGCGCAAC 60.226 57.895 13.05 0.44 0.00 4.17
5191 6333 3.447586 AGTTAGCTATGCCAAGAGTTCGA 59.552 43.478 0.00 0.00 0.00 3.71
5232 9456 5.409826 CCTACAGACGAGCTCAAAGATTTTT 59.590 40.000 15.40 0.00 0.00 1.94
5236 9460 2.159170 GCCTACAGACGAGCTCAAAGAT 60.159 50.000 15.40 0.00 0.00 2.40
5237 9461 1.202582 GCCTACAGACGAGCTCAAAGA 59.797 52.381 15.40 0.00 0.00 2.52
5238 9462 1.634702 GCCTACAGACGAGCTCAAAG 58.365 55.000 15.40 0.00 0.00 2.77
5239 9463 0.109272 CGCCTACAGACGAGCTCAAA 60.109 55.000 15.40 0.00 0.00 2.69
5240 9464 1.506718 CGCCTACAGACGAGCTCAA 59.493 57.895 15.40 0.00 0.00 3.02
5241 9465 2.407428 CCGCCTACAGACGAGCTCA 61.407 63.158 15.40 0.00 0.00 4.26
5242 9466 2.409651 CCGCCTACAGACGAGCTC 59.590 66.667 2.73 2.73 0.00 4.09
5244 9468 2.907897 ATTGCCGCCTACAGACGAGC 62.908 60.000 0.00 0.00 0.00 5.03
5245 9469 1.141881 ATTGCCGCCTACAGACGAG 59.858 57.895 0.00 0.00 0.00 4.18
5282 9523 1.153745 CTCCTACGCTCGCTTTGCT 60.154 57.895 0.00 0.00 0.00 3.91
5284 9525 1.416813 CTGCTCCTACGCTCGCTTTG 61.417 60.000 0.00 0.00 0.00 2.77
5285 9526 1.153745 CTGCTCCTACGCTCGCTTT 60.154 57.895 0.00 0.00 0.00 3.51
5286 9527 2.492090 CTGCTCCTACGCTCGCTT 59.508 61.111 0.00 0.00 0.00 4.68
5287 9528 4.200283 GCTGCTCCTACGCTCGCT 62.200 66.667 0.00 0.00 0.00 4.93
5309 9599 4.099573 TCGAATGTGGATTCCTACTCCTTC 59.900 45.833 3.95 5.47 35.43 3.46
5310 9600 4.030913 TCGAATGTGGATTCCTACTCCTT 58.969 43.478 3.95 0.00 35.43 3.36
5311 9601 3.643237 TCGAATGTGGATTCCTACTCCT 58.357 45.455 3.95 0.00 35.43 3.69
5312 9602 4.310769 CATCGAATGTGGATTCCTACTCC 58.689 47.826 3.95 0.00 35.43 3.85
5313 9603 4.310769 CCATCGAATGTGGATTCCTACTC 58.689 47.826 3.95 0.00 39.12 2.59
5314 9604 3.495100 GCCATCGAATGTGGATTCCTACT 60.495 47.826 7.74 0.00 39.12 2.57
5315 9605 2.808543 GCCATCGAATGTGGATTCCTAC 59.191 50.000 7.74 1.65 39.12 3.18
5316 9606 2.224523 GGCCATCGAATGTGGATTCCTA 60.225 50.000 7.74 0.00 39.12 2.94
5317 9607 1.477558 GGCCATCGAATGTGGATTCCT 60.478 52.381 7.74 0.00 39.12 3.36
5318 9608 0.954452 GGCCATCGAATGTGGATTCC 59.046 55.000 7.74 0.00 39.12 3.01
5319 9609 0.588252 CGGCCATCGAATGTGGATTC 59.412 55.000 7.74 0.00 42.43 2.52
5320 9610 1.447317 GCGGCCATCGAATGTGGATT 61.447 55.000 7.74 0.00 42.43 3.01
5321 9611 1.893808 GCGGCCATCGAATGTGGAT 60.894 57.895 7.74 0.00 42.43 3.41
5322 9612 2.513666 GCGGCCATCGAATGTGGA 60.514 61.111 7.74 0.00 42.43 4.02
5323 9613 3.585990 GGCGGCCATCGAATGTGG 61.586 66.667 15.62 0.00 42.43 4.17
5324 9614 3.585990 GGGCGGCCATCGAATGTG 61.586 66.667 25.33 0.00 42.43 3.21
5453 9808 2.049063 GGTAGCATAGCTCGGCCG 60.049 66.667 22.12 22.12 40.44 6.13
5498 9853 1.732683 CGTGGTTTGAAATGGGCGC 60.733 57.895 0.00 0.00 0.00 6.53
5499 9854 0.386731 GACGTGGTTTGAAATGGGCG 60.387 55.000 0.00 0.00 0.00 6.13
5524 10258 2.152699 GTGCATCGTCGTCGTCCTG 61.153 63.158 1.33 0.52 38.33 3.86
5529 10273 1.453603 CGTACTGTGCATCGTCGTCG 61.454 60.000 0.00 0.00 38.55 5.12
5532 10276 0.247934 TAGCGTACTGTGCATCGTCG 60.248 55.000 0.00 0.00 33.85 5.12
5535 10279 1.909376 AGTTAGCGTACTGTGCATCG 58.091 50.000 0.00 0.00 33.85 3.84
5599 10346 8.145122 ACTCCATCGAATTCTTATCTTACTTCC 58.855 37.037 3.52 0.00 0.00 3.46
5600 10347 9.187455 GACTCCATCGAATTCTTATCTTACTTC 57.813 37.037 3.52 0.00 0.00 3.01
5607 10357 4.681942 CCGTGACTCCATCGAATTCTTATC 59.318 45.833 3.52 0.00 0.00 1.75
5620 10370 3.749064 GCGCTCTCCGTGACTCCA 61.749 66.667 0.00 0.00 39.71 3.86
5625 10375 2.125552 CCATTGCGCTCTCCGTGA 60.126 61.111 9.73 0.00 39.71 4.35
5626 10376 1.741401 TTCCATTGCGCTCTCCGTG 60.741 57.895 9.73 0.00 39.71 4.94
5627 10377 1.741770 GTTCCATTGCGCTCTCCGT 60.742 57.895 9.73 0.00 39.71 4.69
5628 10378 1.298157 TTGTTCCATTGCGCTCTCCG 61.298 55.000 9.73 0.00 40.75 4.63
5629 10379 0.169009 GTTGTTCCATTGCGCTCTCC 59.831 55.000 9.73 0.00 0.00 3.71
5630 10380 0.179215 CGTTGTTCCATTGCGCTCTC 60.179 55.000 9.73 0.00 0.00 3.20
5635 10385 2.991190 AGTACTACGTTGTTCCATTGCG 59.009 45.455 8.18 0.00 0.00 4.85
5637 10387 7.731556 GTAGTAGTACTACGTTGTTCCATTG 57.268 40.000 23.87 0.00 41.27 2.82
5655 10405 3.677190 CGGAGCACAGTACTGTAGTAG 57.323 52.381 27.48 16.33 42.83 2.57
5677 10445 1.147473 TGAAGTACACATGCACTGCG 58.853 50.000 0.00 0.00 0.00 5.18
5721 10489 6.600427 GTCCTATACTCCTATCCTACTTGAGC 59.400 46.154 0.00 0.00 0.00 4.26
5738 10507 1.108776 TGTGCGGTGGAGTCCTATAC 58.891 55.000 11.33 0.00 0.00 1.47
5739 10508 2.082140 ATGTGCGGTGGAGTCCTATA 57.918 50.000 11.33 0.00 0.00 1.31
5740 10509 2.916355 ATGTGCGGTGGAGTCCTAT 58.084 52.632 11.33 0.00 0.00 2.57
5741 10510 4.453454 ATGTGCGGTGGAGTCCTA 57.547 55.556 11.33 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.