Multiple sequence alignment - TraesCS2A01G184700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G184700 chr2A 100.000 5381 0 0 1 5381 144944990 144950370 0.000000e+00 9937.0
1 TraesCS2A01G184700 chr2A 95.420 131 6 0 313 443 194169801 194169671 5.460000e-50 209.0
2 TraesCS2A01G184700 chr2D 91.623 3020 109 62 1770 4707 155415000 155412043 0.000000e+00 4043.0
3 TraesCS2A01G184700 chr2D 88.983 1062 40 24 437 1463 155416367 155415348 0.000000e+00 1242.0
4 TraesCS2A01G184700 chr2D 89.007 282 18 8 4940 5210 155411565 155411286 2.400000e-88 337.0
5 TraesCS2A01G184700 chr2D 90.148 203 10 5 4736 4938 155412043 155411851 6.920000e-64 255.0
6 TraesCS2A01G184700 chr2D 89.773 176 16 2 5207 5381 155411101 155410927 1.950000e-54 224.0
7 TraesCS2A01G184700 chr2D 80.569 211 25 7 2 209 155416615 155416418 1.210000e-31 148.0
8 TraesCS2A01G184700 chr2D 98.077 52 1 0 1692 1743 155415124 155415073 2.060000e-14 91.6
9 TraesCS2A01G184700 chr2D 91.837 49 1 1 1742 1790 155415040 155414995 1.250000e-06 65.8
10 TraesCS2A01G184700 chr2B 90.279 3086 148 63 1770 4773 212311573 212308558 0.000000e+00 3897.0
11 TraesCS2A01G184700 chr2B 87.388 1340 64 37 437 1743 212312917 212311650 0.000000e+00 1441.0
12 TraesCS2A01G184700 chr2B 88.810 420 24 6 4801 5214 212308489 212308087 1.350000e-135 494.0
13 TraesCS2A01G184700 chr2B 87.440 207 15 3 4 209 212313187 212312991 1.510000e-55 228.0
14 TraesCS2A01G184700 chr2B 91.837 49 1 1 1742 1790 212311613 212311568 1.250000e-06 65.8
15 TraesCS2A01G184700 chr5D 88.976 381 41 1 3998 4378 509569843 509570222 2.270000e-128 470.0
16 TraesCS2A01G184700 chr5A 88.918 379 41 1 4000 4378 637058774 637059151 2.940000e-127 466.0
17 TraesCS2A01G184700 chr5A 96.063 127 5 0 313 439 583158511 583158637 1.960000e-49 207.0
18 TraesCS2A01G184700 chr5B 88.859 377 41 1 4002 4378 640403584 640403959 3.800000e-126 462.0
19 TraesCS2A01G184700 chr5B 91.549 142 10 1 298 439 468837113 468836974 1.530000e-45 195.0
20 TraesCS2A01G184700 chr7A 94.697 132 7 0 312 443 462339185 462339316 7.060000e-49 206.0
21 TraesCS2A01G184700 chrUn 94.697 132 6 1 312 442 339593968 339593837 2.540000e-48 204.0
22 TraesCS2A01G184700 chr6A 94.656 131 7 0 309 439 578700015 578699885 2.540000e-48 204.0
23 TraesCS2A01G184700 chr3A 94.656 131 7 0 313 443 598561951 598561821 2.540000e-48 204.0
24 TraesCS2A01G184700 chr1B 94.656 131 7 0 313 443 372226509 372226379 2.540000e-48 204.0
25 TraesCS2A01G184700 chr4A 93.985 133 8 0 312 444 530173878 530174010 9.140000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G184700 chr2A 144944990 144950370 5380 False 9937.00 9937 100.000000 1 5381 1 chr2A.!!$F1 5380
1 TraesCS2A01G184700 chr2D 155410927 155416615 5688 True 800.80 4043 90.002125 2 5381 8 chr2D.!!$R1 5379
2 TraesCS2A01G184700 chr2B 212308087 212313187 5100 True 1225.16 3897 89.150800 4 5214 5 chr2B.!!$R1 5210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 463 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
818 849 0.251634 TGCAGCGAGAGAGAGAGAGA 59.748 55.0 0.00 0.00 0.00 3.10 F
1489 1559 0.445436 CTTGCTCAAGTGCATCCGTC 59.555 55.0 0.00 0.00 42.96 4.79 F
2582 2747 0.105778 GAGTGAGGGCTGAGGCATAC 59.894 60.0 8.68 3.42 40.87 2.39 F
3539 3749 0.179006 TATGCCTGCCAACACACACA 60.179 50.0 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1662 0.105224 TGGCTCCTTTCAACGTCGAA 59.895 50.0 0.00 0.0 0.00 3.71 R
1869 2010 0.319040 CGCAGTCTATGATGTCCCCG 60.319 60.0 0.00 0.0 0.00 5.73 R
3169 3379 0.254178 AGCACCCTGTTGCCTGATAG 59.746 55.0 0.00 0.0 44.14 2.08 R
3649 3862 0.035630 GGCTGGCAGAAGAGACATGT 60.036 55.0 20.86 0.0 0.00 3.21 R
5031 5625 0.605319 TTGCGATGTGAACTCCACCC 60.605 55.0 0.00 0.0 45.09 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 104 6.683974 AAGACCATATCATCCTTTTTGACG 57.316 37.500 0.00 0.00 0.00 4.35
145 148 5.823209 TCTTCATCTGTAATGTGCATTGG 57.177 39.130 7.60 0.00 32.50 3.16
148 151 6.433716 TCTTCATCTGTAATGTGCATTGGAAA 59.566 34.615 7.60 0.00 32.50 3.13
150 153 4.782019 TCTGTAATGTGCATTGGAAACC 57.218 40.909 7.60 0.00 32.50 3.27
155 158 4.592485 AATGTGCATTGGAAACCGTAAA 57.408 36.364 0.00 0.00 0.00 2.01
158 161 4.135306 TGTGCATTGGAAACCGTAAACTA 58.865 39.130 0.00 0.00 0.00 2.24
189 193 6.663523 AGGGGTGTATCAAAACAAAATCCTAG 59.336 38.462 0.00 0.00 0.00 3.02
191 195 7.342026 GGGGTGTATCAAAACAAAATCCTAGAT 59.658 37.037 0.00 0.00 0.00 1.98
192 196 9.403583 GGGTGTATCAAAACAAAATCCTAGATA 57.596 33.333 0.00 0.00 0.00 1.98
258 262 3.634397 TTGTGCCCTAATCTTCTCAGG 57.366 47.619 0.00 0.00 0.00 3.86
283 311 1.742308 AGGTTGTGCCCTAGGAGAAA 58.258 50.000 11.48 0.00 38.26 2.52
284 312 1.351350 AGGTTGTGCCCTAGGAGAAAC 59.649 52.381 11.48 8.98 38.26 2.78
285 313 1.073284 GGTTGTGCCCTAGGAGAAACA 59.927 52.381 11.48 6.03 0.00 2.83
286 314 2.427506 GTTGTGCCCTAGGAGAAACAG 58.572 52.381 11.48 0.00 0.00 3.16
287 315 0.324943 TGTGCCCTAGGAGAAACAGC 59.675 55.000 11.48 3.39 0.00 4.40
288 316 0.324943 GTGCCCTAGGAGAAACAGCA 59.675 55.000 11.48 6.42 0.00 4.41
289 317 0.615331 TGCCCTAGGAGAAACAGCAG 59.385 55.000 11.48 0.00 0.00 4.24
290 318 0.107459 GCCCTAGGAGAAACAGCAGG 60.107 60.000 11.48 0.00 0.00 4.85
291 319 0.107459 CCCTAGGAGAAACAGCAGGC 60.107 60.000 11.48 0.00 0.00 4.85
292 320 0.460987 CCTAGGAGAAACAGCAGGCG 60.461 60.000 1.05 0.00 0.00 5.52
293 321 0.532573 CTAGGAGAAACAGCAGGCGA 59.467 55.000 0.00 0.00 0.00 5.54
294 322 0.532573 TAGGAGAAACAGCAGGCGAG 59.467 55.000 0.00 0.00 0.00 5.03
295 323 1.743252 GGAGAAACAGCAGGCGAGG 60.743 63.158 0.00 0.00 0.00 4.63
296 324 1.293498 GAGAAACAGCAGGCGAGGA 59.707 57.895 0.00 0.00 0.00 3.71
297 325 1.004440 AGAAACAGCAGGCGAGGAC 60.004 57.895 0.00 0.00 0.00 3.85
298 326 2.357517 AAACAGCAGGCGAGGACG 60.358 61.111 0.00 0.00 42.93 4.79
299 327 3.883744 AAACAGCAGGCGAGGACGG 62.884 63.158 0.00 0.00 40.15 4.79
309 337 4.803426 GAGGACGGGCGCAGAGTG 62.803 72.222 10.83 0.00 0.00 3.51
322 350 2.799371 GAGTGCGTACTCCCTCCG 59.201 66.667 21.57 0.00 46.14 4.63
323 351 2.035312 AGTGCGTACTCCCTCCGT 59.965 61.111 0.00 0.00 28.79 4.69
324 352 1.991099 GAGTGCGTACTCCCTCCGTC 61.991 65.000 21.57 0.00 46.14 4.79
325 353 2.753043 TGCGTACTCCCTCCGTCC 60.753 66.667 0.00 0.00 0.00 4.79
326 354 3.885521 GCGTACTCCCTCCGTCCG 61.886 72.222 0.00 0.00 0.00 4.79
327 355 2.124983 CGTACTCCCTCCGTCCGA 60.125 66.667 0.00 0.00 0.00 4.55
328 356 1.746615 CGTACTCCCTCCGTCCGAA 60.747 63.158 0.00 0.00 0.00 4.30
329 357 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
330 358 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
331 359 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
332 360 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
333 361 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
334 362 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
335 363 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
336 364 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
337 365 2.277084 CCTCCGTCCGAAAATACTTGG 58.723 52.381 0.00 0.00 0.00 3.61
338 366 1.664151 CTCCGTCCGAAAATACTTGGC 59.336 52.381 0.00 0.00 0.00 4.52
339 367 1.002201 TCCGTCCGAAAATACTTGGCA 59.998 47.619 0.00 0.00 0.00 4.92
340 368 2.014128 CCGTCCGAAAATACTTGGCAT 58.986 47.619 0.00 0.00 0.00 4.40
341 369 2.422127 CCGTCCGAAAATACTTGGCATT 59.578 45.455 0.00 0.00 0.00 3.56
342 370 3.623960 CCGTCCGAAAATACTTGGCATTA 59.376 43.478 0.00 0.00 0.00 1.90
343 371 4.095185 CCGTCCGAAAATACTTGGCATTAA 59.905 41.667 0.00 0.00 0.00 1.40
344 372 5.392165 CCGTCCGAAAATACTTGGCATTAAA 60.392 40.000 0.00 0.00 0.00 1.52
345 373 6.087522 CGTCCGAAAATACTTGGCATTAAAA 58.912 36.000 0.00 0.00 0.00 1.52
346 374 6.750039 CGTCCGAAAATACTTGGCATTAAAAT 59.250 34.615 0.00 0.00 0.00 1.82
347 375 7.253618 CGTCCGAAAATACTTGGCATTAAAATG 60.254 37.037 0.00 0.00 39.40 2.32
348 376 7.757624 GTCCGAAAATACTTGGCATTAAAATGA 59.242 33.333 6.87 0.00 38.70 2.57
349 377 8.307483 TCCGAAAATACTTGGCATTAAAATGAA 58.693 29.630 6.87 0.00 38.70 2.57
350 378 8.379902 CCGAAAATACTTGGCATTAAAATGAAC 58.620 33.333 6.87 0.00 38.70 3.18
351 379 8.920665 CGAAAATACTTGGCATTAAAATGAACA 58.079 29.630 6.87 2.27 38.70 3.18
357 385 7.929159 ACTTGGCATTAAAATGAACAAAAAGG 58.071 30.769 6.87 2.80 38.70 3.11
358 386 6.874288 TGGCATTAAAATGAACAAAAAGGG 57.126 33.333 6.87 0.00 38.70 3.95
359 387 6.595682 TGGCATTAAAATGAACAAAAAGGGA 58.404 32.000 6.87 0.00 38.70 4.20
360 388 7.230027 TGGCATTAAAATGAACAAAAAGGGAT 58.770 30.769 6.87 0.00 38.70 3.85
361 389 7.174599 TGGCATTAAAATGAACAAAAAGGGATG 59.825 33.333 6.87 0.00 38.70 3.51
362 390 7.174772 GGCATTAAAATGAACAAAAAGGGATGT 59.825 33.333 6.87 0.00 38.70 3.06
363 391 9.213799 GCATTAAAATGAACAAAAAGGGATGTA 57.786 29.630 6.87 0.00 38.70 2.29
369 397 9.753674 AAATGAACAAAAAGGGATGTATCTAGA 57.246 29.630 0.00 0.00 0.00 2.43
370 398 9.753674 AATGAACAAAAAGGGATGTATCTAGAA 57.246 29.630 0.00 0.00 0.00 2.10
371 399 8.561738 TGAACAAAAAGGGATGTATCTAGAAC 57.438 34.615 0.00 0.00 0.00 3.01
372 400 8.383175 TGAACAAAAAGGGATGTATCTAGAACT 58.617 33.333 0.00 0.00 0.00 3.01
373 401 9.886132 GAACAAAAAGGGATGTATCTAGAACTA 57.114 33.333 0.00 0.00 0.00 2.24
426 454 9.801873 ATTCATTTTGATTACAAGTATTTCCGG 57.198 29.630 0.00 0.00 37.32 5.14
427 455 8.568676 TCATTTTGATTACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 37.32 5.14
428 456 8.455682 TCATTTTGATTACAAGTATTTCCGGAC 58.544 33.333 1.83 0.00 37.32 4.79
429 457 6.411630 TTTGATTACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 37.32 4.79
430 458 4.435425 TGATTACAAGTATTTCCGGACGG 58.565 43.478 1.83 3.96 0.00 4.79
431 459 4.160065 TGATTACAAGTATTTCCGGACGGA 59.840 41.667 1.83 9.76 43.52 4.69
432 460 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
433 461 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
434 462 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
435 463 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
456 484 2.000447 GTACATGGAAACTCCTCGCAC 59.000 52.381 0.00 0.00 37.46 5.34
570 598 2.962786 GCGTGTACACACCGCACA 60.963 61.111 24.98 0.00 43.66 4.57
571 599 2.925352 CGTGTACACACCGCACAC 59.075 61.111 24.98 0.00 43.66 3.82
574 602 1.521906 TGTACACACCGCACACCAC 60.522 57.895 0.00 0.00 0.00 4.16
575 603 2.279584 TACACACCGCACACCACG 60.280 61.111 0.00 0.00 0.00 4.94
624 652 3.807538 GACCGTGCGACCTAGCGA 61.808 66.667 0.00 0.00 40.67 4.93
706 734 0.521735 GTCCCAGCTTTAAACGCCAG 59.478 55.000 6.16 1.48 0.00 4.85
739 769 1.002274 TCTGCTCCTCCTCCTTCCC 59.998 63.158 0.00 0.00 0.00 3.97
740 770 1.002792 CTGCTCCTCCTCCTTCCCT 59.997 63.158 0.00 0.00 0.00 4.20
741 771 1.002274 TGCTCCTCCTCCTTCCCTC 59.998 63.158 0.00 0.00 0.00 4.30
742 772 1.313129 GCTCCTCCTCCTTCCCTCT 59.687 63.158 0.00 0.00 0.00 3.69
743 773 0.759060 GCTCCTCCTCCTTCCCTCTC 60.759 65.000 0.00 0.00 0.00 3.20
790 821 1.520590 GTCCTACTCTACTCGTACGCG 59.479 57.143 11.24 3.53 39.92 6.01
793 824 0.460109 TACTCTACTCGTACGCGCCA 60.460 55.000 11.24 0.00 38.14 5.69
817 848 0.378257 GTGCAGCGAGAGAGAGAGAG 59.622 60.000 0.00 0.00 0.00 3.20
818 849 0.251634 TGCAGCGAGAGAGAGAGAGA 59.748 55.000 0.00 0.00 0.00 3.10
819 850 0.940126 GCAGCGAGAGAGAGAGAGAG 59.060 60.000 0.00 0.00 0.00 3.20
820 851 1.473257 GCAGCGAGAGAGAGAGAGAGA 60.473 57.143 0.00 0.00 0.00 3.10
821 852 2.477825 CAGCGAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
822 853 2.101415 CAGCGAGAGAGAGAGAGAGAGA 59.899 54.545 0.00 0.00 0.00 3.10
823 854 2.363680 AGCGAGAGAGAGAGAGAGAGAG 59.636 54.545 0.00 0.00 0.00 3.20
824 855 2.362397 GCGAGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
912 972 2.352915 CGCCATCTCTCTCGTCGC 60.353 66.667 0.00 0.00 0.00 5.19
918 978 3.878519 CTCTCTCGTCGCCCCGTC 61.879 72.222 0.00 0.00 0.00 4.79
1269 1338 0.812412 CGTCTCGTCTCCCTCCTCTC 60.812 65.000 0.00 0.00 0.00 3.20
1280 1349 1.706575 CTCCTCTCCTTCCTCCCCA 59.293 63.158 0.00 0.00 0.00 4.96
1304 1373 2.584970 CGGCGCGCCTTCAATCTA 60.585 61.111 43.60 0.00 0.00 1.98
1307 1376 1.638467 GCGCGCCTTCAATCTACTG 59.362 57.895 23.24 0.00 0.00 2.74
1309 1378 0.807667 CGCGCCTTCAATCTACTGCT 60.808 55.000 0.00 0.00 0.00 4.24
1338 1407 4.430137 GCTTGCTCAAGTGAATGAATGA 57.570 40.909 10.86 0.00 40.45 2.57
1339 1408 4.801891 GCTTGCTCAAGTGAATGAATGAA 58.198 39.130 10.86 0.00 40.45 2.57
1487 1557 1.129998 CTTCTTGCTCAAGTGCATCCG 59.870 52.381 9.20 0.00 42.96 4.18
1489 1559 0.445436 CTTGCTCAAGTGCATCCGTC 59.555 55.000 0.00 0.00 42.96 4.79
1494 1564 1.811266 CAAGTGCATCCGTCGAGGG 60.811 63.158 18.14 18.14 41.52 4.30
1507 1577 1.956477 GTCGAGGGCCATGCATTTAAT 59.044 47.619 6.18 0.00 0.00 1.40
1508 1578 2.030805 GTCGAGGGCCATGCATTTAATC 60.031 50.000 6.18 0.00 0.00 1.75
1509 1579 2.158623 TCGAGGGCCATGCATTTAATCT 60.159 45.455 6.18 0.00 0.00 2.40
1510 1580 2.227388 CGAGGGCCATGCATTTAATCTC 59.773 50.000 6.18 0.24 0.00 2.75
1511 1581 3.494332 GAGGGCCATGCATTTAATCTCT 58.506 45.455 6.18 0.00 0.00 3.10
1512 1582 3.494332 AGGGCCATGCATTTAATCTCTC 58.506 45.455 6.18 0.00 0.00 3.20
1513 1583 3.139770 AGGGCCATGCATTTAATCTCTCT 59.860 43.478 6.18 0.00 0.00 3.10
1514 1584 3.505293 GGGCCATGCATTTAATCTCTCTC 59.495 47.826 4.39 0.00 0.00 3.20
1575 1662 0.609131 CCCGTGCTTCTTGGGTTCAT 60.609 55.000 0.00 0.00 38.18 2.57
1630 1717 2.737252 CGCTCGCTTTCCTTTCTTTAGT 59.263 45.455 0.00 0.00 0.00 2.24
1638 1725 5.998363 GCTTTCCTTTCTTTAGTGGAGAGAA 59.002 40.000 0.00 0.00 34.05 2.87
1639 1726 6.072948 GCTTTCCTTTCTTTAGTGGAGAGAAC 60.073 42.308 0.00 0.00 34.05 3.01
1640 1727 6.749036 TTCCTTTCTTTAGTGGAGAGAACT 57.251 37.500 0.00 0.00 0.00 3.01
1641 1728 6.749036 TCCTTTCTTTAGTGGAGAGAACTT 57.251 37.500 0.00 0.00 0.00 2.66
1642 1729 6.525629 TCCTTTCTTTAGTGGAGAGAACTTG 58.474 40.000 0.00 0.00 0.00 3.16
1665 1752 0.523519 GCAGCAGTCACTTTTAGGCC 59.476 55.000 0.00 0.00 0.00 5.19
1674 1761 6.555315 CAGTCACTTTTAGGCCAAATCATAC 58.445 40.000 5.01 0.00 0.00 2.39
1676 1763 7.552687 CAGTCACTTTTAGGCCAAATCATACTA 59.447 37.037 5.01 0.00 0.00 1.82
1677 1764 7.770897 AGTCACTTTTAGGCCAAATCATACTAG 59.229 37.037 5.01 0.00 0.00 2.57
1678 1765 6.542370 TCACTTTTAGGCCAAATCATACTAGC 59.458 38.462 5.01 0.00 0.00 3.42
1679 1766 6.318648 CACTTTTAGGCCAAATCATACTAGCA 59.681 38.462 5.01 0.00 0.00 3.49
1681 1768 7.561356 ACTTTTAGGCCAAATCATACTAGCATT 59.439 33.333 5.01 0.00 0.00 3.56
1682 1769 7.896383 TTTAGGCCAAATCATACTAGCATTT 57.104 32.000 5.01 0.00 0.00 2.32
1684 1771 6.396829 AGGCCAAATCATACTAGCATTTTC 57.603 37.500 5.01 0.00 0.00 2.29
1686 1773 5.509670 GGCCAAATCATACTAGCATTTTCCC 60.510 44.000 0.00 0.00 0.00 3.97
1687 1774 5.068987 GCCAAATCATACTAGCATTTTCCCA 59.931 40.000 0.00 0.00 0.00 4.37
1688 1775 6.507023 CCAAATCATACTAGCATTTTCCCAC 58.493 40.000 0.00 0.00 0.00 4.61
1689 1776 6.322201 CCAAATCATACTAGCATTTTCCCACT 59.678 38.462 0.00 0.00 0.00 4.00
1690 1777 7.502226 CCAAATCATACTAGCATTTTCCCACTA 59.498 37.037 0.00 0.00 0.00 2.74
1691 1778 8.345565 CAAATCATACTAGCATTTTCCCACTAC 58.654 37.037 0.00 0.00 0.00 2.73
1692 1779 6.808321 TCATACTAGCATTTTCCCACTACT 57.192 37.500 0.00 0.00 0.00 2.57
1693 1780 7.907841 TCATACTAGCATTTTCCCACTACTA 57.092 36.000 0.00 0.00 0.00 1.82
1694 1781 7.952671 TCATACTAGCATTTTCCCACTACTAG 58.047 38.462 0.00 0.00 33.50 2.57
1740 1865 0.769873 AATGCACAATTTTGGGGGCA 59.230 45.000 0.00 8.34 37.90 5.36
1754 1879 1.341383 GGGGGCAGTTGTCTGATTGAT 60.341 52.381 0.00 0.00 43.76 2.57
1755 1880 1.747355 GGGGCAGTTGTCTGATTGATG 59.253 52.381 0.00 0.00 43.76 3.07
1756 1881 1.747355 GGGCAGTTGTCTGATTGATGG 59.253 52.381 0.00 0.00 43.76 3.51
1808 1949 3.444742 TCTGAATTTAGCACCATGCCTTG 59.555 43.478 0.00 0.00 46.52 3.61
1818 1959 6.107901 AGCACCATGCCTTGTTTTTAATTA 57.892 33.333 0.00 0.00 46.52 1.40
1869 2010 1.087501 GAAATGAACAGAGCCCGGAC 58.912 55.000 0.73 0.00 0.00 4.79
1908 2049 4.201122 CCCATCTCCAGCCAGCCC 62.201 72.222 0.00 0.00 0.00 5.19
1950 2091 5.304614 GCTCAAGAACCATACTATCCAGGTA 59.695 44.000 0.00 0.00 33.15 3.08
2001 2165 2.121963 ACAGCCTCTCCCCCACAA 60.122 61.111 0.00 0.00 0.00 3.33
2034 2198 2.765250 CTAACACTCAGTGGCGCCGT 62.765 60.000 23.90 10.40 37.94 5.68
2055 2219 0.603707 CTTTTCAGACGAGGCCTGCA 60.604 55.000 12.00 0.00 0.00 4.41
2060 2224 2.279517 GACGAGGCCTGCATACCG 60.280 66.667 12.00 9.27 0.00 4.02
2173 2337 0.842635 AGAGAGCACCATCCCAATCC 59.157 55.000 0.00 0.00 0.00 3.01
2216 2380 1.499913 TTCAGGGCCAGCTCCATCAA 61.500 55.000 6.18 0.00 0.00 2.57
2311 2475 1.750399 CACCAGGTACAGCCATGCC 60.750 63.158 0.00 0.00 40.61 4.40
2319 2483 0.106569 TACAGCCATGCCCCATTCAG 60.107 55.000 0.00 0.00 0.00 3.02
2337 2501 6.037610 CCATTCAGGATTCAGCAAGTAACTAC 59.962 42.308 0.00 0.00 41.22 2.73
2338 2502 4.744570 TCAGGATTCAGCAAGTAACTACG 58.255 43.478 0.00 0.00 0.00 3.51
2339 2503 4.219944 TCAGGATTCAGCAAGTAACTACGT 59.780 41.667 0.00 0.00 0.00 3.57
2340 2504 5.416639 TCAGGATTCAGCAAGTAACTACGTA 59.583 40.000 0.00 0.00 0.00 3.57
2358 2522 3.067106 CGTAGCTTGTTCAAGTGGTCAT 58.933 45.455 13.04 0.00 0.00 3.06
2361 2525 2.624838 AGCTTGTTCAAGTGGTCATTGG 59.375 45.455 13.04 0.00 0.00 3.16
2362 2526 2.863704 GCTTGTTCAAGTGGTCATTGGC 60.864 50.000 13.04 0.00 0.00 4.52
2365 2529 2.229792 GTTCAAGTGGTCATTGGCTCA 58.770 47.619 0.00 0.00 0.00 4.26
2401 2566 0.928922 GACTCTGTCATCAGCATGCG 59.071 55.000 13.01 7.64 41.10 4.73
2566 2731 3.958860 GCAGGGTGGCAGGTGAGT 61.959 66.667 0.00 0.00 0.00 3.41
2568 2733 2.122413 AGGGTGGCAGGTGAGTGA 60.122 61.111 0.00 0.00 0.00 3.41
2569 2734 2.219875 AGGGTGGCAGGTGAGTGAG 61.220 63.158 0.00 0.00 0.00 3.51
2571 2736 2.348998 GTGGCAGGTGAGTGAGGG 59.651 66.667 0.00 0.00 0.00 4.30
2572 2737 3.640407 TGGCAGGTGAGTGAGGGC 61.640 66.667 0.00 0.00 0.00 5.19
2573 2738 3.325753 GGCAGGTGAGTGAGGGCT 61.326 66.667 0.00 0.00 0.00 5.19
2574 2739 2.046507 GCAGGTGAGTGAGGGCTG 60.047 66.667 0.00 0.00 0.00 4.85
2576 2741 1.595882 CAGGTGAGTGAGGGCTGAG 59.404 63.158 0.00 0.00 0.00 3.35
2577 2742 1.611851 AGGTGAGTGAGGGCTGAGG 60.612 63.158 0.00 0.00 0.00 3.86
2578 2743 2.267324 GTGAGTGAGGGCTGAGGC 59.733 66.667 0.00 0.00 37.82 4.70
2579 2744 2.203832 TGAGTGAGGGCTGAGGCA 60.204 61.111 8.68 0.00 40.87 4.75
2580 2745 1.614525 TGAGTGAGGGCTGAGGCAT 60.615 57.895 8.68 0.00 40.87 4.40
2581 2746 0.325577 TGAGTGAGGGCTGAGGCATA 60.326 55.000 8.68 0.00 40.87 3.14
2582 2747 0.105778 GAGTGAGGGCTGAGGCATAC 59.894 60.000 8.68 3.42 40.87 2.39
2594 2759 3.299503 TGAGGCATACTGCTACATGAGA 58.700 45.455 0.00 0.00 44.28 3.27
2595 2760 3.899980 TGAGGCATACTGCTACATGAGAT 59.100 43.478 0.00 0.00 44.28 2.75
2614 2779 5.163237 TGAGATATAGGGGGAAAGAAAACCG 60.163 44.000 0.00 0.00 0.00 4.44
2636 2801 4.927425 CGCCTAGCAGTAGTCAAAAAGTTA 59.073 41.667 0.00 0.00 0.00 2.24
2689 2854 4.708177 TGTTCTTGTTCTTCTCCTCCTTG 58.292 43.478 0.00 0.00 0.00 3.61
2797 2962 1.341209 GAAAGGACCCTTGCACTTTGG 59.659 52.381 1.50 0.00 36.26 3.28
2798 2963 0.261696 AAGGACCCTTGCACTTTGGT 59.738 50.000 0.00 0.00 34.60 3.67
2799 2964 1.145571 AGGACCCTTGCACTTTGGTA 58.854 50.000 0.00 0.00 0.00 3.25
2841 3014 7.986320 AGACTACATTCTCCATTTTCTCTGATG 59.014 37.037 0.00 0.00 0.00 3.07
2857 3030 3.446873 TCTGATGTTTCTCTCTCTGAGCC 59.553 47.826 0.00 0.00 42.38 4.70
2865 3038 3.734463 TCTCTCTCTGAGCCGTATACAG 58.266 50.000 3.32 0.00 42.38 2.74
2892 3068 4.160736 GCACTTGCTACTGTTTTTAGGG 57.839 45.455 0.00 0.00 38.21 3.53
2900 3079 5.248934 TGCTACTGTTTTTAGGGGCTAAGTA 59.751 40.000 0.00 0.00 0.00 2.24
2928 3107 7.450124 AGATTGCTTATGATGCTGGATTAAG 57.550 36.000 0.00 0.00 0.00 1.85
2929 3108 5.443185 TTGCTTATGATGCTGGATTAAGC 57.557 39.130 14.84 14.84 43.09 3.09
2934 3144 3.632643 TGATGCTGGATTAAGCTGTGA 57.367 42.857 0.00 0.00 43.90 3.58
2935 3145 4.160642 TGATGCTGGATTAAGCTGTGAT 57.839 40.909 0.00 0.00 43.90 3.06
2951 3161 2.815503 TGTGATTCATTCCTGTGCTGTG 59.184 45.455 0.00 0.00 0.00 3.66
3001 3211 3.035363 TGGAGACAACAACACCAGACTA 58.965 45.455 0.00 0.00 37.44 2.59
3059 3269 1.368203 TCCAATCCCCCTCTTGTCCTA 59.632 52.381 0.00 0.00 0.00 2.94
3080 3290 9.579768 GTCCTATTGCTTAGATCTACATACATG 57.420 37.037 0.67 0.00 0.00 3.21
3083 3293 6.425210 TTGCTTAGATCTACATACATGCCT 57.575 37.500 0.67 0.00 0.00 4.75
3120 3330 5.593909 CACATACCTATCTTTTGGAATGGCA 59.406 40.000 0.00 0.00 0.00 4.92
3128 3338 4.016444 TCTTTTGGAATGGCATGAGTACC 58.984 43.478 0.00 1.03 0.00 3.34
3135 3345 4.141711 GGAATGGCATGAGTACCTGACTTA 60.142 45.833 0.00 0.00 39.06 2.24
3169 3379 1.000607 TGAATACCGTAGAGCGATGCC 60.001 52.381 0.00 0.00 44.77 4.40
3268 3478 4.591072 AGCATCTTCCCTATCTCCAACTAC 59.409 45.833 0.00 0.00 0.00 2.73
3348 3558 0.863799 CATGCCGATCAGATTCGTGG 59.136 55.000 0.00 0.00 37.42 4.94
3357 3567 2.591715 GATTCGTGGATGGGGCCG 60.592 66.667 0.00 0.00 0.00 6.13
3382 3592 6.259608 GGAGGAATCTATACATACATGCATGC 59.740 42.308 26.53 11.82 0.00 4.06
3383 3593 6.714278 AGGAATCTATACATACATGCATGCA 58.286 36.000 26.53 25.04 0.00 3.96
3384 3594 7.344134 AGGAATCTATACATACATGCATGCAT 58.656 34.615 27.46 27.46 37.08 3.96
3440 3650 1.202348 GCTTATGTCAAGGCCACAACC 59.798 52.381 5.01 0.00 0.00 3.77
3492 3702 0.730834 CGCTCTCACAGTTGTCCTCG 60.731 60.000 0.00 0.00 0.00 4.63
3501 3711 2.061773 CAGTTGTCCTCGCACAAGTAG 58.938 52.381 2.82 0.00 37.76 2.57
3502 3712 1.687123 AGTTGTCCTCGCACAAGTAGT 59.313 47.619 1.51 0.00 38.02 2.73
3539 3749 0.179006 TATGCCTGCCAACACACACA 60.179 50.000 0.00 0.00 0.00 3.72
3540 3750 1.737355 ATGCCTGCCAACACACACAC 61.737 55.000 0.00 0.00 0.00 3.82
3541 3751 2.413963 GCCTGCCAACACACACACA 61.414 57.895 0.00 0.00 0.00 3.72
3542 3752 1.433064 CCTGCCAACACACACACAC 59.567 57.895 0.00 0.00 0.00 3.82
3605 3815 2.497138 CACCTGTGTTCATGCTTCTCA 58.503 47.619 0.00 0.00 0.00 3.27
3647 3860 4.091800 CCTTGCGCATCGAAATTTTGAAAT 59.908 37.500 12.75 0.00 0.00 2.17
3648 3861 5.288232 CCTTGCGCATCGAAATTTTGAAATA 59.712 36.000 12.75 0.00 0.00 1.40
3649 3862 6.183360 CCTTGCGCATCGAAATTTTGAAATAA 60.183 34.615 12.75 3.79 0.00 1.40
3743 3957 0.033642 TTGCCATGTGCCATTGTGTG 59.966 50.000 4.07 0.00 40.16 3.82
3749 3963 3.490249 CCATGTGCCATTGTGTGATCATC 60.490 47.826 0.00 0.00 0.00 2.92
3850 4064 5.658190 AGCCACCTTTTTCATAGTGCATTAT 59.342 36.000 0.00 0.00 0.00 1.28
3864 4078 3.809832 GTGCATTATAATGGACGAGCACT 59.190 43.478 27.51 0.00 45.46 4.40
3865 4079 4.273480 GTGCATTATAATGGACGAGCACTT 59.727 41.667 27.51 0.00 45.46 3.16
3866 4080 5.465390 GTGCATTATAATGGACGAGCACTTA 59.535 40.000 27.51 0.00 45.46 2.24
3867 4081 6.147821 GTGCATTATAATGGACGAGCACTTAT 59.852 38.462 27.51 0.00 45.46 1.73
3868 4082 6.710295 TGCATTATAATGGACGAGCACTTATT 59.290 34.615 23.57 0.00 36.90 1.40
3869 4083 7.875554 TGCATTATAATGGACGAGCACTTATTA 59.124 33.333 23.57 0.00 36.90 0.98
3870 4084 8.383619 GCATTATAATGGACGAGCACTTATTAG 58.616 37.037 23.57 0.00 36.90 1.73
3871 4085 7.884816 TTATAATGGACGAGCACTTATTAGC 57.115 36.000 0.00 0.00 0.00 3.09
3872 4086 4.408182 AATGGACGAGCACTTATTAGCT 57.592 40.909 0.00 0.00 45.25 3.32
3906 4131 6.922407 GCTCGTGCATGATACTATGATGATAT 59.078 38.462 9.53 0.00 39.41 1.63
3907 4132 8.078596 GCTCGTGCATGATACTATGATGATATA 58.921 37.037 9.53 0.00 39.41 0.86
3922 4147 5.528690 TGATGATATAGCACAGAAAAGGCAC 59.471 40.000 0.00 0.00 0.00 5.01
3927 4152 3.160679 AGCACAGAAAAGGCACCTAAT 57.839 42.857 0.00 0.00 0.00 1.73
3930 4155 3.127721 GCACAGAAAAGGCACCTAATCTC 59.872 47.826 0.00 0.00 0.00 2.75
3931 4156 4.583871 CACAGAAAAGGCACCTAATCTCT 58.416 43.478 0.00 0.00 0.00 3.10
3935 4160 6.156949 ACAGAAAAGGCACCTAATCTCTATCA 59.843 38.462 0.00 0.00 0.00 2.15
3936 4161 6.705381 CAGAAAAGGCACCTAATCTCTATCAG 59.295 42.308 0.00 0.00 0.00 2.90
3943 4168 5.183140 GCACCTAATCTCTATCAGTCTCCTC 59.817 48.000 0.00 0.00 0.00 3.71
3959 4184 5.022122 GTCTCCTCATCATGATCCTATCCA 58.978 45.833 4.86 0.00 0.00 3.41
4350 4586 0.317687 GCGCCTACTTCTACTACGGC 60.318 60.000 0.00 0.00 0.00 5.68
4383 4619 1.227383 CCCCAACTGTCCATAGCCC 59.773 63.158 0.00 0.00 0.00 5.19
4393 4629 2.647299 TGTCCATAGCCCTCCAAGAAAA 59.353 45.455 0.00 0.00 0.00 2.29
4433 4672 0.317160 GCCCAAGCCCTAACAACAAC 59.683 55.000 0.00 0.00 0.00 3.32
4436 4696 1.339929 CCAAGCCCTAACAACAACACC 59.660 52.381 0.00 0.00 0.00 4.16
4439 4699 1.183030 GCCCTAACAACAACACCCCC 61.183 60.000 0.00 0.00 0.00 5.40
4481 4747 0.482446 TGATTCACACCCCAAGCCTT 59.518 50.000 0.00 0.00 0.00 4.35
4494 4760 3.243873 CCCAAGCCTTCTTCTTTTTCCAC 60.244 47.826 0.00 0.00 0.00 4.02
4576 4842 7.849160 GGAGTTGATTAACTTCTAGGTAAGGT 58.151 38.462 4.16 0.00 46.79 3.50
4577 4843 7.764901 GGAGTTGATTAACTTCTAGGTAAGGTG 59.235 40.741 4.16 0.00 46.79 4.00
4581 4847 5.672421 TTAACTTCTAGGTAAGGTGAGGC 57.328 43.478 0.00 0.00 0.00 4.70
4644 4910 1.470632 CGGAGAGATGTTGGTCTGAGC 60.471 57.143 0.00 0.00 0.00 4.26
4645 4911 1.830477 GGAGAGATGTTGGTCTGAGCT 59.170 52.381 8.47 0.00 0.00 4.09
4659 4925 0.473694 TGAGCTTGTTCTGGGGAGGA 60.474 55.000 0.00 0.00 0.00 3.71
4691 4957 2.169832 TTCTGAAGAGAAACAGGCCG 57.830 50.000 0.00 0.00 35.14 6.13
4709 4975 1.826709 GGTTTGGTTGGGTTGGGTG 59.173 57.895 0.00 0.00 0.00 4.61
4710 4976 1.145156 GTTTGGTTGGGTTGGGTGC 59.855 57.895 0.00 0.00 0.00 5.01
4711 4977 1.002274 TTTGGTTGGGTTGGGTGCT 59.998 52.632 0.00 0.00 0.00 4.40
4712 4978 0.618968 TTTGGTTGGGTTGGGTGCTT 60.619 50.000 0.00 0.00 0.00 3.91
4713 4979 0.261991 TTGGTTGGGTTGGGTGCTTA 59.738 50.000 0.00 0.00 0.00 3.09
4714 4980 0.468400 TGGTTGGGTTGGGTGCTTAC 60.468 55.000 0.00 0.00 0.00 2.34
4715 4981 0.178973 GGTTGGGTTGGGTGCTTACT 60.179 55.000 0.00 0.00 0.00 2.24
4716 4982 1.699730 GTTGGGTTGGGTGCTTACTT 58.300 50.000 0.00 0.00 0.00 2.24
4717 4983 1.339929 GTTGGGTTGGGTGCTTACTTG 59.660 52.381 0.00 0.00 0.00 3.16
4718 4984 0.178975 TGGGTTGGGTGCTTACTTGG 60.179 55.000 0.00 0.00 0.00 3.61
4719 4985 0.898326 GGGTTGGGTGCTTACTTGGG 60.898 60.000 0.00 0.00 0.00 4.12
4725 4991 1.613520 GGGTGCTTACTTGGGTTCTCC 60.614 57.143 0.00 0.00 0.00 3.71
4730 4996 2.038557 GCTTACTTGGGTTCTCCTGTGA 59.961 50.000 0.00 0.00 36.20 3.58
4735 5001 1.342074 TGGGTTCTCCTGTGACTCAG 58.658 55.000 0.00 0.00 43.27 3.35
4745 5011 8.874816 GTTCTCCTGTGACTCAGATTATTTTAC 58.125 37.037 6.09 0.00 46.27 2.01
4761 5027 4.715534 TTTTACTTCTCCCATGTCACCA 57.284 40.909 0.00 0.00 0.00 4.17
4799 5106 3.792047 CGCATGTGTGAGCACCCG 61.792 66.667 0.00 0.00 44.65 5.28
4830 5137 6.833416 TGTTATTGTATTCTGATTTCTGGGGG 59.167 38.462 0.00 0.00 0.00 5.40
4924 5234 2.366590 CACACTAGCTAGCCATCCATCA 59.633 50.000 20.91 0.00 0.00 3.07
4925 5235 2.632028 ACACTAGCTAGCCATCCATCAG 59.368 50.000 20.91 0.00 0.00 2.90
4926 5236 2.896044 CACTAGCTAGCCATCCATCAGA 59.104 50.000 20.91 0.00 0.00 3.27
4938 5532 1.556451 TCCATCAGACCATCACCTGTG 59.444 52.381 0.00 0.00 0.00 3.66
4980 5574 5.829924 AGGATGGCTACAATGAATAAGGTTG 59.170 40.000 0.00 0.00 0.00 3.77
4982 5576 5.186256 TGGCTACAATGAATAAGGTTGGA 57.814 39.130 0.00 0.00 0.00 3.53
4983 5577 4.947388 TGGCTACAATGAATAAGGTTGGAC 59.053 41.667 0.00 0.00 0.00 4.02
5161 5763 1.545651 GGGTTGGGTTGGACTCTGAAG 60.546 57.143 0.00 0.00 0.00 3.02
5204 5808 5.825151 GGATGGGGTTTTCTTATCTTGAGAG 59.175 44.000 0.00 0.00 0.00 3.20
5210 5814 7.334671 GGGGTTTTCTTATCTTGAGAGTTACTG 59.665 40.741 0.00 0.00 0.00 2.74
5215 5819 5.717178 TCTTATCTTGAGAGTTACTGGTGCT 59.283 40.000 0.00 0.00 0.00 4.40
5216 5820 6.890268 TCTTATCTTGAGAGTTACTGGTGCTA 59.110 38.462 0.00 0.00 0.00 3.49
5219 5823 5.724328 TCTTGAGAGTTACTGGTGCTATTG 58.276 41.667 0.00 0.00 0.00 1.90
5240 6031 1.200948 GTTGTGGCTTCCAGCTCAATC 59.799 52.381 8.99 2.95 41.99 2.67
5265 6056 0.303493 CAACCAAGTCAACACGTCCG 59.697 55.000 0.00 0.00 0.00 4.79
5284 6075 4.509600 GTCCGATTCTTCTCCATCAACATC 59.490 45.833 0.00 0.00 0.00 3.06
5293 6084 2.093890 TCCATCAACATCCATGCACAC 58.906 47.619 0.00 0.00 0.00 3.82
5304 6095 5.356190 ACATCCATGCACACATTCTTCTAAG 59.644 40.000 0.00 0.00 32.87 2.18
5328 6120 6.721208 AGAAATTGAAGTGCTGGAATAGGAAA 59.279 34.615 0.00 0.00 0.00 3.13
5329 6121 6.916360 AATTGAAGTGCTGGAATAGGAAAA 57.084 33.333 0.00 0.00 0.00 2.29
5335 6127 1.338020 GCTGGAATAGGAAAATGGGCG 59.662 52.381 0.00 0.00 0.00 6.13
5337 6129 2.618709 CTGGAATAGGAAAATGGGCGAC 59.381 50.000 0.00 0.00 0.00 5.19
5345 6137 0.591170 AAAATGGGCGACGAACTGTG 59.409 50.000 0.00 0.00 0.00 3.66
5347 6139 3.529341 ATGGGCGACGAACTGTGCA 62.529 57.895 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 9.725019 GGATGATATGGTCTTTGTATCAATGTA 57.275 33.333 0.00 0.00 38.08 2.29
67 70 8.443176 AGGATGATATGGTCTTTGTATCAATGT 58.557 33.333 0.00 0.00 38.08 2.71
68 71 8.859236 AGGATGATATGGTCTTTGTATCAATG 57.141 34.615 0.00 0.00 38.08 2.82
69 72 9.872684 AAAGGATGATATGGTCTTTGTATCAAT 57.127 29.630 0.00 0.00 38.08 2.57
145 148 6.314648 CACCCCTTAGAATAGTTTACGGTTTC 59.685 42.308 0.00 0.00 0.00 2.78
148 151 4.779489 ACACCCCTTAGAATAGTTTACGGT 59.221 41.667 0.00 0.00 0.00 4.83
150 153 7.719483 TGATACACCCCTTAGAATAGTTTACG 58.281 38.462 0.00 0.00 0.00 3.18
155 158 7.924541 TGTTTTGATACACCCCTTAGAATAGT 58.075 34.615 0.00 0.00 0.00 2.12
158 161 8.485578 TTTTGTTTTGATACACCCCTTAGAAT 57.514 30.769 0.00 0.00 0.00 2.40
217 221 8.844244 GCACAAATTGGATATGTAAATCTCTCT 58.156 33.333 0.00 0.00 0.00 3.10
218 222 8.078596 GGCACAAATTGGATATGTAAATCTCTC 58.921 37.037 0.00 0.00 0.00 3.20
219 223 7.014615 GGGCACAAATTGGATATGTAAATCTCT 59.985 37.037 0.00 0.00 0.00 3.10
220 224 7.014615 AGGGCACAAATTGGATATGTAAATCTC 59.985 37.037 0.00 0.00 0.00 2.75
221 225 6.840705 AGGGCACAAATTGGATATGTAAATCT 59.159 34.615 0.00 0.00 0.00 2.40
222 226 7.054491 AGGGCACAAATTGGATATGTAAATC 57.946 36.000 0.00 0.00 0.00 2.17
241 245 4.927267 TTTTCCTGAGAAGATTAGGGCA 57.073 40.909 0.00 0.00 32.35 5.36
265 270 1.073284 TGTTTCTCCTAGGGCACAACC 59.927 52.381 9.46 0.00 37.93 3.77
274 279 0.532573 TCGCCTGCTGTTTCTCCTAG 59.467 55.000 0.00 0.00 0.00 3.02
292 320 4.803426 CACTCTGCGCCCGTCCTC 62.803 72.222 4.18 0.00 0.00 3.71
306 334 2.035312 ACGGAGGGAGTACGCACT 59.965 61.111 0.00 0.00 37.87 4.40
307 335 2.488820 GACGGAGGGAGTACGCAC 59.511 66.667 0.00 0.00 0.00 5.34
308 336 2.753043 GGACGGAGGGAGTACGCA 60.753 66.667 0.00 0.00 0.00 5.24
309 337 3.885521 CGGACGGAGGGAGTACGC 61.886 72.222 0.00 0.00 39.20 4.42
310 338 1.308069 TTTCGGACGGAGGGAGTACG 61.308 60.000 0.00 0.00 46.50 3.67
311 339 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
312 340 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
313 341 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
314 342 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
315 343 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
316 344 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
317 345 2.277084 CCAAGTATTTTCGGACGGAGG 58.723 52.381 0.00 0.00 0.00 4.30
318 346 1.664151 GCCAAGTATTTTCGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
319 347 1.002201 TGCCAAGTATTTTCGGACGGA 59.998 47.619 0.00 0.00 0.00 4.69
320 348 1.444836 TGCCAAGTATTTTCGGACGG 58.555 50.000 0.00 0.00 0.00 4.79
321 349 3.757745 AATGCCAAGTATTTTCGGACG 57.242 42.857 0.00 0.00 0.00 4.79
322 350 7.757624 TCATTTTAATGCCAAGTATTTTCGGAC 59.242 33.333 0.00 0.00 36.36 4.79
323 351 7.831753 TCATTTTAATGCCAAGTATTTTCGGA 58.168 30.769 0.00 0.00 36.36 4.55
324 352 8.379902 GTTCATTTTAATGCCAAGTATTTTCGG 58.620 33.333 0.00 0.00 36.36 4.30
325 353 8.920665 TGTTCATTTTAATGCCAAGTATTTTCG 58.079 29.630 0.00 0.00 36.36 3.46
331 359 9.050601 CCTTTTTGTTCATTTTAATGCCAAGTA 57.949 29.630 0.00 0.00 36.36 2.24
332 360 7.013178 CCCTTTTTGTTCATTTTAATGCCAAGT 59.987 33.333 0.00 0.00 36.36 3.16
333 361 7.228308 TCCCTTTTTGTTCATTTTAATGCCAAG 59.772 33.333 0.00 0.00 36.36 3.61
334 362 7.056635 TCCCTTTTTGTTCATTTTAATGCCAA 58.943 30.769 0.00 1.63 36.36 4.52
335 363 6.595682 TCCCTTTTTGTTCATTTTAATGCCA 58.404 32.000 0.00 0.00 36.36 4.92
336 364 7.174772 ACATCCCTTTTTGTTCATTTTAATGCC 59.825 33.333 0.00 0.00 36.36 4.40
337 365 8.098220 ACATCCCTTTTTGTTCATTTTAATGC 57.902 30.769 0.00 0.00 36.36 3.56
343 371 9.753674 TCTAGATACATCCCTTTTTGTTCATTT 57.246 29.630 0.00 0.00 0.00 2.32
344 372 9.753674 TTCTAGATACATCCCTTTTTGTTCATT 57.246 29.630 0.00 0.00 0.00 2.57
345 373 9.178758 GTTCTAGATACATCCCTTTTTGTTCAT 57.821 33.333 0.00 0.00 0.00 2.57
346 374 8.383175 AGTTCTAGATACATCCCTTTTTGTTCA 58.617 33.333 0.00 0.00 0.00 3.18
347 375 8.794335 AGTTCTAGATACATCCCTTTTTGTTC 57.206 34.615 0.00 0.00 0.00 3.18
400 428 9.801873 CCGGAAATACTTGTAATCAAAATGAAT 57.198 29.630 0.00 0.00 32.87 2.57
401 429 9.015367 TCCGGAAATACTTGTAATCAAAATGAA 57.985 29.630 0.00 0.00 32.87 2.57
402 430 8.455682 GTCCGGAAATACTTGTAATCAAAATGA 58.544 33.333 5.23 0.00 32.87 2.57
403 431 7.428183 CGTCCGGAAATACTTGTAATCAAAATG 59.572 37.037 5.23 0.00 32.87 2.32
404 432 7.414762 CCGTCCGGAAATACTTGTAATCAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
405 433 6.128227 CCGTCCGGAAATACTTGTAATCAAAA 60.128 38.462 5.23 0.00 37.50 2.44
406 434 5.352016 CCGTCCGGAAATACTTGTAATCAAA 59.648 40.000 5.23 0.00 37.50 2.69
407 435 4.871557 CCGTCCGGAAATACTTGTAATCAA 59.128 41.667 5.23 0.00 37.50 2.57
408 436 4.160065 TCCGTCCGGAAATACTTGTAATCA 59.840 41.667 5.23 0.00 42.05 2.57
409 437 4.685924 TCCGTCCGGAAATACTTGTAATC 58.314 43.478 5.23 0.00 42.05 1.75
410 438 4.442472 CCTCCGTCCGGAAATACTTGTAAT 60.442 45.833 5.23 0.00 44.66 1.89
411 439 3.119029 CCTCCGTCCGGAAATACTTGTAA 60.119 47.826 5.23 0.00 44.66 2.41
412 440 2.428171 CCTCCGTCCGGAAATACTTGTA 59.572 50.000 5.23 0.00 44.66 2.41
413 441 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
414 442 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
415 443 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
416 444 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
417 445 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
418 446 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
419 447 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
420 448 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
421 449 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
422 450 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
423 451 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
424 452 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
425 453 0.396695 TCCATGTACTCCCTCCGTCC 60.397 60.000 0.00 0.00 0.00 4.79
426 454 1.481871 TTCCATGTACTCCCTCCGTC 58.518 55.000 0.00 0.00 0.00 4.79
427 455 1.553704 GTTTCCATGTACTCCCTCCGT 59.446 52.381 0.00 0.00 0.00 4.69
428 456 1.831736 AGTTTCCATGTACTCCCTCCG 59.168 52.381 0.00 0.00 0.00 4.63
429 457 3.545366 GAGTTTCCATGTACTCCCTCC 57.455 52.381 8.07 0.00 35.78 4.30
434 462 2.094182 TGCGAGGAGTTTCCATGTACTC 60.094 50.000 10.00 10.00 39.61 2.59
435 463 1.899814 TGCGAGGAGTTTCCATGTACT 59.100 47.619 0.00 0.00 39.61 2.73
450 478 1.635663 GGTTGATTGACGGGTGCGAG 61.636 60.000 0.00 0.00 0.00 5.03
456 484 2.073816 GTACAGTGGTTGATTGACGGG 58.926 52.381 0.00 0.00 0.00 5.28
533 561 2.398554 CGGGTTCGGTTGCAGGATG 61.399 63.158 0.00 0.00 40.87 3.51
604 632 4.849329 CTAGGTCGCACGGTCGCC 62.849 72.222 0.00 0.00 0.00 5.54
618 646 1.226435 GCGTCCAGTGTCTCGCTAG 60.226 63.158 13.71 0.00 44.28 3.42
619 647 2.697761 GGCGTCCAGTGTCTCGCTA 61.698 63.158 18.09 0.00 46.37 4.26
620 648 4.057428 GGCGTCCAGTGTCTCGCT 62.057 66.667 18.09 0.00 46.37 4.93
739 769 0.478507 GGGGAGAGAGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
740 770 0.996762 GGGGGAGAGAGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
741 771 1.541672 GGGGGAGAGAGAGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
742 772 2.387772 CGGGGGAGAGAGAGAGGGA 61.388 68.421 0.00 0.00 0.00 4.20
743 773 2.197324 CGGGGGAGAGAGAGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
790 821 3.720193 CTCGCTGCACAGTGTGGC 61.720 66.667 24.24 18.10 39.77 5.01
793 824 1.175347 TCTCTCTCGCTGCACAGTGT 61.175 55.000 10.75 0.00 39.77 3.55
817 848 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
818 849 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
819 850 3.726607 CTGCTCTCTCTCTCTCTCTCTC 58.273 54.545 0.00 0.00 0.00 3.20
820 851 2.158842 GCTGCTCTCTCTCTCTCTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
821 852 2.216898 GCTGCTCTCTCTCTCTCTCTC 58.783 57.143 0.00 0.00 0.00 3.20
822 853 1.473965 CGCTGCTCTCTCTCTCTCTCT 60.474 57.143 0.00 0.00 0.00 3.10
823 854 0.940126 CGCTGCTCTCTCTCTCTCTC 59.060 60.000 0.00 0.00 0.00 3.20
824 855 0.464373 CCGCTGCTCTCTCTCTCTCT 60.464 60.000 0.00 0.00 0.00 3.10
918 978 4.504916 CTCTGCTCTGGCCGACGG 62.505 72.222 10.29 10.29 37.74 4.79
1269 1338 2.990479 CCGTTCTGGGGAGGAAGG 59.010 66.667 0.00 0.00 0.00 3.46
1295 1364 5.136250 CGTAGCAAAGCAGTAGATTGAAG 57.864 43.478 0.00 0.00 0.00 3.02
1336 1405 9.081204 TCTCTTTTCTTTTCATGGATTCATTCA 57.919 29.630 0.00 0.00 0.00 2.57
1337 1406 9.570488 CTCTCTTTTCTTTTCATGGATTCATTC 57.430 33.333 0.00 0.00 0.00 2.67
1338 1407 9.305555 TCTCTCTTTTCTTTTCATGGATTCATT 57.694 29.630 0.00 0.00 0.00 2.57
1339 1408 8.738106 GTCTCTCTTTTCTTTTCATGGATTCAT 58.262 33.333 0.00 0.00 0.00 2.57
1380 1449 3.878778 CCTTTCTTCGACTTCCATCCAT 58.121 45.455 0.00 0.00 0.00 3.41
1381 1450 2.615493 GCCTTTCTTCGACTTCCATCCA 60.615 50.000 0.00 0.00 0.00 3.41
1382 1451 2.010497 GCCTTTCTTCGACTTCCATCC 58.990 52.381 0.00 0.00 0.00 3.51
1383 1452 1.661112 CGCCTTTCTTCGACTTCCATC 59.339 52.381 0.00 0.00 0.00 3.51
1413 1483 1.652329 GCGCGCATGAAGCACATAC 60.652 57.895 29.10 0.00 46.13 2.39
1487 1557 1.388547 TTAAATGCATGGCCCTCGAC 58.611 50.000 0.00 0.00 0.00 4.20
1489 1559 2.227388 GAGATTAAATGCATGGCCCTCG 59.773 50.000 0.00 0.00 0.00 4.63
1494 1564 5.307204 AGAGAGAGAGATTAAATGCATGGC 58.693 41.667 0.00 0.00 0.00 4.40
1507 1577 2.430694 CGGACAGAGAGAGAGAGAGAGA 59.569 54.545 0.00 0.00 0.00 3.10
1508 1578 2.168521 ACGGACAGAGAGAGAGAGAGAG 59.831 54.545 0.00 0.00 0.00 3.20
1509 1579 2.167693 GACGGACAGAGAGAGAGAGAGA 59.832 54.545 0.00 0.00 0.00 3.10
1510 1580 2.550978 GACGGACAGAGAGAGAGAGAG 58.449 57.143 0.00 0.00 0.00 3.20
1511 1581 1.134936 CGACGGACAGAGAGAGAGAGA 60.135 57.143 0.00 0.00 0.00 3.10
1512 1582 1.286501 CGACGGACAGAGAGAGAGAG 58.713 60.000 0.00 0.00 0.00 3.20
1513 1583 0.741574 GCGACGGACAGAGAGAGAGA 60.742 60.000 0.00 0.00 0.00 3.10
1514 1584 1.711060 GGCGACGGACAGAGAGAGAG 61.711 65.000 0.00 0.00 0.00 3.20
1575 1662 0.105224 TGGCTCCTTTCAACGTCGAA 59.895 50.000 0.00 0.00 0.00 3.71
1613 1700 4.315803 TCTCCACTAAAGAAAGGAAAGCG 58.684 43.478 0.00 0.00 0.00 4.68
1614 1701 5.552178 TCTCTCCACTAAAGAAAGGAAAGC 58.448 41.667 0.00 0.00 0.00 3.51
1615 1702 7.220740 AGTTCTCTCCACTAAAGAAAGGAAAG 58.779 38.462 0.00 0.00 31.26 2.62
1616 1703 7.138054 AGTTCTCTCCACTAAAGAAAGGAAA 57.862 36.000 0.00 0.00 31.26 3.13
1630 1717 1.270518 GCTGCAGTCAAGTTCTCTCCA 60.271 52.381 16.64 0.00 0.00 3.86
1665 1752 7.338800 AGTGGGAAAATGCTAGTATGATTTG 57.661 36.000 0.00 0.00 0.00 2.32
1674 1761 7.349412 ACTACTAGTAGTGGGAAAATGCTAG 57.651 40.000 30.33 5.76 44.11 3.42
1687 1774 8.694581 ACTGAAAGAAGAACACTACTAGTAGT 57.305 34.615 26.61 26.61 41.75 2.73
1688 1775 9.615295 GAACTGAAAGAAGAACACTACTAGTAG 57.385 37.037 25.30 25.30 37.43 2.57
1689 1776 8.574737 GGAACTGAAAGAAGAACACTACTAGTA 58.425 37.037 1.89 1.89 37.43 1.82
1690 1777 7.288158 AGGAACTGAAAGAAGAACACTACTAGT 59.712 37.037 0.00 0.00 37.18 2.57
1691 1778 7.662897 AGGAACTGAAAGAAGAACACTACTAG 58.337 38.462 0.00 0.00 37.18 2.57
1692 1779 7.598759 AGGAACTGAAAGAAGAACACTACTA 57.401 36.000 0.00 0.00 37.18 1.82
1693 1780 6.487299 AGGAACTGAAAGAAGAACACTACT 57.513 37.500 0.00 0.00 37.18 2.57
1694 1781 6.074249 CGAAGGAACTGAAAGAAGAACACTAC 60.074 42.308 0.00 0.00 40.86 2.73
1740 1865 5.481824 TCAGAGTACCATCAATCAGACAACT 59.518 40.000 0.00 0.00 0.00 3.16
1754 1879 2.113860 GCATTGGCTTCAGAGTACCA 57.886 50.000 0.00 0.00 36.96 3.25
1831 1972 8.915057 TCATTTCTCAGAATCAGTTCTTTCTT 57.085 30.769 0.00 0.00 41.92 2.52
1832 1973 8.782144 GTTCATTTCTCAGAATCAGTTCTTTCT 58.218 33.333 0.00 0.00 41.92 2.52
1833 1974 8.562892 TGTTCATTTCTCAGAATCAGTTCTTTC 58.437 33.333 0.00 0.00 41.92 2.62
1834 1975 8.455903 TGTTCATTTCTCAGAATCAGTTCTTT 57.544 30.769 0.00 0.00 41.92 2.52
1869 2010 0.319040 CGCAGTCTATGATGTCCCCG 60.319 60.000 0.00 0.00 0.00 5.73
1908 2049 2.032071 AAAGGGTGGTCGAAGGCG 59.968 61.111 0.00 0.00 39.35 5.52
1950 2091 0.902516 GTGGTGCTGGAGAGAGAGGT 60.903 60.000 0.00 0.00 0.00 3.85
1989 2153 3.434167 CCATCATAACTTGTGGGGGAGAG 60.434 52.174 0.00 0.00 0.00 3.20
2001 2165 6.126940 ACTGAGTGTTAGCATCCATCATAACT 60.127 38.462 0.00 0.00 0.00 2.24
2034 2198 0.603707 CAGGCCTCGTCTGAAAAGCA 60.604 55.000 0.00 0.00 37.47 3.91
2112 2276 2.353011 CCACATTTGGGTGATTGTCTGC 60.353 50.000 0.00 0.00 41.32 4.26
2159 2323 1.526917 CTCCGGATTGGGATGGTGC 60.527 63.158 3.57 0.00 38.76 5.01
2166 2330 1.224592 CTTGGTCCTCCGGATTGGG 59.775 63.158 3.57 2.46 38.76 4.12
2173 2337 0.614979 TCCTCCTTCTTGGTCCTCCG 60.615 60.000 0.00 0.00 37.07 4.63
2216 2380 1.134670 GCGTCTTCTTGCCATACCTCT 60.135 52.381 0.00 0.00 0.00 3.69
2311 2475 2.731572 ACTTGCTGAATCCTGAATGGG 58.268 47.619 0.00 0.00 36.20 4.00
2319 2483 4.503370 GCTACGTAGTTACTTGCTGAATCC 59.497 45.833 22.98 0.00 37.78 3.01
2337 2501 2.479837 TGACCACTTGAACAAGCTACG 58.520 47.619 13.50 2.84 41.99 3.51
2338 2502 4.320494 CCAATGACCACTTGAACAAGCTAC 60.320 45.833 13.50 5.07 41.99 3.58
2339 2503 3.820467 CCAATGACCACTTGAACAAGCTA 59.180 43.478 13.50 0.00 41.99 3.32
2340 2504 2.624838 CCAATGACCACTTGAACAAGCT 59.375 45.455 13.50 0.00 41.99 3.74
2358 2522 3.517296 TGACAGGGTTAAATGAGCCAA 57.483 42.857 0.00 0.00 39.66 4.52
2361 2525 5.402398 GTCAAATGACAGGGTTAAATGAGC 58.598 41.667 8.63 0.00 44.18 4.26
2401 2566 2.551270 TCCCCCTCCACATATGCTATC 58.449 52.381 1.58 0.00 0.00 2.08
2566 2731 2.215191 CAGTATGCCTCAGCCCTCA 58.785 57.895 0.00 0.00 38.69 3.86
2578 2743 6.041409 CCCCCTATATCTCATGTAGCAGTATG 59.959 46.154 0.00 0.00 40.87 2.39
2579 2744 6.068200 TCCCCCTATATCTCATGTAGCAGTAT 60.068 42.308 0.00 0.00 0.00 2.12
2580 2745 5.255443 TCCCCCTATATCTCATGTAGCAGTA 59.745 44.000 0.00 0.00 0.00 2.74
2581 2746 4.045974 TCCCCCTATATCTCATGTAGCAGT 59.954 45.833 0.00 0.00 0.00 4.40
2582 2747 4.614475 TCCCCCTATATCTCATGTAGCAG 58.386 47.826 0.00 0.00 0.00 4.24
2594 2759 3.436035 GGCGGTTTTCTTTCCCCCTATAT 60.436 47.826 0.00 0.00 0.00 0.86
2595 2760 2.092267 GGCGGTTTTCTTTCCCCCTATA 60.092 50.000 0.00 0.00 0.00 1.31
2614 2779 5.699458 TGTAACTTTTTGACTACTGCTAGGC 59.301 40.000 0.00 0.00 0.00 3.93
2636 2801 5.458041 AGCTGAAGCACAACATTTAATGT 57.542 34.783 4.56 4.56 44.62 2.71
2745 2910 6.974048 GCACATATCATTATTGCAACACAGAA 59.026 34.615 0.00 0.00 33.24 3.02
2797 2962 7.271511 TGTAGTCTAGCTTCTACTACCACTAC 58.728 42.308 21.01 8.74 43.14 2.73
2798 2963 7.429374 TGTAGTCTAGCTTCTACTACCACTA 57.571 40.000 21.01 7.86 43.14 2.74
2799 2964 6.310764 TGTAGTCTAGCTTCTACTACCACT 57.689 41.667 21.01 0.00 43.14 4.00
2878 3051 9.895138 TTATTACTTAGCCCCTAAAAACAGTAG 57.105 33.333 0.00 0.00 0.00 2.57
2900 3079 8.418597 AATCCAGCATCATAAGCAATCTTATT 57.581 30.769 0.00 0.00 42.10 1.40
2928 3107 2.089980 AGCACAGGAATGAATCACAGC 58.910 47.619 0.00 0.00 0.00 4.40
2929 3108 3.079578 ACAGCACAGGAATGAATCACAG 58.920 45.455 0.00 0.00 0.00 3.66
2934 3144 1.913778 TGCACAGCACAGGAATGAAT 58.086 45.000 0.00 0.00 31.71 2.57
2935 3145 1.689984 TTGCACAGCACAGGAATGAA 58.310 45.000 0.00 0.00 38.71 2.57
2951 3161 1.344114 TGGGCTGACCTGAAATTTTGC 59.656 47.619 0.00 0.00 41.11 3.68
3001 3211 7.973048 TTATCTTACAGTCCAGTAGGTGAAT 57.027 36.000 0.00 0.00 35.89 2.57
3059 3269 7.013823 AGGCATGTATGTAGATCTAAGCAAT 57.986 36.000 3.40 0.00 0.00 3.56
3080 3290 5.815222 AGGTATGTGTGTTTTTGAAAAAGGC 59.185 36.000 2.91 0.79 0.00 4.35
3120 3330 7.147655 ACAGCAATACATAAGTCAGGTACTCAT 60.148 37.037 0.00 0.00 37.50 2.90
3135 3345 6.509418 ACGGTATTCAAAACAGCAATACAT 57.491 33.333 0.00 0.00 35.52 2.29
3169 3379 0.254178 AGCACCCTGTTGCCTGATAG 59.746 55.000 0.00 0.00 44.14 2.08
3268 3478 3.055167 TGATATCATATTGGGAGCCACCG 60.055 47.826 0.00 0.00 40.11 4.94
3348 3558 0.836400 TAGATTCCTCCGGCCCCATC 60.836 60.000 0.00 0.00 0.00 3.51
3357 3567 6.259608 GCATGCATGTATGTATAGATTCCTCC 59.740 42.308 26.79 0.79 31.75 4.30
3382 3592 2.363276 AGGTGGGCATGCACCATG 60.363 61.111 24.61 2.14 43.61 3.66
3383 3593 2.363276 CAGGTGGGCATGCACCAT 60.363 61.111 24.61 9.51 43.61 3.55
3384 3594 2.943369 AAACAGGTGGGCATGCACCA 62.943 55.000 24.61 22.38 43.61 4.17
3385 3595 2.158561 GAAACAGGTGGGCATGCACC 62.159 60.000 19.33 18.21 41.59 5.01
3440 3650 4.394712 GAGGACAGGGCCACGGTG 62.395 72.222 6.18 0.00 0.00 4.94
3492 3702 2.833631 ACTACCACCACTACTTGTGC 57.166 50.000 0.00 0.00 44.92 4.57
3501 3711 5.238583 GCATAGATCCAATACTACCACCAC 58.761 45.833 0.00 0.00 0.00 4.16
3502 3712 4.286032 GGCATAGATCCAATACTACCACCA 59.714 45.833 0.00 0.00 0.00 4.17
3503 3713 4.532521 AGGCATAGATCCAATACTACCACC 59.467 45.833 0.00 0.00 0.00 4.61
3622 3832 2.262572 AAATTTCGATGCGCAAGGAC 57.737 45.000 17.11 5.65 44.26 3.85
3624 3834 2.594321 TCAAAATTTCGATGCGCAAGG 58.406 42.857 17.11 9.82 38.28 3.61
3626 3836 6.144563 TGTTATTTCAAAATTTCGATGCGCAA 59.855 30.769 17.11 0.00 0.00 4.85
3628 3838 6.076772 TGTTATTTCAAAATTTCGATGCGC 57.923 33.333 0.00 0.00 0.00 6.09
3630 3840 8.863049 AGACATGTTATTTCAAAATTTCGATGC 58.137 29.630 0.00 0.00 0.00 3.91
3647 3860 2.355108 GGCTGGCAGAAGAGACATGTTA 60.355 50.000 20.86 0.00 0.00 2.41
3648 3861 1.612726 GGCTGGCAGAAGAGACATGTT 60.613 52.381 20.86 0.00 0.00 2.71
3649 3862 0.035630 GGCTGGCAGAAGAGACATGT 60.036 55.000 20.86 0.00 0.00 3.21
3704 3917 3.128375 CCGGTGGCAAGTGCTTTT 58.872 55.556 2.85 0.00 41.70 2.27
3850 4064 5.531122 AGCTAATAAGTGCTCGTCCATTA 57.469 39.130 0.00 0.00 33.90 1.90
3857 4071 7.698130 AGCAAAAATAAAGCTAATAAGTGCTCG 59.302 33.333 0.00 0.00 38.75 5.03
3864 4078 7.734538 GCACGAGCAAAAATAAAGCTAATAA 57.265 32.000 0.00 0.00 39.02 1.40
3906 4131 3.780804 TTAGGTGCCTTTTCTGTGCTA 57.219 42.857 0.00 0.00 0.00 3.49
3907 4132 2.656947 TTAGGTGCCTTTTCTGTGCT 57.343 45.000 0.00 0.00 0.00 4.40
3922 4147 7.174413 TGATGAGGAGACTGATAGAGATTAGG 58.826 42.308 0.00 0.00 44.43 2.69
3927 4152 6.198237 TCATGATGAGGAGACTGATAGAGA 57.802 41.667 0.00 0.00 44.43 3.10
3930 4155 5.953548 AGGATCATGATGAGGAGACTGATAG 59.046 44.000 14.30 0.00 44.43 2.08
3931 4156 5.901598 AGGATCATGATGAGGAGACTGATA 58.098 41.667 14.30 0.00 44.43 2.15
3936 4161 5.022122 TGGATAGGATCATGATGAGGAGAC 58.978 45.833 14.30 0.00 0.00 3.36
3959 4184 1.191647 GCGCGCGCATAGTTAGTTATT 59.808 47.619 46.11 0.00 41.49 1.40
4333 4569 0.310232 CCGCCGTAGTAGAAGTAGGC 59.690 60.000 0.00 0.00 41.03 3.93
4383 4619 6.183360 CGGCATTTCATTTCATTTTCTTGGAG 60.183 38.462 0.00 0.00 0.00 3.86
4393 4629 1.479323 AGCAGCGGCATTTCATTTCAT 59.521 42.857 12.44 0.00 44.61 2.57
4433 4672 5.576563 TTACTGGATAATACATGGGGGTG 57.423 43.478 0.00 0.00 0.00 4.61
4436 4696 9.807921 AACTAATTTACTGGATAATACATGGGG 57.192 33.333 0.00 0.00 0.00 4.96
4463 4723 1.177401 GAAGGCTTGGGGTGTGAATC 58.823 55.000 3.46 0.00 0.00 2.52
4519 4785 8.015087 CCAAAACTTGAAAACAGAAAGAAAACC 58.985 33.333 0.00 0.00 0.00 3.27
4520 4786 8.556194 ACCAAAACTTGAAAACAGAAAGAAAAC 58.444 29.630 0.00 0.00 0.00 2.43
4522 4788 8.669946 AACCAAAACTTGAAAACAGAAAGAAA 57.330 26.923 0.00 0.00 0.00 2.52
4523 4789 7.115663 CGAACCAAAACTTGAAAACAGAAAGAA 59.884 33.333 0.00 0.00 0.00 2.52
4524 4790 6.584563 CGAACCAAAACTTGAAAACAGAAAGA 59.415 34.615 0.00 0.00 0.00 2.52
4573 4839 1.228367 CACTTGCCTTGCCTCACCT 60.228 57.895 0.00 0.00 0.00 4.00
4574 4840 1.109323 AACACTTGCCTTGCCTCACC 61.109 55.000 0.00 0.00 0.00 4.02
4575 4841 0.746659 AAACACTTGCCTTGCCTCAC 59.253 50.000 0.00 0.00 0.00 3.51
4576 4842 0.746063 CAAACACTTGCCTTGCCTCA 59.254 50.000 0.00 0.00 0.00 3.86
4577 4843 1.032014 TCAAACACTTGCCTTGCCTC 58.968 50.000 0.00 0.00 32.14 4.70
4581 4847 1.021202 TCCGTCAAACACTTGCCTTG 58.979 50.000 0.00 0.00 32.14 3.61
4598 4864 3.441572 CAGAGAACAAACCCACATGATCC 59.558 47.826 0.00 0.00 0.00 3.36
4644 4910 1.059913 ACACTCCTCCCCAGAACAAG 58.940 55.000 0.00 0.00 0.00 3.16
4645 4911 0.764890 CACACTCCTCCCCAGAACAA 59.235 55.000 0.00 0.00 0.00 2.83
4659 4925 4.162320 TCTCTTCAGAAACTTGACCACACT 59.838 41.667 0.00 0.00 0.00 3.55
4691 4957 1.826709 CACCCAACCCAACCAAACC 59.173 57.895 0.00 0.00 0.00 3.27
4709 4975 2.038557 TCACAGGAGAACCCAAGTAAGC 59.961 50.000 0.00 0.00 37.41 3.09
4710 4976 3.325135 AGTCACAGGAGAACCCAAGTAAG 59.675 47.826 0.00 0.00 37.41 2.34
4711 4977 3.314693 AGTCACAGGAGAACCCAAGTAA 58.685 45.455 0.00 0.00 37.41 2.24
4712 4978 2.897969 GAGTCACAGGAGAACCCAAGTA 59.102 50.000 0.00 0.00 37.41 2.24
4713 4979 1.694696 GAGTCACAGGAGAACCCAAGT 59.305 52.381 0.00 0.00 37.41 3.16
4714 4980 1.694150 TGAGTCACAGGAGAACCCAAG 59.306 52.381 0.00 0.00 37.41 3.61
4715 4981 1.694150 CTGAGTCACAGGAGAACCCAA 59.306 52.381 0.00 0.00 42.39 4.12
4716 4982 1.133167 TCTGAGTCACAGGAGAACCCA 60.133 52.381 0.00 0.00 45.76 4.51
4717 4983 1.633774 TCTGAGTCACAGGAGAACCC 58.366 55.000 0.00 0.00 45.76 4.11
4718 4984 3.971245 AATCTGAGTCACAGGAGAACC 57.029 47.619 0.00 0.00 45.76 3.62
4719 4985 7.913674 AAAATAATCTGAGTCACAGGAGAAC 57.086 36.000 0.00 0.00 45.76 3.01
4725 4991 9.092876 GGAGAAGTAAAATAATCTGAGTCACAG 57.907 37.037 0.00 0.00 46.97 3.66
4730 4996 8.552296 ACATGGGAGAAGTAAAATAATCTGAGT 58.448 33.333 0.00 0.00 0.00 3.41
4735 5001 7.556275 TGGTGACATGGGAGAAGTAAAATAATC 59.444 37.037 0.00 0.00 33.40 1.75
4745 5011 2.162681 GGTTTGGTGACATGGGAGAAG 58.837 52.381 0.00 0.00 42.32 2.85
4761 5027 2.945668 GCACAACTTGACAGAGAGGTTT 59.054 45.455 0.00 0.00 0.00 3.27
4795 5074 2.791347 TACAATAACACATGCCGGGT 57.209 45.000 2.18 0.00 0.00 5.28
4799 5106 8.408601 AGAAATCAGAATACAATAACACATGCC 58.591 33.333 0.00 0.00 0.00 4.40
4830 5137 4.023450 GCTAACACTTGGTTACCCACTTTC 60.023 45.833 0.00 0.00 41.67 2.62
4895 5202 2.009042 GCTAGCTAGTGTGCCACCAAG 61.009 57.143 21.62 0.00 34.49 3.61
4924 5234 3.480470 CACTTTTCACAGGTGATGGTCT 58.520 45.455 2.52 0.00 39.64 3.85
4925 5235 2.030805 GCACTTTTCACAGGTGATGGTC 60.031 50.000 2.52 0.00 39.64 4.02
4926 5236 1.956477 GCACTTTTCACAGGTGATGGT 59.044 47.619 2.52 0.59 39.64 3.55
4938 5532 3.347216 TCCTATTCCTGCTGCACTTTTC 58.653 45.455 0.00 0.00 0.00 2.29
4980 5574 1.294780 CTGCCACTCACTCAGGTCC 59.705 63.158 0.00 0.00 0.00 4.46
4982 5576 2.219875 CCCTGCCACTCACTCAGGT 61.220 63.158 6.74 0.00 44.41 4.00
4983 5577 1.897225 CTCCCTGCCACTCACTCAGG 61.897 65.000 0.00 0.00 45.24 3.86
5031 5625 0.605319 TTGCGATGTGAACTCCACCC 60.605 55.000 0.00 0.00 45.09 4.61
5046 5640 0.719465 AATCCGTAAACTCGCTTGCG 59.281 50.000 8.87 8.87 34.64 4.85
5161 5763 3.609853 TCCATTACAGCATGGTCAGAAC 58.390 45.455 0.00 0.00 43.94 3.01
5204 5808 3.190535 CCACAACCAATAGCACCAGTAAC 59.809 47.826 0.00 0.00 0.00 2.50
5210 5814 1.202348 GAAGCCACAACCAATAGCACC 59.798 52.381 0.00 0.00 0.00 5.01
5240 6031 1.278637 GTTGACTTGGTTGCGACGG 59.721 57.895 0.00 0.00 0.00 4.79
5265 6056 5.278364 GCATGGATGTTGATGGAGAAGAATC 60.278 44.000 0.00 0.00 0.00 2.52
5284 6075 5.885230 TTCTTAGAAGAATGTGTGCATGG 57.115 39.130 0.46 0.00 39.95 3.66
5293 6084 7.754027 CCAGCACTTCAATTTCTTAGAAGAATG 59.246 37.037 5.57 2.99 43.92 2.67
5304 6095 6.515272 TTCCTATTCCAGCACTTCAATTTC 57.485 37.500 0.00 0.00 0.00 2.17
5315 6107 1.338020 CGCCCATTTTCCTATTCCAGC 59.662 52.381 0.00 0.00 0.00 4.85
5318 6110 1.602377 CGTCGCCCATTTTCCTATTCC 59.398 52.381 0.00 0.00 0.00 3.01
5328 6120 2.325082 GCACAGTTCGTCGCCCATT 61.325 57.895 0.00 0.00 0.00 3.16
5329 6121 2.742372 GCACAGTTCGTCGCCCAT 60.742 61.111 0.00 0.00 0.00 4.00
5335 6127 3.803555 CTCAATTTCTGCACAGTTCGTC 58.196 45.455 0.00 0.00 0.00 4.20
5337 6129 2.031769 TGCTCAATTTCTGCACAGTTCG 60.032 45.455 0.00 0.00 0.00 3.95
5345 6137 1.981533 GTTTCGCTGCTCAATTTCTGC 59.018 47.619 0.00 0.00 0.00 4.26
5347 6139 1.197721 CGGTTTCGCTGCTCAATTTCT 59.802 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.