Multiple sequence alignment - TraesCS2A01G183900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G183900 chr2A 100.000 3956 0 0 1 3956 144260778 144264733 0.000000e+00 7306
1 TraesCS2A01G183900 chr2A 82.319 1397 199 29 1583 2957 83691169 83689799 0.000000e+00 1168
2 TraesCS2A01G183900 chr2A 81.601 587 96 8 2372 2957 83652017 83651442 3.580000e-130 475
3 TraesCS2A01G183900 chr2A 81.167 600 91 17 1849 2427 83747442 83748040 2.780000e-126 462
4 TraesCS2A01G183900 chr2D 92.990 4023 138 45 1 3956 136164983 136168928 0.000000e+00 5734
5 TraesCS2A01G183900 chr2D 83.484 884 126 14 2084 2957 83064663 83065536 0.000000e+00 806
6 TraesCS2A01G183900 chr2B 91.000 4022 195 56 1 3956 194377721 194381641 0.000000e+00 5267
7 TraesCS2A01G183900 chr2B 83.453 1390 191 22 1583 2957 134702967 134704332 0.000000e+00 1256
8 TraesCS2A01G183900 chr2B 95.977 522 21 0 1601 2122 784041198 784040677 0.000000e+00 848
9 TraesCS2A01G183900 chrUn 91.798 2024 109 26 1808 3801 69740087 69738091 0.000000e+00 2765
10 TraesCS2A01G183900 chrUn 81.350 815 134 15 1769 2576 18025957 18025154 0.000000e+00 647
11 TraesCS2A01G183900 chr5D 90.301 2093 98 33 1808 3876 362898016 362896005 0.000000e+00 2643
12 TraesCS2A01G183900 chr5A 94.081 1301 45 14 1808 3088 464195571 464196859 0.000000e+00 1947
13 TraesCS2A01G183900 chr5A 90.263 380 26 8 3435 3809 464199410 464199783 1.650000e-133 486
14 TraesCS2A01G183900 chr5A 90.722 194 8 4 3092 3285 464198713 464198896 2.360000e-62 250
15 TraesCS2A01G183900 chr3A 92.720 522 37 1 1601 2122 29620550 29620030 0.000000e+00 752


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G183900 chr2A 144260778 144264733 3955 False 7306.000000 7306 100.000000 1 3956 1 chr2A.!!$F2 3955
1 TraesCS2A01G183900 chr2A 83689799 83691169 1370 True 1168.000000 1168 82.319000 1583 2957 1 chr2A.!!$R2 1374
2 TraesCS2A01G183900 chr2A 83651442 83652017 575 True 475.000000 475 81.601000 2372 2957 1 chr2A.!!$R1 585
3 TraesCS2A01G183900 chr2A 83747442 83748040 598 False 462.000000 462 81.167000 1849 2427 1 chr2A.!!$F1 578
4 TraesCS2A01G183900 chr2D 136164983 136168928 3945 False 5734.000000 5734 92.990000 1 3956 1 chr2D.!!$F2 3955
5 TraesCS2A01G183900 chr2D 83064663 83065536 873 False 806.000000 806 83.484000 2084 2957 1 chr2D.!!$F1 873
6 TraesCS2A01G183900 chr2B 194377721 194381641 3920 False 5267.000000 5267 91.000000 1 3956 1 chr2B.!!$F2 3955
7 TraesCS2A01G183900 chr2B 134702967 134704332 1365 False 1256.000000 1256 83.453000 1583 2957 1 chr2B.!!$F1 1374
8 TraesCS2A01G183900 chr2B 784040677 784041198 521 True 848.000000 848 95.977000 1601 2122 1 chr2B.!!$R1 521
9 TraesCS2A01G183900 chrUn 69738091 69740087 1996 True 2765.000000 2765 91.798000 1808 3801 1 chrUn.!!$R2 1993
10 TraesCS2A01G183900 chrUn 18025154 18025957 803 True 647.000000 647 81.350000 1769 2576 1 chrUn.!!$R1 807
11 TraesCS2A01G183900 chr5D 362896005 362898016 2011 True 2643.000000 2643 90.301000 1808 3876 1 chr5D.!!$R1 2068
12 TraesCS2A01G183900 chr5A 464195571 464199783 4212 False 894.333333 1947 91.688667 1808 3809 3 chr5A.!!$F1 2001
13 TraesCS2A01G183900 chr3A 29620030 29620550 520 True 752.000000 752 92.720000 1601 2122 1 chr3A.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 477 0.179124 CGCTCTCCCAACTACTGAGC 60.179 60.0 0.0 0.0 44.49 4.26 F
891 922 0.613777 AACATTCCTGACCCTCGTCC 59.386 55.0 0.0 0.0 38.32 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1531 1.004277 TGGACTGCCACCCAAGATTAC 59.996 52.381 0.0 0.0 39.92 1.89 R
3038 3143 1.082038 CTACTAGCCGATGCCGACG 60.082 63.158 0.0 0.0 38.69 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 114 3.667282 GCACAGGCACAGGCACAG 61.667 66.667 0.00 0.00 43.71 3.66
102 115 2.981909 CACAGGCACAGGCACAGG 60.982 66.667 0.00 0.00 43.71 4.00
103 116 4.962836 ACAGGCACAGGCACAGGC 62.963 66.667 0.00 0.00 43.71 4.85
358 378 2.234661 CAGGCCCCAATTTTTCTTCTCC 59.765 50.000 0.00 0.00 0.00 3.71
365 385 4.464244 CCCAATTTTTCTTCTCCTTCTCCC 59.536 45.833 0.00 0.00 0.00 4.30
439 470 1.228894 TCCAGTCGCTCTCCCAACT 60.229 57.895 0.00 0.00 0.00 3.16
443 474 1.135257 CAGTCGCTCTCCCAACTACTG 60.135 57.143 0.00 0.00 0.00 2.74
446 477 0.179124 CGCTCTCCCAACTACTGAGC 60.179 60.000 0.00 0.00 44.49 4.26
515 546 3.892581 GCATAACCGCTGCTGCCC 61.893 66.667 10.24 0.00 36.68 5.36
517 548 4.506255 ATAACCGCTGCTGCCCCC 62.506 66.667 10.24 0.00 35.36 5.40
588 619 1.802715 GATGCGTGCACACAATGGC 60.803 57.895 18.64 11.37 0.00 4.40
750 781 0.778223 CGTATGTCATCGCATGTCCG 59.222 55.000 0.00 0.00 0.00 4.79
852 883 1.346722 ACACAGGCTTAGTACCACCAC 59.653 52.381 0.00 0.00 0.00 4.16
853 884 1.346395 CACAGGCTTAGTACCACCACA 59.654 52.381 0.00 0.00 0.00 4.17
854 885 1.623811 ACAGGCTTAGTACCACCACAG 59.376 52.381 0.00 0.00 0.00 3.66
888 919 0.804989 GCAAACATTCCTGACCCTCG 59.195 55.000 0.00 0.00 0.00 4.63
890 921 2.076863 CAAACATTCCTGACCCTCGTC 58.923 52.381 0.00 0.00 39.66 4.20
891 922 0.613777 AACATTCCTGACCCTCGTCC 59.386 55.000 0.00 0.00 38.32 4.79
892 923 1.265454 ACATTCCTGACCCTCGTCCC 61.265 60.000 0.00 0.00 38.32 4.46
928 962 0.818040 ATCCGGCCGGCATTCTTTAC 60.818 55.000 39.89 6.91 34.68 2.01
932 966 1.306148 GGCCGGCATTCTTTACCTAC 58.694 55.000 30.85 0.98 0.00 3.18
953 987 2.275318 CTGCTACAAGCTCTAGCCAAC 58.725 52.381 16.87 0.00 42.97 3.77
967 1001 2.049156 CAACCTCACAGCTCGCGA 60.049 61.111 9.26 9.26 0.00 5.87
1477 1511 1.414919 TGAACCTGTAAGTCGGCACTT 59.585 47.619 0.00 7.34 45.39 3.16
1518 1552 0.038744 AATCTTGGGTGGCAGTCCAG 59.961 55.000 9.11 5.25 44.48 3.86
1528 1562 1.063341 TGGCAGTCCAGAGCTAGAGAT 60.063 52.381 0.00 0.00 37.47 2.75
1581 1615 6.459298 CCAATGTTTCTTGCAGATATCTGTCC 60.459 42.308 28.92 16.60 45.45 4.02
1587 1621 0.037790 GCAGATATCTGTCCGGGCTC 60.038 60.000 28.92 10.09 45.45 4.70
2269 2333 1.609794 GAGTTCCTCCCCGTGGACT 60.610 63.158 0.00 0.00 35.03 3.85
2270 2334 1.605971 GAGTTCCTCCCCGTGGACTC 61.606 65.000 0.00 0.00 35.03 3.36
3076 3181 6.053005 AGTAGTAGCAGTAGCAGTAGAAGAG 58.947 44.000 0.00 0.00 45.49 2.85
3086 5043 2.223249 GCAGTAGAAGAGCGAGAGTGAG 60.223 54.545 0.00 0.00 0.00 3.51
3087 5044 3.006940 CAGTAGAAGAGCGAGAGTGAGT 58.993 50.000 0.00 0.00 0.00 3.41
3088 5045 4.185394 CAGTAGAAGAGCGAGAGTGAGTA 58.815 47.826 0.00 0.00 0.00 2.59
3089 5046 4.033587 CAGTAGAAGAGCGAGAGTGAGTAC 59.966 50.000 0.00 0.00 0.00 2.73
3090 5047 2.004017 AGAAGAGCGAGAGTGAGTACG 58.996 52.381 0.00 0.00 0.00 3.67
3150 5117 5.410132 TGGTTAATGGTTGATGTAACAGTCG 59.590 40.000 0.00 0.00 41.18 4.18
3212 5179 2.759191 TGATGTGCTTGTCTGTCTGTC 58.241 47.619 0.00 0.00 0.00 3.51
3213 5180 2.366590 TGATGTGCTTGTCTGTCTGTCT 59.633 45.455 0.00 0.00 0.00 3.41
3214 5181 2.229675 TGTGCTTGTCTGTCTGTCTG 57.770 50.000 0.00 0.00 0.00 3.51
3215 5182 1.482182 TGTGCTTGTCTGTCTGTCTGT 59.518 47.619 0.00 0.00 0.00 3.41
3216 5183 2.693074 TGTGCTTGTCTGTCTGTCTGTA 59.307 45.455 0.00 0.00 0.00 2.74
3217 5184 3.321968 TGTGCTTGTCTGTCTGTCTGTAT 59.678 43.478 0.00 0.00 0.00 2.29
3218 5185 3.923461 GTGCTTGTCTGTCTGTCTGTATC 59.077 47.826 0.00 0.00 0.00 2.24
3219 5186 3.829026 TGCTTGTCTGTCTGTCTGTATCT 59.171 43.478 0.00 0.00 0.00 1.98
3233 5204 7.399478 TCTGTCTGTATCTATCTATCGGGAGTA 59.601 40.741 0.00 0.00 0.00 2.59
3235 5206 7.180587 TGTCTGTATCTATCTATCGGGAGTACT 59.819 40.741 0.00 0.00 0.00 2.73
3238 5209 9.316730 CTGTATCTATCTATCGGGAGTACTTAC 57.683 40.741 0.00 0.00 0.00 2.34
3240 5211 6.352016 TCTATCTATCGGGAGTACTTACGT 57.648 41.667 16.40 0.00 0.00 3.57
3241 5212 7.468141 TCTATCTATCGGGAGTACTTACGTA 57.532 40.000 16.40 0.00 0.00 3.57
3242 5213 8.072321 TCTATCTATCGGGAGTACTTACGTAT 57.928 38.462 16.40 12.08 0.00 3.06
3243 5214 6.981762 ATCTATCGGGAGTACTTACGTATG 57.018 41.667 16.40 6.91 0.00 2.39
3244 5215 6.101650 TCTATCGGGAGTACTTACGTATGA 57.898 41.667 14.77 11.24 0.00 2.15
3245 5216 6.705302 TCTATCGGGAGTACTTACGTATGAT 58.295 40.000 14.77 8.05 0.00 2.45
3301 5289 5.589192 ACCGTACTGTACTTGCAAGATATC 58.411 41.667 32.50 17.79 0.00 1.63
3374 5670 4.151798 GCCGATTGTTCTTTCTTTCTTCG 58.848 43.478 0.00 0.00 0.00 3.79
3415 5719 0.040958 CGTTTTGCCACTGTGAGAGC 60.041 55.000 9.86 4.95 0.00 4.09
3457 5802 2.464157 AGTGTTAGCAAGAGGAGCAC 57.536 50.000 0.00 0.00 0.00 4.40
3460 5805 2.481952 GTGTTAGCAAGAGGAGCACAAG 59.518 50.000 0.00 0.00 0.00 3.16
3471 5816 1.623973 GAGCACAAGTAACCGCGTCC 61.624 60.000 4.92 0.00 0.00 4.79
3580 5945 2.164422 CGTGAATGAGAGCTGTCTGGTA 59.836 50.000 12.66 0.00 30.97 3.25
3613 5978 2.628972 GCATTGTGCGATGTTGACG 58.371 52.632 0.00 0.00 31.71 4.35
3630 5995 3.785486 TGACGCTTGATTAGACCAGATG 58.215 45.455 0.00 0.00 0.00 2.90
3713 6082 1.588403 CGATCCTGCTGTCTGCGAG 60.588 63.158 0.00 0.00 46.63 5.03
3760 6130 1.946984 TGAATGGTCTTCGGGGTACT 58.053 50.000 0.00 0.00 0.00 2.73
3761 6131 1.553248 TGAATGGTCTTCGGGGTACTG 59.447 52.381 0.00 0.00 0.00 2.74
3762 6132 1.553704 GAATGGTCTTCGGGGTACTGT 59.446 52.381 0.00 0.00 0.00 3.55
3774 6144 3.593096 GGGGTACTGTTGTTGCTAGTAC 58.407 50.000 0.00 0.00 43.66 2.73
3823 6194 2.939022 GGTCAGTGCTGTTGCGTC 59.061 61.111 0.00 0.00 43.34 5.19
3842 6213 1.515304 GCGTCTCCTCTGCTCGTTC 60.515 63.158 0.00 0.00 0.00 3.95
3856 6233 1.213013 CGTTCTCCACCGAGTCCAG 59.787 63.158 0.00 0.00 37.40 3.86
3876 6253 5.098893 CCAGACTGAGACGATTTCTACTTG 58.901 45.833 3.32 0.00 33.22 3.16
3930 6308 5.129650 CCCCAAAAGTTTTGTCTAAAAGGGA 59.870 40.000 22.40 0.00 37.98 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.516195 GGAGCGGCGAGACCTTCC 62.516 72.222 12.98 3.09 35.61 3.46
14 15 3.760035 TGGAGCGGCGAGACCTTC 61.760 66.667 12.98 0.00 35.61 3.46
15 16 4.070552 GTGGAGCGGCGAGACCTT 62.071 66.667 12.98 0.00 35.61 3.50
61 65 0.664761 CCTGCATTATTGGGCGTGAG 59.335 55.000 0.00 0.00 0.00 3.51
62 66 1.383456 GCCTGCATTATTGGGCGTGA 61.383 55.000 0.00 0.00 35.08 4.35
63 67 1.066257 GCCTGCATTATTGGGCGTG 59.934 57.895 0.00 0.00 35.08 5.34
64 68 1.379710 TGCCTGCATTATTGGGCGT 60.380 52.632 7.78 0.00 46.72 5.68
235 248 3.766691 GCAACATGCAGCAGGGGG 61.767 66.667 12.54 3.91 44.26 5.40
338 352 2.112511 AGGAGAAGAAAAATTGGGGCCT 59.887 45.455 0.84 0.00 0.00 5.19
339 353 2.540383 AGGAGAAGAAAAATTGGGGCC 58.460 47.619 0.00 0.00 0.00 5.80
358 378 2.890847 ATCGCGAACGCAGGGAGAAG 62.891 60.000 15.24 0.61 42.06 2.85
439 470 4.753662 ACCGCTCGGGGCTCAGTA 62.754 66.667 13.31 0.00 41.60 2.74
515 546 1.024271 CGTTCCATGCATGTAAGGGG 58.976 55.000 24.58 8.99 0.00 4.79
517 548 1.064505 CTGCGTTCCATGCATGTAAGG 59.935 52.381 24.58 20.69 39.71 2.69
518 549 2.009051 TCTGCGTTCCATGCATGTAAG 58.991 47.619 24.58 14.97 39.71 2.34
588 619 2.699954 AGGATACGAGTGCCAAAGTTG 58.300 47.619 0.00 0.00 46.39 3.16
826 857 3.258372 TGGTACTAAGCCTGTGTCAGAAG 59.742 47.826 0.00 0.00 32.44 2.85
852 883 2.960659 CTCGATCGGCTGCTGCTG 60.961 66.667 16.41 17.69 46.48 4.41
853 884 4.887987 GCTCGATCGGCTGCTGCT 62.888 66.667 16.41 0.00 39.59 4.24
888 919 1.233659 GTAGGAGGGAGGGAGGGAC 59.766 68.421 0.00 0.00 0.00 4.46
890 921 2.198980 CGTAGGAGGGAGGGAGGG 59.801 72.222 0.00 0.00 0.00 4.30
891 922 2.522193 GCGTAGGAGGGAGGGAGG 60.522 72.222 0.00 0.00 0.00 4.30
892 923 1.152440 ATGCGTAGGAGGGAGGGAG 60.152 63.158 0.00 0.00 0.00 4.30
928 962 2.035321 GCTAGAGCTTGTAGCAGGTAGG 59.965 54.545 19.23 0.00 45.56 3.18
932 966 0.826715 TGGCTAGAGCTTGTAGCAGG 59.173 55.000 23.30 0.00 45.56 4.85
953 987 2.653448 CGATCGCGAGCTGTGAGG 60.653 66.667 23.21 1.06 41.19 3.86
967 1001 0.102120 GACACTAGCAGAGCAGCGAT 59.898 55.000 0.00 0.00 40.15 4.58
1497 1531 1.004277 TGGACTGCCACCCAAGATTAC 59.996 52.381 0.00 0.00 39.92 1.89
1528 1562 5.520376 TCGATCAATCAATCAGTAGCTGA 57.480 39.130 0.00 1.06 44.99 4.26
1581 1615 3.665675 CTTCCCCTTGTCGAGCCCG 62.666 68.421 0.00 0.00 37.07 6.13
1587 1621 3.330720 AGGCCCTTCCCCTTGTCG 61.331 66.667 0.00 0.00 34.51 4.35
3037 3142 3.190323 TACTAGCCGATGCCGACGC 62.190 63.158 0.00 0.00 38.69 5.19
3038 3143 1.082038 CTACTAGCCGATGCCGACG 60.082 63.158 0.00 0.00 38.69 5.12
3039 3144 1.197264 CTACTACTAGCCGATGCCGAC 59.803 57.143 0.00 0.00 38.69 4.79
3040 3145 1.520494 CTACTACTAGCCGATGCCGA 58.480 55.000 0.00 0.00 38.69 5.54
3041 3146 0.109689 GCTACTACTAGCCGATGCCG 60.110 60.000 0.00 0.00 39.79 5.69
3042 3147 0.959553 TGCTACTACTAGCCGATGCC 59.040 55.000 0.00 0.00 44.45 4.40
3043 3148 1.609555 ACTGCTACTACTAGCCGATGC 59.390 52.381 0.00 0.00 44.45 3.91
3076 3181 1.514443 GCACCGTACTCACTCTCGC 60.514 63.158 0.00 0.00 0.00 5.03
3086 5043 0.802494 CATCAAAGGTGGCACCGTAC 59.198 55.000 29.76 7.28 44.90 3.67
3087 5044 0.958382 GCATCAAAGGTGGCACCGTA 60.958 55.000 29.76 14.10 44.90 4.02
3088 5045 2.268076 GCATCAAAGGTGGCACCGT 61.268 57.895 29.76 25.02 44.90 4.83
3089 5046 0.676466 TAGCATCAAAGGTGGCACCG 60.676 55.000 29.76 16.76 44.90 4.94
3090 5047 1.098050 CTAGCATCAAAGGTGGCACC 58.902 55.000 29.32 29.32 38.99 5.01
3150 5117 3.963428 ATCATACTCCCGCAGTAATCC 57.037 47.619 0.00 0.00 41.17 3.01
3160 5127 8.641498 AACCATCAATCATTAATCATACTCCC 57.359 34.615 0.00 0.00 0.00 4.30
3212 5179 9.316730 GTAAGTACTCCCGATAGATAGATACAG 57.683 40.741 0.00 0.00 39.76 2.74
3213 5180 7.978414 CGTAAGTACTCCCGATAGATAGATACA 59.022 40.741 8.08 0.00 39.76 2.29
3214 5181 8.351495 CGTAAGTACTCCCGATAGATAGATAC 57.649 42.308 8.08 0.00 39.76 2.24
3238 5209 8.552865 TCCGTGGATTAATTAACAAATCATACG 58.447 33.333 19.94 19.94 40.27 3.06
3241 5212 8.744652 TGTTCCGTGGATTAATTAACAAATCAT 58.255 29.630 0.00 0.00 34.44 2.45
3242 5213 8.112016 TGTTCCGTGGATTAATTAACAAATCA 57.888 30.769 0.00 0.00 34.44 2.57
3243 5214 9.019764 CATGTTCCGTGGATTAATTAACAAATC 57.980 33.333 0.00 0.00 0.00 2.17
3244 5215 7.491048 GCATGTTCCGTGGATTAATTAACAAAT 59.509 33.333 0.00 0.00 0.00 2.32
3245 5216 6.809196 GCATGTTCCGTGGATTAATTAACAAA 59.191 34.615 0.00 0.00 0.00 2.83
3258 5229 0.893270 TTTGGAGGCATGTTCCGTGG 60.893 55.000 12.02 0.00 37.54 4.94
3301 5289 4.580580 GCTAGTGAACAATAATTGGGGGAG 59.419 45.833 0.00 0.00 34.12 4.30
3351 5647 3.813529 AGAAAGAAAGAACAATCGGCG 57.186 42.857 0.00 0.00 0.00 6.46
3374 5670 3.368427 GGAAAGGCCAAAAGCAGGATAAC 60.368 47.826 5.01 0.00 46.50 1.89
3415 5719 2.724708 GACGAGCAGCAGCAACGAG 61.725 63.158 22.02 4.27 45.49 4.18
3580 5945 4.330074 GCACAATGCATCTACGTAACTCTT 59.670 41.667 0.00 0.00 44.26 2.85
3613 5978 2.158696 AGCCCATCTGGTCTAATCAAGC 60.159 50.000 0.00 0.00 36.04 4.01
3630 5995 4.170947 GGCCTGATCATCAAGCCC 57.829 61.111 15.71 0.00 45.87 5.19
3733 6102 4.442192 CCCCGAAGACCATTCAAACAAAAA 60.442 41.667 0.00 0.00 0.00 1.94
3760 6130 1.667756 CCGCTCGTACTAGCAACAACA 60.668 52.381 18.38 0.00 42.91 3.33
3761 6131 0.989890 CCGCTCGTACTAGCAACAAC 59.010 55.000 18.38 0.00 42.91 3.32
3762 6132 0.883153 TCCGCTCGTACTAGCAACAA 59.117 50.000 18.38 0.00 42.91 2.83
3774 6144 2.635229 AAGCATAGCTGGTCCGCTCG 62.635 60.000 10.85 6.22 39.62 5.03
3787 6157 0.721154 CGCGCAGTCAAGAAAGCATA 59.279 50.000 8.75 0.00 0.00 3.14
3823 6194 3.329688 AACGAGCAGAGGAGACGCG 62.330 63.158 3.53 3.53 34.13 6.01
3842 6213 0.609406 TCAGTCTGGACTCGGTGGAG 60.609 60.000 0.00 0.00 46.13 3.86
3856 6233 4.486090 TGCAAGTAGAAATCGTCTCAGTC 58.514 43.478 0.00 0.00 37.84 3.51
3876 6253 0.811616 ACAAAGGGAGCGATCGATGC 60.812 55.000 21.57 19.20 0.00 3.91
3930 6308 1.975407 CGTACCAGGGACGGTCACT 60.975 63.158 17.53 7.19 40.67 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.