Multiple sequence alignment - TraesCS2A01G182100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G182100 chr2A 100.000 2944 0 0 1 2944 141287079 141284136 0.000000e+00 5437
1 TraesCS2A01G182100 chr2A 89.333 375 31 5 1 367 513311779 513311406 2.070000e-126 462
2 TraesCS2A01G182100 chr2A 93.064 173 12 0 1154 1326 141285872 141285700 1.350000e-63 254
3 TraesCS2A01G182100 chr2A 93.064 173 12 0 1208 1380 141285926 141285754 1.350000e-63 254
4 TraesCS2A01G182100 chr2D 93.201 956 45 4 1208 2145 133275995 133275042 0.000000e+00 1387
5 TraesCS2A01G182100 chr2D 92.247 503 28 3 842 1333 133276318 133275816 0.000000e+00 702
6 TraesCS2A01G182100 chr2D 79.346 765 83 39 2207 2944 133274431 133273715 4.440000e-128 468
7 TraesCS2A01G182100 chr2D 96.537 231 7 1 369 599 133282330 133282101 5.950000e-102 381
8 TraesCS2A01G182100 chr2D 88.983 236 6 6 608 843 133276604 133276389 1.040000e-69 274
9 TraesCS2A01G182100 chr2D 92.857 126 9 0 1154 1279 133275941 133275816 1.800000e-42 183
10 TraesCS2A01G182100 chr2B 86.194 804 51 24 1208 1952 189748790 189747988 0.000000e+00 815
11 TraesCS2A01G182100 chr2B 94.043 470 22 4 374 842 189749636 189749172 0.000000e+00 708
12 TraesCS2A01G182100 chr2B 91.897 506 26 5 842 1333 189749106 189748602 0.000000e+00 693
13 TraesCS2A01G182100 chr2B 78.713 808 76 39 2153 2944 189747262 189746535 4.470000e-123 451
14 TraesCS2A01G182100 chr2B 86.732 407 27 14 1 383 532356651 532357054 7.540000e-116 427
15 TraesCS2A01G182100 chr2B 85.965 171 18 3 1976 2145 189747999 189747834 8.380000e-41 178
16 TraesCS2A01G182100 chr6A 90.663 407 15 7 1 385 284963257 284963662 1.210000e-143 520
17 TraesCS2A01G182100 chr4A 91.392 395 11 8 1 373 169940633 169940240 1.210000e-143 520
18 TraesCS2A01G182100 chr4A 91.711 374 23 3 1 367 455757891 455758263 2.020000e-141 512
19 TraesCS2A01G182100 chr7D 91.689 373 23 6 1 367 380010506 380010136 7.280000e-141 510
20 TraesCS2A01G182100 chr5D 91.223 376 21 5 1 367 125886926 125886554 4.380000e-138 501
21 TraesCS2A01G182100 chr3A 90.909 374 26 4 1 367 251558132 251558504 2.040000e-136 496
22 TraesCS2A01G182100 chr3A 89.239 381 32 6 1 373 73903671 73903292 4.440000e-128 468
23 TraesCS2A01G182100 chr1A 89.130 414 21 7 1 391 114901517 114901105 7.330000e-136 494
24 TraesCS2A01G182100 chr1A 88.451 381 32 6 1 370 203354024 203354403 1.610000e-122 449
25 TraesCS2A01G182100 chr4D 89.362 376 28 5 1 367 274307279 274307651 2.070000e-126 462
26 TraesCS2A01G182100 chr5A 89.005 382 28 7 1 369 219373139 219372759 7.430000e-126 460
27 TraesCS2A01G182100 chr7A 89.067 375 31 6 1 367 457349655 457349283 9.620000e-125 457
28 TraesCS2A01G182100 chr7A 81.795 390 46 15 1 372 312257613 312257231 1.330000e-78 303
29 TraesCS2A01G182100 chr6D 87.792 385 27 10 1 372 115117742 115117365 1.620000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G182100 chr2A 141284136 141287079 2943 True 1981.666667 5437 95.3760 1 2944 3 chr2A.!!$R2 2943
1 TraesCS2A01G182100 chr2D 133273715 133276604 2889 True 602.800000 1387 89.3268 608 2944 5 chr2D.!!$R2 2336
2 TraesCS2A01G182100 chr2B 189746535 189749636 3101 True 569.000000 815 87.3624 374 2944 5 chr2B.!!$R1 2570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.186873 GGGGTCATCTCCGGTAGGTA 59.813 60.0 0.0 0.0 39.05 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2283 0.656205 GTGCACGCGTTGGTACTTTG 60.656 55.0 10.22 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.386867 TTCGCTCGAAGACATAGGATTT 57.613 40.909 0.02 0.00 0.00 2.17
31 32 4.386867 TCGCTCGAAGACATAGGATTTT 57.613 40.909 0.00 0.00 0.00 1.82
32 33 4.112634 TCGCTCGAAGACATAGGATTTTG 58.887 43.478 0.00 0.00 0.00 2.44
33 34 3.246226 CGCTCGAAGACATAGGATTTTGG 59.754 47.826 0.00 0.00 0.00 3.28
34 35 4.192317 GCTCGAAGACATAGGATTTTGGT 58.808 43.478 0.00 0.00 0.00 3.67
35 36 4.636206 GCTCGAAGACATAGGATTTTGGTT 59.364 41.667 0.00 0.00 0.00 3.67
36 37 5.815740 GCTCGAAGACATAGGATTTTGGTTA 59.184 40.000 0.00 0.00 0.00 2.85
37 38 6.315393 GCTCGAAGACATAGGATTTTGGTTAA 59.685 38.462 0.00 0.00 0.00 2.01
38 39 7.466050 GCTCGAAGACATAGGATTTTGGTTAAG 60.466 40.741 0.00 0.00 0.00 1.85
39 40 6.315393 TCGAAGACATAGGATTTTGGTTAAGC 59.685 38.462 0.00 0.00 0.00 3.09
40 41 6.093495 CGAAGACATAGGATTTTGGTTAAGCA 59.907 38.462 2.54 2.54 0.00 3.91
41 42 7.201732 CGAAGACATAGGATTTTGGTTAAGCAT 60.202 37.037 8.40 0.00 0.00 3.79
42 43 7.573968 AGACATAGGATTTTGGTTAAGCATC 57.426 36.000 8.40 3.23 0.00 3.91
43 44 7.118723 AGACATAGGATTTTGGTTAAGCATCA 58.881 34.615 8.40 0.00 0.00 3.07
44 45 7.067494 AGACATAGGATTTTGGTTAAGCATCAC 59.933 37.037 8.40 1.28 0.00 3.06
45 46 6.891908 ACATAGGATTTTGGTTAAGCATCACT 59.108 34.615 8.40 5.79 0.00 3.41
46 47 7.397192 ACATAGGATTTTGGTTAAGCATCACTT 59.603 33.333 8.40 0.79 42.76 3.16
47 48 6.272822 AGGATTTTGGTTAAGCATCACTTC 57.727 37.500 8.40 2.29 39.97 3.01
48 49 5.774690 AGGATTTTGGTTAAGCATCACTTCA 59.225 36.000 8.40 0.00 39.97 3.02
49 50 6.071728 AGGATTTTGGTTAAGCATCACTTCAG 60.072 38.462 8.40 0.00 39.97 3.02
50 51 6.294731 GGATTTTGGTTAAGCATCACTTCAGT 60.295 38.462 8.40 0.00 39.97 3.41
51 52 5.689383 TTTGGTTAAGCATCACTTCAGTC 57.311 39.130 8.40 0.00 39.97 3.51
52 53 4.350368 TGGTTAAGCATCACTTCAGTCA 57.650 40.909 2.54 0.00 39.97 3.41
53 54 4.910195 TGGTTAAGCATCACTTCAGTCAT 58.090 39.130 2.54 0.00 39.97 3.06
54 55 5.316167 TGGTTAAGCATCACTTCAGTCATT 58.684 37.500 2.54 0.00 39.97 2.57
55 56 5.412594 TGGTTAAGCATCACTTCAGTCATTC 59.587 40.000 2.54 0.00 39.97 2.67
56 57 5.645497 GGTTAAGCATCACTTCAGTCATTCT 59.355 40.000 0.00 0.00 39.97 2.40
57 58 6.402983 GGTTAAGCATCACTTCAGTCATTCTG 60.403 42.308 0.00 0.00 44.85 3.02
71 72 5.613358 GTCATTCTGACTGGTTTACTTGG 57.387 43.478 0.07 0.00 43.73 3.61
72 73 5.305585 GTCATTCTGACTGGTTTACTTGGA 58.694 41.667 0.07 0.00 43.73 3.53
73 74 5.179555 GTCATTCTGACTGGTTTACTTGGAC 59.820 44.000 0.07 0.00 43.73 4.02
74 75 3.764237 TCTGACTGGTTTACTTGGACC 57.236 47.619 0.00 0.00 36.45 4.46
75 76 2.370849 TCTGACTGGTTTACTTGGACCC 59.629 50.000 0.00 0.00 34.99 4.46
76 77 1.422402 TGACTGGTTTACTTGGACCCC 59.578 52.381 0.00 0.00 34.99 4.95
77 78 1.422402 GACTGGTTTACTTGGACCCCA 59.578 52.381 0.00 0.00 34.99 4.96
78 79 1.144298 ACTGGTTTACTTGGACCCCAC 59.856 52.381 0.00 0.00 34.99 4.61
79 80 1.423921 CTGGTTTACTTGGACCCCACT 59.576 52.381 0.00 0.00 34.99 4.00
80 81 1.854280 TGGTTTACTTGGACCCCACTT 59.146 47.619 0.00 0.00 34.99 3.16
81 82 3.054576 TGGTTTACTTGGACCCCACTTA 58.945 45.455 0.00 0.00 34.99 2.24
82 83 3.462579 TGGTTTACTTGGACCCCACTTAA 59.537 43.478 0.00 0.00 34.99 1.85
83 84 3.822735 GGTTTACTTGGACCCCACTTAAC 59.177 47.826 0.00 0.00 30.78 2.01
84 85 4.463070 GTTTACTTGGACCCCACTTAACA 58.537 43.478 0.00 0.00 30.78 2.41
85 86 2.951229 ACTTGGACCCCACTTAACAG 57.049 50.000 0.00 0.00 30.78 3.16
86 87 2.132686 ACTTGGACCCCACTTAACAGT 58.867 47.619 0.00 0.00 30.78 3.55
87 88 3.320129 ACTTGGACCCCACTTAACAGTA 58.680 45.455 0.00 0.00 30.78 2.74
88 89 3.072038 ACTTGGACCCCACTTAACAGTAC 59.928 47.826 0.00 0.00 30.78 2.73
89 90 1.619827 TGGACCCCACTTAACAGTACG 59.380 52.381 0.00 0.00 0.00 3.67
90 91 1.066645 GGACCCCACTTAACAGTACGG 60.067 57.143 0.00 0.00 0.00 4.02
91 92 1.620323 GACCCCACTTAACAGTACGGT 59.380 52.381 0.00 0.00 36.65 4.83
92 93 1.345415 ACCCCACTTAACAGTACGGTG 59.655 52.381 0.00 0.00 33.95 4.94
93 94 1.338389 CCCCACTTAACAGTACGGTGG 60.338 57.143 0.00 6.77 44.77 4.61
94 95 1.345415 CCCACTTAACAGTACGGTGGT 59.655 52.381 0.00 0.00 43.98 4.16
95 96 2.224354 CCCACTTAACAGTACGGTGGTT 60.224 50.000 0.00 0.29 43.98 3.67
96 97 3.062042 CCACTTAACAGTACGGTGGTTC 58.938 50.000 0.00 0.00 41.52 3.62
97 98 3.062042 CACTTAACAGTACGGTGGTTCC 58.938 50.000 0.00 0.00 0.00 3.62
98 99 2.967887 ACTTAACAGTACGGTGGTTCCT 59.032 45.455 0.00 0.00 0.00 3.36
99 100 4.022068 CACTTAACAGTACGGTGGTTCCTA 60.022 45.833 0.00 0.00 0.00 2.94
100 101 4.774200 ACTTAACAGTACGGTGGTTCCTAT 59.226 41.667 0.00 0.00 0.00 2.57
101 102 3.604875 AACAGTACGGTGGTTCCTATG 57.395 47.619 0.00 0.00 0.00 2.23
102 103 2.811410 ACAGTACGGTGGTTCCTATGA 58.189 47.619 0.00 0.00 0.00 2.15
103 104 2.494870 ACAGTACGGTGGTTCCTATGAC 59.505 50.000 0.00 0.00 0.00 3.06
104 105 2.758979 CAGTACGGTGGTTCCTATGACT 59.241 50.000 0.00 0.00 0.00 3.41
105 106 3.022406 AGTACGGTGGTTCCTATGACTC 58.978 50.000 0.00 0.00 0.00 3.36
106 107 1.933021 ACGGTGGTTCCTATGACTCA 58.067 50.000 0.00 0.00 0.00 3.41
107 108 2.253610 ACGGTGGTTCCTATGACTCAA 58.746 47.619 0.00 0.00 0.00 3.02
108 109 2.028385 ACGGTGGTTCCTATGACTCAAC 60.028 50.000 0.00 0.00 0.00 3.18
109 110 2.028476 CGGTGGTTCCTATGACTCAACA 60.028 50.000 0.00 0.00 0.00 3.33
110 111 3.556213 CGGTGGTTCCTATGACTCAACAA 60.556 47.826 0.00 0.00 0.00 2.83
111 112 4.394729 GGTGGTTCCTATGACTCAACAAA 58.605 43.478 0.00 0.00 0.00 2.83
112 113 4.455877 GGTGGTTCCTATGACTCAACAAAG 59.544 45.833 0.00 0.00 0.00 2.77
113 114 5.305585 GTGGTTCCTATGACTCAACAAAGA 58.694 41.667 0.00 0.00 0.00 2.52
114 115 5.763204 GTGGTTCCTATGACTCAACAAAGAA 59.237 40.000 0.00 0.00 0.00 2.52
115 116 5.997746 TGGTTCCTATGACTCAACAAAGAAG 59.002 40.000 0.00 0.00 0.00 2.85
116 117 6.183361 TGGTTCCTATGACTCAACAAAGAAGA 60.183 38.462 0.00 0.00 0.00 2.87
117 118 6.710744 GGTTCCTATGACTCAACAAAGAAGAA 59.289 38.462 0.00 0.00 0.00 2.52
118 119 7.228706 GGTTCCTATGACTCAACAAAGAAGAAA 59.771 37.037 0.00 0.00 0.00 2.52
119 120 8.621286 GTTCCTATGACTCAACAAAGAAGAAAA 58.379 33.333 0.00 0.00 0.00 2.29
120 121 8.154649 TCCTATGACTCAACAAAGAAGAAAAC 57.845 34.615 0.00 0.00 0.00 2.43
121 122 7.993183 TCCTATGACTCAACAAAGAAGAAAACT 59.007 33.333 0.00 0.00 0.00 2.66
122 123 9.273016 CCTATGACTCAACAAAGAAGAAAACTA 57.727 33.333 0.00 0.00 0.00 2.24
125 126 9.788960 ATGACTCAACAAAGAAGAAAACTAAAC 57.211 29.630 0.00 0.00 0.00 2.01
126 127 8.788806 TGACTCAACAAAGAAGAAAACTAAACA 58.211 29.630 0.00 0.00 0.00 2.83
127 128 9.620660 GACTCAACAAAGAAGAAAACTAAACAA 57.379 29.630 0.00 0.00 0.00 2.83
128 129 9.406828 ACTCAACAAAGAAGAAAACTAAACAAC 57.593 29.630 0.00 0.00 0.00 3.32
129 130 9.626045 CTCAACAAAGAAGAAAACTAAACAACT 57.374 29.630 0.00 0.00 0.00 3.16
138 139 9.634300 GAAGAAAACTAAACAACTAAGTCTTCG 57.366 33.333 0.00 0.00 27.94 3.79
139 140 8.713737 AGAAAACTAAACAACTAAGTCTTCGT 57.286 30.769 0.00 0.00 27.94 3.85
140 141 8.601476 AGAAAACTAAACAACTAAGTCTTCGTG 58.399 33.333 0.00 0.00 27.94 4.35
141 142 5.902051 ACTAAACAACTAAGTCTTCGTGC 57.098 39.130 0.00 0.00 0.00 5.34
142 143 5.598769 ACTAAACAACTAAGTCTTCGTGCT 58.401 37.500 0.00 0.00 0.00 4.40
143 144 5.690857 ACTAAACAACTAAGTCTTCGTGCTC 59.309 40.000 0.00 0.00 0.00 4.26
144 145 3.027974 ACAACTAAGTCTTCGTGCTCC 57.972 47.619 0.00 0.00 0.00 4.70
145 146 2.364324 ACAACTAAGTCTTCGTGCTCCA 59.636 45.455 0.00 0.00 0.00 3.86
146 147 3.006967 ACAACTAAGTCTTCGTGCTCCAT 59.993 43.478 0.00 0.00 0.00 3.41
147 148 4.219944 ACAACTAAGTCTTCGTGCTCCATA 59.780 41.667 0.00 0.00 0.00 2.74
148 149 4.640789 ACTAAGTCTTCGTGCTCCATAG 57.359 45.455 0.00 0.00 0.00 2.23
149 150 4.017808 ACTAAGTCTTCGTGCTCCATAGT 58.982 43.478 0.00 0.00 0.00 2.12
150 151 3.512033 AAGTCTTCGTGCTCCATAGTC 57.488 47.619 0.00 0.00 0.00 2.59
151 152 2.729194 AGTCTTCGTGCTCCATAGTCT 58.271 47.619 0.00 0.00 0.00 3.24
152 153 3.093057 AGTCTTCGTGCTCCATAGTCTT 58.907 45.455 0.00 0.00 0.00 3.01
153 154 3.129638 AGTCTTCGTGCTCCATAGTCTTC 59.870 47.826 0.00 0.00 0.00 2.87
154 155 3.089284 TCTTCGTGCTCCATAGTCTTCA 58.911 45.455 0.00 0.00 0.00 3.02
155 156 2.941453 TCGTGCTCCATAGTCTTCAC 57.059 50.000 0.00 0.00 0.00 3.18
156 157 2.167662 TCGTGCTCCATAGTCTTCACA 58.832 47.619 0.00 0.00 0.00 3.58
157 158 2.094700 TCGTGCTCCATAGTCTTCACAC 60.095 50.000 0.00 0.00 0.00 3.82
158 159 2.352715 CGTGCTCCATAGTCTTCACACA 60.353 50.000 0.00 0.00 0.00 3.72
159 160 3.664107 GTGCTCCATAGTCTTCACACAA 58.336 45.455 0.00 0.00 0.00 3.33
160 161 4.256920 GTGCTCCATAGTCTTCACACAAT 58.743 43.478 0.00 0.00 0.00 2.71
161 162 4.093998 GTGCTCCATAGTCTTCACACAATG 59.906 45.833 0.00 0.00 0.00 2.82
162 163 4.256920 GCTCCATAGTCTTCACACAATGT 58.743 43.478 0.00 0.00 0.00 2.71
163 164 4.331168 GCTCCATAGTCTTCACACAATGTC 59.669 45.833 0.00 0.00 0.00 3.06
164 165 5.728471 CTCCATAGTCTTCACACAATGTCT 58.272 41.667 0.00 0.00 0.00 3.41
165 166 6.114187 TCCATAGTCTTCACACAATGTCTT 57.886 37.500 0.00 0.00 0.00 3.01
166 167 6.166279 TCCATAGTCTTCACACAATGTCTTC 58.834 40.000 0.00 0.00 0.00 2.87
167 168 6.014242 TCCATAGTCTTCACACAATGTCTTCT 60.014 38.462 0.00 0.00 0.00 2.85
168 169 6.312426 CCATAGTCTTCACACAATGTCTTCTC 59.688 42.308 0.00 0.00 0.00 2.87
169 170 5.543507 AGTCTTCACACAATGTCTTCTCT 57.456 39.130 0.00 0.00 0.00 3.10
170 171 5.923204 AGTCTTCACACAATGTCTTCTCTT 58.077 37.500 0.00 0.00 0.00 2.85
171 172 5.757320 AGTCTTCACACAATGTCTTCTCTTG 59.243 40.000 0.00 0.00 0.00 3.02
172 173 5.525378 GTCTTCACACAATGTCTTCTCTTGT 59.475 40.000 0.00 0.00 33.55 3.16
173 174 5.755375 TCTTCACACAATGTCTTCTCTTGTC 59.245 40.000 0.00 0.00 30.99 3.18
174 175 5.282055 TCACACAATGTCTTCTCTTGTCT 57.718 39.130 0.00 0.00 30.99 3.41
175 176 5.674525 TCACACAATGTCTTCTCTTGTCTT 58.325 37.500 0.00 0.00 30.99 3.01
176 177 6.816136 TCACACAATGTCTTCTCTTGTCTTA 58.184 36.000 0.00 0.00 30.99 2.10
177 178 6.925718 TCACACAATGTCTTCTCTTGTCTTAG 59.074 38.462 0.00 0.00 30.99 2.18
178 179 6.925718 CACACAATGTCTTCTCTTGTCTTAGA 59.074 38.462 0.00 0.00 30.99 2.10
179 180 6.926272 ACACAATGTCTTCTCTTGTCTTAGAC 59.074 38.462 5.27 5.27 36.61 2.59
180 181 6.367422 CACAATGTCTTCTCTTGTCTTAGACC 59.633 42.308 10.10 0.00 35.51 3.85
181 182 6.268847 ACAATGTCTTCTCTTGTCTTAGACCT 59.731 38.462 10.10 0.00 35.51 3.85
182 183 6.926630 ATGTCTTCTCTTGTCTTAGACCTT 57.073 37.500 10.10 0.00 35.51 3.50
183 184 6.334102 TGTCTTCTCTTGTCTTAGACCTTC 57.666 41.667 10.10 0.00 35.51 3.46
184 185 5.833667 TGTCTTCTCTTGTCTTAGACCTTCA 59.166 40.000 10.10 0.00 35.51 3.02
185 186 6.153756 GTCTTCTCTTGTCTTAGACCTTCAC 58.846 44.000 10.10 0.00 31.33 3.18
186 187 5.833667 TCTTCTCTTGTCTTAGACCTTCACA 59.166 40.000 10.10 0.00 0.00 3.58
187 188 6.495181 TCTTCTCTTGTCTTAGACCTTCACAT 59.505 38.462 10.10 0.00 0.00 3.21
188 189 7.670140 TCTTCTCTTGTCTTAGACCTTCACATA 59.330 37.037 10.10 0.00 0.00 2.29
189 190 7.159322 TCTCTTGTCTTAGACCTTCACATAC 57.841 40.000 10.10 0.00 0.00 2.39
190 191 6.153000 TCTCTTGTCTTAGACCTTCACATACC 59.847 42.308 10.10 0.00 0.00 2.73
191 192 5.778241 TCTTGTCTTAGACCTTCACATACCA 59.222 40.000 10.10 0.00 0.00 3.25
192 193 5.401531 TGTCTTAGACCTTCACATACCAC 57.598 43.478 10.10 0.00 0.00 4.16
193 194 4.222145 TGTCTTAGACCTTCACATACCACC 59.778 45.833 10.10 0.00 0.00 4.61
194 195 4.466726 GTCTTAGACCTTCACATACCACCT 59.533 45.833 0.00 0.00 0.00 4.00
195 196 5.046520 GTCTTAGACCTTCACATACCACCTT 60.047 44.000 0.00 0.00 0.00 3.50
196 197 5.546499 TCTTAGACCTTCACATACCACCTTT 59.454 40.000 0.00 0.00 0.00 3.11
197 198 4.021102 AGACCTTCACATACCACCTTTG 57.979 45.455 0.00 0.00 0.00 2.77
198 199 3.394606 AGACCTTCACATACCACCTTTGT 59.605 43.478 0.00 0.00 0.00 2.83
199 200 3.751518 ACCTTCACATACCACCTTTGTC 58.248 45.455 0.00 0.00 0.00 3.18
200 201 3.394606 ACCTTCACATACCACCTTTGTCT 59.605 43.478 0.00 0.00 0.00 3.41
201 202 4.141251 ACCTTCACATACCACCTTTGTCTT 60.141 41.667 0.00 0.00 0.00 3.01
202 203 4.455877 CCTTCACATACCACCTTTGTCTTC 59.544 45.833 0.00 0.00 0.00 2.87
203 204 4.698201 TCACATACCACCTTTGTCTTCA 57.302 40.909 0.00 0.00 0.00 3.02
204 205 5.042463 TCACATACCACCTTTGTCTTCAA 57.958 39.130 0.00 0.00 0.00 2.69
205 206 5.630121 TCACATACCACCTTTGTCTTCAAT 58.370 37.500 0.00 0.00 33.32 2.57
206 207 5.473162 TCACATACCACCTTTGTCTTCAATG 59.527 40.000 0.00 0.00 33.32 2.82
207 208 5.241506 CACATACCACCTTTGTCTTCAATGT 59.758 40.000 0.00 0.00 33.32 2.71
208 209 5.473504 ACATACCACCTTTGTCTTCAATGTC 59.526 40.000 0.00 0.00 33.32 3.06
209 210 4.170468 ACCACCTTTGTCTTCAATGTCT 57.830 40.909 0.00 0.00 33.32 3.41
210 211 4.536765 ACCACCTTTGTCTTCAATGTCTT 58.463 39.130 0.00 0.00 33.32 3.01
211 212 4.580580 ACCACCTTTGTCTTCAATGTCTTC 59.419 41.667 0.00 0.00 33.32 2.87
212 213 4.580167 CCACCTTTGTCTTCAATGTCTTCA 59.420 41.667 0.00 0.00 33.32 3.02
213 214 5.242393 CCACCTTTGTCTTCAATGTCTTCAT 59.758 40.000 0.00 0.00 35.59 2.57
214 215 6.430925 CCACCTTTGTCTTCAATGTCTTCATA 59.569 38.462 0.00 0.00 33.49 2.15
215 216 7.301054 CACCTTTGTCTTCAATGTCTTCATAC 58.699 38.462 0.00 0.00 33.49 2.39
216 217 6.998074 ACCTTTGTCTTCAATGTCTTCATACA 59.002 34.615 0.00 0.00 33.49 2.29
217 218 7.667219 ACCTTTGTCTTCAATGTCTTCATACAT 59.333 33.333 0.00 0.00 41.87 2.29
219 220 9.903682 CTTTGTCTTCAATGTCTTCATACATTT 57.096 29.630 0.00 0.00 45.54 2.32
225 226 9.793252 CTTCAATGTCTTCATACATTTTAAGGG 57.207 33.333 0.00 0.00 45.54 3.95
226 227 8.292444 TCAATGTCTTCATACATTTTAAGGGG 57.708 34.615 0.00 0.00 45.54 4.79
227 228 7.893302 TCAATGTCTTCATACATTTTAAGGGGT 59.107 33.333 0.00 0.00 45.54 4.95
228 229 7.881775 ATGTCTTCATACATTTTAAGGGGTC 57.118 36.000 0.00 0.00 36.71 4.46
229 230 6.785076 TGTCTTCATACATTTTAAGGGGTCA 58.215 36.000 0.00 0.00 0.00 4.02
230 231 7.410174 TGTCTTCATACATTTTAAGGGGTCAT 58.590 34.615 0.00 0.00 0.00 3.06
231 232 7.556275 TGTCTTCATACATTTTAAGGGGTCATC 59.444 37.037 0.00 0.00 0.00 2.92
232 233 7.775561 GTCTTCATACATTTTAAGGGGTCATCT 59.224 37.037 0.00 0.00 0.00 2.90
233 234 7.993183 TCTTCATACATTTTAAGGGGTCATCTC 59.007 37.037 0.00 0.00 0.00 2.75
234 235 6.601332 TCATACATTTTAAGGGGTCATCTCC 58.399 40.000 0.00 0.00 0.00 3.71
235 236 3.886123 ACATTTTAAGGGGTCATCTCCG 58.114 45.455 0.00 0.00 0.00 4.63
236 237 3.214328 CATTTTAAGGGGTCATCTCCGG 58.786 50.000 0.00 0.00 0.00 5.14
237 238 1.961133 TTTAAGGGGTCATCTCCGGT 58.039 50.000 0.00 0.00 0.00 5.28
238 239 2.852714 TTAAGGGGTCATCTCCGGTA 57.147 50.000 0.00 0.00 0.00 4.02
239 240 2.376695 TAAGGGGTCATCTCCGGTAG 57.623 55.000 0.00 0.00 0.00 3.18
240 241 0.398664 AAGGGGTCATCTCCGGTAGG 60.399 60.000 0.00 0.00 39.46 3.18
241 242 1.075450 GGGGTCATCTCCGGTAGGT 60.075 63.158 0.00 0.00 39.05 3.08
242 243 0.186873 GGGGTCATCTCCGGTAGGTA 59.813 60.000 0.00 0.00 39.05 3.08
243 244 1.412074 GGGGTCATCTCCGGTAGGTAA 60.412 57.143 0.00 0.00 39.05 2.85
244 245 2.391678 GGGTCATCTCCGGTAGGTAAA 58.608 52.381 0.00 0.00 39.05 2.01
245 246 2.102084 GGGTCATCTCCGGTAGGTAAAC 59.898 54.545 0.00 0.00 39.05 2.01
246 247 3.029570 GGTCATCTCCGGTAGGTAAACT 58.970 50.000 0.00 0.00 39.05 2.66
247 248 3.181478 GGTCATCTCCGGTAGGTAAACTG 60.181 52.174 0.00 0.00 39.05 3.16
248 249 3.698040 GTCATCTCCGGTAGGTAAACTGA 59.302 47.826 0.00 0.00 39.05 3.41
249 250 4.159135 GTCATCTCCGGTAGGTAAACTGAA 59.841 45.833 0.00 0.00 39.05 3.02
250 251 4.960469 TCATCTCCGGTAGGTAAACTGAAT 59.040 41.667 0.00 0.00 39.05 2.57
251 252 4.996788 TCTCCGGTAGGTAAACTGAATC 57.003 45.455 0.00 0.00 39.05 2.52
252 253 4.346730 TCTCCGGTAGGTAAACTGAATCA 58.653 43.478 0.00 0.00 39.05 2.57
253 254 4.401519 TCTCCGGTAGGTAAACTGAATCAG 59.598 45.833 8.98 8.98 39.05 2.90
254 255 4.091549 TCCGGTAGGTAAACTGAATCAGT 58.908 43.478 10.56 10.56 41.87 3.41
255 256 4.081862 TCCGGTAGGTAAACTGAATCAGTG 60.082 45.833 17.46 0.72 40.36 3.66
256 257 4.081862 CCGGTAGGTAAACTGAATCAGTGA 60.082 45.833 17.46 5.41 44.62 3.41
257 258 5.103000 CGGTAGGTAAACTGAATCAGTGAG 58.897 45.833 17.46 0.00 44.62 3.51
258 259 5.420409 GGTAGGTAAACTGAATCAGTGAGG 58.580 45.833 17.46 0.00 44.62 3.86
259 260 4.559862 AGGTAAACTGAATCAGTGAGGG 57.440 45.455 17.46 0.00 44.62 4.30
260 261 4.168101 AGGTAAACTGAATCAGTGAGGGA 58.832 43.478 17.46 0.00 44.62 4.20
261 262 4.020128 AGGTAAACTGAATCAGTGAGGGAC 60.020 45.833 17.46 10.07 44.62 4.46
262 263 4.020128 GGTAAACTGAATCAGTGAGGGACT 60.020 45.833 17.46 0.00 44.62 3.85
263 264 5.187186 GGTAAACTGAATCAGTGAGGGACTA 59.813 44.000 17.46 0.00 44.62 2.59
264 265 4.810191 AACTGAATCAGTGAGGGACTAC 57.190 45.455 17.46 0.00 44.62 2.73
265 266 4.054359 ACTGAATCAGTGAGGGACTACT 57.946 45.455 15.96 0.00 43.63 2.57
266 267 5.194473 ACTGAATCAGTGAGGGACTACTA 57.806 43.478 15.96 0.00 43.63 1.82
267 268 4.951094 ACTGAATCAGTGAGGGACTACTAC 59.049 45.833 15.96 0.00 43.63 2.73
268 269 4.279145 TGAATCAGTGAGGGACTACTACC 58.721 47.826 0.00 0.00 41.55 3.18
269 270 4.017407 TGAATCAGTGAGGGACTACTACCT 60.017 45.833 0.00 0.00 41.55 3.08
270 271 3.367646 TCAGTGAGGGACTACTACCTG 57.632 52.381 0.00 0.00 41.55 4.00
271 272 2.648304 TCAGTGAGGGACTACTACCTGT 59.352 50.000 0.00 0.00 41.55 4.00
272 273 2.755655 CAGTGAGGGACTACTACCTGTG 59.244 54.545 0.00 0.00 41.55 3.66
273 274 2.379226 AGTGAGGGACTACTACCTGTGT 59.621 50.000 0.00 0.00 41.55 3.72
274 275 3.163467 GTGAGGGACTACTACCTGTGTT 58.837 50.000 0.00 0.00 41.55 3.32
275 276 4.043812 AGTGAGGGACTACTACCTGTGTTA 59.956 45.833 0.00 0.00 41.55 2.41
276 277 4.954826 GTGAGGGACTACTACCTGTGTTAT 59.045 45.833 0.00 0.00 41.55 1.89
277 278 5.067544 GTGAGGGACTACTACCTGTGTTATC 59.932 48.000 0.00 0.00 41.55 1.75
278 279 4.544683 AGGGACTACTACCTGTGTTATCC 58.455 47.826 0.00 0.00 36.02 2.59
279 280 4.232354 AGGGACTACTACCTGTGTTATCCT 59.768 45.833 0.00 0.00 36.02 3.24
280 281 4.341520 GGGACTACTACCTGTGTTATCCTG 59.658 50.000 0.00 0.00 0.00 3.86
281 282 4.202131 GGACTACTACCTGTGTTATCCTGC 60.202 50.000 0.00 0.00 0.00 4.85
282 283 4.350245 ACTACTACCTGTGTTATCCTGCA 58.650 43.478 0.00 0.00 0.00 4.41
283 284 4.775780 ACTACTACCTGTGTTATCCTGCAA 59.224 41.667 0.00 0.00 0.00 4.08
284 285 4.844349 ACTACCTGTGTTATCCTGCAAT 57.156 40.909 0.00 0.00 0.00 3.56
285 286 5.179452 ACTACCTGTGTTATCCTGCAATT 57.821 39.130 0.00 0.00 0.00 2.32
286 287 5.186198 ACTACCTGTGTTATCCTGCAATTC 58.814 41.667 0.00 0.00 0.00 2.17
287 288 4.307032 ACCTGTGTTATCCTGCAATTCT 57.693 40.909 0.00 0.00 0.00 2.40
288 289 4.265073 ACCTGTGTTATCCTGCAATTCTC 58.735 43.478 0.00 0.00 0.00 2.87
289 290 4.263462 ACCTGTGTTATCCTGCAATTCTCA 60.263 41.667 0.00 0.00 0.00 3.27
290 291 4.095483 CCTGTGTTATCCTGCAATTCTCAC 59.905 45.833 0.00 0.00 0.00 3.51
291 292 4.650734 TGTGTTATCCTGCAATTCTCACA 58.349 39.130 0.00 0.00 0.00 3.58
292 293 5.069318 TGTGTTATCCTGCAATTCTCACAA 58.931 37.500 7.48 0.00 31.85 3.33
293 294 5.534278 TGTGTTATCCTGCAATTCTCACAAA 59.466 36.000 7.48 0.00 31.85 2.83
294 295 5.858581 GTGTTATCCTGCAATTCTCACAAAC 59.141 40.000 0.00 0.00 0.00 2.93
295 296 5.534278 TGTTATCCTGCAATTCTCACAAACA 59.466 36.000 0.00 0.00 0.00 2.83
296 297 3.988379 TCCTGCAATTCTCACAAACAC 57.012 42.857 0.00 0.00 0.00 3.32
297 298 3.286353 TCCTGCAATTCTCACAAACACA 58.714 40.909 0.00 0.00 0.00 3.72
298 299 3.890756 TCCTGCAATTCTCACAAACACAT 59.109 39.130 0.00 0.00 0.00 3.21
299 300 4.341806 TCCTGCAATTCTCACAAACACATT 59.658 37.500 0.00 0.00 0.00 2.71
300 301 5.534278 TCCTGCAATTCTCACAAACACATTA 59.466 36.000 0.00 0.00 0.00 1.90
301 302 5.860182 CCTGCAATTCTCACAAACACATTAG 59.140 40.000 0.00 0.00 0.00 1.73
302 303 6.389830 TGCAATTCTCACAAACACATTAGT 57.610 33.333 0.00 0.00 0.00 2.24
303 304 6.437928 TGCAATTCTCACAAACACATTAGTC 58.562 36.000 0.00 0.00 0.00 2.59
304 305 5.858581 GCAATTCTCACAAACACATTAGTCC 59.141 40.000 0.00 0.00 0.00 3.85
305 306 6.381801 CAATTCTCACAAACACATTAGTCCC 58.618 40.000 0.00 0.00 0.00 4.46
306 307 4.974645 TCTCACAAACACATTAGTCCCT 57.025 40.909 0.00 0.00 0.00 4.20
307 308 4.894784 TCTCACAAACACATTAGTCCCTC 58.105 43.478 0.00 0.00 0.00 4.30
308 309 4.346709 TCTCACAAACACATTAGTCCCTCA 59.653 41.667 0.00 0.00 0.00 3.86
309 310 5.042463 TCACAAACACATTAGTCCCTCAA 57.958 39.130 0.00 0.00 0.00 3.02
310 311 4.819630 TCACAAACACATTAGTCCCTCAAC 59.180 41.667 0.00 0.00 0.00 3.18
311 312 4.821805 CACAAACACATTAGTCCCTCAACT 59.178 41.667 0.00 0.00 0.00 3.16
312 313 5.995282 CACAAACACATTAGTCCCTCAACTA 59.005 40.000 0.00 0.00 0.00 2.24
313 314 6.147821 CACAAACACATTAGTCCCTCAACTAG 59.852 42.308 0.00 0.00 33.46 2.57
314 315 5.422214 AACACATTAGTCCCTCAACTAGG 57.578 43.478 0.00 0.00 46.09 3.02
315 316 4.426704 ACACATTAGTCCCTCAACTAGGT 58.573 43.478 0.00 0.00 44.90 3.08
316 317 4.844655 ACACATTAGTCCCTCAACTAGGTT 59.155 41.667 0.00 0.00 44.90 3.50
317 318 5.309806 ACACATTAGTCCCTCAACTAGGTTT 59.690 40.000 0.00 0.00 44.90 3.27
318 319 5.643777 CACATTAGTCCCTCAACTAGGTTTG 59.356 44.000 0.00 0.00 44.90 2.93
319 320 5.309806 ACATTAGTCCCTCAACTAGGTTTGT 59.690 40.000 0.00 0.00 44.90 2.83
320 321 5.899631 TTAGTCCCTCAACTAGGTTTGTT 57.100 39.130 0.00 0.00 44.90 2.83
321 322 4.086706 AGTCCCTCAACTAGGTTTGTTG 57.913 45.455 0.00 0.00 44.90 3.33
322 323 3.458487 AGTCCCTCAACTAGGTTTGTTGT 59.542 43.478 6.52 0.00 44.90 3.32
323 324 3.813724 GTCCCTCAACTAGGTTTGTTGTC 59.186 47.826 6.52 0.00 44.90 3.18
324 325 3.456644 TCCCTCAACTAGGTTTGTTGTCA 59.543 43.478 6.52 0.00 44.90 3.58
325 326 4.080243 TCCCTCAACTAGGTTTGTTGTCAA 60.080 41.667 6.52 0.00 44.90 3.18
326 327 4.827284 CCCTCAACTAGGTTTGTTGTCAAT 59.173 41.667 6.52 0.00 44.90 2.57
327 328 6.001460 CCCTCAACTAGGTTTGTTGTCAATA 58.999 40.000 6.52 0.00 44.90 1.90
328 329 6.072673 CCCTCAACTAGGTTTGTTGTCAATAC 60.073 42.308 6.52 0.00 44.90 1.89
329 330 6.710744 CCTCAACTAGGTTTGTTGTCAATACT 59.289 38.462 6.52 0.00 43.54 2.12
330 331 7.095187 CCTCAACTAGGTTTGTTGTCAATACTC 60.095 40.741 6.52 0.00 43.54 2.59
331 332 6.708949 TCAACTAGGTTTGTTGTCAATACTCC 59.291 38.462 6.52 0.00 43.54 3.85
332 333 6.182507 ACTAGGTTTGTTGTCAATACTCCA 57.817 37.500 0.00 0.00 33.32 3.86
333 334 6.597562 ACTAGGTTTGTTGTCAATACTCCAA 58.402 36.000 0.00 0.00 33.32 3.53
334 335 7.057894 ACTAGGTTTGTTGTCAATACTCCAAA 58.942 34.615 0.00 0.00 33.32 3.28
335 336 6.783708 AGGTTTGTTGTCAATACTCCAAAA 57.216 33.333 1.19 0.00 31.96 2.44
336 337 6.569780 AGGTTTGTTGTCAATACTCCAAAAC 58.430 36.000 5.81 5.81 35.56 2.43
337 338 5.751509 GGTTTGTTGTCAATACTCCAAAACC 59.248 40.000 0.00 0.00 32.29 3.27
338 339 6.334202 GTTTGTTGTCAATACTCCAAAACCA 58.666 36.000 1.19 0.00 31.96 3.67
339 340 6.531503 TTGTTGTCAATACTCCAAAACCAA 57.468 33.333 0.00 0.00 0.00 3.67
340 341 6.723298 TGTTGTCAATACTCCAAAACCAAT 57.277 33.333 0.00 0.00 0.00 3.16
341 342 7.118496 TGTTGTCAATACTCCAAAACCAATT 57.882 32.000 0.00 0.00 0.00 2.32
342 343 8.239038 TGTTGTCAATACTCCAAAACCAATTA 57.761 30.769 0.00 0.00 0.00 1.40
343 344 8.356657 TGTTGTCAATACTCCAAAACCAATTAG 58.643 33.333 0.00 0.00 0.00 1.73
344 345 7.461182 TGTCAATACTCCAAAACCAATTAGG 57.539 36.000 0.00 0.00 45.67 2.69
345 346 6.435904 TGTCAATACTCCAAAACCAATTAGGG 59.564 38.462 0.00 0.00 43.89 3.53
346 347 5.955355 TCAATACTCCAAAACCAATTAGGGG 59.045 40.000 0.00 0.00 43.89 4.79
347 348 3.915346 ACTCCAAAACCAATTAGGGGT 57.085 42.857 0.00 0.00 43.89 4.95
348 349 3.506398 ACTCCAAAACCAATTAGGGGTG 58.494 45.455 0.00 0.00 43.89 4.61
349 350 2.831526 CTCCAAAACCAATTAGGGGTGG 59.168 50.000 0.00 0.00 43.89 4.61
350 351 1.277842 CCAAAACCAATTAGGGGTGGC 59.722 52.381 0.00 0.00 43.89 5.01
351 352 1.974236 CAAAACCAATTAGGGGTGGCA 59.026 47.619 0.00 0.00 43.89 4.92
352 353 1.639722 AAACCAATTAGGGGTGGCAC 58.360 50.000 9.70 9.70 43.89 5.01
353 354 0.783850 AACCAATTAGGGGTGGCACT 59.216 50.000 18.45 0.00 43.89 4.40
354 355 1.676248 ACCAATTAGGGGTGGCACTA 58.324 50.000 18.45 0.00 43.89 2.74
355 356 1.564348 ACCAATTAGGGGTGGCACTAG 59.436 52.381 18.45 0.00 43.89 2.57
356 357 1.843851 CCAATTAGGGGTGGCACTAGA 59.156 52.381 18.45 0.00 0.00 2.43
357 358 2.443255 CCAATTAGGGGTGGCACTAGAT 59.557 50.000 18.45 4.12 0.00 1.98
358 359 3.480470 CAATTAGGGGTGGCACTAGATG 58.520 50.000 18.45 4.48 0.00 2.90
415 416 5.568482 TGAACAAGAACAACATCTTTGACG 58.432 37.500 0.00 0.00 37.56 4.35
430 431 9.698309 ACATCTTTGACGTAGGATAATTATCTG 57.302 33.333 21.80 13.17 33.28 2.90
437 438 9.529325 TGACGTAGGATAATTATCTGTTGAAAG 57.471 33.333 21.80 10.08 33.28 2.62
467 468 6.340522 AGGAATGCATAATTTACAGTTTGCC 58.659 36.000 0.00 0.00 0.00 4.52
493 494 2.887152 AGTTTTGATCACCTGTTGCTCC 59.113 45.455 0.00 0.00 0.00 4.70
508 509 1.280133 TGCTCCTTGATCTGACCCAAG 59.720 52.381 12.20 12.20 39.43 3.61
523 524 5.004448 TGACCCAAGCAATACGTTTGATAA 58.996 37.500 12.62 0.00 38.01 1.75
541 542 9.113876 GTTTGATAATGAAGGTTTAAACGTGAG 57.886 33.333 13.87 0.00 0.00 3.51
619 620 6.246919 GGATACATGCTACTAGAAGGGAGTA 58.753 44.000 0.00 0.00 0.00 2.59
746 748 5.534207 TCCCGTGAACTTTACTCTTAACA 57.466 39.130 0.00 0.00 0.00 2.41
761 763 7.759489 ACTCTTAACAATTTATCTGCAACCA 57.241 32.000 0.00 0.00 0.00 3.67
825 827 1.118965 TCCTTCGCTCCAACACCTGA 61.119 55.000 0.00 0.00 0.00 3.86
864 939 2.256117 ACAAAACGAAGAGTCCCTGG 57.744 50.000 0.00 0.00 0.00 4.45
881 956 3.643978 GTGATGCGATCGGCCAGC 61.644 66.667 18.30 10.56 42.61 4.85
955 1030 3.053896 CCCCGTTGGTTCTTCGCC 61.054 66.667 0.00 0.00 0.00 5.54
956 1031 2.281208 CCCGTTGGTTCTTCGCCA 60.281 61.111 0.00 0.00 0.00 5.69
957 1032 2.325082 CCCGTTGGTTCTTCGCCAG 61.325 63.158 0.00 0.00 37.31 4.85
960 1035 1.566018 CGTTGGTTCTTCGCCAGACC 61.566 60.000 0.00 0.00 37.31 3.85
962 1037 3.119096 GGTTCTTCGCCAGACCGC 61.119 66.667 0.00 0.00 0.00 5.68
963 1038 2.357034 GTTCTTCGCCAGACCGCA 60.357 61.111 0.00 0.00 0.00 5.69
1121 1206 1.078708 CGTGCTCCCCGGTTGTTAT 60.079 57.895 0.00 0.00 0.00 1.89
1122 1207 0.675522 CGTGCTCCCCGGTTGTTATT 60.676 55.000 0.00 0.00 0.00 1.40
1185 1270 2.819595 CCGGTGATCAGCAACCCG 60.820 66.667 23.68 18.28 0.00 5.28
1242 1327 1.003355 AGTGATCAGCAACCCACCG 60.003 57.895 0.00 0.00 0.00 4.94
1243 1328 2.359850 TGATCAGCAACCCACCGC 60.360 61.111 0.00 0.00 0.00 5.68
1244 1329 3.134127 GATCAGCAACCCACCGCC 61.134 66.667 0.00 0.00 0.00 6.13
1245 1330 3.918253 GATCAGCAACCCACCGCCA 62.918 63.158 0.00 0.00 0.00 5.69
1248 1333 4.740822 AGCAACCCACCGCCATCC 62.741 66.667 0.00 0.00 0.00 3.51
1263 1348 3.943137 ATCCGTCCCTGCTTCCCCA 62.943 63.158 0.00 0.00 0.00 4.96
1350 1435 1.546323 CCAGTGATCAGCAACCCAACT 60.546 52.381 0.00 0.00 0.00 3.16
1464 1564 4.488790 CCATGCATGGGCTACCTC 57.511 61.111 34.31 0.00 44.31 3.85
1474 1574 1.375523 GGCTACCTCACCAACACCG 60.376 63.158 0.00 0.00 0.00 4.94
1587 1687 1.063006 CAACAAGATCATGCCCGCG 59.937 57.895 0.00 0.00 0.00 6.46
1614 1714 0.654160 ACTTCATGCGCATGATGTCG 59.346 50.000 42.79 33.73 46.63 4.35
1620 1720 2.969238 CGCATGATGTCGCTCCCC 60.969 66.667 0.00 0.00 0.00 4.81
1694 1794 4.039357 ATCGTAGCCGGCCGATCG 62.039 66.667 27.99 23.41 39.45 3.69
1710 1822 3.485216 CCGATCGTCAGTATTTTTGGCAC 60.485 47.826 15.09 0.00 0.00 5.01
1735 1859 5.369404 TGTTATTAGCATGATTGGAGGAGGA 59.631 40.000 0.00 0.00 0.00 3.71
1736 1860 6.044754 TGTTATTAGCATGATTGGAGGAGGAT 59.955 38.462 0.00 0.00 0.00 3.24
1742 1866 4.699257 GCATGATTGGAGGAGGATATTGAC 59.301 45.833 0.00 0.00 0.00 3.18
1768 1892 2.167487 TGTCTATGTTATGACAGCGGCA 59.833 45.455 1.45 0.00 39.58 5.69
1769 1893 3.181466 TGTCTATGTTATGACAGCGGCAT 60.181 43.478 1.45 2.54 39.58 4.40
1771 1895 2.627515 ATGTTATGACAGCGGCATCT 57.372 45.000 1.45 0.00 39.58 2.90
1840 1964 6.204882 CAAGTAACTACTGTTCCCTTTGGAAG 59.795 42.308 0.00 0.00 42.74 3.46
1917 2046 9.171701 GTATGATCTAGTCTGATACGTGTTTTC 57.828 37.037 0.00 0.00 0.00 2.29
1918 2047 6.561614 TGATCTAGTCTGATACGTGTTTTCC 58.438 40.000 0.00 0.00 0.00 3.13
1919 2048 5.320549 TCTAGTCTGATACGTGTTTTCCC 57.679 43.478 0.00 0.00 0.00 3.97
2009 2146 3.429547 GGATCCATCGATATGAAGTCCGG 60.430 52.174 6.95 0.00 34.84 5.14
2027 2164 2.989840 CCGGTCGAGATGATGAATTAGC 59.010 50.000 0.00 0.00 0.00 3.09
2039 2176 8.963725 AGATGATGAATTAGCTGTCAAAAATCA 58.036 29.630 0.00 0.00 0.00 2.57
2042 2179 8.358895 TGATGAATTAGCTGTCAAAAATCACAA 58.641 29.630 0.00 0.00 0.00 3.33
2044 2181 8.939201 TGAATTAGCTGTCAAAAATCACAAAA 57.061 26.923 0.00 0.00 0.00 2.44
2073 2210 8.927675 AGTAGTTTGAGTATAGTGAGGGATAG 57.072 38.462 0.00 0.00 0.00 2.08
2145 2283 7.594386 GGCGATTTAGATCTACAAAGTACCTAC 59.406 40.741 0.67 0.00 0.00 3.18
2146 2284 8.133627 GCGATTTAGATCTACAAAGTACCTACA 58.866 37.037 0.67 0.00 0.00 2.74
2185 2913 0.391130 TTCTTGATTCTGTCGGCCGG 60.391 55.000 27.83 9.82 0.00 6.13
2186 2914 1.815421 CTTGATTCTGTCGGCCGGG 60.815 63.158 27.83 15.95 0.00 5.73
2187 2915 3.323758 TTGATTCTGTCGGCCGGGG 62.324 63.158 27.83 15.57 0.00 5.73
2188 2916 4.547367 GATTCTGTCGGCCGGGGG 62.547 72.222 27.83 15.19 0.00 5.40
2218 2946 2.281484 GCGGAGTTTCCAGGTGCA 60.281 61.111 0.00 0.00 35.91 4.57
2220 2949 2.328099 CGGAGTTTCCAGGTGCAGC 61.328 63.158 8.11 8.11 35.91 5.25
2239 2968 2.434336 AGCTGCCGTATGGTGAATTCTA 59.566 45.455 7.05 0.00 37.67 2.10
2246 2980 6.017192 TGCCGTATGGTGAATTCTATGAAATG 60.017 38.462 7.05 0.00 37.67 2.32
2291 3025 8.610248 TGCAATGATTTGAGTTTGAAAATGAT 57.390 26.923 0.00 0.00 34.60 2.45
2292 3026 9.058174 TGCAATGATTTGAGTTTGAAAATGATT 57.942 25.926 0.00 0.00 32.19 2.57
2298 3032 4.545610 TGAGTTTGAAAATGATTCGCACC 58.454 39.130 0.00 0.00 0.00 5.01
2306 3040 5.417266 TGAAAATGATTCGCACCCAAGATAA 59.583 36.000 0.00 0.00 0.00 1.75
2313 3047 5.499139 TTCGCACCCAAGATAAAATGATC 57.501 39.130 0.00 0.00 0.00 2.92
2349 3083 2.262211 GAAAATCCGTTGCAATGCTCC 58.738 47.619 13.42 0.00 0.00 4.70
2366 3100 0.793861 TCCGTATGCGTTTCACTTGC 59.206 50.000 1.69 0.00 36.15 4.01
2367 3101 0.179200 CCGTATGCGTTTCACTTGCC 60.179 55.000 1.69 0.00 36.15 4.52
2368 3102 0.518355 CGTATGCGTTTCACTTGCCG 60.518 55.000 0.00 0.00 0.00 5.69
2386 3120 4.450976 TGCCGATATTAAGAGCATGTGTT 58.549 39.130 0.00 0.00 0.00 3.32
2394 3128 3.868757 AAGAGCATGTGTTACGCTAGA 57.131 42.857 0.00 0.00 35.75 2.43
2409 3143 2.558849 GCTAGACGTCTACGAATACGC 58.441 52.381 21.25 16.54 42.74 4.42
2410 3144 2.033407 GCTAGACGTCTACGAATACGCA 60.033 50.000 21.25 0.00 42.74 5.24
2433 3167 1.263356 CCCTCCCTCAACGTTAGTGA 58.737 55.000 0.00 0.00 0.00 3.41
2442 3176 9.326413 CTCCCTCAACGTTAGTGATTAATTAAT 57.674 33.333 10.51 10.51 0.00 1.40
2443 3177 9.675464 TCCCTCAACGTTAGTGATTAATTAATT 57.325 29.630 11.92 5.89 0.00 1.40
2471 3205 1.939934 CGATAGCCCGAAAAATCAGCA 59.060 47.619 0.00 0.00 0.00 4.41
2588 3322 6.705825 CCAATGGATGATATAACTGACGAACA 59.294 38.462 0.00 0.00 0.00 3.18
2593 3327 6.638873 GGATGATATAACTGACGAACACTCAG 59.361 42.308 0.00 0.00 40.97 3.35
2607 3341 6.127952 ACGAACACTCAGAAAGTCTATCCTAC 60.128 42.308 0.00 0.00 35.45 3.18
2671 3409 5.774690 AGGTGGCATTTTCTTATCAAAGACA 59.225 36.000 0.00 0.00 41.48 3.41
2684 3422 8.886719 TCTTATCAAAGACATGCACTTCATTAG 58.113 33.333 6.28 5.89 36.80 1.73
2698 3437 9.890629 TGCACTTCATTAGATTCTACTTAATGT 57.109 29.630 6.73 0.00 31.97 2.71
2713 3452 9.567776 TCTACTTAATGTGGATTTGTCTTTTGA 57.432 29.630 0.00 0.00 31.00 2.69
2724 3463 5.772825 TTTGTCTTTTGAGTGATCAAGGG 57.227 39.130 0.00 0.00 0.00 3.95
2726 3465 4.645535 TGTCTTTTGAGTGATCAAGGGAG 58.354 43.478 0.00 0.00 0.00 4.30
2739 3482 2.281484 GGGAGAGTTTGCGTGGCA 60.281 61.111 0.00 0.00 36.47 4.92
2758 3501 4.776837 TGGCATGAATGTGGGTAAAGAAAT 59.223 37.500 0.00 0.00 0.00 2.17
2767 3510 6.531503 TGTGGGTAAAGAAATTTGTTCACA 57.468 33.333 13.14 13.14 0.00 3.58
2787 3530 9.982651 GTTCACAGGCTGATAAAACTATATCTA 57.017 33.333 23.66 0.00 34.14 1.98
2788 3531 9.982651 TTCACAGGCTGATAAAACTATATCTAC 57.017 33.333 23.66 0.00 34.14 2.59
2794 3537 8.512956 GGCTGATAAAACTATATCTACGAGTCA 58.487 37.037 0.00 0.00 34.14 3.41
2849 3596 6.761099 TTTTATGCGGAAATTACCAAGCTA 57.239 33.333 0.00 0.00 0.00 3.32
2850 3597 6.761099 TTTATGCGGAAATTACCAAGCTAA 57.239 33.333 0.00 0.00 0.00 3.09
2851 3598 6.952773 TTATGCGGAAATTACCAAGCTAAT 57.047 33.333 0.00 0.00 0.00 1.73
2852 3599 8.453238 TTTATGCGGAAATTACCAAGCTAATA 57.547 30.769 0.00 0.00 0.00 0.98
2885 3633 4.479158 ACTAAATGAACCCCTGCAGAAAA 58.521 39.130 17.39 0.00 0.00 2.29
2892 3640 7.732222 ATGAACCCCTGCAGAAAATAATAAA 57.268 32.000 17.39 0.00 0.00 1.40
2893 3641 6.930731 TGAACCCCTGCAGAAAATAATAAAC 58.069 36.000 17.39 0.00 0.00 2.01
2916 3675 2.697431 TTGATGAAAACGGCGAAAGG 57.303 45.000 16.62 0.00 0.00 3.11
2922 3681 2.114056 GAAAACGGCGAAAGGAAACAC 58.886 47.619 16.62 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.386867 AAATCCTATGTCTTCGAGCGAA 57.613 40.909 5.14 5.14 0.00 4.70
10 11 4.112634 CAAAATCCTATGTCTTCGAGCGA 58.887 43.478 0.00 0.00 0.00 4.93
11 12 3.246226 CCAAAATCCTATGTCTTCGAGCG 59.754 47.826 0.00 0.00 0.00 5.03
12 13 4.192317 ACCAAAATCCTATGTCTTCGAGC 58.808 43.478 0.00 0.00 0.00 5.03
13 14 7.466050 GCTTAACCAAAATCCTATGTCTTCGAG 60.466 40.741 0.00 0.00 0.00 4.04
14 15 6.315393 GCTTAACCAAAATCCTATGTCTTCGA 59.685 38.462 0.00 0.00 0.00 3.71
15 16 6.093495 TGCTTAACCAAAATCCTATGTCTTCG 59.907 38.462 0.00 0.00 0.00 3.79
16 17 7.391148 TGCTTAACCAAAATCCTATGTCTTC 57.609 36.000 0.00 0.00 0.00 2.87
17 18 7.615365 TGATGCTTAACCAAAATCCTATGTCTT 59.385 33.333 0.00 0.00 0.00 3.01
18 19 7.067494 GTGATGCTTAACCAAAATCCTATGTCT 59.933 37.037 0.00 0.00 0.00 3.41
19 20 7.067494 AGTGATGCTTAACCAAAATCCTATGTC 59.933 37.037 0.00 0.00 0.00 3.06
20 21 6.891908 AGTGATGCTTAACCAAAATCCTATGT 59.108 34.615 0.00 0.00 0.00 2.29
21 22 7.338800 AGTGATGCTTAACCAAAATCCTATG 57.661 36.000 0.00 0.00 0.00 2.23
22 23 7.615365 TGAAGTGATGCTTAACCAAAATCCTAT 59.385 33.333 0.00 0.00 37.59 2.57
23 24 6.945435 TGAAGTGATGCTTAACCAAAATCCTA 59.055 34.615 0.00 0.00 37.59 2.94
24 25 5.774690 TGAAGTGATGCTTAACCAAAATCCT 59.225 36.000 0.00 0.00 37.59 3.24
25 26 6.024552 TGAAGTGATGCTTAACCAAAATCC 57.975 37.500 0.00 0.00 37.59 3.01
26 27 6.681777 ACTGAAGTGATGCTTAACCAAAATC 58.318 36.000 0.00 0.00 37.59 2.17
27 28 6.265196 TGACTGAAGTGATGCTTAACCAAAAT 59.735 34.615 0.00 0.00 37.59 1.82
28 29 5.592282 TGACTGAAGTGATGCTTAACCAAAA 59.408 36.000 0.00 0.00 37.59 2.44
29 30 5.129634 TGACTGAAGTGATGCTTAACCAAA 58.870 37.500 0.00 0.00 37.59 3.28
30 31 4.713553 TGACTGAAGTGATGCTTAACCAA 58.286 39.130 0.00 0.00 37.59 3.67
31 32 4.350368 TGACTGAAGTGATGCTTAACCA 57.650 40.909 0.00 0.00 37.59 3.67
32 33 5.645497 AGAATGACTGAAGTGATGCTTAACC 59.355 40.000 0.00 0.00 37.59 2.85
33 34 6.734104 AGAATGACTGAAGTGATGCTTAAC 57.266 37.500 0.00 0.00 37.59 2.01
50 51 5.744887 GGTCCAAGTAAACCAGTCAGAATGA 60.745 44.000 0.00 0.00 37.99 2.57
51 52 4.455877 GGTCCAAGTAAACCAGTCAGAATG 59.544 45.833 0.00 0.00 35.53 2.67
52 53 4.506802 GGGTCCAAGTAAACCAGTCAGAAT 60.507 45.833 0.00 0.00 37.28 2.40
53 54 3.181448 GGGTCCAAGTAAACCAGTCAGAA 60.181 47.826 0.00 0.00 37.28 3.02
54 55 2.370849 GGGTCCAAGTAAACCAGTCAGA 59.629 50.000 0.00 0.00 37.28 3.27
55 56 2.552373 GGGGTCCAAGTAAACCAGTCAG 60.552 54.545 0.00 0.00 37.28 3.51
56 57 1.422402 GGGGTCCAAGTAAACCAGTCA 59.578 52.381 0.00 0.00 37.28 3.41
57 58 1.422402 TGGGGTCCAAGTAAACCAGTC 59.578 52.381 0.00 0.00 37.28 3.51
58 59 1.144298 GTGGGGTCCAAGTAAACCAGT 59.856 52.381 0.00 0.00 37.28 4.00
59 60 1.423921 AGTGGGGTCCAAGTAAACCAG 59.576 52.381 0.00 0.00 37.28 4.00
60 61 1.525175 AGTGGGGTCCAAGTAAACCA 58.475 50.000 0.00 0.00 37.28 3.67
61 62 2.670019 AAGTGGGGTCCAAGTAAACC 57.330 50.000 0.00 0.00 34.18 3.27
62 63 4.463070 TGTTAAGTGGGGTCCAAGTAAAC 58.537 43.478 0.00 0.00 34.18 2.01
63 64 4.166531 ACTGTTAAGTGGGGTCCAAGTAAA 59.833 41.667 0.00 0.00 34.18 2.01
64 65 3.717913 ACTGTTAAGTGGGGTCCAAGTAA 59.282 43.478 0.00 0.00 34.18 2.24
65 66 3.320129 ACTGTTAAGTGGGGTCCAAGTA 58.680 45.455 0.00 0.00 34.18 2.24
66 67 2.132686 ACTGTTAAGTGGGGTCCAAGT 58.867 47.619 0.00 0.00 34.18 3.16
67 68 2.951229 ACTGTTAAGTGGGGTCCAAG 57.049 50.000 0.00 0.00 34.18 3.61
68 69 2.037511 CGTACTGTTAAGTGGGGTCCAA 59.962 50.000 0.00 0.00 37.19 3.53
69 70 1.619827 CGTACTGTTAAGTGGGGTCCA 59.380 52.381 0.00 0.00 37.19 4.02
70 71 1.066645 CCGTACTGTTAAGTGGGGTCC 60.067 57.143 0.00 0.00 37.19 4.46
71 72 1.620323 ACCGTACTGTTAAGTGGGGTC 59.380 52.381 0.00 0.00 38.30 4.46
72 73 1.345415 CACCGTACTGTTAAGTGGGGT 59.655 52.381 0.00 0.00 41.41 4.95
73 74 1.338389 CCACCGTACTGTTAAGTGGGG 60.338 57.143 12.44 0.00 43.47 4.96
74 75 2.088950 CCACCGTACTGTTAAGTGGG 57.911 55.000 12.44 0.00 43.47 4.61
76 77 3.062042 GGAACCACCGTACTGTTAAGTG 58.938 50.000 0.00 0.00 37.19 3.16
77 78 2.967887 AGGAACCACCGTACTGTTAAGT 59.032 45.455 0.00 0.00 44.74 2.24
78 79 3.672767 AGGAACCACCGTACTGTTAAG 57.327 47.619 0.00 0.00 44.74 1.85
79 80 4.771577 TCATAGGAACCACCGTACTGTTAA 59.228 41.667 0.00 0.00 44.74 2.01
80 81 4.158394 GTCATAGGAACCACCGTACTGTTA 59.842 45.833 0.00 0.00 44.74 2.41
81 82 3.056322 GTCATAGGAACCACCGTACTGTT 60.056 47.826 0.00 0.00 44.74 3.16
82 83 2.494870 GTCATAGGAACCACCGTACTGT 59.505 50.000 0.00 0.00 44.74 3.55
83 84 2.758979 AGTCATAGGAACCACCGTACTG 59.241 50.000 0.00 0.00 44.74 2.74
84 85 3.022406 GAGTCATAGGAACCACCGTACT 58.978 50.000 0.00 0.00 44.74 2.73
85 86 2.756760 TGAGTCATAGGAACCACCGTAC 59.243 50.000 0.00 0.00 44.74 3.67
86 87 3.090210 TGAGTCATAGGAACCACCGTA 57.910 47.619 0.00 0.00 44.74 4.02
87 88 1.933021 TGAGTCATAGGAACCACCGT 58.067 50.000 0.00 0.00 44.74 4.83
88 89 2.028476 TGTTGAGTCATAGGAACCACCG 60.028 50.000 0.00 0.00 44.74 4.94
89 90 3.695830 TGTTGAGTCATAGGAACCACC 57.304 47.619 0.00 0.00 39.35 4.61
90 91 5.305585 TCTTTGTTGAGTCATAGGAACCAC 58.694 41.667 0.00 0.00 0.00 4.16
91 92 5.560722 TCTTTGTTGAGTCATAGGAACCA 57.439 39.130 0.00 0.00 0.00 3.67
92 93 6.231211 TCTTCTTTGTTGAGTCATAGGAACC 58.769 40.000 0.00 0.00 0.00 3.62
93 94 7.730364 TTCTTCTTTGTTGAGTCATAGGAAC 57.270 36.000 0.00 0.00 0.00 3.62
94 95 8.621286 GTTTTCTTCTTTGTTGAGTCATAGGAA 58.379 33.333 0.00 0.00 0.00 3.36
95 96 7.993183 AGTTTTCTTCTTTGTTGAGTCATAGGA 59.007 33.333 0.00 0.00 0.00 2.94
96 97 8.159344 AGTTTTCTTCTTTGTTGAGTCATAGG 57.841 34.615 0.00 0.00 0.00 2.57
99 100 9.788960 GTTTAGTTTTCTTCTTTGTTGAGTCAT 57.211 29.630 0.00 0.00 0.00 3.06
100 101 8.788806 TGTTTAGTTTTCTTCTTTGTTGAGTCA 58.211 29.630 0.00 0.00 0.00 3.41
101 102 9.620660 TTGTTTAGTTTTCTTCTTTGTTGAGTC 57.379 29.630 0.00 0.00 0.00 3.36
102 103 9.406828 GTTGTTTAGTTTTCTTCTTTGTTGAGT 57.593 29.630 0.00 0.00 0.00 3.41
103 104 9.626045 AGTTGTTTAGTTTTCTTCTTTGTTGAG 57.374 29.630 0.00 0.00 0.00 3.02
112 113 9.634300 CGAAGACTTAGTTGTTTAGTTTTCTTC 57.366 33.333 0.00 0.00 33.35 2.87
113 114 9.159364 ACGAAGACTTAGTTGTTTAGTTTTCTT 57.841 29.630 0.00 0.00 33.35 2.52
114 115 8.601476 CACGAAGACTTAGTTGTTTAGTTTTCT 58.399 33.333 0.00 0.00 33.35 2.52
115 116 7.372657 GCACGAAGACTTAGTTGTTTAGTTTTC 59.627 37.037 0.00 0.00 32.62 2.29
116 117 7.065443 AGCACGAAGACTTAGTTGTTTAGTTTT 59.935 33.333 0.00 0.00 0.00 2.43
117 118 6.537660 AGCACGAAGACTTAGTTGTTTAGTTT 59.462 34.615 0.00 0.00 0.00 2.66
118 119 6.047231 AGCACGAAGACTTAGTTGTTTAGTT 58.953 36.000 0.00 0.00 0.00 2.24
119 120 5.598769 AGCACGAAGACTTAGTTGTTTAGT 58.401 37.500 0.00 0.00 0.00 2.24
120 121 5.118817 GGAGCACGAAGACTTAGTTGTTTAG 59.881 44.000 0.00 0.00 0.00 1.85
121 122 4.986659 GGAGCACGAAGACTTAGTTGTTTA 59.013 41.667 0.00 0.00 0.00 2.01
122 123 3.808174 GGAGCACGAAGACTTAGTTGTTT 59.192 43.478 0.00 0.00 0.00 2.83
123 124 3.181469 TGGAGCACGAAGACTTAGTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
124 125 2.364324 TGGAGCACGAAGACTTAGTTGT 59.636 45.455 0.00 0.00 0.00 3.32
125 126 3.026630 TGGAGCACGAAGACTTAGTTG 57.973 47.619 0.00 0.00 0.00 3.16
126 127 3.963428 ATGGAGCACGAAGACTTAGTT 57.037 42.857 0.00 0.00 0.00 2.24
127 128 4.017808 ACTATGGAGCACGAAGACTTAGT 58.982 43.478 0.00 0.00 0.00 2.24
128 129 4.336993 AGACTATGGAGCACGAAGACTTAG 59.663 45.833 0.00 0.00 0.00 2.18
129 130 4.270834 AGACTATGGAGCACGAAGACTTA 58.729 43.478 0.00 0.00 0.00 2.24
130 131 3.093057 AGACTATGGAGCACGAAGACTT 58.907 45.455 0.00 0.00 0.00 3.01
131 132 2.729194 AGACTATGGAGCACGAAGACT 58.271 47.619 0.00 0.00 0.00 3.24
132 133 3.119459 TGAAGACTATGGAGCACGAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
133 134 3.089284 TGAAGACTATGGAGCACGAAGA 58.911 45.455 0.00 0.00 0.00 2.87
134 135 3.182967 GTGAAGACTATGGAGCACGAAG 58.817 50.000 0.00 0.00 0.00 3.79
135 136 2.560981 TGTGAAGACTATGGAGCACGAA 59.439 45.455 0.00 0.00 0.00 3.85
136 137 2.094700 GTGTGAAGACTATGGAGCACGA 60.095 50.000 0.00 0.00 0.00 4.35
137 138 2.263077 GTGTGAAGACTATGGAGCACG 58.737 52.381 0.00 0.00 0.00 5.34
138 139 3.319137 TGTGTGAAGACTATGGAGCAC 57.681 47.619 0.00 0.00 0.00 4.40
139 140 4.256110 CATTGTGTGAAGACTATGGAGCA 58.744 43.478 0.00 0.00 0.00 4.26
140 141 4.256920 ACATTGTGTGAAGACTATGGAGC 58.743 43.478 6.89 0.00 34.54 4.70
141 142 5.728471 AGACATTGTGTGAAGACTATGGAG 58.272 41.667 0.00 0.00 34.54 3.86
142 143 5.745312 AGACATTGTGTGAAGACTATGGA 57.255 39.130 0.00 0.00 34.54 3.41
143 144 6.169094 AGAAGACATTGTGTGAAGACTATGG 58.831 40.000 0.00 0.00 34.54 2.74
144 145 7.095910 AGAGAAGACATTGTGTGAAGACTATG 58.904 38.462 0.00 1.51 35.82 2.23
145 146 7.238486 AGAGAAGACATTGTGTGAAGACTAT 57.762 36.000 0.00 0.00 0.00 2.12
146 147 6.656632 AGAGAAGACATTGTGTGAAGACTA 57.343 37.500 0.00 0.00 0.00 2.59
147 148 5.543507 AGAGAAGACATTGTGTGAAGACT 57.456 39.130 0.00 0.00 0.00 3.24
148 149 5.525378 ACAAGAGAAGACATTGTGTGAAGAC 59.475 40.000 0.00 0.00 35.89 3.01
149 150 5.674525 ACAAGAGAAGACATTGTGTGAAGA 58.325 37.500 0.00 0.00 35.89 2.87
150 151 5.757320 AGACAAGAGAAGACATTGTGTGAAG 59.243 40.000 0.00 0.00 37.29 3.02
151 152 5.674525 AGACAAGAGAAGACATTGTGTGAA 58.325 37.500 0.00 0.00 37.29 3.18
152 153 5.282055 AGACAAGAGAAGACATTGTGTGA 57.718 39.130 0.00 0.00 37.29 3.58
153 154 5.998454 AAGACAAGAGAAGACATTGTGTG 57.002 39.130 0.00 0.00 37.29 3.82
154 155 6.926272 GTCTAAGACAAGAGAAGACATTGTGT 59.074 38.462 0.00 0.00 37.29 3.72
155 156 6.367422 GGTCTAAGACAAGAGAAGACATTGTG 59.633 42.308 0.00 0.00 38.63 3.33
156 157 6.268847 AGGTCTAAGACAAGAGAAGACATTGT 59.731 38.462 0.00 0.00 38.63 2.71
157 158 6.696411 AGGTCTAAGACAAGAGAAGACATTG 58.304 40.000 0.00 0.00 38.63 2.82
158 159 6.926630 AGGTCTAAGACAAGAGAAGACATT 57.073 37.500 0.00 0.00 38.63 2.71
159 160 6.495181 TGAAGGTCTAAGACAAGAGAAGACAT 59.505 38.462 0.00 0.00 38.63 3.06
160 161 5.833667 TGAAGGTCTAAGACAAGAGAAGACA 59.166 40.000 0.00 0.00 38.63 3.41
161 162 6.153756 GTGAAGGTCTAAGACAAGAGAAGAC 58.846 44.000 0.00 0.00 36.64 3.01
162 163 5.833667 TGTGAAGGTCTAAGACAAGAGAAGA 59.166 40.000 0.00 0.00 33.68 2.87
163 164 6.090483 TGTGAAGGTCTAAGACAAGAGAAG 57.910 41.667 0.00 0.00 33.68 2.85
164 165 6.672266 ATGTGAAGGTCTAAGACAAGAGAA 57.328 37.500 0.00 0.00 33.68 2.87
165 166 6.153000 GGTATGTGAAGGTCTAAGACAAGAGA 59.847 42.308 0.00 0.00 33.68 3.10
166 167 6.071334 TGGTATGTGAAGGTCTAAGACAAGAG 60.071 42.308 0.00 0.00 33.68 2.85
167 168 5.778241 TGGTATGTGAAGGTCTAAGACAAGA 59.222 40.000 0.00 0.00 33.68 3.02
168 169 5.869888 GTGGTATGTGAAGGTCTAAGACAAG 59.130 44.000 0.00 0.00 33.68 3.16
169 170 5.279809 GGTGGTATGTGAAGGTCTAAGACAA 60.280 44.000 0.00 0.00 33.68 3.18
170 171 4.222145 GGTGGTATGTGAAGGTCTAAGACA 59.778 45.833 0.00 0.00 33.68 3.41
171 172 4.466726 AGGTGGTATGTGAAGGTCTAAGAC 59.533 45.833 0.00 0.00 0.00 3.01
172 173 4.684724 AGGTGGTATGTGAAGGTCTAAGA 58.315 43.478 0.00 0.00 0.00 2.10
173 174 5.422214 AAGGTGGTATGTGAAGGTCTAAG 57.578 43.478 0.00 0.00 0.00 2.18
174 175 5.072600 ACAAAGGTGGTATGTGAAGGTCTAA 59.927 40.000 0.00 0.00 0.00 2.10
175 176 4.595781 ACAAAGGTGGTATGTGAAGGTCTA 59.404 41.667 0.00 0.00 0.00 2.59
176 177 3.394606 ACAAAGGTGGTATGTGAAGGTCT 59.605 43.478 0.00 0.00 0.00 3.85
177 178 3.751518 ACAAAGGTGGTATGTGAAGGTC 58.248 45.455 0.00 0.00 0.00 3.85
178 179 3.394606 AGACAAAGGTGGTATGTGAAGGT 59.605 43.478 0.00 0.00 0.00 3.50
179 180 4.021102 AGACAAAGGTGGTATGTGAAGG 57.979 45.455 0.00 0.00 0.00 3.46
180 181 5.063204 TGAAGACAAAGGTGGTATGTGAAG 58.937 41.667 0.00 0.00 0.00 3.02
181 182 5.042463 TGAAGACAAAGGTGGTATGTGAA 57.958 39.130 0.00 0.00 0.00 3.18
182 183 4.698201 TGAAGACAAAGGTGGTATGTGA 57.302 40.909 0.00 0.00 0.00 3.58
183 184 5.241506 ACATTGAAGACAAAGGTGGTATGTG 59.758 40.000 0.00 0.00 39.54 3.21
184 185 5.385198 ACATTGAAGACAAAGGTGGTATGT 58.615 37.500 0.00 0.00 39.54 2.29
185 186 5.707298 AGACATTGAAGACAAAGGTGGTATG 59.293 40.000 0.00 0.00 39.54 2.39
186 187 5.880901 AGACATTGAAGACAAAGGTGGTAT 58.119 37.500 0.00 0.00 39.54 2.73
187 188 5.304686 AGACATTGAAGACAAAGGTGGTA 57.695 39.130 0.00 0.00 39.54 3.25
188 189 4.170468 AGACATTGAAGACAAAGGTGGT 57.830 40.909 0.00 0.00 39.54 4.16
189 190 4.580167 TGAAGACATTGAAGACAAAGGTGG 59.420 41.667 0.00 0.00 39.54 4.61
190 191 5.756195 TGAAGACATTGAAGACAAAGGTG 57.244 39.130 0.00 0.00 39.54 4.00
191 192 6.998074 TGTATGAAGACATTGAAGACAAAGGT 59.002 34.615 0.00 0.00 39.54 3.50
192 193 7.439157 TGTATGAAGACATTGAAGACAAAGG 57.561 36.000 0.00 0.00 39.54 3.11
193 194 9.903682 AAATGTATGAAGACATTGAAGACAAAG 57.096 29.630 4.20 0.00 46.84 2.77
199 200 9.793252 CCCTTAAAATGTATGAAGACATTGAAG 57.207 33.333 4.20 10.04 46.84 3.02
200 201 8.748412 CCCCTTAAAATGTATGAAGACATTGAA 58.252 33.333 4.20 2.33 46.84 2.69
201 202 7.893302 ACCCCTTAAAATGTATGAAGACATTGA 59.107 33.333 4.20 0.00 46.84 2.57
202 203 8.066612 ACCCCTTAAAATGTATGAAGACATTG 57.933 34.615 4.20 0.00 46.84 2.82
204 205 7.410174 TGACCCCTTAAAATGTATGAAGACAT 58.590 34.615 0.00 0.00 41.92 3.06
205 206 6.785076 TGACCCCTTAAAATGTATGAAGACA 58.215 36.000 0.00 0.00 0.00 3.41
206 207 7.775561 AGATGACCCCTTAAAATGTATGAAGAC 59.224 37.037 0.00 0.00 0.00 3.01
207 208 7.872138 AGATGACCCCTTAAAATGTATGAAGA 58.128 34.615 0.00 0.00 0.00 2.87
208 209 7.229506 GGAGATGACCCCTTAAAATGTATGAAG 59.770 40.741 0.00 0.00 0.00 3.02
209 210 7.060421 GGAGATGACCCCTTAAAATGTATGAA 58.940 38.462 0.00 0.00 0.00 2.57
210 211 6.601332 GGAGATGACCCCTTAAAATGTATGA 58.399 40.000 0.00 0.00 0.00 2.15
211 212 5.470098 CGGAGATGACCCCTTAAAATGTATG 59.530 44.000 0.00 0.00 0.00 2.39
212 213 5.456186 CCGGAGATGACCCCTTAAAATGTAT 60.456 44.000 0.00 0.00 0.00 2.29
213 214 4.141574 CCGGAGATGACCCCTTAAAATGTA 60.142 45.833 0.00 0.00 0.00 2.29
214 215 3.371595 CCGGAGATGACCCCTTAAAATGT 60.372 47.826 0.00 0.00 0.00 2.71
215 216 3.214328 CCGGAGATGACCCCTTAAAATG 58.786 50.000 0.00 0.00 0.00 2.32
216 217 2.850568 ACCGGAGATGACCCCTTAAAAT 59.149 45.455 9.46 0.00 0.00 1.82
217 218 2.271777 ACCGGAGATGACCCCTTAAAA 58.728 47.619 9.46 0.00 0.00 1.52
218 219 1.961133 ACCGGAGATGACCCCTTAAA 58.039 50.000 9.46 0.00 0.00 1.52
219 220 2.674420 CTACCGGAGATGACCCCTTAA 58.326 52.381 9.46 0.00 0.00 1.85
220 221 1.133262 CCTACCGGAGATGACCCCTTA 60.133 57.143 9.46 0.00 0.00 2.69
221 222 0.398664 CCTACCGGAGATGACCCCTT 60.399 60.000 9.46 0.00 0.00 3.95
222 223 1.233369 CCTACCGGAGATGACCCCT 59.767 63.158 9.46 0.00 0.00 4.79
223 224 0.186873 TACCTACCGGAGATGACCCC 59.813 60.000 9.46 0.00 0.00 4.95
224 225 2.077687 TTACCTACCGGAGATGACCC 57.922 55.000 9.46 0.00 0.00 4.46
225 226 3.029570 AGTTTACCTACCGGAGATGACC 58.970 50.000 9.46 0.00 0.00 4.02
226 227 3.698040 TCAGTTTACCTACCGGAGATGAC 59.302 47.826 9.46 0.00 0.00 3.06
227 228 3.972133 TCAGTTTACCTACCGGAGATGA 58.028 45.455 9.46 0.00 0.00 2.92
228 229 4.730949 TTCAGTTTACCTACCGGAGATG 57.269 45.455 9.46 0.00 0.00 2.90
229 230 4.960469 TGATTCAGTTTACCTACCGGAGAT 59.040 41.667 9.46 0.00 0.00 2.75
230 231 4.346730 TGATTCAGTTTACCTACCGGAGA 58.653 43.478 9.46 0.00 0.00 3.71
231 232 4.159879 ACTGATTCAGTTTACCTACCGGAG 59.840 45.833 13.61 0.28 42.59 4.63
232 233 4.081862 CACTGATTCAGTTTACCTACCGGA 60.082 45.833 16.64 0.00 42.59 5.14
233 234 4.081862 TCACTGATTCAGTTTACCTACCGG 60.082 45.833 16.64 0.00 42.59 5.28
234 235 5.068234 TCACTGATTCAGTTTACCTACCG 57.932 43.478 16.64 2.96 42.59 4.02
235 236 5.420409 CCTCACTGATTCAGTTTACCTACC 58.580 45.833 16.64 0.00 42.59 3.18
236 237 5.187186 TCCCTCACTGATTCAGTTTACCTAC 59.813 44.000 16.64 0.00 42.59 3.18
237 238 5.187186 GTCCCTCACTGATTCAGTTTACCTA 59.813 44.000 16.64 0.00 42.59 3.08
238 239 4.020128 GTCCCTCACTGATTCAGTTTACCT 60.020 45.833 16.64 0.00 42.59 3.08
239 240 4.020128 AGTCCCTCACTGATTCAGTTTACC 60.020 45.833 16.64 3.72 42.59 2.85
240 241 5.153950 AGTCCCTCACTGATTCAGTTTAC 57.846 43.478 16.64 10.16 42.59 2.01
241 242 6.017192 AGTAGTCCCTCACTGATTCAGTTTA 58.983 40.000 16.64 7.41 42.59 2.01
242 243 4.841246 AGTAGTCCCTCACTGATTCAGTTT 59.159 41.667 16.64 0.00 42.59 2.66
243 244 4.421131 AGTAGTCCCTCACTGATTCAGTT 58.579 43.478 16.64 3.57 42.59 3.16
244 245 4.054359 AGTAGTCCCTCACTGATTCAGT 57.946 45.455 13.61 13.61 46.51 3.41
245 246 4.339814 GGTAGTAGTCCCTCACTGATTCAG 59.660 50.000 12.17 12.17 36.43 3.02
246 247 4.017407 AGGTAGTAGTCCCTCACTGATTCA 60.017 45.833 0.00 0.00 36.43 2.57
247 248 4.339814 CAGGTAGTAGTCCCTCACTGATTC 59.660 50.000 0.00 0.00 36.43 2.52
248 249 4.264442 ACAGGTAGTAGTCCCTCACTGATT 60.264 45.833 0.00 0.00 36.43 2.57
249 250 3.269906 ACAGGTAGTAGTCCCTCACTGAT 59.730 47.826 0.00 0.00 36.43 2.90
250 251 2.648304 ACAGGTAGTAGTCCCTCACTGA 59.352 50.000 0.00 0.00 36.43 3.41
251 252 2.755655 CACAGGTAGTAGTCCCTCACTG 59.244 54.545 0.00 0.00 36.43 3.66
252 253 2.379226 ACACAGGTAGTAGTCCCTCACT 59.621 50.000 0.00 0.00 39.41 3.41
253 254 2.805194 ACACAGGTAGTAGTCCCTCAC 58.195 52.381 0.00 0.00 0.00 3.51
254 255 3.537795 AACACAGGTAGTAGTCCCTCA 57.462 47.619 0.00 0.00 0.00 3.86
255 256 4.583907 GGATAACACAGGTAGTAGTCCCTC 59.416 50.000 0.00 0.00 0.00 4.30
256 257 4.232354 AGGATAACACAGGTAGTAGTCCCT 59.768 45.833 0.00 0.00 0.00 4.20
257 258 4.341520 CAGGATAACACAGGTAGTAGTCCC 59.658 50.000 0.00 0.00 0.00 4.46
258 259 4.202131 GCAGGATAACACAGGTAGTAGTCC 60.202 50.000 0.00 0.00 0.00 3.85
259 260 4.401519 TGCAGGATAACACAGGTAGTAGTC 59.598 45.833 0.00 0.00 0.00 2.59
260 261 4.350245 TGCAGGATAACACAGGTAGTAGT 58.650 43.478 0.00 0.00 0.00 2.73
261 262 5.339008 TTGCAGGATAACACAGGTAGTAG 57.661 43.478 0.00 0.00 0.00 2.57
262 263 5.950544 ATTGCAGGATAACACAGGTAGTA 57.049 39.130 0.00 0.00 0.00 1.82
263 264 4.844349 ATTGCAGGATAACACAGGTAGT 57.156 40.909 0.00 0.00 0.00 2.73
264 265 5.431765 AGAATTGCAGGATAACACAGGTAG 58.568 41.667 0.00 0.00 0.00 3.18
265 266 5.045942 TGAGAATTGCAGGATAACACAGGTA 60.046 40.000 0.00 0.00 0.00 3.08
266 267 4.263462 TGAGAATTGCAGGATAACACAGGT 60.263 41.667 0.00 0.00 0.00 4.00
267 268 4.095483 GTGAGAATTGCAGGATAACACAGG 59.905 45.833 0.00 0.00 0.00 4.00
268 269 4.696877 TGTGAGAATTGCAGGATAACACAG 59.303 41.667 0.00 0.00 33.10 3.66
269 270 4.650734 TGTGAGAATTGCAGGATAACACA 58.349 39.130 0.00 0.00 34.24 3.72
270 271 5.627499 TTGTGAGAATTGCAGGATAACAC 57.373 39.130 0.00 0.00 0.00 3.32
271 272 5.534278 TGTTTGTGAGAATTGCAGGATAACA 59.466 36.000 0.00 0.00 0.00 2.41
272 273 5.858581 GTGTTTGTGAGAATTGCAGGATAAC 59.141 40.000 0.00 0.00 0.00 1.89
273 274 5.534278 TGTGTTTGTGAGAATTGCAGGATAA 59.466 36.000 0.00 0.00 0.00 1.75
274 275 5.069318 TGTGTTTGTGAGAATTGCAGGATA 58.931 37.500 0.00 0.00 0.00 2.59
275 276 3.890756 TGTGTTTGTGAGAATTGCAGGAT 59.109 39.130 0.00 0.00 0.00 3.24
276 277 3.286353 TGTGTTTGTGAGAATTGCAGGA 58.714 40.909 0.00 0.00 0.00 3.86
277 278 3.713858 TGTGTTTGTGAGAATTGCAGG 57.286 42.857 0.00 0.00 0.00 4.85
278 279 6.441274 ACTAATGTGTTTGTGAGAATTGCAG 58.559 36.000 0.00 0.00 0.00 4.41
279 280 6.389830 ACTAATGTGTTTGTGAGAATTGCA 57.610 33.333 0.00 0.00 0.00 4.08
280 281 5.858581 GGACTAATGTGTTTGTGAGAATTGC 59.141 40.000 0.00 0.00 0.00 3.56
281 282 6.207417 AGGGACTAATGTGTTTGTGAGAATTG 59.793 38.462 0.00 0.00 36.02 2.32
282 283 6.306987 AGGGACTAATGTGTTTGTGAGAATT 58.693 36.000 0.00 0.00 36.02 2.17
283 284 5.880901 AGGGACTAATGTGTTTGTGAGAAT 58.119 37.500 0.00 0.00 36.02 2.40
284 285 5.163248 TGAGGGACTAATGTGTTTGTGAGAA 60.163 40.000 0.00 0.00 41.55 2.87
285 286 4.346709 TGAGGGACTAATGTGTTTGTGAGA 59.653 41.667 0.00 0.00 41.55 3.27
286 287 4.641396 TGAGGGACTAATGTGTTTGTGAG 58.359 43.478 0.00 0.00 41.55 3.51
287 288 4.698201 TGAGGGACTAATGTGTTTGTGA 57.302 40.909 0.00 0.00 41.55 3.58
288 289 4.821805 AGTTGAGGGACTAATGTGTTTGTG 59.178 41.667 0.00 0.00 41.55 3.33
289 290 5.048846 AGTTGAGGGACTAATGTGTTTGT 57.951 39.130 0.00 0.00 41.55 2.83
290 291 5.643777 CCTAGTTGAGGGACTAATGTGTTTG 59.356 44.000 0.00 0.00 41.55 2.93
291 292 5.805728 CCTAGTTGAGGGACTAATGTGTTT 58.194 41.667 0.00 0.00 41.55 2.83
292 293 5.422214 CCTAGTTGAGGGACTAATGTGTT 57.578 43.478 0.00 0.00 41.55 3.32
308 309 6.597562 TGGAGTATTGACAACAAACCTAGTT 58.402 36.000 0.00 0.00 39.54 2.24
309 310 6.182507 TGGAGTATTGACAACAAACCTAGT 57.817 37.500 0.00 0.00 39.54 2.57
310 311 7.504924 TTTGGAGTATTGACAACAAACCTAG 57.495 36.000 0.00 0.00 39.54 3.02
311 312 7.201839 GGTTTTGGAGTATTGACAACAAACCTA 60.202 37.037 0.00 0.00 39.54 3.08
312 313 6.406512 GGTTTTGGAGTATTGACAACAAACCT 60.407 38.462 0.00 0.00 39.54 3.50
313 314 5.751509 GGTTTTGGAGTATTGACAACAAACC 59.248 40.000 0.00 0.00 39.54 3.27
314 315 6.334202 TGGTTTTGGAGTATTGACAACAAAC 58.666 36.000 0.00 0.00 39.54 2.93
315 316 6.531503 TGGTTTTGGAGTATTGACAACAAA 57.468 33.333 0.00 0.00 39.54 2.83
316 317 6.531503 TTGGTTTTGGAGTATTGACAACAA 57.468 33.333 0.00 0.00 40.42 2.83
317 318 6.723298 ATTGGTTTTGGAGTATTGACAACA 57.277 33.333 0.00 0.00 0.00 3.33
318 319 7.812669 CCTAATTGGTTTTGGAGTATTGACAAC 59.187 37.037 0.00 0.00 32.54 3.32
319 320 7.039363 CCCTAATTGGTTTTGGAGTATTGACAA 60.039 37.037 0.00 0.00 32.54 3.18
320 321 6.435904 CCCTAATTGGTTTTGGAGTATTGACA 59.564 38.462 0.00 0.00 32.54 3.58
321 322 6.127451 CCCCTAATTGGTTTTGGAGTATTGAC 60.127 42.308 0.00 0.00 32.54 3.18
322 323 5.955355 CCCCTAATTGGTTTTGGAGTATTGA 59.045 40.000 0.00 0.00 32.54 2.57
323 324 5.719563 ACCCCTAATTGGTTTTGGAGTATTG 59.280 40.000 0.00 0.00 32.54 1.90
324 325 5.719563 CACCCCTAATTGGTTTTGGAGTATT 59.280 40.000 0.00 0.00 32.54 1.89
325 326 5.269189 CACCCCTAATTGGTTTTGGAGTAT 58.731 41.667 0.00 0.00 32.54 2.12
326 327 4.509482 CCACCCCTAATTGGTTTTGGAGTA 60.509 45.833 0.00 0.00 32.54 2.59
327 328 3.506398 CACCCCTAATTGGTTTTGGAGT 58.494 45.455 0.00 0.00 32.54 3.85
328 329 2.831526 CCACCCCTAATTGGTTTTGGAG 59.168 50.000 0.00 0.00 32.54 3.86
329 330 2.896039 CCACCCCTAATTGGTTTTGGA 58.104 47.619 0.00 0.00 32.54 3.53
330 331 1.277842 GCCACCCCTAATTGGTTTTGG 59.722 52.381 0.00 0.00 35.09 3.28
331 332 1.974236 TGCCACCCCTAATTGGTTTTG 59.026 47.619 0.00 0.00 35.09 2.44
332 333 1.974957 GTGCCACCCCTAATTGGTTTT 59.025 47.619 0.00 0.00 35.09 2.43
333 334 1.149077 AGTGCCACCCCTAATTGGTTT 59.851 47.619 0.00 0.00 35.09 3.27
334 335 0.783850 AGTGCCACCCCTAATTGGTT 59.216 50.000 0.00 0.00 35.09 3.67
335 336 1.564348 CTAGTGCCACCCCTAATTGGT 59.436 52.381 0.00 0.00 35.09 3.67
336 337 1.843851 TCTAGTGCCACCCCTAATTGG 59.156 52.381 0.00 0.00 35.81 3.16
337 338 3.480470 CATCTAGTGCCACCCCTAATTG 58.520 50.000 0.00 0.00 0.00 2.32
338 339 3.864789 CATCTAGTGCCACCCCTAATT 57.135 47.619 0.00 0.00 0.00 1.40
350 351 9.329913 GTTTTTGTTATGTAAGTGCATCTAGTG 57.670 33.333 0.00 0.00 0.00 2.74
351 352 9.062524 TGTTTTTGTTATGTAAGTGCATCTAGT 57.937 29.630 0.00 0.00 0.00 2.57
378 379 8.735692 TGTTCTTGTTCATCATGCTGATATAA 57.264 30.769 0.00 0.00 34.28 0.98
385 386 5.475909 AGATGTTGTTCTTGTTCATCATGCT 59.524 36.000 0.00 0.00 37.80 3.79
415 416 9.771534 AGCTCTTTCAACAGATAATTATCCTAC 57.228 33.333 19.67 0.00 33.17 3.18
430 431 5.573337 ATGCATTCCTTAGCTCTTTCAAC 57.427 39.130 0.00 0.00 0.00 3.18
437 438 8.159344 ACTGTAAATTATGCATTCCTTAGCTC 57.841 34.615 3.54 0.00 0.00 4.09
467 468 4.290155 CAACAGGTGATCAAAACTTTCGG 58.710 43.478 0.00 0.00 0.00 4.30
493 494 3.310774 CGTATTGCTTGGGTCAGATCAAG 59.689 47.826 10.48 10.48 42.19 3.02
508 509 9.562583 TTAAACCTTCATTATCAAACGTATTGC 57.437 29.630 0.00 0.00 0.00 3.56
523 524 6.460537 GGGAAAACTCACGTTTAAACCTTCAT 60.461 38.462 12.66 0.00 42.28 2.57
600 601 6.294286 GCTTACTACTCCCTTCTAGTAGCATG 60.294 46.154 9.58 0.00 46.88 4.06
601 602 5.771165 GCTTACTACTCCCTTCTAGTAGCAT 59.229 44.000 9.58 0.00 46.88 3.79
602 603 5.131784 GCTTACTACTCCCTTCTAGTAGCA 58.868 45.833 9.58 0.00 46.88 3.49
603 604 4.213906 CGCTTACTACTCCCTTCTAGTAGC 59.786 50.000 9.58 0.00 46.88 3.58
605 606 5.363939 GACGCTTACTACTCCCTTCTAGTA 58.636 45.833 0.00 0.00 0.00 1.82
606 607 4.198530 GACGCTTACTACTCCCTTCTAGT 58.801 47.826 0.00 0.00 0.00 2.57
619 620 1.373812 GGGGTGTTGGACGCTTACT 59.626 57.895 0.00 0.00 37.65 2.24
746 748 6.282930 GTGCCATTATGGTTGCAGATAAATT 58.717 36.000 13.28 0.00 40.46 1.82
758 760 3.327757 AGATATCACCGTGCCATTATGGT 59.672 43.478 13.28 0.00 40.46 3.55
761 763 4.973168 ACAAGATATCACCGTGCCATTAT 58.027 39.130 5.32 0.00 0.00 1.28
864 939 3.643978 GCTGGCCGATCGCATCAC 61.644 66.667 10.32 0.00 40.31 3.06
881 956 0.373716 GATAGGGCGTTTGAACAGCG 59.626 55.000 0.00 0.00 32.13 5.18
955 1030 1.156736 CTACTGGGTTTTGCGGTCTG 58.843 55.000 0.00 0.00 0.00 3.51
956 1031 0.605589 GCTACTGGGTTTTGCGGTCT 60.606 55.000 0.00 0.00 0.00 3.85
957 1032 1.583495 GGCTACTGGGTTTTGCGGTC 61.583 60.000 0.00 0.00 0.00 4.79
960 1035 1.024579 ATCGGCTACTGGGTTTTGCG 61.025 55.000 0.00 0.00 0.00 4.85
962 1037 1.006832 CGATCGGCTACTGGGTTTTG 58.993 55.000 7.38 0.00 0.00 2.44
963 1038 0.611714 ACGATCGGCTACTGGGTTTT 59.388 50.000 20.98 0.00 0.00 2.43
1108 1193 1.134340 CGATGGAATAACAACCGGGGA 60.134 52.381 6.32 0.00 0.00 4.81
1114 1199 2.354821 GAGGTGGCGATGGAATAACAAC 59.645 50.000 0.00 0.00 0.00 3.32
1121 1206 3.407967 GGGGAGGTGGCGATGGAA 61.408 66.667 0.00 0.00 0.00 3.53
1242 1327 2.514824 GAAGCAGGGACGGATGGC 60.515 66.667 0.00 0.00 0.00 4.40
1243 1328 2.190578 GGAAGCAGGGACGGATGG 59.809 66.667 0.00 0.00 0.00 3.51
1244 1329 2.190578 GGGAAGCAGGGACGGATG 59.809 66.667 0.00 0.00 0.00 3.51
1245 1330 3.090532 GGGGAAGCAGGGACGGAT 61.091 66.667 0.00 0.00 0.00 4.18
1248 1333 4.410400 GGTGGGGAAGCAGGGACG 62.410 72.222 0.00 0.00 0.00 4.79
1274 1359 1.379044 GGGTTGCTGATCACTGGGG 60.379 63.158 0.00 0.00 0.00 4.96
1324 1409 2.894387 GCTGATCACTGGGCTCGC 60.894 66.667 0.00 0.00 0.00 5.03
1350 1435 2.367202 GGAAGCAGGGACGGATGGA 61.367 63.158 0.00 0.00 0.00 3.41
1563 1663 3.018856 GGGCATGATCTTGTTGATGTCA 58.981 45.455 10.05 0.00 35.14 3.58
1694 1794 7.484959 GCTAATAACAGTGCCAAAAATACTGAC 59.515 37.037 10.24 0.00 43.35 3.51
1710 1822 5.704515 CCTCCTCCAATCATGCTAATAACAG 59.295 44.000 0.00 0.00 0.00 3.16
1742 1866 6.250819 CCGCTGTCATAACATAGACAAAAAG 58.749 40.000 0.00 0.00 43.48 2.27
1768 1892 1.376466 GTCCAGTGGTGGCACAGAT 59.624 57.895 20.82 0.45 44.60 2.90
1769 1893 2.818169 GGTCCAGTGGTGGCACAGA 61.818 63.158 20.82 1.72 44.60 3.41
1771 1895 3.884774 GGGTCCAGTGGTGGCACA 61.885 66.667 20.82 2.61 44.60 4.57
1840 1964 6.531594 GCCAAATTATTTAGTGAAGGCAGAAC 59.468 38.462 8.85 0.00 39.35 3.01
1918 2047 1.755783 GATGGCTCTGCAAAGGGGG 60.756 63.158 0.00 0.00 0.00 5.40
1919 2048 1.000521 TGATGGCTCTGCAAAGGGG 60.001 57.895 0.00 0.00 0.00 4.79
2009 2146 5.284864 TGACAGCTAATTCATCATCTCGAC 58.715 41.667 0.00 0.00 0.00 4.20
2044 2181 8.725256 TCCCTCACTATACTCAAACTACTAGAT 58.275 37.037 0.00 0.00 0.00 1.98
2111 2248 2.169352 AGATCTAAATCGCCAGCACACT 59.831 45.455 0.00 0.00 36.97 3.55
2145 2283 0.656205 GTGCACGCGTTGGTACTTTG 60.656 55.000 10.22 0.00 0.00 2.77
2146 2284 1.090625 TGTGCACGCGTTGGTACTTT 61.091 50.000 10.22 0.00 0.00 2.66
2147 2285 0.882927 ATGTGCACGCGTTGGTACTT 60.883 50.000 10.22 4.60 0.00 2.24
2148 2286 0.882927 AATGTGCACGCGTTGGTACT 60.883 50.000 10.22 0.00 0.00 2.73
2151 2879 1.444119 AAGAATGTGCACGCGTTGGT 61.444 50.000 10.22 0.00 0.00 3.67
2193 2921 3.793144 GAAACTCCGCCGCAGCAG 61.793 66.667 0.00 0.00 39.83 4.24
2205 2933 1.900498 GCAGCTGCACCTGGAAACT 60.900 57.895 33.36 0.00 41.59 2.66
2211 2939 2.124983 ATACGGCAGCTGCACCTG 60.125 61.111 37.63 25.44 44.36 4.00
2218 2946 1.210478 AGAATTCACCATACGGCAGCT 59.790 47.619 8.44 0.00 34.57 4.24
2220 2949 4.631131 TCATAGAATTCACCATACGGCAG 58.369 43.478 8.44 0.00 34.57 4.85
2291 3025 5.066375 CAGATCATTTTATCTTGGGTGCGAA 59.934 40.000 0.00 0.00 33.87 4.70
2292 3026 4.576053 CAGATCATTTTATCTTGGGTGCGA 59.424 41.667 0.00 0.00 33.87 5.10
2306 3040 6.889198 TCGGAGAAATCCTAACAGATCATTT 58.111 36.000 0.00 0.00 0.00 2.32
2313 3047 5.006746 CGGATTTTCGGAGAAATCCTAACAG 59.993 44.000 25.15 15.03 44.37 3.16
2338 3072 1.024046 ACGCATACGGAGCATTGCAA 61.024 50.000 11.91 0.00 46.04 4.08
2349 3083 0.518355 CGGCAAGTGAAACGCATACG 60.518 55.000 0.00 0.00 45.86 3.06
2366 3100 5.388475 GCGTAACACATGCTCTTAATATCGG 60.388 44.000 0.00 0.00 36.15 4.18
2367 3101 5.599715 GCGTAACACATGCTCTTAATATCG 58.400 41.667 0.00 0.00 36.15 2.92
2386 3120 6.107302 GCGTATTCGTAGACGTCTAGCGTA 62.107 50.000 29.33 24.84 45.95 4.42
2394 3128 2.542411 GGGAATGCGTATTCGTAGACGT 60.542 50.000 18.22 0.00 42.93 4.34
2398 3132 2.609737 GGAGGGGAATGCGTATTCGTAG 60.610 54.545 18.22 0.00 42.93 3.51
2402 3136 0.765510 AGGGAGGGGAATGCGTATTC 59.234 55.000 16.88 16.88 41.59 1.75
2403 3137 0.765510 GAGGGAGGGGAATGCGTATT 59.234 55.000 0.00 0.00 0.00 1.89
2409 3143 0.328258 AACGTTGAGGGAGGGGAATG 59.672 55.000 0.00 0.00 0.00 2.67
2410 3144 1.838077 CTAACGTTGAGGGAGGGGAAT 59.162 52.381 11.99 0.00 0.00 3.01
2433 3167 9.227777 GGGCTATCGGTGTCTTAATTAATTAAT 57.772 33.333 18.58 4.81 32.36 1.40
2442 3176 1.766494 TCGGGCTATCGGTGTCTTAA 58.234 50.000 0.00 0.00 0.00 1.85
2443 3177 1.766494 TTCGGGCTATCGGTGTCTTA 58.234 50.000 0.00 0.00 0.00 2.10
2444 3178 0.899720 TTTCGGGCTATCGGTGTCTT 59.100 50.000 0.00 0.00 0.00 3.01
2445 3179 0.899720 TTTTCGGGCTATCGGTGTCT 59.100 50.000 0.00 0.00 0.00 3.41
2446 3180 1.729284 TTTTTCGGGCTATCGGTGTC 58.271 50.000 0.00 0.00 0.00 3.67
2447 3181 2.285977 GATTTTTCGGGCTATCGGTGT 58.714 47.619 0.00 0.00 0.00 4.16
2495 3229 1.786937 TGGCCCTTTCTCTGCAAAAA 58.213 45.000 0.00 0.00 0.00 1.94
2539 3273 1.184970 TGGAGTCAGGCACGACATCA 61.185 55.000 9.38 4.64 38.43 3.07
2573 3307 7.603651 ACTTTCTGAGTGTTCGTCAGTTATAT 58.396 34.615 0.31 0.00 41.92 0.86
2575 3309 5.844004 ACTTTCTGAGTGTTCGTCAGTTAT 58.156 37.500 0.31 0.00 41.92 1.89
2588 3322 4.857679 ACGGTAGGATAGACTTTCTGAGT 58.142 43.478 0.00 0.00 42.70 3.41
2593 3327 3.633065 AGCTGACGGTAGGATAGACTTTC 59.367 47.826 0.00 0.00 0.00 2.62
2607 3341 3.188786 GGCGCTAACAGCTGACGG 61.189 66.667 23.35 10.28 39.60 4.79
2654 3390 8.579006 TGAAGTGCATGTCTTTGATAAGAAAAT 58.421 29.630 0.00 0.00 41.86 1.82
2698 3437 6.016024 CCTTGATCACTCAAAAGACAAATCCA 60.016 38.462 0.00 0.00 40.78 3.41
2705 3444 4.899502 TCTCCCTTGATCACTCAAAAGAC 58.100 43.478 0.00 0.00 40.78 3.01
2713 3452 2.613977 CGCAAACTCTCCCTTGATCACT 60.614 50.000 0.00 0.00 0.00 3.41
2724 3463 0.874390 TTCATGCCACGCAAACTCTC 59.126 50.000 0.00 0.00 43.62 3.20
2726 3465 1.068333 ACATTCATGCCACGCAAACTC 60.068 47.619 0.00 0.00 43.62 3.01
2739 3482 8.428063 TGAACAAATTTCTTTACCCACATTCAT 58.572 29.630 0.00 0.00 0.00 2.57
2758 3501 7.759489 ATAGTTTTATCAGCCTGTGAACAAA 57.241 32.000 0.00 0.00 39.19 2.83
2767 3510 8.638629 ACTCGTAGATATAGTTTTATCAGCCT 57.361 34.615 0.00 0.00 33.89 4.58
2787 3530 2.557056 TCTCGGATTTTGTCTGACTCGT 59.443 45.455 9.51 0.00 37.31 4.18
2788 3531 3.217599 TCTCGGATTTTGTCTGACTCG 57.782 47.619 9.51 4.15 37.31 4.18
2885 3633 8.591312 CGCCGTTTTCATCAATTTGTTTATTAT 58.409 29.630 0.00 0.00 0.00 1.28
2892 3640 3.634568 TCGCCGTTTTCATCAATTTGT 57.365 38.095 0.00 0.00 0.00 2.83
2893 3641 4.143347 CCTTTCGCCGTTTTCATCAATTTG 60.143 41.667 0.00 0.00 0.00 2.32
2916 3675 5.392380 GGATGGATGAGTTCATGTGTGTTTC 60.392 44.000 0.00 0.00 36.57 2.78
2922 3681 2.579873 GGGGATGGATGAGTTCATGTG 58.420 52.381 0.00 0.00 36.57 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.