Multiple sequence alignment - TraesCS2A01G181500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G181500 chr2A 100.000 4053 0 0 1 4053 140555183 140559235 0.000000e+00 7485.0
1 TraesCS2A01G181500 chr2A 93.253 1156 48 10 2058 3205 139923221 139922088 0.000000e+00 1676.0
2 TraesCS2A01G181500 chr2A 89.728 1139 58 31 404 1501 139937745 139936625 0.000000e+00 1400.0
3 TraesCS2A01G181500 chr2A 95.250 400 16 1 1 397 140516416 140516815 7.390000e-177 630.0
4 TraesCS2A01G181500 chr2A 95.238 315 15 0 1489 1803 139932104 139931790 2.180000e-137 499.0
5 TraesCS2A01G181500 chr2A 86.874 419 42 8 3639 4053 668028410 668028001 1.330000e-124 457.0
6 TraesCS2A01G181500 chr2A 96.313 217 8 0 1799 2015 139923432 139923216 1.390000e-94 357.0
7 TraesCS2A01G181500 chr2D 94.085 2671 94 26 569 3210 133050123 133052758 0.000000e+00 3999.0
8 TraesCS2A01G181500 chr2D 100.000 30 0 0 531 560 133050111 133050140 5.660000e-04 56.5
9 TraesCS2A01G181500 chr2B 94.049 2588 82 28 660 3210 188811916 188814468 0.000000e+00 3860.0
10 TraesCS2A01G181500 chr7A 91.069 851 61 10 3214 4053 532683993 532683147 0.000000e+00 1136.0
11 TraesCS2A01G181500 chr7A 86.044 867 87 17 3209 4050 11034759 11035616 0.000000e+00 900.0
12 TraesCS2A01G181500 chr6A 90.632 854 60 11 3211 4053 131239292 131238448 0.000000e+00 1116.0
13 TraesCS2A01G181500 chr6A 92.020 401 28 2 1 397 442025727 442026127 9.840000e-156 560.0
14 TraesCS2A01G181500 chr6A 92.000 400 29 1 1 397 370569049 370569448 3.540000e-155 558.0
15 TraesCS2A01G181500 chr4A 87.251 753 77 13 3316 4053 545103263 545102515 0.000000e+00 841.0
16 TraesCS2A01G181500 chr4A 83.126 883 106 29 3198 4050 530828443 530829312 0.000000e+00 765.0
17 TraesCS2A01G181500 chr1D 86.042 566 55 12 3207 3765 332968999 332968451 1.620000e-163 586.0
18 TraesCS2A01G181500 chr3B 93.000 400 25 1 1 397 739311175 739310776 7.550000e-162 580.0
19 TraesCS2A01G181500 chr3B 92.231 399 29 1 1 397 487858723 487858325 7.600000e-157 564.0
20 TraesCS2A01G181500 chr1A 92.519 401 26 2 1 397 31790583 31790983 4.540000e-159 571.0
21 TraesCS2A01G181500 chr1A 92.020 401 28 2 1 397 31784021 31784421 9.840000e-156 560.0
22 TraesCS2A01G181500 chr1A 86.842 418 45 4 3639 4053 409951443 409951853 3.690000e-125 459.0
23 TraesCS2A01G181500 chr5B 92.481 399 28 1 1 397 59989717 59990115 1.630000e-158 569.0
24 TraesCS2A01G181500 chr1B 92.020 401 26 4 1 397 633699720 633700118 3.540000e-155 558.0
25 TraesCS2A01G181500 chr4D 86.928 153 18 2 3628 3779 9591776 9591625 1.940000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G181500 chr2A 140555183 140559235 4052 False 7485.00 7485 100.0000 1 4053 1 chr2A.!!$F2 4052
1 TraesCS2A01G181500 chr2A 139936625 139937745 1120 True 1400.00 1400 89.7280 404 1501 1 chr2A.!!$R2 1097
2 TraesCS2A01G181500 chr2A 139922088 139923432 1344 True 1016.50 1676 94.7830 1799 3205 2 chr2A.!!$R4 1406
3 TraesCS2A01G181500 chr2D 133050111 133052758 2647 False 2027.75 3999 97.0425 531 3210 2 chr2D.!!$F1 2679
4 TraesCS2A01G181500 chr2B 188811916 188814468 2552 False 3860.00 3860 94.0490 660 3210 1 chr2B.!!$F1 2550
5 TraesCS2A01G181500 chr7A 532683147 532683993 846 True 1136.00 1136 91.0690 3214 4053 1 chr7A.!!$R1 839
6 TraesCS2A01G181500 chr7A 11034759 11035616 857 False 900.00 900 86.0440 3209 4050 1 chr7A.!!$F1 841
7 TraesCS2A01G181500 chr6A 131238448 131239292 844 True 1116.00 1116 90.6320 3211 4053 1 chr6A.!!$R1 842
8 TraesCS2A01G181500 chr4A 545102515 545103263 748 True 841.00 841 87.2510 3316 4053 1 chr4A.!!$R1 737
9 TraesCS2A01G181500 chr4A 530828443 530829312 869 False 765.00 765 83.1260 3198 4050 1 chr4A.!!$F1 852
10 TraesCS2A01G181500 chr1D 332968451 332968999 548 True 586.00 586 86.0420 3207 3765 1 chr1D.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 336 0.028242 CGGTCAGATCTCCTTCGACG 59.972 60.0 0.00 0.0 0.00 5.12 F
373 374 0.031721 CCTCGGCGTTGGAGGTATAC 59.968 60.0 6.85 0.0 44.92 1.47 F
1545 1620 0.179108 ACTCGTTGCGGATTAGGCTC 60.179 55.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 2331 0.100503 AAGTTCACGCAAGCAACACC 59.899 50.0 0.0 0.0 45.62 4.16 R
2257 2335 0.248580 CTGCAAGTTCACGCAAGCAA 60.249 50.0 0.0 0.0 45.62 3.91 R
3054 3132 0.035247 ACCTCGTCGCTTCTACTCCT 60.035 55.0 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.014010 ATCCAAGCCTTTTCCTTGCA 57.986 45.000 0.00 0.00 38.63 4.08
20 21 1.039856 TCCAAGCCTTTTCCTTGCAC 58.960 50.000 0.00 0.00 38.63 4.57
21 22 0.318955 CCAAGCCTTTTCCTTGCACG 60.319 55.000 0.00 0.00 38.63 5.34
22 23 0.318955 CAAGCCTTTTCCTTGCACGG 60.319 55.000 1.99 1.99 34.00 4.94
23 24 1.463553 AAGCCTTTTCCTTGCACGGG 61.464 55.000 9.71 3.87 0.00 5.28
24 25 2.931068 GCCTTTTCCTTGCACGGGG 61.931 63.158 9.71 3.63 0.00 5.73
25 26 1.228429 CCTTTTCCTTGCACGGGGA 60.228 57.895 9.71 3.75 0.00 4.81
26 27 1.244019 CCTTTTCCTTGCACGGGGAG 61.244 60.000 9.71 5.10 32.80 4.30
27 28 0.537371 CTTTTCCTTGCACGGGGAGT 60.537 55.000 9.71 0.00 32.80 3.85
28 29 0.536460 TTTTCCTTGCACGGGGAGTC 60.536 55.000 9.71 0.00 32.80 3.36
29 30 2.406002 TTTCCTTGCACGGGGAGTCC 62.406 60.000 9.71 0.00 32.80 3.85
30 31 3.636231 CCTTGCACGGGGAGTCCA 61.636 66.667 12.30 0.00 34.36 4.02
31 32 2.046892 CTTGCACGGGGAGTCCAG 60.047 66.667 12.30 6.93 34.36 3.86
32 33 4.329545 TTGCACGGGGAGTCCAGC 62.330 66.667 12.30 9.65 36.91 4.85
40 41 3.394836 GGAGTCCAGCCGCCTCTT 61.395 66.667 3.60 0.00 0.00 2.85
41 42 2.058595 GGAGTCCAGCCGCCTCTTA 61.059 63.158 3.60 0.00 0.00 2.10
42 43 1.403687 GGAGTCCAGCCGCCTCTTAT 61.404 60.000 3.60 0.00 0.00 1.73
43 44 1.329256 GAGTCCAGCCGCCTCTTATA 58.671 55.000 0.00 0.00 0.00 0.98
44 45 1.896465 GAGTCCAGCCGCCTCTTATAT 59.104 52.381 0.00 0.00 0.00 0.86
45 46 3.090037 GAGTCCAGCCGCCTCTTATATA 58.910 50.000 0.00 0.00 0.00 0.86
46 47 3.702045 GAGTCCAGCCGCCTCTTATATAT 59.298 47.826 0.00 0.00 0.00 0.86
47 48 3.702045 AGTCCAGCCGCCTCTTATATATC 59.298 47.826 0.00 0.00 0.00 1.63
48 49 3.702045 GTCCAGCCGCCTCTTATATATCT 59.298 47.826 0.00 0.00 0.00 1.98
49 50 4.888239 GTCCAGCCGCCTCTTATATATCTA 59.112 45.833 0.00 0.00 0.00 1.98
50 51 5.360144 GTCCAGCCGCCTCTTATATATCTAA 59.640 44.000 0.00 0.00 0.00 2.10
51 52 5.594725 TCCAGCCGCCTCTTATATATCTAAG 59.405 44.000 2.22 2.22 0.00 2.18
52 53 5.221342 CCAGCCGCCTCTTATATATCTAAGG 60.221 48.000 7.74 0.00 31.02 2.69
53 54 4.896482 AGCCGCCTCTTATATATCTAAGGG 59.104 45.833 7.74 4.77 31.02 3.95
55 56 5.209659 CCGCCTCTTATATATCTAAGGGGT 58.790 45.833 21.77 0.00 46.87 4.95
58 59 7.114866 GCCTCTTATATATCTAAGGGGTGAC 57.885 44.000 21.77 7.53 46.87 3.67
59 60 6.183360 GCCTCTTATATATCTAAGGGGTGACG 60.183 46.154 21.77 3.67 46.87 4.35
60 61 6.321690 CCTCTTATATATCTAAGGGGTGACGG 59.678 46.154 15.60 0.00 42.28 4.79
61 62 5.655532 TCTTATATATCTAAGGGGTGACGGC 59.344 44.000 7.74 0.00 31.02 5.68
62 63 1.349067 ATATCTAAGGGGTGACGGCC 58.651 55.000 0.00 0.00 0.00 6.13
70 71 3.274067 GGTGACGGCCCATTGAAC 58.726 61.111 0.00 0.00 0.00 3.18
71 72 1.602323 GGTGACGGCCCATTGAACA 60.602 57.895 0.00 0.00 0.00 3.18
72 73 1.175983 GGTGACGGCCCATTGAACAA 61.176 55.000 0.00 0.00 0.00 2.83
73 74 0.039527 GTGACGGCCCATTGAACAAC 60.040 55.000 0.00 0.00 0.00 3.32
74 75 0.466372 TGACGGCCCATTGAACAACA 60.466 50.000 0.00 0.00 0.00 3.33
75 76 0.039527 GACGGCCCATTGAACAACAC 60.040 55.000 0.00 0.00 0.00 3.32
76 77 0.753479 ACGGCCCATTGAACAACACA 60.753 50.000 0.00 0.00 0.00 3.72
77 78 0.318614 CGGCCCATTGAACAACACAC 60.319 55.000 0.00 0.00 0.00 3.82
78 79 0.749649 GGCCCATTGAACAACACACA 59.250 50.000 0.00 0.00 0.00 3.72
79 80 1.137872 GGCCCATTGAACAACACACAA 59.862 47.619 0.00 0.00 0.00 3.33
80 81 2.224257 GGCCCATTGAACAACACACAAT 60.224 45.455 0.00 0.00 35.10 2.71
81 82 3.059166 GCCCATTGAACAACACACAATC 58.941 45.455 0.00 0.00 32.92 2.67
82 83 3.307674 CCCATTGAACAACACACAATCG 58.692 45.455 0.00 0.00 32.92 3.34
83 84 3.004210 CCCATTGAACAACACACAATCGA 59.996 43.478 0.00 0.00 32.92 3.59
84 85 4.321156 CCCATTGAACAACACACAATCGAT 60.321 41.667 0.00 0.00 32.92 3.59
85 86 4.853196 CCATTGAACAACACACAATCGATC 59.147 41.667 0.00 0.00 32.92 3.69
86 87 5.451039 CATTGAACAACACACAATCGATCA 58.549 37.500 0.00 0.00 32.92 2.92
87 88 5.491635 TTGAACAACACACAATCGATCAA 57.508 34.783 0.00 0.00 0.00 2.57
88 89 5.491635 TGAACAACACACAATCGATCAAA 57.508 34.783 0.00 0.00 0.00 2.69
89 90 6.070897 TGAACAACACACAATCGATCAAAT 57.929 33.333 0.00 0.00 0.00 2.32
90 91 6.142139 TGAACAACACACAATCGATCAAATC 58.858 36.000 0.00 0.00 0.00 2.17
91 92 5.687770 ACAACACACAATCGATCAAATCA 57.312 34.783 0.00 0.00 0.00 2.57
92 93 6.258230 ACAACACACAATCGATCAAATCAT 57.742 33.333 0.00 0.00 0.00 2.45
93 94 6.317088 ACAACACACAATCGATCAAATCATC 58.683 36.000 0.00 0.00 0.00 2.92
94 95 6.149973 ACAACACACAATCGATCAAATCATCT 59.850 34.615 0.00 0.00 0.00 2.90
95 96 7.334171 ACAACACACAATCGATCAAATCATCTA 59.666 33.333 0.00 0.00 0.00 1.98
96 97 7.239166 ACACACAATCGATCAAATCATCTAC 57.761 36.000 0.00 0.00 0.00 2.59
97 98 6.258727 ACACACAATCGATCAAATCATCTACC 59.741 38.462 0.00 0.00 0.00 3.18
98 99 6.258507 CACACAATCGATCAAATCATCTACCA 59.741 38.462 0.00 0.00 0.00 3.25
99 100 6.258727 ACACAATCGATCAAATCATCTACCAC 59.741 38.462 0.00 0.00 0.00 4.16
100 101 6.481313 CACAATCGATCAAATCATCTACCACT 59.519 38.462 0.00 0.00 0.00 4.00
101 102 7.011763 CACAATCGATCAAATCATCTACCACTT 59.988 37.037 0.00 0.00 0.00 3.16
102 103 7.554118 ACAATCGATCAAATCATCTACCACTTT 59.446 33.333 0.00 0.00 0.00 2.66
103 104 8.400947 CAATCGATCAAATCATCTACCACTTTT 58.599 33.333 0.00 0.00 0.00 2.27
104 105 7.921786 TCGATCAAATCATCTACCACTTTTT 57.078 32.000 0.00 0.00 0.00 1.94
105 106 9.613428 ATCGATCAAATCATCTACCACTTTTTA 57.387 29.630 0.00 0.00 0.00 1.52
106 107 9.613428 TCGATCAAATCATCTACCACTTTTTAT 57.387 29.630 0.00 0.00 0.00 1.40
107 108 9.869844 CGATCAAATCATCTACCACTTTTTATC 57.130 33.333 0.00 0.00 0.00 1.75
129 130 9.916360 TTATCTTTTATCTTTTCTCCCTAACCC 57.084 33.333 0.00 0.00 0.00 4.11
130 131 7.584396 TCTTTTATCTTTTCTCCCTAACCCT 57.416 36.000 0.00 0.00 0.00 4.34
131 132 8.689707 TCTTTTATCTTTTCTCCCTAACCCTA 57.310 34.615 0.00 0.00 0.00 3.53
132 133 8.769359 TCTTTTATCTTTTCTCCCTAACCCTAG 58.231 37.037 0.00 0.00 0.00 3.02
133 134 8.458951 TTTTATCTTTTCTCCCTAACCCTAGT 57.541 34.615 0.00 0.00 0.00 2.57
134 135 8.458951 TTTATCTTTTCTCCCTAACCCTAGTT 57.541 34.615 0.00 0.00 40.15 2.24
135 136 6.563037 ATCTTTTCTCCCTAACCCTAGTTC 57.437 41.667 0.00 0.00 37.42 3.01
136 137 5.662597 TCTTTTCTCCCTAACCCTAGTTCT 58.337 41.667 0.00 0.00 37.42 3.01
137 138 6.089502 TCTTTTCTCCCTAACCCTAGTTCTT 58.910 40.000 0.00 0.00 37.42 2.52
138 139 6.212993 TCTTTTCTCCCTAACCCTAGTTCTTC 59.787 42.308 0.00 0.00 37.42 2.87
139 140 4.969136 TCTCCCTAACCCTAGTTCTTCT 57.031 45.455 0.00 0.00 37.42 2.85
140 141 5.286760 TCTCCCTAACCCTAGTTCTTCTT 57.713 43.478 0.00 0.00 37.42 2.52
141 142 5.270794 TCTCCCTAACCCTAGTTCTTCTTC 58.729 45.833 0.00 0.00 37.42 2.87
142 143 4.359996 TCCCTAACCCTAGTTCTTCTTCC 58.640 47.826 0.00 0.00 37.42 3.46
143 144 4.046876 TCCCTAACCCTAGTTCTTCTTCCT 59.953 45.833 0.00 0.00 37.42 3.36
144 145 4.406326 CCCTAACCCTAGTTCTTCTTCCTC 59.594 50.000 0.00 0.00 37.42 3.71
145 146 4.098196 CCTAACCCTAGTTCTTCTTCCTCG 59.902 50.000 0.00 0.00 37.42 4.63
146 147 3.172471 ACCCTAGTTCTTCTTCCTCGT 57.828 47.619 0.00 0.00 0.00 4.18
147 148 3.508426 ACCCTAGTTCTTCTTCCTCGTT 58.492 45.455 0.00 0.00 0.00 3.85
148 149 3.510753 ACCCTAGTTCTTCTTCCTCGTTC 59.489 47.826 0.00 0.00 0.00 3.95
149 150 3.764972 CCCTAGTTCTTCTTCCTCGTTCT 59.235 47.826 0.00 0.00 0.00 3.01
150 151 4.221041 CCCTAGTTCTTCTTCCTCGTTCTT 59.779 45.833 0.00 0.00 0.00 2.52
151 152 5.404096 CCTAGTTCTTCTTCCTCGTTCTTC 58.596 45.833 0.00 0.00 0.00 2.87
152 153 3.903360 AGTTCTTCTTCCTCGTTCTTCG 58.097 45.455 0.00 0.00 41.41 3.79
153 154 3.318557 AGTTCTTCTTCCTCGTTCTTCGT 59.681 43.478 0.00 0.00 40.80 3.85
154 155 3.555917 TCTTCTTCCTCGTTCTTCGTC 57.444 47.619 0.00 0.00 40.80 4.20
155 156 3.147629 TCTTCTTCCTCGTTCTTCGTCT 58.852 45.455 0.00 0.00 40.80 4.18
156 157 2.991434 TCTTCCTCGTTCTTCGTCTG 57.009 50.000 0.00 0.00 40.80 3.51
157 158 2.228059 TCTTCCTCGTTCTTCGTCTGT 58.772 47.619 0.00 0.00 40.80 3.41
158 159 2.621998 TCTTCCTCGTTCTTCGTCTGTT 59.378 45.455 0.00 0.00 40.80 3.16
159 160 2.701073 TCCTCGTTCTTCGTCTGTTC 57.299 50.000 0.00 0.00 40.80 3.18
160 161 2.228059 TCCTCGTTCTTCGTCTGTTCT 58.772 47.619 0.00 0.00 40.80 3.01
161 162 2.621998 TCCTCGTTCTTCGTCTGTTCTT 59.378 45.455 0.00 0.00 40.80 2.52
162 163 2.981140 CCTCGTTCTTCGTCTGTTCTTC 59.019 50.000 0.00 0.00 40.80 2.87
163 164 3.304794 CCTCGTTCTTCGTCTGTTCTTCT 60.305 47.826 0.00 0.00 40.80 2.85
164 165 4.291783 CTCGTTCTTCGTCTGTTCTTCTT 58.708 43.478 0.00 0.00 40.80 2.52
165 166 4.042398 TCGTTCTTCGTCTGTTCTTCTTG 58.958 43.478 0.00 0.00 40.80 3.02
166 167 3.797256 CGTTCTTCGTCTGTTCTTCTTGT 59.203 43.478 0.00 0.00 34.52 3.16
167 168 4.267928 CGTTCTTCGTCTGTTCTTCTTGTT 59.732 41.667 0.00 0.00 34.52 2.83
168 169 5.493735 GTTCTTCGTCTGTTCTTCTTGTTG 58.506 41.667 0.00 0.00 0.00 3.33
169 170 3.555956 TCTTCGTCTGTTCTTCTTGTTGC 59.444 43.478 0.00 0.00 0.00 4.17
170 171 2.899976 TCGTCTGTTCTTCTTGTTGCA 58.100 42.857 0.00 0.00 0.00 4.08
171 172 2.866156 TCGTCTGTTCTTCTTGTTGCAG 59.134 45.455 0.00 0.00 0.00 4.41
172 173 2.032549 CGTCTGTTCTTCTTGTTGCAGG 60.033 50.000 0.00 0.00 0.00 4.85
173 174 2.291741 GTCTGTTCTTCTTGTTGCAGGG 59.708 50.000 0.00 0.00 0.00 4.45
174 175 1.000938 CTGTTCTTCTTGTTGCAGGGC 60.001 52.381 0.00 0.00 0.00 5.19
175 176 0.040067 GTTCTTCTTGTTGCAGGGCG 60.040 55.000 0.00 0.00 0.00 6.13
176 177 1.172180 TTCTTCTTGTTGCAGGGCGG 61.172 55.000 0.00 0.00 0.00 6.13
177 178 3.273080 CTTCTTGTTGCAGGGCGGC 62.273 63.158 0.00 0.00 0.00 6.53
193 194 3.145551 GCGAACCTCGAGGCCCTA 61.146 66.667 31.56 0.00 43.74 3.53
194 195 3.121019 CGAACCTCGAGGCCCTAG 58.879 66.667 31.56 14.29 43.74 3.02
195 196 2.491022 CGAACCTCGAGGCCCTAGG 61.491 68.421 31.56 12.90 43.74 3.02
196 197 2.041819 AACCTCGAGGCCCTAGGG 60.042 66.667 31.56 24.89 39.32 3.53
208 209 3.043998 CCTAGGGGAGATCAGGTCG 57.956 63.158 0.00 0.00 33.58 4.79
209 210 0.478942 CCTAGGGGAGATCAGGTCGA 59.521 60.000 0.00 0.00 33.58 4.20
210 211 1.611519 CTAGGGGAGATCAGGTCGAC 58.388 60.000 7.13 7.13 0.00 4.20
211 212 0.185416 TAGGGGAGATCAGGTCGACC 59.815 60.000 27.67 27.67 0.00 4.79
213 214 0.185416 GGGGAGATCAGGTCGACCTA 59.815 60.000 35.80 23.35 46.65 3.08
214 215 1.611519 GGGAGATCAGGTCGACCTAG 58.388 60.000 35.80 27.32 46.65 3.02
215 216 1.611519 GGAGATCAGGTCGACCTAGG 58.388 60.000 35.80 24.45 46.65 3.02
216 217 1.611519 GAGATCAGGTCGACCTAGGG 58.388 60.000 35.80 23.72 46.65 3.53
217 218 0.468400 AGATCAGGTCGACCTAGGGC 60.468 60.000 35.80 23.54 46.65 5.19
218 219 0.755698 GATCAGGTCGACCTAGGGCA 60.756 60.000 35.80 17.65 46.65 5.36
219 220 0.757188 ATCAGGTCGACCTAGGGCAG 60.757 60.000 35.80 22.25 46.65 4.85
220 221 2.760385 AGGTCGACCTAGGGCAGC 60.760 66.667 35.59 11.58 46.48 5.25
221 222 3.851128 GGTCGACCTAGGGCAGCC 61.851 72.222 27.64 12.25 0.00 4.85
222 223 3.851128 GTCGACCTAGGGCAGCCC 61.851 72.222 24.90 24.90 45.90 5.19
263 264 3.239253 GGTCACTCCCGGGTGTGT 61.239 66.667 40.35 26.45 39.66 3.72
264 265 2.030562 GTCACTCCCGGGTGTGTG 59.969 66.667 40.35 33.08 39.66 3.82
265 266 3.238497 TCACTCCCGGGTGTGTGG 61.238 66.667 40.35 24.71 39.66 4.17
270 271 4.212797 CCCGGGTGTGTGGGGTTT 62.213 66.667 14.18 0.00 42.05 3.27
271 272 2.596338 CCGGGTGTGTGGGGTTTC 60.596 66.667 0.00 0.00 0.00 2.78
272 273 2.975799 CGGGTGTGTGGGGTTTCG 60.976 66.667 0.00 0.00 0.00 3.46
273 274 2.596338 GGGTGTGTGGGGTTTCGG 60.596 66.667 0.00 0.00 0.00 4.30
274 275 2.596338 GGTGTGTGGGGTTTCGGG 60.596 66.667 0.00 0.00 0.00 5.14
275 276 2.193786 GTGTGTGGGGTTTCGGGT 59.806 61.111 0.00 0.00 0.00 5.28
276 277 1.895231 GTGTGTGGGGTTTCGGGTC 60.895 63.158 0.00 0.00 0.00 4.46
277 278 2.281970 GTGTGGGGTTTCGGGTCC 60.282 66.667 0.00 0.00 0.00 4.46
278 279 2.773053 TGTGGGGTTTCGGGTCCA 60.773 61.111 0.00 0.00 0.00 4.02
279 280 2.281970 GTGGGGTTTCGGGTCCAC 60.282 66.667 0.00 0.00 42.11 4.02
280 281 2.773053 TGGGGTTTCGGGTCCACA 60.773 61.111 0.00 0.00 34.47 4.17
281 282 2.384433 TGGGGTTTCGGGTCCACAA 61.384 57.895 0.00 0.00 33.88 3.33
282 283 1.152715 GGGGTTTCGGGTCCACAAA 60.153 57.895 0.00 0.00 0.00 2.83
283 284 0.756070 GGGGTTTCGGGTCCACAAAA 60.756 55.000 0.00 0.00 0.00 2.44
284 285 0.671796 GGGTTTCGGGTCCACAAAAG 59.328 55.000 0.00 0.00 0.00 2.27
285 286 0.031585 GGTTTCGGGTCCACAAAAGC 59.968 55.000 0.00 0.00 0.00 3.51
286 287 0.741915 GTTTCGGGTCCACAAAAGCA 59.258 50.000 0.00 0.00 0.00 3.91
287 288 1.339929 GTTTCGGGTCCACAAAAGCAT 59.660 47.619 0.00 0.00 0.00 3.79
288 289 1.243902 TTCGGGTCCACAAAAGCATC 58.756 50.000 0.00 0.00 0.00 3.91
289 290 0.400213 TCGGGTCCACAAAAGCATCT 59.600 50.000 0.00 0.00 0.00 2.90
290 291 0.523072 CGGGTCCACAAAAGCATCTG 59.477 55.000 0.00 0.00 0.00 2.90
291 292 0.244721 GGGTCCACAAAAGCATCTGC 59.755 55.000 0.00 0.00 42.49 4.26
292 293 0.244721 GGTCCACAAAAGCATCTGCC 59.755 55.000 0.00 0.00 43.38 4.85
293 294 0.109597 GTCCACAAAAGCATCTGCCG 60.110 55.000 0.00 0.00 43.38 5.69
294 295 1.213537 CCACAAAAGCATCTGCCGG 59.786 57.895 0.00 0.00 43.38 6.13
295 296 1.444895 CACAAAAGCATCTGCCGGC 60.445 57.895 22.73 22.73 43.38 6.13
296 297 1.604593 ACAAAAGCATCTGCCGGCT 60.605 52.632 29.70 3.84 43.38 5.52
297 298 1.153901 CAAAAGCATCTGCCGGCTG 60.154 57.895 29.70 27.77 40.93 4.85
298 299 1.604593 AAAAGCATCTGCCGGCTGT 60.605 52.632 29.70 14.77 40.93 4.40
299 300 1.589716 AAAAGCATCTGCCGGCTGTC 61.590 55.000 29.70 19.07 40.93 3.51
300 301 3.984193 AAGCATCTGCCGGCTGTCC 62.984 63.158 29.70 18.18 40.93 4.02
301 302 4.479993 GCATCTGCCGGCTGTCCT 62.480 66.667 29.70 13.39 34.31 3.85
302 303 2.513204 CATCTGCCGGCTGTCCTG 60.513 66.667 29.70 20.45 0.00 3.86
303 304 4.479993 ATCTGCCGGCTGTCCTGC 62.480 66.667 29.70 0.00 42.21 4.85
307 308 4.530857 GCCGGCTGTCCTGCGTAT 62.531 66.667 22.15 0.00 32.93 3.06
308 309 2.279517 CCGGCTGTCCTGCGTATC 60.280 66.667 0.00 0.00 0.00 2.24
309 310 2.655364 CGGCTGTCCTGCGTATCG 60.655 66.667 0.00 0.00 0.00 2.92
321 322 4.865761 GTATCGCGCTGCCGGTCA 62.866 66.667 5.56 0.00 34.32 4.02
322 323 4.569023 TATCGCGCTGCCGGTCAG 62.569 66.667 18.16 18.16 45.62 3.51
326 327 4.521062 GCGCTGCCGGTCAGATCT 62.521 66.667 24.32 0.00 45.72 2.75
327 328 2.279120 CGCTGCCGGTCAGATCTC 60.279 66.667 24.32 9.59 45.72 2.75
328 329 2.107953 GCTGCCGGTCAGATCTCC 59.892 66.667 24.32 7.21 45.72 3.71
329 330 2.430610 GCTGCCGGTCAGATCTCCT 61.431 63.158 24.32 0.00 45.72 3.69
330 331 1.965754 GCTGCCGGTCAGATCTCCTT 61.966 60.000 24.32 0.00 45.72 3.36
331 332 0.103937 CTGCCGGTCAGATCTCCTTC 59.896 60.000 17.75 0.00 45.72 3.46
332 333 1.066587 GCCGGTCAGATCTCCTTCG 59.933 63.158 1.90 0.00 0.00 3.79
333 334 1.384989 GCCGGTCAGATCTCCTTCGA 61.385 60.000 1.90 0.00 0.00 3.71
334 335 0.382515 CCGGTCAGATCTCCTTCGAC 59.617 60.000 0.00 0.00 0.00 4.20
335 336 0.028242 CGGTCAGATCTCCTTCGACG 59.972 60.000 0.00 0.00 0.00 5.12
336 337 0.248702 GGTCAGATCTCCTTCGACGC 60.249 60.000 0.00 0.00 0.00 5.19
337 338 0.590230 GTCAGATCTCCTTCGACGCG 60.590 60.000 3.53 3.53 0.00 6.01
338 339 0.743345 TCAGATCTCCTTCGACGCGA 60.743 55.000 15.93 0.00 0.00 5.87
339 340 0.316607 CAGATCTCCTTCGACGCGAG 60.317 60.000 15.93 6.55 37.14 5.03
340 341 1.655959 GATCTCCTTCGACGCGAGC 60.656 63.158 15.93 2.83 37.14 5.03
341 342 2.054140 GATCTCCTTCGACGCGAGCT 62.054 60.000 15.93 0.00 37.14 4.09
342 343 2.329678 ATCTCCTTCGACGCGAGCTG 62.330 60.000 15.93 0.00 37.14 4.24
343 344 4.778415 TCCTTCGACGCGAGCTGC 62.778 66.667 15.93 0.00 37.14 5.25
353 354 3.857854 CGAGCTGCGGTGCATCAC 61.858 66.667 0.00 0.00 38.13 3.06
362 363 4.760047 GTGCATCACCCTCGGCGT 62.760 66.667 6.85 0.00 0.00 5.68
363 364 4.015406 TGCATCACCCTCGGCGTT 62.015 61.111 6.85 0.00 0.00 4.84
364 365 3.499737 GCATCACCCTCGGCGTTG 61.500 66.667 6.85 0.75 0.00 4.10
365 366 2.819595 CATCACCCTCGGCGTTGG 60.820 66.667 6.85 11.41 0.00 3.77
366 367 3.000819 ATCACCCTCGGCGTTGGA 61.001 61.111 20.85 7.93 0.00 3.53
367 368 3.019003 ATCACCCTCGGCGTTGGAG 62.019 63.158 20.85 14.38 0.00 3.86
371 372 3.217231 CCTCGGCGTTGGAGGTAT 58.783 61.111 6.85 0.00 44.92 2.73
372 373 2.422303 CCTCGGCGTTGGAGGTATA 58.578 57.895 6.85 0.00 44.92 1.47
373 374 0.031721 CCTCGGCGTTGGAGGTATAC 59.968 60.000 6.85 0.00 44.92 1.47
374 375 0.317603 CTCGGCGTTGGAGGTATACG 60.318 60.000 6.85 0.00 38.26 3.06
375 376 1.299620 CGGCGTTGGAGGTATACGG 60.300 63.158 0.00 0.00 35.91 4.02
376 377 1.818555 GGCGTTGGAGGTATACGGT 59.181 57.895 0.00 0.00 35.91 4.83
377 378 0.529119 GGCGTTGGAGGTATACGGTG 60.529 60.000 0.00 0.00 35.91 4.94
378 379 0.457035 GCGTTGGAGGTATACGGTGA 59.543 55.000 0.00 0.00 35.91 4.02
379 380 1.800286 GCGTTGGAGGTATACGGTGAC 60.800 57.143 0.00 0.00 35.91 3.67
402 403 2.770134 TCGTGTGCGAACAAAACCT 58.230 47.368 0.00 0.00 44.92 3.50
415 416 6.721321 CGAACAAAACCTACTTTAGCTTTGA 58.279 36.000 0.00 0.00 34.18 2.69
423 424 5.778750 ACCTACTTTAGCTTTGACTAGACCA 59.221 40.000 0.00 0.00 0.00 4.02
475 477 8.883731 CCGACAGGGTCATATAATTGATATTTC 58.116 37.037 0.00 0.00 32.09 2.17
491 493 7.979444 TGATATTTCCGATTTAGGTCATTCC 57.021 36.000 0.00 0.00 0.00 3.01
492 494 6.940298 TGATATTTCCGATTTAGGTCATTCCC 59.060 38.462 0.00 0.00 36.75 3.97
494 496 5.961398 TTTCCGATTTAGGTCATTCCCTA 57.039 39.130 0.00 0.00 35.97 3.53
496 498 5.483685 TCCGATTTAGGTCATTCCCTATG 57.516 43.478 0.00 0.00 36.96 2.23
497 499 4.905456 TCCGATTTAGGTCATTCCCTATGT 59.095 41.667 0.00 0.00 36.96 2.29
498 500 5.368523 TCCGATTTAGGTCATTCCCTATGTT 59.631 40.000 0.00 0.00 36.96 2.71
499 501 6.555738 TCCGATTTAGGTCATTCCCTATGTTA 59.444 38.462 0.00 0.00 36.96 2.41
500 502 7.236847 TCCGATTTAGGTCATTCCCTATGTTAT 59.763 37.037 0.00 0.00 36.96 1.89
501 503 8.537016 CCGATTTAGGTCATTCCCTATGTTATA 58.463 37.037 0.00 0.00 36.96 0.98
665 682 1.101049 CGCCGGCCATGGATTTTACT 61.101 55.000 23.46 0.00 0.00 2.24
735 752 4.929808 GCTGGAAGTATCTTTGTCGAAGAA 59.070 41.667 6.61 0.00 41.56 2.52
736 753 5.062809 GCTGGAAGTATCTTTGTCGAAGAAG 59.937 44.000 6.61 0.00 41.56 2.85
769 786 2.028130 ACTTAGACTCTCTCCCATGCG 58.972 52.381 0.00 0.00 0.00 4.73
944 979 1.137513 GCTCCACGCATATAACCGTC 58.862 55.000 0.00 0.00 38.92 4.79
945 980 1.537348 GCTCCACGCATATAACCGTCA 60.537 52.381 0.00 0.00 38.92 4.35
946 981 2.394708 CTCCACGCATATAACCGTCAG 58.605 52.381 0.00 0.00 35.17 3.51
974 1015 4.966787 ACCGGCGTGGCACCATTT 62.967 61.111 12.86 0.00 43.94 2.32
1234 1286 6.785076 TCCATCATCAACCTGGTAACTTAAA 58.215 36.000 0.00 0.00 37.61 1.52
1247 1299 6.181908 TGGTAACTTAAATTAGCCCGACATT 58.818 36.000 3.67 0.00 32.65 2.71
1286 1338 1.972752 TGCATGCCGTCTTGCACAT 60.973 52.632 16.68 0.00 44.95 3.21
1545 1620 0.179108 ACTCGTTGCGGATTAGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
1578 1653 2.611971 GCAGGACCAGATCACGTACAAA 60.612 50.000 0.00 0.00 0.00 2.83
1722 1797 1.233019 AGTAAGCGATCATGCATGCC 58.767 50.000 22.25 14.31 37.31 4.40
1791 1869 2.350804 CCAAGTTCACATCTGATCTGCG 59.649 50.000 0.00 0.00 0.00 5.18
1932 2010 1.079127 CTACACCGTGAGCAAGGGG 60.079 63.158 5.28 3.07 39.38 4.79
1997 2075 2.671070 CGTGGAGGCCAAGGTGAT 59.329 61.111 5.01 0.00 34.18 3.06
2028 2106 4.452733 GGGAAGGACGTGCTCCGG 62.453 72.222 10.99 0.00 45.10 5.14
2166 2244 4.380628 GTCGTCGACGCCGTCACT 62.381 66.667 32.19 0.00 39.60 3.41
2240 2318 0.380024 TGCATGTTTGGTGACGTGTG 59.620 50.000 0.00 0.00 38.50 3.82
2253 2331 1.988409 CGTGTGCGTAATCGAGTGG 59.012 57.895 0.00 0.00 39.71 4.00
2257 2335 0.389426 GTGCGTAATCGAGTGGGTGT 60.389 55.000 0.00 0.00 39.71 4.16
2258 2336 0.319083 TGCGTAATCGAGTGGGTGTT 59.681 50.000 0.00 0.00 39.71 3.32
2259 2337 0.719465 GCGTAATCGAGTGGGTGTTG 59.281 55.000 0.00 0.00 39.71 3.33
2260 2338 0.719465 CGTAATCGAGTGGGTGTTGC 59.281 55.000 0.00 0.00 39.71 4.17
2308 2386 2.751259 GGAGCTGATCAACAAGATGCAA 59.249 45.455 0.00 0.00 37.00 4.08
3053 3131 2.202932 CTCCTGCCTGCGCGTAAT 60.203 61.111 8.43 0.00 38.08 1.89
3054 3132 1.067416 CTCCTGCCTGCGCGTAATA 59.933 57.895 8.43 0.00 38.08 0.98
3055 3133 0.941463 CTCCTGCCTGCGCGTAATAG 60.941 60.000 8.43 1.32 38.08 1.73
3056 3134 1.956170 CCTGCCTGCGCGTAATAGG 60.956 63.158 8.43 11.94 38.08 2.57
3057 3135 1.067416 CTGCCTGCGCGTAATAGGA 59.933 57.895 14.48 4.28 38.08 2.94
3115 3207 1.870901 GTAGTTAGGACGCGCGTGG 60.871 63.158 42.90 10.32 0.00 4.94
3263 3363 8.918202 TTTAAGGATGTCACATCTAAGTTGTT 57.082 30.769 17.46 3.41 0.00 2.83
3275 3375 9.926751 CACATCTAAGTTGTTTATCACATGATC 57.073 33.333 0.00 0.00 34.43 2.92
3299 3405 7.794041 TCATGGGCTTTAAGATTTATGCAAAT 58.206 30.769 0.00 0.00 37.06 2.32
3324 3430 6.153067 TGTTGTTGTTTTCTTTGACGTGAAT 58.847 32.000 0.00 0.00 0.00 2.57
3393 3505 0.250989 TTTTCCCGATCGGCCTTGTT 60.251 50.000 29.12 0.00 0.00 2.83
3499 3627 0.254747 TGCGCCTAGGCCTTTTGTAT 59.745 50.000 28.09 0.00 37.98 2.29
3518 3646 1.549203 TGGGCAGAATTCAAAGAGCC 58.451 50.000 8.44 11.86 41.29 4.70
3635 3797 6.653320 TGACATCAGTTTTATTTCTAGCCGTT 59.347 34.615 0.00 0.00 0.00 4.44
3636 3798 7.174253 TGACATCAGTTTTATTTCTAGCCGTTT 59.826 33.333 0.00 0.00 0.00 3.60
3637 3799 7.305474 ACATCAGTTTTATTTCTAGCCGTTTG 58.695 34.615 0.00 0.00 0.00 2.93
3638 3800 7.174253 ACATCAGTTTTATTTCTAGCCGTTTGA 59.826 33.333 0.00 0.00 0.00 2.69
3639 3801 7.681939 TCAGTTTTATTTCTAGCCGTTTGAT 57.318 32.000 0.00 0.00 0.00 2.57
3640 3802 8.106247 TCAGTTTTATTTCTAGCCGTTTGATT 57.894 30.769 0.00 0.00 0.00 2.57
3641 3803 8.573035 TCAGTTTTATTTCTAGCCGTTTGATTT 58.427 29.630 0.00 0.00 0.00 2.17
3642 3804 8.638565 CAGTTTTATTTCTAGCCGTTTGATTTG 58.361 33.333 0.00 0.00 0.00 2.32
3643 3805 8.357402 AGTTTTATTTCTAGCCGTTTGATTTGT 58.643 29.630 0.00 0.00 0.00 2.83
3644 3806 8.974408 GTTTTATTTCTAGCCGTTTGATTTGTT 58.026 29.630 0.00 0.00 0.00 2.83
3645 3807 9.535878 TTTTATTTCTAGCCGTTTGATTTGTTT 57.464 25.926 0.00 0.00 0.00 2.83
3646 3808 8.514136 TTATTTCTAGCCGTTTGATTTGTTTG 57.486 30.769 0.00 0.00 0.00 2.93
3647 3809 5.508200 TTCTAGCCGTTTGATTTGTTTGT 57.492 34.783 0.00 0.00 0.00 2.83
3648 3810 4.854399 TCTAGCCGTTTGATTTGTTTGTG 58.146 39.130 0.00 0.00 0.00 3.33
3649 3811 2.200899 AGCCGTTTGATTTGTTTGTGC 58.799 42.857 0.00 0.00 0.00 4.57
3650 3812 2.159114 AGCCGTTTGATTTGTTTGTGCT 60.159 40.909 0.00 0.00 0.00 4.40
3651 3813 2.607180 GCCGTTTGATTTGTTTGTGCTT 59.393 40.909 0.00 0.00 0.00 3.91
3652 3814 3.063316 GCCGTTTGATTTGTTTGTGCTTT 59.937 39.130 0.00 0.00 0.00 3.51
3653 3815 4.576678 CCGTTTGATTTGTTTGTGCTTTG 58.423 39.130 0.00 0.00 0.00 2.77
3654 3816 4.092675 CCGTTTGATTTGTTTGTGCTTTGT 59.907 37.500 0.00 0.00 0.00 2.83
3655 3817 5.390356 CCGTTTGATTTGTTTGTGCTTTGTT 60.390 36.000 0.00 0.00 0.00 2.83
3656 3818 6.076557 CGTTTGATTTGTTTGTGCTTTGTTT 58.923 32.000 0.00 0.00 0.00 2.83
3657 3819 6.576684 CGTTTGATTTGTTTGTGCTTTGTTTT 59.423 30.769 0.00 0.00 0.00 2.43
3658 3820 7.112705 CGTTTGATTTGTTTGTGCTTTGTTTTT 59.887 29.630 0.00 0.00 0.00 1.94
3659 3821 8.416424 GTTTGATTTGTTTGTGCTTTGTTTTTC 58.584 29.630 0.00 0.00 0.00 2.29
3660 3822 7.194607 TGATTTGTTTGTGCTTTGTTTTTCA 57.805 28.000 0.00 0.00 0.00 2.69
3661 3823 7.074502 TGATTTGTTTGTGCTTTGTTTTTCAC 58.925 30.769 0.00 0.00 0.00 3.18
3662 3824 4.637574 TGTTTGTGCTTTGTTTTTCACG 57.362 36.364 0.00 0.00 32.48 4.35
3663 3825 3.430218 TGTTTGTGCTTTGTTTTTCACGG 59.570 39.130 0.00 0.00 32.48 4.94
3664 3826 3.305398 TTGTGCTTTGTTTTTCACGGT 57.695 38.095 0.00 0.00 32.48 4.83
3665 3827 2.869897 TGTGCTTTGTTTTTCACGGTC 58.130 42.857 0.00 0.00 32.48 4.79
3666 3828 1.843753 GTGCTTTGTTTTTCACGGTCG 59.156 47.619 0.00 0.00 0.00 4.79
3667 3829 1.738350 TGCTTTGTTTTTCACGGTCGA 59.262 42.857 0.00 0.00 0.00 4.20
3668 3830 2.223157 TGCTTTGTTTTTCACGGTCGAG 60.223 45.455 0.00 0.00 0.00 4.04
3669 3831 2.223180 GCTTTGTTTTTCACGGTCGAGT 60.223 45.455 0.00 0.00 0.00 4.18
3670 3832 3.350912 CTTTGTTTTTCACGGTCGAGTG 58.649 45.455 0.00 0.00 43.11 3.51
3740 3940 2.732619 GGGAGGCCTACAACGGAGG 61.733 68.421 19.26 0.00 37.12 4.30
3742 3942 1.988406 GAGGCCTACAACGGAGGGT 60.988 63.158 4.42 0.00 34.35 4.34
3753 3953 5.231702 ACAACGGAGGGTGACTATTTTTA 57.768 39.130 0.00 0.00 0.00 1.52
3754 3954 5.812286 ACAACGGAGGGTGACTATTTTTAT 58.188 37.500 0.00 0.00 0.00 1.40
3759 3960 7.823665 ACGGAGGGTGACTATTTTTATTTTTC 58.176 34.615 0.00 0.00 0.00 2.29
3794 3997 1.562008 TCGCCTTGGTTTGATATGGGA 59.438 47.619 0.00 0.00 0.00 4.37
3823 4027 4.173290 AGAATACGAAGAGTCTAGCCCT 57.827 45.455 0.00 0.00 0.00 5.19
3830 4034 4.348754 ACGAAGAGTCTAGCCCTAGAGTAT 59.651 45.833 11.58 6.98 43.73 2.12
3838 4042 9.774413 GAGTCTAGCCCTAGAGTATATTAGATC 57.226 40.741 11.58 0.00 43.73 2.75
3861 4065 0.182061 ACGGTAGCCTCCATCGAGTA 59.818 55.000 0.00 0.00 33.93 2.59
3958 4165 8.643752 GTTTGTTTTTGTTTCGAAATCTGAAGA 58.356 29.630 14.69 3.70 0.00 2.87
3970 4177 2.921634 TCTGAAGAACATCGACTCGG 57.078 50.000 0.00 0.00 0.00 4.63
4009 4217 2.032377 GTGGTGTATGTGTGTTTGTCGG 60.032 50.000 0.00 0.00 0.00 4.79
4027 4235 1.674817 CGGTGGCCCTAGTTACAAGTG 60.675 57.143 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.039856 GTGCAAGGAAAAGGCTTGGA 58.960 50.000 0.00 0.00 0.00 3.53
2 3 0.318955 CGTGCAAGGAAAAGGCTTGG 60.319 55.000 0.00 0.00 0.00 3.61
3 4 0.318955 CCGTGCAAGGAAAAGGCTTG 60.319 55.000 14.14 0.00 0.00 4.01
6 7 2.650778 CCCGTGCAAGGAAAAGGC 59.349 61.111 21.23 0.00 0.00 4.35
8 9 0.537371 ACTCCCCGTGCAAGGAAAAG 60.537 55.000 21.23 15.28 0.00 2.27
9 10 0.536460 GACTCCCCGTGCAAGGAAAA 60.536 55.000 21.23 3.94 0.00 2.29
11 12 2.747686 GACTCCCCGTGCAAGGAA 59.252 61.111 21.23 6.89 0.00 3.36
12 13 3.319198 GGACTCCCCGTGCAAGGA 61.319 66.667 21.23 10.64 33.62 3.36
13 14 3.612247 CTGGACTCCCCGTGCAAGG 62.612 68.421 12.27 12.27 43.71 3.61
14 15 2.046892 CTGGACTCCCCGTGCAAG 60.047 66.667 0.00 0.00 43.71 4.01
15 16 4.329545 GCTGGACTCCCCGTGCAA 62.330 66.667 0.00 0.00 43.71 4.08
25 26 2.016905 ATATAAGAGGCGGCTGGACT 57.983 50.000 19.63 4.10 35.84 3.85
26 27 3.702045 AGATATATAAGAGGCGGCTGGAC 59.298 47.826 19.63 1.04 0.00 4.02
27 28 3.982516 AGATATATAAGAGGCGGCTGGA 58.017 45.455 19.63 0.38 0.00 3.86
28 29 5.221342 CCTTAGATATATAAGAGGCGGCTGG 60.221 48.000 19.63 1.33 35.19 4.85
29 30 5.221342 CCCTTAGATATATAAGAGGCGGCTG 60.221 48.000 19.63 0.00 35.19 4.85
30 31 4.896482 CCCTTAGATATATAAGAGGCGGCT 59.104 45.833 13.09 13.09 35.19 5.52
31 32 4.039366 CCCCTTAGATATATAAGAGGCGGC 59.961 50.000 16.92 0.00 35.19 6.53
32 33 5.069251 CACCCCTTAGATATATAAGAGGCGG 59.931 48.000 15.44 11.90 34.79 6.13
33 34 5.892119 TCACCCCTTAGATATATAAGAGGCG 59.108 44.000 15.44 8.13 34.79 5.52
34 35 6.183360 CGTCACCCCTTAGATATATAAGAGGC 60.183 46.154 15.44 5.78 34.79 4.70
35 36 6.321690 CCGTCACCCCTTAGATATATAAGAGG 59.678 46.154 16.92 15.56 36.86 3.69
36 37 6.183360 GCCGTCACCCCTTAGATATATAAGAG 60.183 46.154 16.92 10.83 35.19 2.85
37 38 5.655532 GCCGTCACCCCTTAGATATATAAGA 59.344 44.000 16.92 0.00 35.19 2.10
38 39 5.163437 GGCCGTCACCCCTTAGATATATAAG 60.163 48.000 9.71 9.71 33.37 1.73
39 40 4.713321 GGCCGTCACCCCTTAGATATATAA 59.287 45.833 0.00 0.00 0.00 0.98
40 41 4.284178 GGCCGTCACCCCTTAGATATATA 58.716 47.826 0.00 0.00 0.00 0.86
41 42 3.105283 GGCCGTCACCCCTTAGATATAT 58.895 50.000 0.00 0.00 0.00 0.86
42 43 2.532843 GGCCGTCACCCCTTAGATATA 58.467 52.381 0.00 0.00 0.00 0.86
43 44 1.349067 GGCCGTCACCCCTTAGATAT 58.651 55.000 0.00 0.00 0.00 1.63
44 45 0.761702 GGGCCGTCACCCCTTAGATA 60.762 60.000 0.00 0.00 45.00 1.98
45 46 2.070650 GGGCCGTCACCCCTTAGAT 61.071 63.158 0.00 0.00 45.00 1.98
46 47 2.686106 GGGCCGTCACCCCTTAGA 60.686 66.667 0.00 0.00 45.00 2.10
53 54 1.175983 TTGTTCAATGGGCCGTCACC 61.176 55.000 0.00 0.00 0.00 4.02
54 55 0.039527 GTTGTTCAATGGGCCGTCAC 60.040 55.000 0.00 0.00 0.00 3.67
55 56 0.466372 TGTTGTTCAATGGGCCGTCA 60.466 50.000 0.00 0.00 0.00 4.35
56 57 0.039527 GTGTTGTTCAATGGGCCGTC 60.040 55.000 0.00 0.00 0.00 4.79
57 58 0.753479 TGTGTTGTTCAATGGGCCGT 60.753 50.000 0.00 0.00 0.00 5.68
58 59 0.318614 GTGTGTTGTTCAATGGGCCG 60.319 55.000 0.00 0.00 0.00 6.13
59 60 0.749649 TGTGTGTTGTTCAATGGGCC 59.250 50.000 0.00 0.00 0.00 5.80
60 61 2.593346 TTGTGTGTTGTTCAATGGGC 57.407 45.000 0.00 0.00 0.00 5.36
61 62 3.004210 TCGATTGTGTGTTGTTCAATGGG 59.996 43.478 0.00 0.00 32.90 4.00
62 63 4.221926 TCGATTGTGTGTTGTTCAATGG 57.778 40.909 0.00 0.00 32.90 3.16
63 64 5.451039 TGATCGATTGTGTGTTGTTCAATG 58.549 37.500 0.00 0.00 32.90 2.82
64 65 5.687770 TGATCGATTGTGTGTTGTTCAAT 57.312 34.783 0.00 0.00 35.00 2.57
65 66 5.491635 TTGATCGATTGTGTGTTGTTCAA 57.508 34.783 0.00 0.00 0.00 2.69
66 67 5.491635 TTTGATCGATTGTGTGTTGTTCA 57.508 34.783 0.00 0.00 0.00 3.18
67 68 6.142139 TGATTTGATCGATTGTGTGTTGTTC 58.858 36.000 0.00 0.00 0.00 3.18
68 69 6.070897 TGATTTGATCGATTGTGTGTTGTT 57.929 33.333 0.00 0.00 0.00 2.83
69 70 5.687770 TGATTTGATCGATTGTGTGTTGT 57.312 34.783 0.00 0.00 0.00 3.32
70 71 6.549061 AGATGATTTGATCGATTGTGTGTTG 58.451 36.000 0.00 0.00 0.00 3.33
71 72 6.748333 AGATGATTTGATCGATTGTGTGTT 57.252 33.333 0.00 0.00 0.00 3.32
72 73 6.258727 GGTAGATGATTTGATCGATTGTGTGT 59.741 38.462 0.00 0.00 0.00 3.72
73 74 6.258507 TGGTAGATGATTTGATCGATTGTGTG 59.741 38.462 0.00 0.00 0.00 3.82
74 75 6.258727 GTGGTAGATGATTTGATCGATTGTGT 59.741 38.462 0.00 0.00 0.00 3.72
75 76 6.481313 AGTGGTAGATGATTTGATCGATTGTG 59.519 38.462 0.00 0.00 0.00 3.33
76 77 6.586344 AGTGGTAGATGATTTGATCGATTGT 58.414 36.000 0.00 0.00 0.00 2.71
77 78 7.488187 AAGTGGTAGATGATTTGATCGATTG 57.512 36.000 0.00 0.00 0.00 2.67
78 79 8.511604 AAAAGTGGTAGATGATTTGATCGATT 57.488 30.769 0.00 0.00 0.00 3.34
79 80 8.511604 AAAAAGTGGTAGATGATTTGATCGAT 57.488 30.769 0.00 0.00 0.00 3.59
80 81 7.921786 AAAAAGTGGTAGATGATTTGATCGA 57.078 32.000 0.00 0.00 0.00 3.59
81 82 9.869844 GATAAAAAGTGGTAGATGATTTGATCG 57.130 33.333 0.00 0.00 0.00 3.69
103 104 9.916360 GGGTTAGGGAGAAAAGATAAAAGATAA 57.084 33.333 0.00 0.00 0.00 1.75
104 105 9.292751 AGGGTTAGGGAGAAAAGATAAAAGATA 57.707 33.333 0.00 0.00 0.00 1.98
105 106 8.176216 AGGGTTAGGGAGAAAAGATAAAAGAT 57.824 34.615 0.00 0.00 0.00 2.40
106 107 7.584396 AGGGTTAGGGAGAAAAGATAAAAGA 57.416 36.000 0.00 0.00 0.00 2.52
107 108 8.549731 ACTAGGGTTAGGGAGAAAAGATAAAAG 58.450 37.037 0.00 0.00 0.00 2.27
108 109 8.458951 ACTAGGGTTAGGGAGAAAAGATAAAA 57.541 34.615 0.00 0.00 0.00 1.52
109 110 8.458951 AACTAGGGTTAGGGAGAAAAGATAAA 57.541 34.615 0.00 0.00 33.39 1.40
110 111 7.905106 AGAACTAGGGTTAGGGAGAAAAGATAA 59.095 37.037 0.00 0.00 35.58 1.75
111 112 7.428335 AGAACTAGGGTTAGGGAGAAAAGATA 58.572 38.462 0.00 0.00 35.58 1.98
112 113 6.273104 AGAACTAGGGTTAGGGAGAAAAGAT 58.727 40.000 0.00 0.00 35.58 2.40
113 114 5.662597 AGAACTAGGGTTAGGGAGAAAAGA 58.337 41.667 0.00 0.00 35.58 2.52
114 115 6.213802 AGAAGAACTAGGGTTAGGGAGAAAAG 59.786 42.308 0.00 0.00 35.58 2.27
115 116 6.089502 AGAAGAACTAGGGTTAGGGAGAAAA 58.910 40.000 0.00 0.00 35.58 2.29
116 117 5.662597 AGAAGAACTAGGGTTAGGGAGAAA 58.337 41.667 0.00 0.00 35.58 2.52
117 118 5.286760 AGAAGAACTAGGGTTAGGGAGAA 57.713 43.478 0.00 0.00 35.58 2.87
118 119 4.969136 AGAAGAACTAGGGTTAGGGAGA 57.031 45.455 0.00 0.00 35.58 3.71
119 120 4.406326 GGAAGAAGAACTAGGGTTAGGGAG 59.594 50.000 0.00 0.00 35.58 4.30
120 121 4.046876 AGGAAGAAGAACTAGGGTTAGGGA 59.953 45.833 0.00 0.00 35.58 4.20
121 122 4.363573 AGGAAGAAGAACTAGGGTTAGGG 58.636 47.826 0.00 0.00 35.58 3.53
122 123 4.098196 CGAGGAAGAAGAACTAGGGTTAGG 59.902 50.000 0.00 0.00 35.58 2.69
123 124 4.705991 ACGAGGAAGAAGAACTAGGGTTAG 59.294 45.833 0.00 0.00 35.58 2.34
124 125 4.670765 ACGAGGAAGAAGAACTAGGGTTA 58.329 43.478 0.00 0.00 35.58 2.85
125 126 3.508426 ACGAGGAAGAAGAACTAGGGTT 58.492 45.455 0.00 0.00 38.52 4.11
126 127 3.172471 ACGAGGAAGAAGAACTAGGGT 57.828 47.619 0.00 0.00 0.00 4.34
127 128 3.764972 AGAACGAGGAAGAAGAACTAGGG 59.235 47.826 0.00 0.00 0.00 3.53
128 129 5.394224 AAGAACGAGGAAGAAGAACTAGG 57.606 43.478 0.00 0.00 0.00 3.02
129 130 5.090083 CGAAGAACGAGGAAGAAGAACTAG 58.910 45.833 0.00 0.00 45.77 2.57
130 131 4.518211 ACGAAGAACGAGGAAGAAGAACTA 59.482 41.667 0.00 0.00 45.77 2.24
131 132 3.318557 ACGAAGAACGAGGAAGAAGAACT 59.681 43.478 0.00 0.00 45.77 3.01
132 133 3.640592 ACGAAGAACGAGGAAGAAGAAC 58.359 45.455 0.00 0.00 45.77 3.01
133 134 3.568853 AGACGAAGAACGAGGAAGAAGAA 59.431 43.478 0.00 0.00 45.77 2.52
134 135 3.058155 CAGACGAAGAACGAGGAAGAAGA 60.058 47.826 0.00 0.00 45.77 2.87
135 136 3.238441 CAGACGAAGAACGAGGAAGAAG 58.762 50.000 0.00 0.00 45.77 2.85
136 137 2.621998 ACAGACGAAGAACGAGGAAGAA 59.378 45.455 0.00 0.00 45.77 2.52
137 138 2.228059 ACAGACGAAGAACGAGGAAGA 58.772 47.619 0.00 0.00 45.77 2.87
138 139 2.708386 ACAGACGAAGAACGAGGAAG 57.292 50.000 0.00 0.00 45.77 3.46
139 140 2.621998 AGAACAGACGAAGAACGAGGAA 59.378 45.455 0.00 0.00 45.77 3.36
140 141 2.228059 AGAACAGACGAAGAACGAGGA 58.772 47.619 0.00 0.00 45.77 3.71
141 142 2.708386 AGAACAGACGAAGAACGAGG 57.292 50.000 0.00 0.00 45.77 4.63
142 143 3.891324 AGAAGAACAGACGAAGAACGAG 58.109 45.455 0.00 0.00 45.77 4.18
143 144 3.984508 AGAAGAACAGACGAAGAACGA 57.015 42.857 0.00 0.00 45.77 3.85
145 146 5.493735 CAACAAGAAGAACAGACGAAGAAC 58.506 41.667 0.00 0.00 0.00 3.01
146 147 4.034048 GCAACAAGAAGAACAGACGAAGAA 59.966 41.667 0.00 0.00 0.00 2.52
147 148 3.555956 GCAACAAGAAGAACAGACGAAGA 59.444 43.478 0.00 0.00 0.00 2.87
148 149 3.309682 TGCAACAAGAAGAACAGACGAAG 59.690 43.478 0.00 0.00 0.00 3.79
149 150 3.266636 TGCAACAAGAAGAACAGACGAA 58.733 40.909 0.00 0.00 0.00 3.85
150 151 2.866156 CTGCAACAAGAAGAACAGACGA 59.134 45.455 0.00 0.00 0.00 4.20
151 152 2.032549 CCTGCAACAAGAAGAACAGACG 60.033 50.000 0.00 0.00 0.00 4.18
152 153 2.291741 CCCTGCAACAAGAAGAACAGAC 59.708 50.000 0.00 0.00 0.00 3.51
153 154 2.575532 CCCTGCAACAAGAAGAACAGA 58.424 47.619 0.00 0.00 0.00 3.41
154 155 1.000938 GCCCTGCAACAAGAAGAACAG 60.001 52.381 0.00 0.00 0.00 3.16
155 156 1.032014 GCCCTGCAACAAGAAGAACA 58.968 50.000 0.00 0.00 0.00 3.18
156 157 0.040067 CGCCCTGCAACAAGAAGAAC 60.040 55.000 0.00 0.00 0.00 3.01
157 158 1.172180 CCGCCCTGCAACAAGAAGAA 61.172 55.000 0.00 0.00 0.00 2.52
158 159 1.600636 CCGCCCTGCAACAAGAAGA 60.601 57.895 0.00 0.00 0.00 2.87
159 160 2.956987 CCGCCCTGCAACAAGAAG 59.043 61.111 0.00 0.00 0.00 2.85
160 161 3.294493 GCCGCCCTGCAACAAGAA 61.294 61.111 0.00 0.00 0.00 2.52
176 177 3.140225 CTAGGGCCTCGAGGTTCGC 62.140 68.421 31.43 22.76 40.21 4.70
177 178 2.491022 CCTAGGGCCTCGAGGTTCG 61.491 68.421 31.43 15.54 42.10 3.95
178 179 2.134933 CCCTAGGGCCTCGAGGTTC 61.135 68.421 31.43 22.74 36.64 3.62
179 180 2.041819 CCCTAGGGCCTCGAGGTT 60.042 66.667 31.43 19.55 36.64 3.50
180 181 4.159108 CCCCTAGGGCCTCGAGGT 62.159 72.222 31.43 15.52 36.64 3.85
181 182 3.819016 CTCCCCTAGGGCCTCGAGG 62.819 73.684 27.83 27.83 43.94 4.63
182 183 2.087857 ATCTCCCCTAGGGCCTCGAG 62.088 65.000 23.84 21.79 43.94 4.04
183 184 2.082836 GATCTCCCCTAGGGCCTCGA 62.083 65.000 23.84 13.14 43.94 4.04
184 185 1.608046 GATCTCCCCTAGGGCCTCG 60.608 68.421 23.84 9.00 43.94 4.63
185 186 0.544120 CTGATCTCCCCTAGGGCCTC 60.544 65.000 23.84 14.96 43.94 4.70
186 187 1.551358 CTGATCTCCCCTAGGGCCT 59.449 63.158 23.84 12.58 43.94 5.19
187 188 1.537643 CCTGATCTCCCCTAGGGCC 60.538 68.421 23.84 8.66 43.94 5.80
188 189 0.834261 GACCTGATCTCCCCTAGGGC 60.834 65.000 23.84 8.95 43.94 5.19
189 190 0.540830 CGACCTGATCTCCCCTAGGG 60.541 65.000 22.25 22.25 46.11 3.53
190 191 0.478942 TCGACCTGATCTCCCCTAGG 59.521 60.000 0.06 0.06 36.39 3.02
191 192 1.611519 GTCGACCTGATCTCCCCTAG 58.388 60.000 3.51 0.00 0.00 3.02
192 193 0.185416 GGTCGACCTGATCTCCCCTA 59.815 60.000 27.64 0.00 0.00 3.53
193 194 1.075896 GGTCGACCTGATCTCCCCT 60.076 63.158 27.64 0.00 0.00 4.79
194 195 1.075896 AGGTCGACCTGATCTCCCC 60.076 63.158 35.89 4.62 46.55 4.81
195 196 4.688770 AGGTCGACCTGATCTCCC 57.311 61.111 35.89 5.46 46.55 4.30
204 205 3.851128 GGCTGCCCTAGGTCGACC 61.851 72.222 27.67 27.67 0.00 4.79
205 206 3.851128 GGGCTGCCCTAGGTCGAC 61.851 72.222 30.42 7.13 41.34 4.20
206 207 2.306715 TATGGGCTGCCCTAGGTCGA 62.307 60.000 35.80 16.46 45.70 4.20
207 208 1.821061 CTATGGGCTGCCCTAGGTCG 61.821 65.000 35.80 15.67 45.70 4.79
208 209 2.062070 CTATGGGCTGCCCTAGGTC 58.938 63.158 35.80 11.26 45.70 3.85
209 210 2.150051 GCTATGGGCTGCCCTAGGT 61.150 63.158 35.80 21.51 45.70 3.08
210 211 2.753029 GCTATGGGCTGCCCTAGG 59.247 66.667 35.80 24.75 45.70 3.02
211 212 2.753029 GGCTATGGGCTGCCCTAG 59.247 66.667 35.80 30.35 45.70 3.02
212 213 3.241530 CGGCTATGGGCTGCCCTA 61.242 66.667 35.80 23.24 45.70 3.53
246 247 3.239253 ACACACCCGGGAGTGACC 61.239 66.667 45.02 0.00 40.34 4.02
247 248 2.030562 CACACACCCGGGAGTGAC 59.969 66.667 45.02 0.00 40.34 3.67
248 249 3.238497 CCACACACCCGGGAGTGA 61.238 66.667 45.02 0.00 40.34 3.41
249 250 4.329545 CCCACACACCCGGGAGTG 62.330 72.222 39.45 39.45 46.34 3.51
253 254 4.212797 AAACCCCACACACCCGGG 62.213 66.667 22.25 22.25 43.05 5.73
254 255 2.596338 GAAACCCCACACACCCGG 60.596 66.667 0.00 0.00 0.00 5.73
255 256 2.975799 CGAAACCCCACACACCCG 60.976 66.667 0.00 0.00 0.00 5.28
256 257 2.596338 CCGAAACCCCACACACCC 60.596 66.667 0.00 0.00 0.00 4.61
257 258 2.596338 CCCGAAACCCCACACACC 60.596 66.667 0.00 0.00 0.00 4.16
258 259 1.895231 GACCCGAAACCCCACACAC 60.895 63.158 0.00 0.00 0.00 3.82
259 260 2.511900 GACCCGAAACCCCACACA 59.488 61.111 0.00 0.00 0.00 3.72
260 261 2.281970 GGACCCGAAACCCCACAC 60.282 66.667 0.00 0.00 0.00 3.82
261 262 2.773053 TGGACCCGAAACCCCACA 60.773 61.111 0.00 0.00 0.00 4.17
262 263 2.281970 GTGGACCCGAAACCCCAC 60.282 66.667 0.00 0.00 41.72 4.61
263 264 1.934459 TTTGTGGACCCGAAACCCCA 61.934 55.000 0.00 0.00 0.00 4.96
264 265 0.756070 TTTTGTGGACCCGAAACCCC 60.756 55.000 0.00 0.00 0.00 4.95
265 266 0.671796 CTTTTGTGGACCCGAAACCC 59.328 55.000 0.00 0.00 0.00 4.11
266 267 0.031585 GCTTTTGTGGACCCGAAACC 59.968 55.000 0.00 0.00 0.00 3.27
267 268 0.741915 TGCTTTTGTGGACCCGAAAC 59.258 50.000 0.00 0.00 0.00 2.78
268 269 1.611491 GATGCTTTTGTGGACCCGAAA 59.389 47.619 0.00 0.00 0.00 3.46
269 270 1.202879 AGATGCTTTTGTGGACCCGAA 60.203 47.619 0.00 0.00 0.00 4.30
270 271 0.400213 AGATGCTTTTGTGGACCCGA 59.600 50.000 0.00 0.00 0.00 5.14
271 272 0.523072 CAGATGCTTTTGTGGACCCG 59.477 55.000 0.00 0.00 0.00 5.28
272 273 0.244721 GCAGATGCTTTTGTGGACCC 59.755 55.000 0.00 0.00 38.21 4.46
273 274 0.244721 GGCAGATGCTTTTGTGGACC 59.755 55.000 4.59 0.00 41.70 4.46
274 275 0.109597 CGGCAGATGCTTTTGTGGAC 60.110 55.000 4.59 0.00 41.70 4.02
275 276 1.243342 CCGGCAGATGCTTTTGTGGA 61.243 55.000 4.59 0.00 41.70 4.02
276 277 1.213537 CCGGCAGATGCTTTTGTGG 59.786 57.895 4.59 0.00 41.70 4.17
277 278 1.444895 GCCGGCAGATGCTTTTGTG 60.445 57.895 24.80 0.00 41.70 3.33
278 279 1.604593 AGCCGGCAGATGCTTTTGT 60.605 52.632 31.54 0.00 41.70 2.83
279 280 1.153901 CAGCCGGCAGATGCTTTTG 60.154 57.895 31.54 11.01 41.70 2.44
280 281 1.589716 GACAGCCGGCAGATGCTTTT 61.590 55.000 31.54 1.55 41.70 2.27
281 282 2.034687 ACAGCCGGCAGATGCTTT 59.965 55.556 31.54 0.76 41.70 3.51
282 283 2.437359 GACAGCCGGCAGATGCTT 60.437 61.111 31.54 3.35 41.70 3.91
283 284 4.479993 GGACAGCCGGCAGATGCT 62.480 66.667 31.54 3.81 41.70 3.79
284 285 4.479993 AGGACAGCCGGCAGATGC 62.480 66.667 31.54 18.44 39.96 3.91
285 286 2.513204 CAGGACAGCCGGCAGATG 60.513 66.667 31.54 21.18 39.96 2.90
291 292 2.279517 GATACGCAGGACAGCCGG 60.280 66.667 0.00 0.00 39.96 6.13
292 293 2.655364 CGATACGCAGGACAGCCG 60.655 66.667 0.00 0.00 39.96 5.52
304 305 4.865761 TGACCGGCAGCGCGATAC 62.866 66.667 12.10 0.00 0.00 2.24
305 306 4.569023 CTGACCGGCAGCGCGATA 62.569 66.667 12.10 0.00 37.90 2.92
309 310 4.521062 AGATCTGACCGGCAGCGC 62.521 66.667 17.80 0.00 44.52 5.92
310 311 2.279120 GAGATCTGACCGGCAGCG 60.279 66.667 17.80 1.01 44.52 5.18
311 312 1.965754 AAGGAGATCTGACCGGCAGC 61.966 60.000 17.80 7.82 44.52 5.25
312 313 0.103937 GAAGGAGATCTGACCGGCAG 59.896 60.000 16.84 16.84 46.31 4.85
313 314 1.667154 CGAAGGAGATCTGACCGGCA 61.667 60.000 0.00 0.00 0.00 5.69
314 315 1.066587 CGAAGGAGATCTGACCGGC 59.933 63.158 0.00 0.00 0.00 6.13
315 316 0.382515 GTCGAAGGAGATCTGACCGG 59.617 60.000 0.00 0.00 0.00 5.28
316 317 0.028242 CGTCGAAGGAGATCTGACCG 59.972 60.000 0.00 0.00 0.00 4.79
317 318 0.248702 GCGTCGAAGGAGATCTGACC 60.249 60.000 0.00 0.00 0.00 4.02
318 319 0.590230 CGCGTCGAAGGAGATCTGAC 60.590 60.000 0.00 0.00 0.00 3.51
319 320 0.743345 TCGCGTCGAAGGAGATCTGA 60.743 55.000 5.77 0.00 31.06 3.27
320 321 0.316607 CTCGCGTCGAAGGAGATCTG 60.317 60.000 5.77 0.00 34.74 2.90
321 322 2.018544 CTCGCGTCGAAGGAGATCT 58.981 57.895 5.77 0.00 34.74 2.75
322 323 1.655959 GCTCGCGTCGAAGGAGATC 60.656 63.158 16.63 0.31 34.74 2.75
323 324 2.115911 AGCTCGCGTCGAAGGAGAT 61.116 57.895 16.63 10.16 34.74 2.75
324 325 2.746671 AGCTCGCGTCGAAGGAGA 60.747 61.111 16.63 6.14 34.74 3.71
325 326 2.578178 CAGCTCGCGTCGAAGGAG 60.578 66.667 5.77 10.79 34.74 3.69
326 327 4.778415 GCAGCTCGCGTCGAAGGA 62.778 66.667 5.77 0.00 34.74 3.36
336 337 3.857854 GTGATGCACCGCAGCTCG 61.858 66.667 5.76 0.00 45.80 5.03
337 338 3.503363 GGTGATGCACCGCAGCTC 61.503 66.667 5.76 1.79 45.80 4.09
345 346 4.760047 ACGCCGAGGGTGATGCAC 62.760 66.667 1.62 0.00 36.58 4.57
346 347 4.015406 AACGCCGAGGGTGATGCA 62.015 61.111 1.62 0.00 36.58 3.96
347 348 3.499737 CAACGCCGAGGGTGATGC 61.500 66.667 1.62 0.00 36.58 3.91
348 349 2.819595 CCAACGCCGAGGGTGATG 60.820 66.667 1.62 0.24 36.07 3.07
349 350 3.000819 TCCAACGCCGAGGGTGAT 61.001 61.111 1.62 0.00 36.58 3.06
350 351 3.691342 CTCCAACGCCGAGGGTGA 61.691 66.667 1.62 0.00 36.58 4.02
351 352 4.760047 CCTCCAACGCCGAGGGTG 62.760 72.222 0.00 0.00 42.85 4.61
355 356 0.317603 CGTATACCTCCAACGCCGAG 60.318 60.000 0.00 0.00 0.00 4.63
356 357 1.727511 CCGTATACCTCCAACGCCGA 61.728 60.000 0.00 0.00 35.36 5.54
357 358 1.299620 CCGTATACCTCCAACGCCG 60.300 63.158 0.00 0.00 35.36 6.46
358 359 0.529119 CACCGTATACCTCCAACGCC 60.529 60.000 0.00 0.00 35.36 5.68
359 360 0.457035 TCACCGTATACCTCCAACGC 59.543 55.000 0.00 0.00 35.36 4.84
360 361 1.532505 CGTCACCGTATACCTCCAACG 60.533 57.143 0.00 0.00 36.42 4.10
361 362 2.199291 CGTCACCGTATACCTCCAAC 57.801 55.000 0.00 0.00 0.00 3.77
373 374 2.917901 CACACGAACACGTCACCG 59.082 61.111 0.00 0.00 38.21 4.94
374 375 2.624264 GCACACGAACACGTCACC 59.376 61.111 0.00 0.00 38.21 4.02
375 376 2.241537 CGCACACGAACACGTCAC 59.758 61.111 0.00 0.00 43.93 3.67
385 386 1.595794 AGTAGGTTTTGTTCGCACACG 59.404 47.619 0.00 0.00 42.01 4.49
386 387 3.685836 AAGTAGGTTTTGTTCGCACAC 57.314 42.857 0.00 0.00 30.32 3.82
387 388 4.260866 GCTAAAGTAGGTTTTGTTCGCACA 60.261 41.667 0.00 0.00 0.00 4.57
388 389 4.024302 AGCTAAAGTAGGTTTTGTTCGCAC 60.024 41.667 0.00 0.00 31.36 5.34
389 390 4.131596 AGCTAAAGTAGGTTTTGTTCGCA 58.868 39.130 0.00 0.00 31.36 5.10
390 391 4.744136 AGCTAAAGTAGGTTTTGTTCGC 57.256 40.909 0.00 0.00 31.36 4.70
399 400 5.778750 TGGTCTAGTCAAAGCTAAAGTAGGT 59.221 40.000 0.00 0.00 38.32 3.08
400 401 6.282199 TGGTCTAGTCAAAGCTAAAGTAGG 57.718 41.667 0.00 0.00 0.00 3.18
401 402 8.603242 TTTTGGTCTAGTCAAAGCTAAAGTAG 57.397 34.615 11.57 0.00 35.81 2.57
402 403 8.967664 TTTTTGGTCTAGTCAAAGCTAAAGTA 57.032 30.769 11.57 0.00 35.81 2.24
452 454 8.602424 TCGGAAATATCAATTATATGACCCTGT 58.398 33.333 0.00 0.00 30.84 4.00
475 477 5.228945 ACATAGGGAATGACCTAAATCGG 57.771 43.478 0.00 0.00 45.69 4.18
526 528 2.223947 GGTGGATTTTCAGGCACGTTTT 60.224 45.455 0.00 0.00 0.00 2.43
529 531 0.893727 GGGTGGATTTTCAGGCACGT 60.894 55.000 0.00 0.00 0.00 4.49
735 752 6.983984 AGAGTCTAAGTAAGAAAAAGTCGCT 58.016 36.000 0.00 0.00 35.47 4.93
736 753 7.085746 AGAGAGTCTAAGTAAGAAAAAGTCGC 58.914 38.462 0.00 0.00 35.47 5.19
769 786 5.899151 GTGTGTGTGTGTTTGTTTGTTTTTC 59.101 36.000 0.00 0.00 0.00 2.29
844 878 4.298626 TGCAGAAGGGAGTATGGATAAGT 58.701 43.478 0.00 0.00 0.00 2.24
944 979 3.197790 CCGGTGCCTTCGATGCTG 61.198 66.667 8.66 0.20 0.00 4.41
974 1015 0.970937 AGGAATTCGTGCTCGGGAGA 60.971 55.000 8.49 0.00 37.69 3.71
1247 1299 5.098893 GCAATTAACCATGCACATACGAAA 58.901 37.500 0.00 0.00 42.12 3.46
1286 1338 9.120538 GATGCAAAATCAGTAGGATTAAAGGTA 57.879 33.333 0.00 0.00 45.46 3.08
1470 1540 6.278363 TGTCGATATGGATCATGCATCATAG 58.722 40.000 0.00 0.00 32.33 2.23
1545 1620 3.531207 TCCTGCAGCGATCCTCCG 61.531 66.667 8.66 0.00 0.00 4.63
1578 1653 3.655481 GCGTAGTGCTTGCCAACT 58.345 55.556 0.00 0.00 41.73 3.16
1722 1797 1.400846 GTTGCATCAGAGATGTGGCAG 59.599 52.381 8.60 0.00 32.31 4.85
1750 1828 5.840243 TGGATTCTTGTAGCCATGAATTG 57.160 39.130 0.00 0.00 42.38 2.32
1932 2010 2.503375 CACGACTCCACGCGGTAC 60.503 66.667 12.47 0.00 36.70 3.34
2028 2106 0.689080 TCTCCACCATCCTCCTGAGC 60.689 60.000 0.00 0.00 0.00 4.26
2166 2244 1.548719 CCGAGGTTGTAGATGTGGTGA 59.451 52.381 0.00 0.00 0.00 4.02
2223 2301 0.657077 CGCACACGTCACCAAACATG 60.657 55.000 0.00 0.00 33.53 3.21
2240 2318 0.719465 CAACACCCACTCGATTACGC 59.281 55.000 0.00 0.00 39.58 4.42
2244 2322 1.238439 CAAGCAACACCCACTCGATT 58.762 50.000 0.00 0.00 0.00 3.34
2253 2331 0.100503 AAGTTCACGCAAGCAACACC 59.899 50.000 0.00 0.00 45.62 4.16
2257 2335 0.248580 CTGCAAGTTCACGCAAGCAA 60.249 50.000 0.00 0.00 45.62 3.91
2258 2336 1.356270 CTGCAAGTTCACGCAAGCA 59.644 52.632 0.00 0.00 45.62 3.91
2259 2337 1.370900 CCTGCAAGTTCACGCAAGC 60.371 57.895 0.00 0.00 45.62 4.01
2260 2338 1.165907 TCCCTGCAAGTTCACGCAAG 61.166 55.000 0.00 0.00 37.76 4.01
2308 2386 0.700564 TGTCCAGGTAGTACGGGTCT 59.299 55.000 8.88 0.00 0.00 3.85
2539 2617 2.224548 GGTGTTGAGGAGGCAGTAGTTT 60.225 50.000 0.00 0.00 0.00 2.66
3053 3131 1.209019 ACCTCGTCGCTTCTACTCCTA 59.791 52.381 0.00 0.00 0.00 2.94
3054 3132 0.035247 ACCTCGTCGCTTCTACTCCT 60.035 55.000 0.00 0.00 0.00 3.69
3055 3133 0.810016 AACCTCGTCGCTTCTACTCC 59.190 55.000 0.00 0.00 0.00 3.85
3056 3134 1.202166 GGAACCTCGTCGCTTCTACTC 60.202 57.143 0.00 0.00 0.00 2.59
3057 3135 0.810016 GGAACCTCGTCGCTTCTACT 59.190 55.000 0.00 0.00 0.00 2.57
3115 3207 1.226717 CCTAGTGTCTTCTCCGCGC 60.227 63.158 0.00 0.00 0.00 6.86
3117 3209 0.458716 GCACCTAGTGTCTTCTCCGC 60.459 60.000 0.00 0.00 35.75 5.54
3118 3210 0.173708 GGCACCTAGTGTCTTCTCCG 59.826 60.000 0.00 0.00 35.05 4.63
3263 3363 7.289310 TCTTAAAGCCCATGATCATGTGATAA 58.711 34.615 29.23 19.33 37.11 1.75
3275 3375 8.339714 CAATTTGCATAAATCTTAAAGCCCATG 58.660 33.333 0.00 0.00 35.50 3.66
3299 3405 5.520632 TCACGTCAAAGAAAACAACAACAA 58.479 33.333 0.00 0.00 0.00 2.83
3306 3412 6.153067 ACAACAATTCACGTCAAAGAAAACA 58.847 32.000 0.00 0.00 0.00 2.83
3324 3430 4.859798 CCTTAGCGACAACAAAAACAACAA 59.140 37.500 0.00 0.00 0.00 2.83
3393 3505 4.370776 TCAGATCCCATACAGGAAAAGGA 58.629 43.478 0.00 0.00 40.04 3.36
3499 3627 1.549203 GGCTCTTTGAATTCTGCCCA 58.451 50.000 7.05 0.00 34.81 5.36
3518 3646 0.795358 GTGAAAAATAACGCGGCCCG 60.795 55.000 12.47 11.48 44.21 6.13
3608 3770 6.092122 CGGCTAGAAATAAAACTGATGTCACA 59.908 38.462 0.00 0.00 0.00 3.58
3610 3772 6.170506 ACGGCTAGAAATAAAACTGATGTCA 58.829 36.000 0.00 0.00 0.00 3.58
3625 3787 5.277825 CACAAACAAATCAAACGGCTAGAA 58.722 37.500 0.00 0.00 0.00 2.10
3628 3790 3.067461 AGCACAAACAAATCAAACGGCTA 59.933 39.130 0.00 0.00 0.00 3.93
3635 3797 7.589221 GTGAAAAACAAAGCACAAACAAATCAA 59.411 29.630 0.00 0.00 0.00 2.57
3636 3798 7.074502 GTGAAAAACAAAGCACAAACAAATCA 58.925 30.769 0.00 0.00 0.00 2.57
3637 3799 6.246125 CGTGAAAAACAAAGCACAAACAAATC 59.754 34.615 0.00 0.00 0.00 2.17
3638 3800 6.076557 CGTGAAAAACAAAGCACAAACAAAT 58.923 32.000 0.00 0.00 0.00 2.32
3639 3801 5.435557 CGTGAAAAACAAAGCACAAACAAA 58.564 33.333 0.00 0.00 0.00 2.83
3640 3802 4.084328 CCGTGAAAAACAAAGCACAAACAA 60.084 37.500 0.00 0.00 0.00 2.83
3641 3803 3.430218 CCGTGAAAAACAAAGCACAAACA 59.570 39.130 0.00 0.00 0.00 2.83
3642 3804 3.430556 ACCGTGAAAAACAAAGCACAAAC 59.569 39.130 0.00 0.00 0.00 2.93
3643 3805 3.654414 ACCGTGAAAAACAAAGCACAAA 58.346 36.364 0.00 0.00 0.00 2.83
3644 3806 3.246619 GACCGTGAAAAACAAAGCACAA 58.753 40.909 0.00 0.00 0.00 3.33
3645 3807 2.729467 CGACCGTGAAAAACAAAGCACA 60.729 45.455 0.00 0.00 0.00 4.57
3646 3808 1.843753 CGACCGTGAAAAACAAAGCAC 59.156 47.619 0.00 0.00 0.00 4.40
3647 3809 1.738350 TCGACCGTGAAAAACAAAGCA 59.262 42.857 0.00 0.00 0.00 3.91
3648 3810 2.223180 ACTCGACCGTGAAAAACAAAGC 60.223 45.455 0.00 0.00 0.00 3.51
3649 3811 3.062909 TCACTCGACCGTGAAAAACAAAG 59.937 43.478 5.11 0.00 40.69 2.77
3650 3812 3.001414 TCACTCGACCGTGAAAAACAAA 58.999 40.909 5.11 0.00 40.69 2.83
3651 3813 2.619147 TCACTCGACCGTGAAAAACAA 58.381 42.857 5.11 0.00 40.69 2.83
3652 3814 2.296831 TCACTCGACCGTGAAAAACA 57.703 45.000 5.11 0.00 40.69 2.83
3653 3815 3.435262 GATCACTCGACCGTGAAAAAC 57.565 47.619 11.07 1.75 46.00 2.43
3742 3942 9.267084 GCCCAACAAGAAAAATAAAAATAGTCA 57.733 29.630 0.00 0.00 0.00 3.41
3753 3953 0.034756 GGCGGCCCAACAAGAAAAAT 59.965 50.000 8.12 0.00 0.00 1.82
3754 3954 1.443828 GGCGGCCCAACAAGAAAAA 59.556 52.632 8.12 0.00 0.00 1.94
3823 4027 9.689976 GCTACCGTATCGATCTAATATACTCTA 57.310 37.037 0.00 0.00 0.00 2.43
3830 4034 5.121811 GGAGGCTACCGTATCGATCTAATA 58.878 45.833 0.00 0.00 0.00 0.98
3838 4042 0.168348 CGATGGAGGCTACCGTATCG 59.832 60.000 3.85 3.85 32.77 2.92
3861 4065 2.027745 ACATGCGAAAGGAGAGTGACAT 60.028 45.455 0.00 0.00 32.19 3.06
3958 4165 3.607741 TCTCTAGTTCCGAGTCGATGTT 58.392 45.455 15.64 0.00 0.00 2.71
3970 4177 2.112190 CACCCCCTCCTTCTCTAGTTC 58.888 57.143 0.00 0.00 0.00 3.01
4009 4217 2.853235 ACACTTGTAACTAGGGCCAC 57.147 50.000 6.18 0.00 0.00 5.01
4027 4235 2.592194 TCAGTTGCGAGTCGATTGTAC 58.408 47.619 18.61 5.82 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.