AutoCloner

Multiple sequence alignment - TraesCS2A01G181000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G181000	chr2A	100.000	2549	0	0	1	2549	140061395	140058847	0.000000e+00	4708.0
1	TraesCS2A01G181000	chr2A	95.923	834	34	0	1716	2549	104884929	104885762	0.000000e+00	1352.0
2	TraesCS2A01G181000	chr2A	95.803	834	35	0	1716	2549	82138775	82139608	0.000000e+00	1347.0
3	TraesCS2A01G181000	chr2A	95.564	834	37	0	1716	2549	139073816	139072983	0.000000e+00	1336.0
4	TraesCS2A01G181000	chr2A	95.564	834	37	0	1716	2549	624650658	624649825	0.000000e+00	1336.0
5	TraesCS2A01G181000	chr5A	89.007	1128	83	24	603	1723	689420242	689419149	0.000000e+00	1358.0
6	TraesCS2A01G181000	chr5A	95.564	834	37	0	1716	2549	325496995	325497828	0.000000e+00	1336.0
7	TraesCS2A01G181000	chr5A	89.749	517	36	9	1	505	689420852	689420341	0.000000e+00	645.0
8	TraesCS2A01G181000	chr5A	91.566	83	6	1	529	610	689420349	689420267	2.070000e-21	113.0
9	TraesCS2A01G181000	chr3A	96.043	834	33	0	1716	2549	521624576	521623743	0.000000e+00	1358.0
10	TraesCS2A01G181000	chr3A	81.412	1431	167	57	318	1699	26045514	26044134	0.000000e+00	1077.0
11	TraesCS2A01G181000	chr6A	95.803	834	35	0	1716	2549	218860373	218861206	0.000000e+00	1347.0
12	TraesCS2A01G181000	chr6A	95.683	834	36	0	1716	2549	135100559	135101392	0.000000e+00	1341.0
13	TraesCS2A01G181000	chr6A	78.061	196	33	10	1523	1713	126917712	126917522	5.760000e-22	115.0
14	TraesCS2A01G181000	chr7A	95.683	834	36	0	1716	2549	610488917	610489750	0.000000e+00	1341.0
15	TraesCS2A01G181000	chr7A	85.915	142	12	6	28	163	660437830	660437691	7.350000e-31	145.0
16	TraesCS2A01G181000	chr3B	87.862	1071	94	20	587	1649	723485043	723484001	0.000000e+00	1225.0
17	TraesCS2A01G181000	chr3B	94.040	151	9	0	1	151	723481612	723481462	1.970000e-56	230.0
18	TraesCS2A01G181000	chr3B	90.909	121	9	2	1	120	723485338	723485219	7.300000e-36	161.0
19	TraesCS2A01G181000	chr3B	89.157	83	8	1	529	610	723485130	723485048	4.490000e-18	102.0
20	TraesCS2A01G181000	chr1B	91.813	513	34	3	1	505	496497397	496497909	0.000000e+00	708.0
21	TraesCS2A01G181000	chr1B	81.236	890	94	28	802	1683	496499730	496500554	0.000000e+00	651.0
22	TraesCS2A01G181000	chr1B	90.991	222	15	5	587	805	496497988	496498207	6.900000e-76	294.0
23	TraesCS2A01G181000	chr1B	85.542	166	22	2	770	934	547215943	547216107	3.370000e-39	172.0
24	TraesCS2A01G181000	chr3D	84.409	186	29	0	1514	1699	501291021	501291206	1.560000e-42	183.0
25	TraesCS2A01G181000	chr3D	90.411	73	6	1	821	892	501290343	501290415	7.510000e-16	95.3
26	TraesCS2A01G181000	chr7D	81.304	230	36	7	1481	1707	28799391	28799166	2.010000e-41	180.0
27	TraesCS2A01G181000	chr7D	83.212	137	19	4	27	163	597996620	597996488	3.440000e-24	122.0
28	TraesCS2A01G181000	chr7D	75.943	212	43	7	1512	1719	463877005	463877212	4.490000e-18	102.0
29	TraesCS2A01G181000	chr5D	77.200	250	49	7	1472	1717	79164028	79164273	3.420000e-29	139.0
30	TraesCS2A01G181000	chr1A	85.211	142	13	6	28	163	232044340	232044201	3.420000e-29	139.0
31	TraesCS2A01G181000	chr4A	82.500	160	16	10	12	163	721010813	721010968	2.060000e-26	130.0
32	TraesCS2A01G181000	chr6B	86.441	118	12	1	821	934	661073912	661074029	2.660000e-25	126.0
33	TraesCS2A01G181000	chr2D	83.582	134	18	4	24	157	362651880	362652009	3.440000e-24	122.0
34	TraesCS2A01G181000	chr4B	77.612	201	40	4	1513	1709	570151033	570151232	1.600000e-22	117.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G181000	chr2A	140058847	140061395	2548	True	4708.000000	4708	100.000000	1	2549	1	chr2A.!!$R2	2548
1	TraesCS2A01G181000	chr2A	104884929	104885762	833	False	1352.000000	1352	95.923000	1716	2549	1	chr2A.!!$F2	833
2	TraesCS2A01G181000	chr2A	82138775	82139608	833	False	1347.000000	1347	95.803000	1716	2549	1	chr2A.!!$F1	833
3	TraesCS2A01G181000	chr2A	139072983	139073816	833	True	1336.000000	1336	95.564000	1716	2549	1	chr2A.!!$R1	833
4	TraesCS2A01G181000	chr2A	624649825	624650658	833	True	1336.000000	1336	95.564000	1716	2549	1	chr2A.!!$R3	833
5	TraesCS2A01G181000	chr5A	325496995	325497828	833	False	1336.000000	1336	95.564000	1716	2549	1	chr5A.!!$F1	833
6	TraesCS2A01G181000	chr5A	689419149	689420852	1703	True	705.333333	1358	90.107333	1	1723	3	chr5A.!!$R1	1722
7	TraesCS2A01G181000	chr3A	521623743	521624576	833	True	1358.000000	1358	96.043000	1716	2549	1	chr3A.!!$R2	833
8	TraesCS2A01G181000	chr3A	26044134	26045514	1380	True	1077.000000	1077	81.412000	318	1699	1	chr3A.!!$R1	1381
9	TraesCS2A01G181000	chr6A	218860373	218861206	833	False	1347.000000	1347	95.803000	1716	2549	1	chr6A.!!$F2	833
10	TraesCS2A01G181000	chr6A	135100559	135101392	833	False	1341.000000	1341	95.683000	1716	2549	1	chr6A.!!$F1	833
11	TraesCS2A01G181000	chr7A	610488917	610489750	833	False	1341.000000	1341	95.683000	1716	2549	1	chr7A.!!$F1	833
12	TraesCS2A01G181000	chr3B	723481462	723485338	3876	True	429.500000	1225	90.492000	1	1649	4	chr3B.!!$R1	1648
13	TraesCS2A01G181000	chr1B	496497397	496500554	3157	False	551.000000	708	88.013333	1	1683	3	chr1B.!!$F2	1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
53	55	0.923358	TCATACCGGGCATTTTCCCT	59.077	50.0	6.32	0.00	44.30	4.20	F
1176	2773	0.040646	TGTGGACACCGGATCTAGGT	59.959	55.0	9.46	7.45	43.97	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1446	3122	0.034186	AATGCATCCGCCTCCTCAAA	60.034	50.0	0.00	0.0	37.32	2.69	R
2231	4389	0.608856	TCCTTGTCGCATGGCAATGT	60.609	50.0	2.31	0.0	36.08	2.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	43	2.289072	CCCCTCTATGTTGCTCATACCG	60.289	54.545	0.00	0.00	37.91	4.02
53	55	0.923358	TCATACCGGGCATTTTCCCT	59.077	50.000	6.32	0.00	44.30	4.20
85	87	9.915629	TCTTAAGTGCTTGTTTTTCTTTTGTAA	57.084	25.926	1.63	0.00	0.00	2.41
205	211	2.679082	GCCTAGGGTGTCTTAGATGGA	58.321	52.381	11.72	0.00	0.00	3.41
255	261	5.126067	TGTAGCTTTCTTATGATCCCTTGC	58.874	41.667	0.00	0.00	0.00	4.01
261	267	3.114606	TCTTATGATCCCTTGCCTCACA	58.885	45.455	0.00	0.00	0.00	3.58
328	340	4.947883	TCTCCTTGTCTCCTCAATTCCTA	58.052	43.478	0.00	0.00	0.00	2.94
404	427	5.607171	CAGGTAGGTAAGAGTTGGGGATATT	59.393	44.000	0.00	0.00	0.00	1.28
447	470	5.301805	CCTTGTTTGTTAGGTCCTGAAATGT	59.698	40.000	0.00	0.00	0.00	2.71
455	479	2.496470	AGGTCCTGAAATGTAGTCCGTC	59.504	50.000	0.00	0.00	0.00	4.79
476	501	2.032620	CCCACTACGCTAAGAGGATGT	58.967	52.381	1.06	0.00	29.40	3.06
487	512	4.260866	GCTAAGAGGATGTCGTAGTGTCTC	60.261	50.000	0.00	0.00	38.95	3.36
528	553	7.877003	TGTGAAACTCTTTTTCAGTGTTGTTA	58.123	30.769	0.00	0.00	38.86	2.41
559	584	9.474920	TTTGTGAGAAATACAATGAACAATTCC	57.525	29.630	0.00	0.00	37.81	3.01
652	709	1.078656	AGAACCCTTCTCTGCTCCTCT	59.921	52.381	0.00	0.00	34.07	3.69
782	840	1.645034	ATGCCGTCATTTCTGTCTCG	58.355	50.000	0.00	0.00	0.00	4.04
850	2434	3.737559	ACCAGGAATCCTAATGTGCAA	57.262	42.857	0.00	0.00	29.64	4.08
852	2436	4.613437	ACCAGGAATCCTAATGTGCAATT	58.387	39.130	0.00	0.00	29.64	2.32
854	2438	5.484998	ACCAGGAATCCTAATGTGCAATTTT	59.515	36.000	0.00	0.00	29.64	1.82
892	2477	9.585099	TTCAATAAAACATTAAGATCATGGTGC	57.415	29.630	0.00	0.00	0.00	5.01
921	2506	7.553402	TGTAGGTAGCAAAAGAAACAACTAACA	59.447	33.333	0.00	0.00	0.00	2.41
954	2539	1.148446	ACCCAGTGTCCTGTAGGTACA	59.852	52.381	0.00	0.00	36.95	2.90
962	2551	1.063792	TCCTGTAGGTACATGGGCGTA	60.064	52.381	0.00	0.00	35.36	4.42
963	2552	1.968493	CCTGTAGGTACATGGGCGTAT	59.032	52.381	0.00	0.00	35.36	3.06
1019	2608	2.878406	ACATGGTGTTCTGCAGTGTAAC	59.122	45.455	14.67	11.54	0.00	2.50
1025	2614	2.224185	TGTTCTGCAGTGTAACGGTGAT	60.224	45.455	14.67	0.00	45.86	3.06
1026	2615	2.078849	TCTGCAGTGTAACGGTGATG	57.921	50.000	14.67	0.00	45.86	3.07
1106	2696	2.742116	GGCGGGGCTGGAAGTATCA	61.742	63.158	0.00	0.00	35.30	2.15
1107	2697	1.451936	GCGGGGCTGGAAGTATCAT	59.548	57.895	0.00	0.00	35.30	2.45
1112	2702	2.553904	GGGGCTGGAAGTATCATGATGG	60.554	54.545	18.72	1.41	35.30	3.51
1170	2760	0.108329	GAACGATGTGGACACCGGAT	60.108	55.000	9.46	0.00	0.00	4.18
1176	2773	0.040646	TGTGGACACCGGATCTAGGT	59.959	55.000	9.46	7.45	43.97	3.08
1240	2840	2.202797	CGAGGACGGCATGGACAG	60.203	66.667	0.00	0.00	35.72	3.51
1246	2846	2.514592	CGGCATGGACAGCGGATT	60.515	61.111	0.00	0.00	34.65	3.01
1370	2972	1.490490	AGGTTTCCTCAAGACAGCACA	59.510	47.619	0.00	0.00	0.00	4.57
1412	3067	4.636435	CAAGGGCCGGTTCGTGGT	62.636	66.667	1.90	0.00	0.00	4.16
1446	3122	3.365820	GTCGATCACGGACGTATTGTTTT	59.634	43.478	0.00	0.00	40.21	2.43
1447	3123	3.989167	TCGATCACGGACGTATTGTTTTT	59.011	39.130	0.00	0.00	40.21	1.94
1462	3138	2.566824	TTTTTGAGGAGGCGGATGC	58.433	52.632	0.00	0.00	41.71	3.91
1463	3139	0.251121	TTTTTGAGGAGGCGGATGCA	60.251	50.000	0.00	0.00	45.35	3.96
1464	3140	0.034186	TTTTGAGGAGGCGGATGCAT	60.034	50.000	0.00	0.00	45.35	3.96
1465	3141	0.034186	TTTGAGGAGGCGGATGCATT	60.034	50.000	0.00	0.00	45.35	3.56
1466	3142	0.749091	TTGAGGAGGCGGATGCATTG	60.749	55.000	0.00	0.00	45.35	2.82
1467	3143	1.153086	GAGGAGGCGGATGCATTGT	60.153	57.895	0.00	0.00	45.35	2.71
1468	3144	0.749454	GAGGAGGCGGATGCATTGTT	60.749	55.000	0.00	0.00	45.35	2.83
1469	3145	0.749454	AGGAGGCGGATGCATTGTTC	60.749	55.000	0.00	0.00	45.35	3.18
1477	3153	3.676873	GCGGATGCATTGTTCAATTCCTT	60.677	43.478	0.00	0.09	42.15	3.36
1478	3154	3.861113	CGGATGCATTGTTCAATTCCTTG	59.139	43.478	0.00	0.00	0.00	3.61
1585	3262	5.963176	TGCAGATGTTTGATGTAATGTGT	57.037	34.783	0.00	0.00	0.00	3.72
1587	3264	5.241285	TGCAGATGTTTGATGTAATGTGTGT	59.759	36.000	0.00	0.00	0.00	3.72
1617	3294	6.540914	GGATGTTATTAAGTGGGTTTGATCGA	59.459	38.462	0.00	0.00	0.00	3.59
1634	3311	0.248289	CGAACGTGGGTGGTTATCCT	59.752	55.000	0.00	0.00	34.23	3.24
1662	3339	1.063070	TTTGTGGGGTGGCTGTAGGA	61.063	55.000	0.00	0.00	0.00	2.94
1665	3343	1.306141	TGGGGTGGCTGTAGGAGAG	60.306	63.158	0.00	0.00	0.00	3.20
1785	3468	4.168101	TGATGACTGTCCTAAAAGGTCCT	58.832	43.478	5.17	0.00	36.53	3.85
1791	3474	5.152934	ACTGTCCTAAAAGGTCCTTAGTCA	58.847	41.667	4.04	1.37	36.53	3.41
1954	3637	4.499183	CGAGTTGAGATAAGCTCCAAGTT	58.501	43.478	0.00	0.00	43.26	2.66
2031	3714	7.749666	ACAACATATGTTCTATGCCCTAAGAT	58.250	34.615	18.25	0.00	40.06	2.40
2046	3729	3.254411	CCTAAGATCTGAGCTGACGCATA	59.746	47.826	0.83	0.00	39.10	3.14
2126	3809	6.098266	GGGTAGTTATAAAGGTAGGTTTCGGA	59.902	42.308	0.00	0.00	0.00	4.55
2297	4511	3.190874	GGCATCACTAGAACGAGAAAGG	58.809	50.000	0.00	0.00	0.00	3.11
2424	6099	0.955428	TCTGCTTGGTGTTCGGCATC	60.955	55.000	0.00	0.00	34.12	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	1.049289	GGGGAATCTACAGCCGTCCT	61.049	60.000	0.00	0.00	0.00	3.85
18	19	2.196742	ATGAGCAACATAGAGGGGGA	57.803	50.000	0.00	0.00	37.46	4.81
53	55	4.706842	AAACAAGCACTTAAGAGGGAGA	57.293	40.909	10.09	0.00	0.00	3.71
104	106	6.475727	ACTGTTGCTCATATCGTGTATTGTAC	59.524	38.462	0.00	0.00	0.00	2.90
109	111	5.419542	ACAACTGTTGCTCATATCGTGTAT	58.580	37.500	19.82	0.00	0.00	2.29
115	117	8.078596	AGAAGAAAAACAACTGTTGCTCATATC	58.921	33.333	19.82	10.90	38.44	1.63
152	154	6.432783	CCTGGTTTGTCCATCTAATTTACACA	59.567	38.462	0.00	0.00	46.12	3.72
153	155	6.625081	GCCTGGTTTGTCCATCTAATTTACAC	60.625	42.308	0.00	0.00	46.12	2.90
179	181	4.827789	TCTAAGACACCCTAGGCCATATT	58.172	43.478	5.01	0.00	0.00	1.28
188	194	3.031736	GCACTCCATCTAAGACACCCTA	58.968	50.000	0.00	0.00	0.00	3.53
189	195	1.834263	GCACTCCATCTAAGACACCCT	59.166	52.381	0.00	0.00	0.00	4.34
205	211	5.046304	TGCTATTCTAAGTGGAAAGAGCACT	60.046	40.000	11.10	0.00	40.26	4.40
328	340	2.731572	CAGGTCAAAAGGCAGATCCAT	58.268	47.619	0.00	0.00	37.29	3.41
368	381	2.748388	ACCTACCTGGACCATGTAGAC	58.252	52.381	28.81	0.00	35.58	2.59
421	444	4.993705	TCAGGACCTAACAAACAAGGAT	57.006	40.909	0.00	0.00	36.66	3.24
447	470	1.750399	GCGTAGTGGGGACGGACTA	60.750	63.158	0.00	0.00	40.66	2.59
455	479	1.341531	CATCCTCTTAGCGTAGTGGGG	59.658	57.143	8.66	0.00	31.28	4.96
476	501	2.853235	TCACTCAGGAGACACTACGA	57.147	50.000	2.79	0.00	0.00	3.43
487	512	7.605691	AGAGTTTCACAAATAGATTCACTCAGG	59.394	37.037	0.00	0.00	32.25	3.86
559	584	1.665679	ACAAACTGAGTTGCTGACGTG	59.334	47.619	0.00	0.00	31.29	4.49
652	709	3.569827	TCCACCTCTGGACCTCAAA	57.430	52.632	0.00	0.00	42.15	2.69
677	734	4.062293	TCGGATTCGACAAACAAAGTGAT	58.938	39.130	0.00	0.00	40.88	3.06
708	765	1.926426	AATAGCCCTGGCACCTCCAC	61.926	60.000	11.38	0.00	44.88	4.02
719	776	6.252995	TGTTTCTACCATTCAAAATAGCCCT	58.747	36.000	0.00	0.00	0.00	5.19
782	840	1.080569	CTGCAACAATGGGGCGAAC	60.081	57.895	0.00	0.00	0.00	3.95
892	2477	4.394729	TGTTTCTTTTGCTACCTACAGGG	58.605	43.478	0.00	0.00	40.27	4.45
921	2506	4.412528	GGACACTGGGTATTAGGATTCCTT	59.587	45.833	11.25	0.00	34.61	3.36
954	2539	3.211045	GACACCATGTAAATACGCCCAT	58.789	45.455	0.00	0.00	0.00	4.00
962	2551	7.432148	TGTATCTACAGGACACCATGTAAAT	57.568	36.000	0.00	0.00	31.81	1.40
963	2552	6.860790	TGTATCTACAGGACACCATGTAAA	57.139	37.500	0.00	0.00	31.81	2.01
1019	2608	8.028938	AGAACAAAATAAAGGAAATCATCACCG	58.971	33.333	0.00	0.00	0.00	4.94
1059	2648	6.646240	GCACAGGTTACATCATTTCAATTTGT	59.354	34.615	0.00	0.00	0.00	2.83
1170	2760	3.449227	CCGGCGTGCTGACCTAGA	61.449	66.667	6.01	0.00	0.00	2.43
1240	2840	2.485122	CGACTTGCCCAAATCCGC	59.515	61.111	0.00	0.00	0.00	5.54
1402	3057	2.357034	CCACCAGACCACGAACCG	60.357	66.667	0.00	0.00	0.00	4.44
1426	3081	3.984018	AAAACAATACGTCCGTGATCG	57.016	42.857	1.98	0.00	0.00	3.69
1446	3122	0.034186	AATGCATCCGCCTCCTCAAA	60.034	50.000	0.00	0.00	37.32	2.69
1447	3123	0.749091	CAATGCATCCGCCTCCTCAA	60.749	55.000	0.00	0.00	37.32	3.02
1448	3124	1.153107	CAATGCATCCGCCTCCTCA	60.153	57.895	0.00	0.00	37.32	3.86
1449	3125	0.749454	AACAATGCATCCGCCTCCTC	60.749	55.000	0.00	0.00	37.32	3.71
1450	3126	0.749454	GAACAATGCATCCGCCTCCT	60.749	55.000	0.00	0.00	37.32	3.69
1451	3127	1.031571	TGAACAATGCATCCGCCTCC	61.032	55.000	0.00	0.00	37.32	4.30
1452	3128	0.810648	TTGAACAATGCATCCGCCTC	59.189	50.000	0.00	0.00	37.32	4.70
1453	3129	1.477553	ATTGAACAATGCATCCGCCT	58.522	45.000	0.00	0.00	37.32	5.52
1454	3130	2.195922	GAATTGAACAATGCATCCGCC	58.804	47.619	0.00	0.00	37.32	6.13
1455	3131	2.159198	AGGAATTGAACAATGCATCCGC	60.159	45.455	0.00	0.00	32.91	5.54
1456	3132	3.788333	AGGAATTGAACAATGCATCCG	57.212	42.857	0.00	0.00	32.91	4.18
1457	3133	4.628333	CACAAGGAATTGAACAATGCATCC	59.372	41.667	0.00	7.87	0.00	3.51
1458	3134	4.628333	CCACAAGGAATTGAACAATGCATC	59.372	41.667	0.00	0.00	36.89	3.91
1459	3135	4.283978	TCCACAAGGAATTGAACAATGCAT	59.716	37.500	7.66	0.00	42.23	3.96
1460	3136	3.640498	TCCACAAGGAATTGAACAATGCA	59.360	39.130	7.66	0.00	42.23	3.96
1461	3137	4.240096	CTCCACAAGGAATTGAACAATGC	58.760	43.478	0.69	0.00	45.19	3.56
1477	3153	1.613317	CCCACGATGCTACCTCCACA	61.613	60.000	0.00	0.00	0.00	4.17
1478	3154	1.144057	CCCACGATGCTACCTCCAC	59.856	63.158	0.00	0.00	0.00	4.02
1541	3218	7.877003	TGCAAATTAGATCAACGGTTAAGAAA	58.123	30.769	0.00	0.00	0.00	2.52
1546	3223	6.597672	ACATCTGCAAATTAGATCAACGGTTA	59.402	34.615	0.00	0.00	32.75	2.85
1559	3236	7.874016	ACACATTACATCAAACATCTGCAAATT	59.126	29.630	0.00	0.00	0.00	1.82
1581	3258	5.767665	ACTTAATAACATCCAAGCACACACA	59.232	36.000	0.00	0.00	0.00	3.72
1585	3262	4.704540	CCCACTTAATAACATCCAAGCACA	59.295	41.667	0.00	0.00	0.00	4.57
1587	3264	4.929479	ACCCACTTAATAACATCCAAGCA	58.071	39.130	0.00	0.00	0.00	3.91
1617	3294	1.061546	ACAGGATAACCACCCACGTT	58.938	50.000	0.00	0.00	38.94	3.99
1634	3311	1.408961	CCACCCCACAAAGTACACACA	60.409	52.381	0.00	0.00	0.00	3.72
1709	3392	7.228906	ACGTACTTGCTGATACACATCTATACT	59.771	37.037	0.00	0.00	31.93	2.12
1711	3394	7.227910	TCACGTACTTGCTGATACACATCTATA	59.772	37.037	0.00	0.00	31.93	1.31
1712	3395	6.039382	TCACGTACTTGCTGATACACATCTAT	59.961	38.462	0.00	0.00	31.93	1.98
1713	3396	5.355910	TCACGTACTTGCTGATACACATCTA	59.644	40.000	0.00	0.00	31.93	1.98
1714	3397	4.157840	TCACGTACTTGCTGATACACATCT	59.842	41.667	0.00	0.00	31.93	2.90
1785	3468	2.173782	TCCACACAGCCCTTTTGACTAA	59.826	45.455	0.00	0.00	0.00	2.24
1791	3474	2.193536	GCGTCCACACAGCCCTTTT	61.194	57.895	0.00	0.00	0.00	2.27
1954	3637	2.832129	GTCTCATAGTTGGGTCTGTCCA	59.168	50.000	0.00	0.00	38.11	4.02
2031	3714	2.224314	CGAGTATATGCGTCAGCTCAGA	59.776	50.000	0.00	0.00	45.42	3.27
2046	3729	2.454336	TCTGTCACCATCCCGAGTAT	57.546	50.000	0.00	0.00	0.00	2.12
2066	3749	2.117206	TGGTCGGCCCAAAGCAAT	59.883	55.556	2.12	0.00	46.50	3.56
2126	3809	1.547372	GCAGCATGGTTCTGGACAAAT	59.453	47.619	0.00	0.00	35.86	2.32
2231	4389	0.608856	TCCTTGTCGCATGGCAATGT	60.609	50.000	2.31	0.00	36.08	2.71
2235	4393	1.948834	CATAATCCTTGTCGCATGGCA	59.051	47.619	0.00	0.00	0.00	4.92
2297	4511	1.376812	CCTTGTGCTAACCCGACCC	60.377	63.158	0.00	0.00	0.00	4.46
2424	6099	2.134287	TAGCGGCCTCTAGCAAGGG	61.134	63.158	0.00	0.00	46.50	3.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.