Multiple sequence alignment - TraesCS2A01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G180200 chr2A 100.000 4816 0 0 1 4816 138920006 138915191 0.000000e+00 8894
1 TraesCS2A01G180200 chr2A 83.799 179 19 8 4106 4282 773174326 773174496 1.390000e-35 161
2 TraesCS2A01G180200 chr2B 93.748 2527 103 26 1816 4304 186285016 186287525 0.000000e+00 3740
3 TraesCS2A01G180200 chr2B 91.197 852 49 9 987 1825 186284050 186284888 0.000000e+00 1134
4 TraesCS2A01G180200 chr2B 84.746 354 19 10 641 986 186283551 186283877 6.010000e-84 322
5 TraesCS2A01G180200 chr2B 92.157 153 11 1 437 588 120234214 120234062 1.050000e-51 215
6 TraesCS2A01G180200 chr2D 94.384 1923 71 17 2196 4108 132067029 132065134 0.000000e+00 2918
7 TraesCS2A01G180200 chr2D 92.686 1381 73 16 790 2160 132068393 132067031 0.000000e+00 1965
8 TraesCS2A01G180200 chr2D 91.503 153 12 1 437 588 134535685 134535837 4.880000e-50 209
9 TraesCS2A01G180200 chr5D 94.828 290 14 1 4528 4816 538150550 538150261 7.350000e-123 451
10 TraesCS2A01G180200 chr5D 90.870 230 13 3 4304 4531 538150961 538150738 7.830000e-78 302
11 TraesCS2A01G180200 chr5D 90.850 153 13 1 437 588 517961252 517961100 2.270000e-48 204
12 TraesCS2A01G180200 chr5D 84.058 207 24 6 4106 4304 301139292 301139087 1.770000e-44 191
13 TraesCS2A01G180200 chrUn 95.620 274 10 2 4 277 470249520 470249791 5.720000e-119 438
14 TraesCS2A01G180200 chr1A 76.165 558 81 32 2656 3194 575594324 575593800 3.720000e-61 246
15 TraesCS2A01G180200 chr1A 85.204 196 22 5 4113 4303 139488547 139488740 1.370000e-45 195
16 TraesCS2A01G180200 chr1A 84.043 188 15 6 3278 3464 575593774 575593601 2.980000e-37 167
17 TraesCS2A01G180200 chr4D 94.118 153 8 1 437 588 395403314 395403162 1.040000e-56 231
18 TraesCS2A01G180200 chr6B 92.617 149 10 1 441 588 390039484 390039336 3.780000e-51 213
19 TraesCS2A01G180200 chr6B 82.609 207 28 5 4106 4304 80138739 80138945 4.950000e-40 176
20 TraesCS2A01G180200 chr7D 91.503 153 12 1 437 588 594209315 594209163 4.880000e-50 209
21 TraesCS2A01G180200 chr7B 91.946 149 11 1 441 588 427686143 427686291 1.760000e-49 207
22 TraesCS2A01G180200 chr4B 91.447 152 12 1 438 588 302845509 302845660 1.760000e-49 207
23 TraesCS2A01G180200 chr1D 76.056 497 64 31 2713 3194 479227734 479227278 1.760000e-49 207
24 TraesCS2A01G180200 chr1D 84.951 206 22 6 4106 4302 33430057 33430262 2.940000e-47 200
25 TraesCS2A01G180200 chr1D 84.127 189 16 5 3276 3464 479227254 479227080 2.300000e-38 171
26 TraesCS2A01G180200 chr6D 90.909 154 12 1 437 588 108674066 108673913 6.320000e-49 206
27 TraesCS2A01G180200 chr6D 85.165 182 22 2 4106 4282 338399561 338399742 1.060000e-41 182
28 TraesCS2A01G180200 chr5A 83.415 205 27 4 4106 4303 398583448 398583652 2.960000e-42 183
29 TraesCS2A01G180200 chr7A 84.153 183 22 5 4112 4289 712786573 712786393 2.300000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G180200 chr2A 138915191 138920006 4815 True 8894.0 8894 100.000 1 4816 1 chr2A.!!$R1 4815
1 TraesCS2A01G180200 chr2B 186283551 186287525 3974 False 1732.0 3740 89.897 641 4304 3 chr2B.!!$F1 3663
2 TraesCS2A01G180200 chr2D 132065134 132068393 3259 True 2441.5 2918 93.535 790 4108 2 chr2D.!!$R1 3318
3 TraesCS2A01G180200 chr5D 538150261 538150961 700 True 376.5 451 92.849 4304 4816 2 chr5D.!!$R3 512
4 TraesCS2A01G180200 chr1A 575593601 575594324 723 True 206.5 246 80.104 2656 3464 2 chr1A.!!$R1 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.032815 TCAATAATCGATGCGGCCGA 59.967 50.0 33.48 15.19 40.53 5.54 F
308 309 0.036294 GGAAAGCTAAGTCTGCGGGT 60.036 55.0 0.00 0.00 35.28 5.28 F
359 360 0.109153 CTGGGCTGGCTACATATGCA 59.891 55.0 1.58 0.00 0.00 3.96 F
539 540 0.180406 AACTCGGTCAAACCTGCACT 59.820 50.0 0.00 0.00 35.66 4.40 F
540 541 0.249911 ACTCGGTCAAACCTGCACTC 60.250 55.0 0.00 0.00 35.66 3.51 F
635 636 0.394352 GGTTCGGGAGTGATTGCCAT 60.394 55.0 0.00 0.00 37.05 4.40 F
639 640 0.947244 CGGGAGTGATTGCCATAAGC 59.053 55.0 0.00 0.00 37.05 3.09 F
1983 2314 0.992802 GATTTGTCGTCAGGTCTCGC 59.007 55.0 0.00 0.00 0.00 5.03 F
2872 3244 0.183971 TTTTTGGGCCTCGGAGAACA 59.816 50.0 6.58 0.00 34.09 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1601 0.597568 TGCCGCAAAATCCAGTTCAG 59.402 50.000 0.00 0.00 0.00 3.02 R
1416 1602 1.035923 TTGCCGCAAAATCCAGTTCA 58.964 45.000 2.50 0.00 0.00 3.18 R
1427 1613 1.146637 GCACAATCAATTTGCCGCAA 58.853 45.000 0.38 0.38 39.03 4.85 R
1963 2294 1.402984 GCGAGACCTGACGACAAATCT 60.403 52.381 0.00 0.00 0.00 2.40 R
2233 2580 1.547372 TCTTCGACTAAAGGGGTTCCG 59.453 52.381 0.00 0.00 38.33 4.30 R
2271 2626 3.568007 GGCTTTGGTGTGTGAATGACTAA 59.432 43.478 0.00 0.00 0.00 2.24 R
2314 2675 8.825667 AAATTTCATGTACAATTGGTTGGTAC 57.174 30.769 10.83 3.45 39.70 3.34 R
3226 3617 0.032267 GGCCTCCGGAAGAGAATACG 59.968 60.000 5.23 0.00 46.50 3.06 R
4458 4860 0.112218 TGCTGGCCTGGTACACATTT 59.888 50.000 12.06 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.149148 GGCATAGCCTAAGCGTTAGC 58.851 55.000 0.00 0.00 46.69 3.09
39 40 1.540363 GGCATAGCCTAAGCGTTAGCA 60.540 52.381 0.00 0.00 46.69 3.49
40 41 3.063383 GGCATAGCCTAAGCGTTAGCAA 61.063 50.000 0.00 0.00 46.69 3.91
41 42 4.360431 GGCATAGCCTAAGCGTTAGCAAT 61.360 47.826 0.00 0.00 46.69 3.56
42 43 6.141915 GGCATAGCCTAAGCGTTAGCAATC 62.142 50.000 0.00 0.00 46.69 2.67
51 52 3.174799 GCGTTAGCAATCCATCGATTC 57.825 47.619 0.00 0.00 44.35 2.52
52 53 2.543848 GCGTTAGCAATCCATCGATTCA 59.456 45.455 0.00 0.00 44.35 2.57
53 54 3.002246 GCGTTAGCAATCCATCGATTCAA 59.998 43.478 0.00 0.00 44.35 2.69
54 55 4.319766 GCGTTAGCAATCCATCGATTCAAT 60.320 41.667 0.00 0.00 44.35 2.57
55 56 5.107104 GCGTTAGCAATCCATCGATTCAATA 60.107 40.000 0.00 0.00 44.35 1.90
56 57 6.565811 GCGTTAGCAATCCATCGATTCAATAA 60.566 38.462 0.00 0.00 44.35 1.40
57 58 7.521529 CGTTAGCAATCCATCGATTCAATAAT 58.478 34.615 0.00 0.00 36.54 1.28
58 59 7.689812 CGTTAGCAATCCATCGATTCAATAATC 59.310 37.037 0.00 0.00 36.54 1.75
67 68 3.122937 GATTCAATAATCGATGCGGCC 57.877 47.619 0.00 0.00 32.62 6.13
68 69 0.865111 TTCAATAATCGATGCGGCCG 59.135 50.000 24.05 24.05 0.00 6.13
69 70 0.032815 TCAATAATCGATGCGGCCGA 59.967 50.000 33.48 15.19 40.53 5.54
71 72 2.094442 TCAATAATCGATGCGGCCGATA 60.094 45.455 33.48 18.14 44.85 2.92
72 73 1.922570 ATAATCGATGCGGCCGATAC 58.077 50.000 33.48 17.30 44.85 2.24
73 74 0.599060 TAATCGATGCGGCCGATACA 59.401 50.000 33.48 18.89 44.85 2.29
74 75 0.249699 AATCGATGCGGCCGATACAA 60.250 50.000 33.48 11.25 44.85 2.41
75 76 0.249699 ATCGATGCGGCCGATACAAA 60.250 50.000 33.48 9.38 43.93 2.83
76 77 1.149361 TCGATGCGGCCGATACAAAC 61.149 55.000 33.48 9.92 0.00 2.93
77 78 1.425267 CGATGCGGCCGATACAAACA 61.425 55.000 33.48 16.30 0.00 2.83
78 79 0.304705 GATGCGGCCGATACAAACAG 59.695 55.000 33.48 0.00 0.00 3.16
79 80 0.107897 ATGCGGCCGATACAAACAGA 60.108 50.000 33.48 0.00 0.00 3.41
80 81 0.320858 TGCGGCCGATACAAACAGAA 60.321 50.000 33.48 0.00 0.00 3.02
81 82 0.800012 GCGGCCGATACAAACAGAAA 59.200 50.000 33.48 0.00 0.00 2.52
82 83 1.400494 GCGGCCGATACAAACAGAAAT 59.600 47.619 33.48 0.00 0.00 2.17
83 84 2.538939 GCGGCCGATACAAACAGAAATC 60.539 50.000 33.48 0.00 0.00 2.17
84 85 2.285602 CGGCCGATACAAACAGAAATCG 60.286 50.000 24.07 0.00 40.60 3.34
85 86 2.538939 GGCCGATACAAACAGAAATCGC 60.539 50.000 0.00 0.00 39.81 4.58
86 87 2.351726 GCCGATACAAACAGAAATCGCT 59.648 45.455 0.00 0.00 39.81 4.93
87 88 3.554324 GCCGATACAAACAGAAATCGCTA 59.446 43.478 0.00 0.00 39.81 4.26
88 89 4.318121 GCCGATACAAACAGAAATCGCTAG 60.318 45.833 0.00 0.00 39.81 3.42
89 90 5.041287 CCGATACAAACAGAAATCGCTAGA 58.959 41.667 0.00 0.00 39.81 2.43
90 91 5.692204 CCGATACAAACAGAAATCGCTAGAT 59.308 40.000 0.00 0.00 39.81 1.98
91 92 6.346120 CCGATACAAACAGAAATCGCTAGATG 60.346 42.308 0.00 0.00 39.81 2.90
92 93 6.346120 CGATACAAACAGAAATCGCTAGATGG 60.346 42.308 0.00 0.00 37.14 3.51
93 94 3.941483 ACAAACAGAAATCGCTAGATGGG 59.059 43.478 0.00 0.00 37.14 4.00
94 95 2.918712 ACAGAAATCGCTAGATGGGG 57.081 50.000 0.00 0.00 37.14 4.96
95 96 1.417890 ACAGAAATCGCTAGATGGGGG 59.582 52.381 0.00 0.00 37.14 5.40
96 97 0.398318 AGAAATCGCTAGATGGGGGC 59.602 55.000 0.00 0.00 37.14 5.80
101 102 4.937431 GCTAGATGGGGGCGTGCC 62.937 72.222 1.16 1.16 0.00 5.01
102 103 4.609018 CTAGATGGGGGCGTGCCG 62.609 72.222 4.53 0.00 36.85 5.69
113 114 2.499205 CGTGCCGGCTTGGAGATA 59.501 61.111 29.70 0.07 42.00 1.98
114 115 1.069765 CGTGCCGGCTTGGAGATAT 59.930 57.895 29.70 0.00 42.00 1.63
115 116 1.224069 CGTGCCGGCTTGGAGATATG 61.224 60.000 29.70 5.92 42.00 1.78
116 117 0.886490 GTGCCGGCTTGGAGATATGG 60.886 60.000 29.70 0.00 42.00 2.74
117 118 1.053835 TGCCGGCTTGGAGATATGGA 61.054 55.000 29.70 0.00 42.00 3.41
118 119 0.108585 GCCGGCTTGGAGATATGGAA 59.891 55.000 22.15 0.00 42.00 3.53
119 120 1.271597 GCCGGCTTGGAGATATGGAAT 60.272 52.381 22.15 0.00 42.00 3.01
120 121 2.027192 GCCGGCTTGGAGATATGGAATA 60.027 50.000 22.15 0.00 42.00 1.75
121 122 3.600388 CCGGCTTGGAGATATGGAATAC 58.400 50.000 0.00 0.00 42.00 1.89
122 123 3.600388 CGGCTTGGAGATATGGAATACC 58.400 50.000 0.00 0.00 0.00 2.73
123 124 3.600388 GGCTTGGAGATATGGAATACCG 58.400 50.000 0.00 0.00 39.42 4.02
124 125 3.260884 GGCTTGGAGATATGGAATACCGA 59.739 47.826 0.00 0.00 39.42 4.69
125 126 4.080863 GGCTTGGAGATATGGAATACCGAT 60.081 45.833 0.00 0.00 39.42 4.18
126 127 5.112686 GCTTGGAGATATGGAATACCGATC 58.887 45.833 0.00 0.00 39.42 3.69
127 128 5.105146 GCTTGGAGATATGGAATACCGATCT 60.105 44.000 0.00 0.00 41.28 2.75
128 129 6.531503 TTGGAGATATGGAATACCGATCTC 57.468 41.667 16.09 16.09 46.41 2.75
134 135 9.442047 GAGATATGGAATACCGATCTCAATTTT 57.558 33.333 17.96 0.00 46.39 1.82
135 136 9.224267 AGATATGGAATACCGATCTCAATTTTG 57.776 33.333 0.00 0.00 37.06 2.44
136 137 9.219603 GATATGGAATACCGATCTCAATTTTGA 57.780 33.333 0.00 0.00 39.42 2.69
137 138 7.880160 ATGGAATACCGATCTCAATTTTGAA 57.120 32.000 0.00 0.00 36.41 2.69
138 139 7.320443 TGGAATACCGATCTCAATTTTGAAG 57.680 36.000 0.00 0.00 36.41 3.02
139 140 6.318648 TGGAATACCGATCTCAATTTTGAAGG 59.681 38.462 0.00 0.00 36.41 3.46
140 141 6.238759 GGAATACCGATCTCAATTTTGAAGGG 60.239 42.308 0.00 0.00 36.64 3.95
141 142 4.301072 ACCGATCTCAATTTTGAAGGGA 57.699 40.909 0.00 0.00 36.64 4.20
142 143 4.265073 ACCGATCTCAATTTTGAAGGGAG 58.735 43.478 0.00 0.00 36.64 4.30
143 144 4.019321 ACCGATCTCAATTTTGAAGGGAGA 60.019 41.667 0.00 0.00 38.80 3.71
144 145 4.943705 CCGATCTCAATTTTGAAGGGAGAA 59.056 41.667 0.00 0.00 38.05 2.87
145 146 5.591877 CCGATCTCAATTTTGAAGGGAGAAT 59.408 40.000 0.00 0.00 38.05 2.40
146 147 6.459298 CCGATCTCAATTTTGAAGGGAGAATG 60.459 42.308 0.00 0.00 38.05 2.67
147 148 6.459298 CGATCTCAATTTTGAAGGGAGAATGG 60.459 42.308 0.00 0.00 38.05 3.16
148 149 5.018809 TCTCAATTTTGAAGGGAGAATGGG 58.981 41.667 0.00 0.00 36.64 4.00
149 150 3.515104 TCAATTTTGAAGGGAGAATGGGC 59.485 43.478 0.00 0.00 33.55 5.36
150 151 2.999185 TTTTGAAGGGAGAATGGGCT 57.001 45.000 0.00 0.00 0.00 5.19
151 152 4.608170 ATTTTGAAGGGAGAATGGGCTA 57.392 40.909 0.00 0.00 0.00 3.93
152 153 3.366052 TTTGAAGGGAGAATGGGCTAC 57.634 47.619 0.00 0.00 0.00 3.58
153 154 1.965414 TGAAGGGAGAATGGGCTACA 58.035 50.000 0.00 0.00 0.00 2.74
154 155 2.492025 TGAAGGGAGAATGGGCTACAT 58.508 47.619 0.00 0.00 43.07 2.29
155 156 2.439507 TGAAGGGAGAATGGGCTACATC 59.560 50.000 0.00 0.00 39.40 3.06
156 157 2.503869 AGGGAGAATGGGCTACATCT 57.496 50.000 0.00 0.00 39.40 2.90
157 158 2.053244 AGGGAGAATGGGCTACATCTG 58.947 52.381 0.00 0.00 39.40 2.90
158 159 1.771255 GGGAGAATGGGCTACATCTGT 59.229 52.381 0.00 0.00 39.40 3.41
159 160 2.972713 GGGAGAATGGGCTACATCTGTA 59.027 50.000 0.00 0.00 39.40 2.74
176 177 5.130705 TCTGTAGATGAGGACATACACCT 57.869 43.478 0.00 0.00 40.80 4.00
177 178 4.889995 TCTGTAGATGAGGACATACACCTG 59.110 45.833 0.00 0.00 37.93 4.00
178 179 3.384789 TGTAGATGAGGACATACACCTGC 59.615 47.826 0.00 0.00 37.93 4.85
179 180 2.470990 AGATGAGGACATACACCTGCA 58.529 47.619 0.00 0.00 37.93 4.41
180 181 2.433604 AGATGAGGACATACACCTGCAG 59.566 50.000 6.78 6.78 37.93 4.41
181 182 1.937191 TGAGGACATACACCTGCAGA 58.063 50.000 17.39 0.00 37.93 4.26
182 183 2.470990 TGAGGACATACACCTGCAGAT 58.529 47.619 17.39 0.00 37.93 2.90
183 184 2.432146 TGAGGACATACACCTGCAGATC 59.568 50.000 17.39 0.76 37.93 2.75
184 185 1.765314 AGGACATACACCTGCAGATCC 59.235 52.381 17.39 9.82 36.30 3.36
185 186 1.486310 GGACATACACCTGCAGATCCA 59.514 52.381 17.39 0.00 0.00 3.41
186 187 2.555199 GACATACACCTGCAGATCCAC 58.445 52.381 17.39 0.00 0.00 4.02
187 188 2.169352 GACATACACCTGCAGATCCACT 59.831 50.000 17.39 0.00 0.00 4.00
188 189 3.374764 ACATACACCTGCAGATCCACTA 58.625 45.455 17.39 0.00 0.00 2.74
189 190 3.774766 ACATACACCTGCAGATCCACTAA 59.225 43.478 17.39 0.00 0.00 2.24
190 191 4.410228 ACATACACCTGCAGATCCACTAAT 59.590 41.667 17.39 0.00 0.00 1.73
191 192 5.104360 ACATACACCTGCAGATCCACTAATT 60.104 40.000 17.39 0.00 0.00 1.40
192 193 3.614092 ACACCTGCAGATCCACTAATTG 58.386 45.455 17.39 0.00 0.00 2.32
193 194 3.264193 ACACCTGCAGATCCACTAATTGA 59.736 43.478 17.39 0.00 0.00 2.57
194 195 3.875727 CACCTGCAGATCCACTAATTGAG 59.124 47.826 17.39 0.00 0.00 3.02
195 196 3.118112 ACCTGCAGATCCACTAATTGAGG 60.118 47.826 17.39 0.00 0.00 3.86
196 197 3.135348 CCTGCAGATCCACTAATTGAGGA 59.865 47.826 17.39 0.00 39.67 3.71
197 198 4.378774 CTGCAGATCCACTAATTGAGGAG 58.621 47.826 8.42 0.00 38.77 3.69
198 199 3.776969 TGCAGATCCACTAATTGAGGAGT 59.223 43.478 0.00 0.00 38.77 3.85
199 200 4.962362 TGCAGATCCACTAATTGAGGAGTA 59.038 41.667 0.00 0.00 38.77 2.59
200 201 5.069648 TGCAGATCCACTAATTGAGGAGTAG 59.930 44.000 0.00 0.00 38.77 2.57
201 202 5.537188 CAGATCCACTAATTGAGGAGTAGC 58.463 45.833 0.00 0.00 38.77 3.58
202 203 4.591072 AGATCCACTAATTGAGGAGTAGCC 59.409 45.833 0.00 0.00 38.77 3.93
203 204 3.719871 TCCACTAATTGAGGAGTAGCCA 58.280 45.455 0.00 0.00 40.02 4.75
204 205 3.451178 TCCACTAATTGAGGAGTAGCCAC 59.549 47.826 0.00 0.00 40.02 5.01
205 206 3.197766 CCACTAATTGAGGAGTAGCCACA 59.802 47.826 0.00 0.00 40.02 4.17
211 212 3.398318 TGAGGAGTAGCCACAATAGGA 57.602 47.619 0.00 0.00 40.02 2.94
212 213 3.300388 TGAGGAGTAGCCACAATAGGAG 58.700 50.000 0.00 0.00 40.02 3.69
213 214 3.052869 TGAGGAGTAGCCACAATAGGAGA 60.053 47.826 0.00 0.00 40.02 3.71
214 215 3.961408 GAGGAGTAGCCACAATAGGAGAA 59.039 47.826 0.00 0.00 40.02 2.87
215 216 3.964031 AGGAGTAGCCACAATAGGAGAAG 59.036 47.826 0.00 0.00 40.02 2.85
216 217 3.070302 GGAGTAGCCACAATAGGAGAAGG 59.930 52.174 0.00 0.00 36.34 3.46
217 218 3.041946 AGTAGCCACAATAGGAGAAGGG 58.958 50.000 0.00 0.00 0.00 3.95
218 219 2.270434 AGCCACAATAGGAGAAGGGA 57.730 50.000 0.00 0.00 0.00 4.20
219 220 2.562296 AGCCACAATAGGAGAAGGGAA 58.438 47.619 0.00 0.00 0.00 3.97
220 221 2.507471 AGCCACAATAGGAGAAGGGAAG 59.493 50.000 0.00 0.00 0.00 3.46
221 222 2.924421 CCACAATAGGAGAAGGGAAGC 58.076 52.381 0.00 0.00 0.00 3.86
222 223 2.507471 CCACAATAGGAGAAGGGAAGCT 59.493 50.000 0.00 0.00 0.00 3.74
223 224 3.539604 CACAATAGGAGAAGGGAAGCTG 58.460 50.000 0.00 0.00 0.00 4.24
224 225 2.092699 ACAATAGGAGAAGGGAAGCTGC 60.093 50.000 0.00 0.00 0.00 5.25
225 226 0.755686 ATAGGAGAAGGGAAGCTGCG 59.244 55.000 0.00 0.00 0.00 5.18
226 227 0.614979 TAGGAGAAGGGAAGCTGCGT 60.615 55.000 0.00 0.00 0.00 5.24
227 228 1.448717 GGAGAAGGGAAGCTGCGTC 60.449 63.158 7.05 7.05 0.00 5.19
228 229 1.594310 GAGAAGGGAAGCTGCGTCT 59.406 57.895 14.90 2.67 0.00 4.18
229 230 0.739112 GAGAAGGGAAGCTGCGTCTG 60.739 60.000 14.90 0.00 0.00 3.51
230 231 2.359230 AAGGGAAGCTGCGTCTGC 60.359 61.111 14.90 0.00 43.20 4.26
242 243 3.414700 GTCTGCGCCCGTGACTTG 61.415 66.667 4.18 0.00 0.00 3.16
248 249 3.414700 GCCCGTGACTTGCGTCTG 61.415 66.667 0.00 0.00 40.86 3.51
249 250 3.414700 CCCGTGACTTGCGTCTGC 61.415 66.667 0.00 0.00 40.86 4.26
260 261 2.002127 GCGTCTGCGAGATTGAAGG 58.998 57.895 0.00 0.00 41.33 3.46
261 262 0.458543 GCGTCTGCGAGATTGAAGGA 60.459 55.000 0.00 0.00 41.33 3.36
262 263 1.554392 CGTCTGCGAGATTGAAGGAG 58.446 55.000 0.00 0.00 41.33 3.69
263 264 1.133216 CGTCTGCGAGATTGAAGGAGA 59.867 52.381 0.00 0.00 41.33 3.71
264 265 2.794282 CGTCTGCGAGATTGAAGGAGAG 60.794 54.545 0.00 0.00 41.33 3.20
265 266 1.135915 TCTGCGAGATTGAAGGAGAGC 59.864 52.381 0.00 0.00 0.00 4.09
266 267 1.136695 CTGCGAGATTGAAGGAGAGCT 59.863 52.381 0.00 0.00 0.00 4.09
267 268 2.360483 CTGCGAGATTGAAGGAGAGCTA 59.640 50.000 0.00 0.00 0.00 3.32
268 269 2.961741 TGCGAGATTGAAGGAGAGCTAT 59.038 45.455 0.00 0.00 0.00 2.97
269 270 3.243670 TGCGAGATTGAAGGAGAGCTATG 60.244 47.826 0.00 0.00 0.00 2.23
270 271 3.243704 GCGAGATTGAAGGAGAGCTATGT 60.244 47.826 0.00 0.00 0.00 2.29
271 272 4.739137 GCGAGATTGAAGGAGAGCTATGTT 60.739 45.833 0.00 0.00 0.00 2.71
272 273 5.355596 CGAGATTGAAGGAGAGCTATGTTT 58.644 41.667 0.00 0.00 0.00 2.83
273 274 5.814705 CGAGATTGAAGGAGAGCTATGTTTT 59.185 40.000 0.00 0.00 0.00 2.43
274 275 6.314896 CGAGATTGAAGGAGAGCTATGTTTTT 59.685 38.462 0.00 0.00 0.00 1.94
296 297 6.569179 TTTTTAGCGTAATGAAGGAAAGCT 57.431 33.333 0.00 0.00 37.27 3.74
297 298 7.675962 TTTTTAGCGTAATGAAGGAAAGCTA 57.324 32.000 0.00 0.00 35.02 3.32
298 299 7.675962 TTTTAGCGTAATGAAGGAAAGCTAA 57.324 32.000 3.28 3.28 41.88 3.09
299 300 6.903883 TTAGCGTAATGAAGGAAAGCTAAG 57.096 37.500 3.28 0.00 39.72 2.18
300 301 4.833390 AGCGTAATGAAGGAAAGCTAAGT 58.167 39.130 0.00 0.00 0.00 2.24
301 302 4.870991 AGCGTAATGAAGGAAAGCTAAGTC 59.129 41.667 0.00 0.00 0.00 3.01
302 303 4.870991 GCGTAATGAAGGAAAGCTAAGTCT 59.129 41.667 0.00 0.00 0.00 3.24
303 304 5.220491 GCGTAATGAAGGAAAGCTAAGTCTG 60.220 44.000 0.00 0.00 0.00 3.51
304 305 5.220491 CGTAATGAAGGAAAGCTAAGTCTGC 60.220 44.000 0.00 0.00 0.00 4.26
305 306 2.688507 TGAAGGAAAGCTAAGTCTGCG 58.311 47.619 0.00 0.00 35.28 5.18
306 307 2.003301 GAAGGAAAGCTAAGTCTGCGG 58.997 52.381 0.00 0.00 35.28 5.69
307 308 0.250513 AGGAAAGCTAAGTCTGCGGG 59.749 55.000 0.00 0.00 35.28 6.13
308 309 0.036294 GGAAAGCTAAGTCTGCGGGT 60.036 55.000 0.00 0.00 35.28 5.28
309 310 1.610886 GGAAAGCTAAGTCTGCGGGTT 60.611 52.381 0.00 0.00 35.28 4.11
310 311 1.464997 GAAAGCTAAGTCTGCGGGTTG 59.535 52.381 0.00 0.00 35.28 3.77
311 312 0.396811 AAGCTAAGTCTGCGGGTTGT 59.603 50.000 0.00 0.00 35.28 3.32
312 313 0.320771 AGCTAAGTCTGCGGGTTGTG 60.321 55.000 0.00 0.00 35.28 3.33
313 314 1.912371 GCTAAGTCTGCGGGTTGTGC 61.912 60.000 0.00 0.00 0.00 4.57
314 315 1.626654 CTAAGTCTGCGGGTTGTGCG 61.627 60.000 0.00 0.00 34.24 5.34
315 316 2.089887 TAAGTCTGCGGGTTGTGCGA 62.090 55.000 0.00 0.00 34.24 5.10
316 317 2.731691 AAGTCTGCGGGTTGTGCGAT 62.732 55.000 0.00 0.00 34.24 4.58
317 318 2.434185 TCTGCGGGTTGTGCGATC 60.434 61.111 0.00 0.00 34.24 3.69
318 319 3.499737 CTGCGGGTTGTGCGATCC 61.500 66.667 0.00 0.00 34.24 3.36
320 321 4.778143 GCGGGTTGTGCGATCCCT 62.778 66.667 0.00 0.00 39.10 4.20
321 322 2.819595 CGGGTTGTGCGATCCCTG 60.820 66.667 0.00 0.00 39.10 4.45
322 323 3.134127 GGGTTGTGCGATCCCTGC 61.134 66.667 0.00 0.00 38.29 4.85
323 324 2.359850 GGTTGTGCGATCCCTGCA 60.360 61.111 0.00 0.00 40.70 4.41
324 325 1.750399 GGTTGTGCGATCCCTGCAT 60.750 57.895 0.00 0.00 45.34 3.96
325 326 1.718757 GGTTGTGCGATCCCTGCATC 61.719 60.000 0.00 0.00 45.34 3.91
326 327 1.451927 TTGTGCGATCCCTGCATCC 60.452 57.895 0.00 0.00 45.34 3.51
327 328 2.592861 GTGCGATCCCTGCATCCC 60.593 66.667 0.00 0.00 45.34 3.85
328 329 3.877450 TGCGATCCCTGCATCCCC 61.877 66.667 0.00 0.00 37.44 4.81
329 330 4.996434 GCGATCCCTGCATCCCCG 62.996 72.222 0.00 0.00 0.00 5.73
330 331 4.320456 CGATCCCTGCATCCCCGG 62.320 72.222 0.00 0.00 0.00 5.73
331 332 4.650377 GATCCCTGCATCCCCGGC 62.650 72.222 0.00 0.00 0.00 6.13
352 353 4.537433 CCTCGCTGGGCTGGCTAC 62.537 72.222 0.00 0.00 0.00 3.58
353 354 3.774528 CTCGCTGGGCTGGCTACA 61.775 66.667 0.00 0.00 0.00 2.74
354 355 3.083349 TCGCTGGGCTGGCTACAT 61.083 61.111 0.00 0.00 0.00 2.29
355 356 1.748329 CTCGCTGGGCTGGCTACATA 61.748 60.000 0.00 0.00 0.00 2.29
356 357 1.121407 TCGCTGGGCTGGCTACATAT 61.121 55.000 0.00 0.00 0.00 1.78
357 358 0.952497 CGCTGGGCTGGCTACATATG 60.952 60.000 0.00 0.00 0.00 1.78
358 359 1.239968 GCTGGGCTGGCTACATATGC 61.240 60.000 1.58 0.00 0.00 3.14
359 360 0.109153 CTGGGCTGGCTACATATGCA 59.891 55.000 1.58 0.00 0.00 3.96
360 361 0.773014 TGGGCTGGCTACATATGCAT 59.227 50.000 3.79 3.79 0.00 3.96
361 362 1.171308 GGGCTGGCTACATATGCATG 58.829 55.000 10.16 0.00 38.21 4.06
362 363 0.524862 GGCTGGCTACATATGCATGC 59.475 55.000 11.82 11.82 35.39 4.06
363 364 0.524862 GCTGGCTACATATGCATGCC 59.475 55.000 16.68 20.60 43.49 4.40
364 365 1.885359 GCTGGCTACATATGCATGCCT 60.885 52.381 24.79 8.18 43.57 4.75
365 366 2.511659 CTGGCTACATATGCATGCCTT 58.488 47.619 24.79 5.27 43.57 4.35
366 367 2.486982 CTGGCTACATATGCATGCCTTC 59.513 50.000 24.79 8.45 43.57 3.46
367 368 1.466167 GGCTACATATGCATGCCTTCG 59.534 52.381 16.68 3.89 40.36 3.79
368 369 1.466167 GCTACATATGCATGCCTTCGG 59.534 52.381 16.68 3.54 35.39 4.30
369 370 2.079158 CTACATATGCATGCCTTCGGG 58.921 52.381 16.68 2.40 35.39 5.14
370 371 0.473755 ACATATGCATGCCTTCGGGA 59.526 50.000 16.68 0.00 35.39 5.14
371 372 1.162698 CATATGCATGCCTTCGGGAG 58.837 55.000 16.68 0.00 37.25 4.30
373 374 2.055689 TATGCATGCCTTCGGGAGGG 62.056 60.000 16.68 0.00 46.40 4.30
374 375 4.883354 GCATGCCTTCGGGAGGGG 62.883 72.222 6.36 0.00 46.40 4.79
375 376 4.195334 CATGCCTTCGGGAGGGGG 62.195 72.222 4.07 0.00 46.40 5.40
388 389 2.283894 GGGGGCCCCTTCAACTTG 60.284 66.667 39.92 0.00 41.34 3.16
389 390 2.283894 GGGGCCCCTTCAACTTGG 60.284 66.667 35.49 0.00 0.00 3.61
390 391 2.283894 GGGCCCCTTCAACTTGGG 60.284 66.667 12.23 0.00 42.98 4.12
394 395 2.283894 CCCTTCAACTTGGGGGCC 60.284 66.667 0.00 0.00 39.76 5.80
395 396 2.283894 CCTTCAACTTGGGGGCCC 60.284 66.667 15.76 15.76 0.00 5.80
396 397 2.676471 CTTCAACTTGGGGGCCCG 60.676 66.667 17.79 5.27 39.42 6.13
397 398 4.293671 TTCAACTTGGGGGCCCGG 62.294 66.667 17.79 11.85 39.42 5.73
438 439 4.777854 TCAGGGCCGGCTCTGCTA 62.778 66.667 45.15 30.39 43.87 3.49
439 440 4.232878 CAGGGCCGGCTCTGCTAG 62.233 72.222 41.64 20.64 37.76 3.42
440 441 4.787280 AGGGCCGGCTCTGCTAGT 62.787 66.667 32.64 1.51 0.00 2.57
441 442 2.838225 GGGCCGGCTCTGCTAGTA 60.838 66.667 28.56 0.00 0.00 1.82
442 443 2.731374 GGCCGGCTCTGCTAGTAG 59.269 66.667 28.56 0.63 0.00 2.57
443 444 1.828660 GGCCGGCTCTGCTAGTAGA 60.829 63.158 28.56 10.34 0.00 2.59
444 445 1.182385 GGCCGGCTCTGCTAGTAGAT 61.182 60.000 28.56 0.00 0.00 1.98
445 446 1.535833 GCCGGCTCTGCTAGTAGATA 58.464 55.000 22.15 0.00 0.00 1.98
446 447 1.887198 GCCGGCTCTGCTAGTAGATAA 59.113 52.381 22.15 0.00 0.00 1.75
447 448 2.296471 GCCGGCTCTGCTAGTAGATAAA 59.704 50.000 22.15 0.00 0.00 1.40
448 449 3.243771 GCCGGCTCTGCTAGTAGATAAAA 60.244 47.826 22.15 0.00 0.00 1.52
449 450 4.561734 GCCGGCTCTGCTAGTAGATAAAAT 60.562 45.833 22.15 0.00 0.00 1.82
450 451 5.336531 GCCGGCTCTGCTAGTAGATAAAATA 60.337 44.000 22.15 0.00 0.00 1.40
451 452 6.628398 GCCGGCTCTGCTAGTAGATAAAATAT 60.628 42.308 22.15 0.00 0.00 1.28
452 453 6.754209 CCGGCTCTGCTAGTAGATAAAATATG 59.246 42.308 11.22 0.00 0.00 1.78
453 454 7.363007 CCGGCTCTGCTAGTAGATAAAATATGA 60.363 40.741 11.22 0.00 0.00 2.15
454 455 8.029522 CGGCTCTGCTAGTAGATAAAATATGAA 58.970 37.037 11.22 0.00 0.00 2.57
455 456 9.712305 GGCTCTGCTAGTAGATAAAATATGAAA 57.288 33.333 11.22 0.00 0.00 2.69
479 480 9.865321 AAACTACTTTTCATGATGGATCAAATG 57.135 29.630 0.00 0.00 40.69 2.32
480 481 8.812513 ACTACTTTTCATGATGGATCAAATGA 57.187 30.769 0.00 0.00 40.69 2.57
481 482 9.417561 ACTACTTTTCATGATGGATCAAATGAT 57.582 29.630 0.00 0.00 40.69 2.45
536 537 2.863401 AAAAACTCGGTCAAACCTGC 57.137 45.000 0.00 0.00 35.66 4.85
537 538 1.757682 AAAACTCGGTCAAACCTGCA 58.242 45.000 0.00 0.00 35.66 4.41
538 539 1.021968 AAACTCGGTCAAACCTGCAC 58.978 50.000 0.00 0.00 35.66 4.57
539 540 0.180406 AACTCGGTCAAACCTGCACT 59.820 50.000 0.00 0.00 35.66 4.40
540 541 0.249911 ACTCGGTCAAACCTGCACTC 60.250 55.000 0.00 0.00 35.66 3.51
541 542 1.284982 CTCGGTCAAACCTGCACTCG 61.285 60.000 0.00 0.00 35.66 4.18
542 543 1.594293 CGGTCAAACCTGCACTCGT 60.594 57.895 0.00 0.00 35.66 4.18
543 544 1.157870 CGGTCAAACCTGCACTCGTT 61.158 55.000 0.00 0.00 35.66 3.85
544 545 1.021968 GGTCAAACCTGCACTCGTTT 58.978 50.000 0.00 0.00 34.73 3.60
545 546 1.268539 GGTCAAACCTGCACTCGTTTG 60.269 52.381 17.35 17.35 46.57 2.93
548 549 2.038387 AAACCTGCACTCGTTTGACT 57.962 45.000 1.96 0.00 31.15 3.41
549 550 2.038387 AACCTGCACTCGTTTGACTT 57.962 45.000 0.00 0.00 0.00 3.01
550 551 2.038387 ACCTGCACTCGTTTGACTTT 57.962 45.000 0.00 0.00 0.00 2.66
551 552 1.940613 ACCTGCACTCGTTTGACTTTC 59.059 47.619 0.00 0.00 0.00 2.62
552 553 1.070577 CCTGCACTCGTTTGACTTTCG 60.071 52.381 0.00 0.00 0.00 3.46
553 554 1.858458 CTGCACTCGTTTGACTTTCGA 59.142 47.619 0.00 0.00 0.00 3.71
554 555 2.272678 TGCACTCGTTTGACTTTCGAA 58.727 42.857 0.00 0.00 33.32 3.71
555 556 2.673862 TGCACTCGTTTGACTTTCGAAA 59.326 40.909 10.71 10.71 33.32 3.46
556 557 3.125487 TGCACTCGTTTGACTTTCGAAAA 59.875 39.130 12.41 0.00 33.32 2.29
557 558 4.092816 GCACTCGTTTGACTTTCGAAAAA 58.907 39.130 12.41 0.49 33.32 1.94
587 588 9.774413 AATACACCTTATATAAAGAAACGGAGG 57.226 33.333 0.00 0.00 0.00 4.30
588 589 6.053650 ACACCTTATATAAAGAAACGGAGGC 58.946 40.000 0.00 0.00 0.00 4.70
589 590 5.469084 CACCTTATATAAAGAAACGGAGGCC 59.531 44.000 0.00 0.00 0.00 5.19
590 591 5.131475 ACCTTATATAAAGAAACGGAGGCCA 59.869 40.000 5.01 0.00 0.00 5.36
591 592 6.183361 ACCTTATATAAAGAAACGGAGGCCAT 60.183 38.462 5.01 0.00 0.00 4.40
592 593 6.149474 CCTTATATAAAGAAACGGAGGCCATG 59.851 42.308 5.01 0.00 0.00 3.66
593 594 2.871096 TAAAGAAACGGAGGCCATGT 57.129 45.000 5.01 0.00 0.00 3.21
594 595 1.995376 AAAGAAACGGAGGCCATGTT 58.005 45.000 5.01 3.06 0.00 2.71
595 596 1.995376 AAGAAACGGAGGCCATGTTT 58.005 45.000 16.80 16.80 38.44 2.83
597 598 1.243902 GAAACGGAGGCCATGTTTCA 58.756 50.000 28.25 0.00 46.61 2.69
598 599 1.200020 GAAACGGAGGCCATGTTTCAG 59.800 52.381 28.25 13.04 46.61 3.02
599 600 0.400213 AACGGAGGCCATGTTTCAGA 59.600 50.000 5.01 0.00 0.00 3.27
600 601 0.400213 ACGGAGGCCATGTTTCAGAA 59.600 50.000 5.01 0.00 0.00 3.02
601 602 1.202879 ACGGAGGCCATGTTTCAGAAA 60.203 47.619 5.01 0.00 0.00 2.52
602 603 1.885887 CGGAGGCCATGTTTCAGAAAA 59.114 47.619 5.01 0.00 0.00 2.29
603 604 2.095059 CGGAGGCCATGTTTCAGAAAAG 60.095 50.000 5.01 0.00 0.00 2.27
604 605 3.157087 GGAGGCCATGTTTCAGAAAAGA 58.843 45.455 5.01 0.00 0.00 2.52
605 606 3.573967 GGAGGCCATGTTTCAGAAAAGAA 59.426 43.478 5.01 0.00 0.00 2.52
606 607 4.039124 GGAGGCCATGTTTCAGAAAAGAAA 59.961 41.667 5.01 0.00 35.28 2.52
607 608 5.453198 GGAGGCCATGTTTCAGAAAAGAAAA 60.453 40.000 5.01 0.00 39.05 2.29
608 609 5.988287 AGGCCATGTTTCAGAAAAGAAAAA 58.012 33.333 5.01 0.00 39.05 1.94
631 632 4.201951 CCGGTTCGGGAGTGATTG 57.798 61.111 0.00 0.00 44.15 2.67
632 633 2.106683 CCGGTTCGGGAGTGATTGC 61.107 63.158 0.00 0.00 44.15 3.56
633 634 2.106683 CGGTTCGGGAGTGATTGCC 61.107 63.158 0.00 0.00 0.00 4.52
634 635 1.002624 GGTTCGGGAGTGATTGCCA 60.003 57.895 0.00 0.00 37.05 4.92
635 636 0.394352 GGTTCGGGAGTGATTGCCAT 60.394 55.000 0.00 0.00 37.05 4.40
636 637 1.134220 GGTTCGGGAGTGATTGCCATA 60.134 52.381 0.00 0.00 37.05 2.74
637 638 2.639065 GTTCGGGAGTGATTGCCATAA 58.361 47.619 0.00 0.00 37.05 1.90
638 639 2.614057 GTTCGGGAGTGATTGCCATAAG 59.386 50.000 0.00 0.00 37.05 1.73
639 640 0.947244 CGGGAGTGATTGCCATAAGC 59.053 55.000 0.00 0.00 37.05 3.09
678 679 3.927142 GGGAGAAATCATACGGCTATTCG 59.073 47.826 0.00 0.00 0.00 3.34
680 681 4.557205 GAGAAATCATACGGCTATTCGGT 58.443 43.478 0.00 0.00 0.00 4.69
732 733 6.036735 TCGATCTTTTTCAATTATCACCCGAC 59.963 38.462 0.00 0.00 0.00 4.79
757 758 2.746269 GCGTATCACGGCCATTAGTTA 58.254 47.619 2.24 0.00 42.82 2.24
758 759 3.125316 GCGTATCACGGCCATTAGTTAA 58.875 45.455 2.24 0.00 42.82 2.01
759 760 3.060070 GCGTATCACGGCCATTAGTTAAC 60.060 47.826 2.24 0.00 42.82 2.01
760 761 3.180980 CGTATCACGGCCATTAGTTAACG 59.819 47.826 2.24 0.00 38.08 3.18
761 762 2.747396 TCACGGCCATTAGTTAACGT 57.253 45.000 2.24 0.00 34.61 3.99
762 763 3.865011 TCACGGCCATTAGTTAACGTA 57.135 42.857 2.24 0.00 32.85 3.57
763 764 4.389890 TCACGGCCATTAGTTAACGTAT 57.610 40.909 2.24 0.00 32.85 3.06
764 765 5.512753 TCACGGCCATTAGTTAACGTATA 57.487 39.130 2.24 0.00 32.85 1.47
765 766 6.088016 TCACGGCCATTAGTTAACGTATAT 57.912 37.500 2.24 0.00 32.85 0.86
766 767 7.213216 TCACGGCCATTAGTTAACGTATATA 57.787 36.000 2.24 0.00 32.85 0.86
767 768 7.829725 TCACGGCCATTAGTTAACGTATATAT 58.170 34.615 2.24 0.00 32.85 0.86
768 769 7.970061 TCACGGCCATTAGTTAACGTATATATC 59.030 37.037 2.24 0.00 32.85 1.63
769 770 7.756272 CACGGCCATTAGTTAACGTATATATCA 59.244 37.037 2.24 0.00 32.85 2.15
770 771 7.756722 ACGGCCATTAGTTAACGTATATATCAC 59.243 37.037 2.24 0.00 32.30 3.06
771 772 7.044510 CGGCCATTAGTTAACGTATATATCACG 60.045 40.741 2.24 7.93 44.80 4.35
772 773 7.221452 GGCCATTAGTTAACGTATATATCACGG 59.779 40.741 12.74 0.00 43.59 4.94
773 774 7.253883 GCCATTAGTTAACGTATATATCACGGC 60.254 40.741 12.74 2.15 43.59 5.68
774 775 7.221452 CCATTAGTTAACGTATATATCACGGCC 59.779 40.741 12.74 0.00 43.59 6.13
775 776 5.710513 AGTTAACGTATATATCACGGCCA 57.289 39.130 2.24 0.00 43.59 5.36
776 777 6.276832 AGTTAACGTATATATCACGGCCAT 57.723 37.500 2.24 0.00 43.59 4.40
777 778 6.694447 AGTTAACGTATATATCACGGCCATT 58.306 36.000 2.24 0.00 43.59 3.16
778 779 7.829725 AGTTAACGTATATATCACGGCCATTA 58.170 34.615 2.24 0.00 43.59 1.90
779 780 8.306038 AGTTAACGTATATATCACGGCCATTAA 58.694 33.333 2.24 6.85 43.59 1.40
780 781 9.090692 GTTAACGTATATATCACGGCCATTAAT 57.909 33.333 2.24 0.00 43.59 1.40
781 782 9.656040 TTAACGTATATATCACGGCCATTAATT 57.344 29.630 2.24 0.00 43.59 1.40
784 785 9.309516 ACGTATATATCACGGCCATTAATTTAG 57.690 33.333 2.24 0.00 43.59 1.85
788 789 3.011119 TCACGGCCATTAATTTAGCGTT 58.989 40.909 2.24 0.00 0.00 4.84
789 790 4.190001 TCACGGCCATTAATTTAGCGTTA 58.810 39.130 2.24 0.00 0.00 3.18
814 815 2.036733 CGCCACTAATTAATCGGAGGGA 59.963 50.000 0.00 0.00 0.00 4.20
1114 1295 3.291167 GACGCGCAAGGTTTCGTCC 62.291 63.158 5.73 0.00 43.67 4.79
1116 1297 2.677003 CGCGCAAGGTTTCGTCCAT 61.677 57.895 8.75 0.00 38.28 3.41
1121 1302 2.695359 GCAAGGTTTCGTCCATGACTA 58.305 47.619 0.00 0.00 0.00 2.59
1128 1309 4.232221 GTTTCGTCCATGACTACTTCGAA 58.768 43.478 0.00 0.00 34.82 3.71
1131 1312 2.915463 CGTCCATGACTACTTCGAACAC 59.085 50.000 0.00 0.00 0.00 3.32
1138 1319 6.183360 CCATGACTACTTCGAACACAAATCTC 60.183 42.308 0.00 0.00 0.00 2.75
1393 1579 8.547967 TGTGATTAAGTTGTGAATTCTACTCC 57.452 34.615 7.05 0.00 0.00 3.85
1400 1586 2.027561 TGTGAATTCTACTCCGGGTTGG 60.028 50.000 0.00 0.00 40.09 3.77
1427 1613 2.158475 TGGGCTCAACTGAACTGGATTT 60.158 45.455 0.00 0.00 0.00 2.17
1442 1628 3.672808 TGGATTTTGCGGCAAATTGATT 58.327 36.364 26.87 11.06 33.19 2.57
1455 1641 4.724602 GCAAATTGATTGTGCGGTTTATGC 60.725 41.667 0.00 0.00 41.32 3.14
1510 1704 7.486647 TCGTCGGCTATATCTTACTTTCTTTT 58.513 34.615 0.00 0.00 0.00 2.27
1522 1716 4.563337 ACTTTCTTTTTAACTGCCGGTC 57.437 40.909 1.90 0.00 0.00 4.79
1628 1822 3.008375 ACAAGTAGATGGCTCTTTGCAGA 59.992 43.478 0.00 0.00 45.15 4.26
1675 1869 4.141711 GGGTGATGTTTCAGTAGCTATGGA 60.142 45.833 0.00 0.00 30.85 3.41
1715 1909 2.426522 TGGTTTCGAGCTGAATTCCTG 58.573 47.619 2.27 0.00 36.22 3.86
1719 1913 2.099141 TCGAGCTGAATTCCTGTTGG 57.901 50.000 2.27 0.00 0.00 3.77
1741 1935 9.203421 GTTGGGAAAAGGATATTTGTAAAGTTG 57.797 33.333 0.00 0.00 0.00 3.16
1749 1943 6.659242 AGGATATTTGTAAAGTTGTGTCCAGG 59.341 38.462 0.00 0.00 0.00 4.45
1789 1983 5.286438 AGGAAAACTATCAAAAACCAACGC 58.714 37.500 0.00 0.00 0.00 4.84
1797 1991 4.647424 TCAAAAACCAACGCTTCATTCT 57.353 36.364 0.00 0.00 0.00 2.40
1814 2008 7.536622 GCTTCATTCTGTTTATGTCACTGAAAG 59.463 37.037 0.00 0.00 36.18 2.62
1863 2194 8.242053 ACATTTTCTAAATCAGATGCAAGTCTG 58.758 33.333 10.52 10.52 45.51 3.51
1919 2250 3.120546 CGGAACACATGTGAATCAGTGTC 60.121 47.826 31.94 13.86 43.77 3.67
1963 2294 6.560003 TGGTTCCTCAAATAGAAGATGCTA 57.440 37.500 0.00 0.00 0.00 3.49
1982 2313 2.638556 AGATTTGTCGTCAGGTCTCG 57.361 50.000 0.00 0.00 0.00 4.04
1983 2314 0.992802 GATTTGTCGTCAGGTCTCGC 59.007 55.000 0.00 0.00 0.00 5.03
1991 2322 3.003482 GTCGTCAGGTCTCGCATATAAGT 59.997 47.826 0.00 0.00 0.00 2.24
1992 2323 3.630769 TCGTCAGGTCTCGCATATAAGTT 59.369 43.478 0.00 0.00 0.00 2.66
1993 2324 3.731216 CGTCAGGTCTCGCATATAAGTTG 59.269 47.826 0.00 0.00 0.00 3.16
2062 2398 4.574599 ATTTGTCTTGGCAAGTCACTTC 57.425 40.909 23.45 10.94 0.00 3.01
2075 2411 6.128418 GGCAAGTCACTTCATAACTCTCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
2167 2510 7.867403 TCCTGCTGTTTTCATGTAAAAAGAATC 59.133 33.333 16.75 2.70 38.76 2.52
2171 2514 7.116805 GCTGTTTTCATGTAAAAAGAATCCCTG 59.883 37.037 16.75 1.38 38.76 4.45
2182 2525 6.544928 AAAAGAATCCCTGTTGTTTTCAGT 57.455 33.333 0.00 0.00 31.36 3.41
2194 2537 4.447138 TGTTTTCAGTCCTACCACCAAT 57.553 40.909 0.00 0.00 0.00 3.16
2233 2580 7.272731 AGTTCGTAAGTTTTTCAAAGTTCTTGC 59.727 33.333 0.00 0.00 39.48 4.01
2246 2601 1.810755 GTTCTTGCGGAACCCCTTTAG 59.189 52.381 10.16 0.00 46.17 1.85
2256 2611 2.322339 ACCCCTTTAGTCGAAGAGGT 57.678 50.000 0.00 0.00 36.95 3.85
2314 2675 9.991906 AAAGCCCAATGATTTATTTCAGATATG 57.008 29.630 0.00 0.00 0.00 1.78
2330 2691 8.500753 TTCAGATATGTACCAACCAATTGTAC 57.499 34.615 4.43 0.66 33.60 2.90
2342 2703 7.656948 ACCAACCAATTGTACATGAAATTTCTG 59.343 33.333 18.64 15.39 33.60 3.02
2426 2787 5.768164 CCTGTGGTTGTTAACATAGACCTTT 59.232 40.000 22.45 0.00 0.00 3.11
2620 2981 2.542824 CGTGGTTAGTTTTGGCAAGGTG 60.543 50.000 0.00 0.00 0.00 4.00
2674 3037 3.492482 GGCTATGTCTCTGAGGCTTCTTC 60.492 52.174 11.02 0.00 33.21 2.87
2680 3043 2.824936 TCTCTGAGGCTTCTTCAGACTG 59.175 50.000 4.59 0.00 43.38 3.51
2842 3214 7.344134 ACATGTACACTCAGTATCCTAGTACA 58.656 38.462 0.00 6.13 42.78 2.90
2843 3215 7.499563 ACATGTACACTCAGTATCCTAGTACAG 59.500 40.741 0.00 5.05 42.16 2.74
2844 3216 6.955364 TGTACACTCAGTATCCTAGTACAGT 58.045 40.000 0.00 0.00 36.43 3.55
2845 3217 8.082672 TGTACACTCAGTATCCTAGTACAGTA 57.917 38.462 0.00 0.00 36.43 2.74
2846 3218 7.984050 TGTACACTCAGTATCCTAGTACAGTAC 59.016 40.741 2.05 2.05 36.43 2.73
2847 3219 7.197901 ACACTCAGTATCCTAGTACAGTACT 57.802 40.000 17.51 17.51 42.68 2.73
2848 3220 8.316497 ACACTCAGTATCCTAGTACAGTACTA 57.684 38.462 17.86 17.86 40.14 1.82
2849 3221 8.936787 ACACTCAGTATCCTAGTACAGTACTAT 58.063 37.037 18.96 9.70 40.25 2.12
2872 3244 0.183971 TTTTTGGGCCTCGGAGAACA 59.816 50.000 6.58 0.00 34.09 3.18
3226 3617 0.997196 GATGTAACCGTCCGAGCAAC 59.003 55.000 0.00 0.00 0.00 4.17
3263 3654 2.237392 GGCCACCACTCTAAGACTTGAT 59.763 50.000 0.00 0.00 0.00 2.57
3536 3928 1.640917 ACTATGTGTTGGACTCGGGT 58.359 50.000 0.00 0.00 0.00 5.28
3686 4078 0.763035 AAGGTGGAGCTGTTTACGGT 59.237 50.000 0.00 0.00 0.00 4.83
3821 4213 4.944619 TGAGTTCTCGGCATGATTAGAT 57.055 40.909 0.00 0.00 0.00 1.98
3947 4339 2.610727 GGTGTAGTGACCAGAACTGAGC 60.611 54.545 3.19 0.00 35.88 4.26
3953 4345 1.337167 TGACCAGAACTGAGCGACATG 60.337 52.381 3.19 0.00 0.00 3.21
3963 4355 2.725206 CTGAGCGACATGATCTCATTCG 59.275 50.000 0.00 14.70 38.56 3.34
4024 4417 9.020731 TGTGTATACTGTGACTGAGAAGAATTA 57.979 33.333 4.17 0.00 0.00 1.40
4095 4488 6.084925 GCTGAAGTGATTCTCTTGTCATTTG 58.915 40.000 5.75 0.00 0.00 2.32
4195 4588 8.680001 TCAATGAACAATCTAATCATGAAGTGG 58.320 33.333 0.00 0.00 34.21 4.00
4226 4619 0.099791 GTCCCAACAAACACACCACG 59.900 55.000 0.00 0.00 0.00 4.94
4236 4629 3.410631 AACACACCACGGATTACATCA 57.589 42.857 0.00 0.00 0.00 3.07
4248 4641 4.754618 CGGATTACATCAAATTGATCCCGA 59.245 41.667 17.34 3.61 34.28 5.14
4249 4642 5.334105 CGGATTACATCAAATTGATCCCGAC 60.334 44.000 17.34 7.15 34.28 4.79
4252 4646 7.390440 GGATTACATCAAATTGATCCCGACATA 59.610 37.037 5.36 0.00 34.28 2.29
4273 4671 2.730382 TGAGACGGCTAGAACATGGTA 58.270 47.619 0.00 0.00 0.00 3.25
4282 4680 6.041637 ACGGCTAGAACATGGTATTGAAGATA 59.958 38.462 0.00 0.00 0.00 1.98
4283 4681 6.929049 CGGCTAGAACATGGTATTGAAGATAA 59.071 38.462 0.00 0.00 0.00 1.75
4350 4751 2.106683 GTGTGCACGGTATCTGGGC 61.107 63.158 13.13 0.00 0.00 5.36
4385 4786 1.284297 CGTGATGCGTGCTGTGAAGA 61.284 55.000 0.00 0.00 35.54 2.87
4389 4790 0.671781 ATGCGTGCTGTGAAGACTCC 60.672 55.000 0.00 0.00 0.00 3.85
4429 4830 5.336055 CCAATACAAAAACAATACCAGCGGA 60.336 40.000 1.50 0.00 0.00 5.54
4444 4845 2.156310 CAGCGGAAGTACGGTACAAAAC 59.844 50.000 19.62 7.94 43.39 2.43
4449 4850 1.130955 AGTACGGTACAAAACGCGTG 58.869 50.000 14.98 2.21 36.24 5.34
4458 4860 0.787787 CAAAACGCGTGATTCCGAGA 59.212 50.000 14.98 0.00 0.00 4.04
4481 4883 0.609131 GTGTACCAGGCCAGCACAAT 60.609 55.000 5.01 0.00 0.00 2.71
4482 4884 0.988063 TGTACCAGGCCAGCACAATA 59.012 50.000 5.01 0.00 0.00 1.90
4483 4885 1.563879 TGTACCAGGCCAGCACAATAT 59.436 47.619 5.01 0.00 0.00 1.28
4484 4886 1.949525 GTACCAGGCCAGCACAATATG 59.050 52.381 5.01 0.00 0.00 1.78
4485 4887 0.332632 ACCAGGCCAGCACAATATGT 59.667 50.000 5.01 0.00 0.00 2.29
4486 4888 1.272648 ACCAGGCCAGCACAATATGTT 60.273 47.619 5.01 0.00 0.00 2.71
4520 4922 3.687321 CTCCTGCCACATCACCCGG 62.687 68.421 0.00 0.00 0.00 5.73
4580 5174 3.008375 CCTTCCCTCACTCATGTCAGAAA 59.992 47.826 0.00 0.00 0.00 2.52
4607 5201 2.203938 AGGGACCACGACACCCAT 60.204 61.111 0.00 0.00 45.43 4.00
4608 5202 0.974010 GAGGGACCACGACACCCATA 60.974 60.000 0.00 0.00 45.43 2.74
4653 5247 2.048503 CTCCACCCGTTGTCCGTC 60.049 66.667 0.00 0.00 33.66 4.79
4711 5306 1.140252 ACCACCACCTAGACACAACAC 59.860 52.381 0.00 0.00 0.00 3.32
4728 5323 1.028330 CACGAAGATGCAGGTGCCAT 61.028 55.000 0.00 0.00 41.18 4.40
4744 5339 1.080230 CATATCCGGCAGCGAGGAG 60.080 63.158 12.95 0.00 40.26 3.69
4806 5401 1.471501 CCGACCGAGAAATCTGCATCA 60.472 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.540363 TGCTAACGCTTAGGCTATGCC 60.540 52.381 22.27 11.27 42.70 4.40
20 21 1.865865 TGCTAACGCTTAGGCTATGC 58.134 50.000 19.41 19.41 36.97 3.14
21 22 3.433615 GGATTGCTAACGCTTAGGCTATG 59.566 47.826 0.00 0.00 36.97 2.23
22 23 3.071023 TGGATTGCTAACGCTTAGGCTAT 59.929 43.478 0.00 0.00 36.97 2.97
23 24 2.432874 TGGATTGCTAACGCTTAGGCTA 59.567 45.455 0.00 0.00 36.97 3.93
24 25 1.209504 TGGATTGCTAACGCTTAGGCT 59.790 47.619 0.00 0.00 36.97 4.58
25 26 1.663695 TGGATTGCTAACGCTTAGGC 58.336 50.000 6.82 0.00 36.97 3.93
26 27 2.476619 CGATGGATTGCTAACGCTTAGG 59.523 50.000 6.82 0.00 36.97 2.69
27 28 3.381045 TCGATGGATTGCTAACGCTTAG 58.619 45.455 0.00 0.00 36.97 2.18
28 29 3.446310 TCGATGGATTGCTAACGCTTA 57.554 42.857 0.00 0.00 36.97 3.09
29 30 2.309528 TCGATGGATTGCTAACGCTT 57.690 45.000 0.00 0.00 36.97 4.68
30 31 2.533266 ATCGATGGATTGCTAACGCT 57.467 45.000 0.00 0.00 36.97 5.07
31 32 2.543848 TGAATCGATGGATTGCTAACGC 59.456 45.455 7.77 0.00 42.86 4.84
32 33 4.794248 TTGAATCGATGGATTGCTAACG 57.206 40.909 7.77 0.00 42.86 3.18
33 34 8.886816 GATTATTGAATCGATGGATTGCTAAC 57.113 34.615 7.77 0.00 42.86 2.34
47 48 2.474526 CGGCCGCATCGATTATTGAATC 60.475 50.000 14.67 0.00 38.51 2.52
48 49 1.464608 CGGCCGCATCGATTATTGAAT 59.535 47.619 14.67 0.00 0.00 2.57
49 50 0.865111 CGGCCGCATCGATTATTGAA 59.135 50.000 14.67 0.00 0.00 2.69
50 51 0.032815 TCGGCCGCATCGATTATTGA 59.967 50.000 23.51 0.00 0.00 2.57
51 52 1.078709 ATCGGCCGCATCGATTATTG 58.921 50.000 23.51 0.00 43.75 1.90
52 53 2.268298 GTATCGGCCGCATCGATTATT 58.732 47.619 23.51 0.00 43.75 1.40
53 54 1.203758 TGTATCGGCCGCATCGATTAT 59.796 47.619 23.51 8.77 43.75 1.28
54 55 0.599060 TGTATCGGCCGCATCGATTA 59.401 50.000 23.51 0.00 43.75 1.75
55 56 0.249699 TTGTATCGGCCGCATCGATT 60.250 50.000 23.51 1.03 43.75 3.34
57 58 1.142097 TTTGTATCGGCCGCATCGA 59.858 52.632 23.51 9.68 41.04 3.59
58 59 1.275657 GTTTGTATCGGCCGCATCG 59.724 57.895 23.51 0.00 0.00 3.84
59 60 0.304705 CTGTTTGTATCGGCCGCATC 59.695 55.000 23.51 13.17 0.00 3.91
60 61 0.107897 TCTGTTTGTATCGGCCGCAT 60.108 50.000 23.51 17.29 0.00 4.73
61 62 0.320858 TTCTGTTTGTATCGGCCGCA 60.321 50.000 23.51 10.59 0.00 5.69
62 63 0.800012 TTTCTGTTTGTATCGGCCGC 59.200 50.000 23.51 7.40 0.00 6.53
63 64 2.285602 CGATTTCTGTTTGTATCGGCCG 60.286 50.000 22.12 22.12 36.99 6.13
64 65 2.538939 GCGATTTCTGTTTGTATCGGCC 60.539 50.000 0.00 0.00 40.01 6.13
65 66 2.351726 AGCGATTTCTGTTTGTATCGGC 59.648 45.455 0.00 0.00 40.01 5.54
66 67 5.041287 TCTAGCGATTTCTGTTTGTATCGG 58.959 41.667 0.00 0.00 40.01 4.18
67 68 6.346120 CCATCTAGCGATTTCTGTTTGTATCG 60.346 42.308 0.00 0.00 41.93 2.92
68 69 6.073548 CCCATCTAGCGATTTCTGTTTGTATC 60.074 42.308 0.00 0.00 0.00 2.24
69 70 5.760253 CCCATCTAGCGATTTCTGTTTGTAT 59.240 40.000 0.00 0.00 0.00 2.29
70 71 5.116180 CCCATCTAGCGATTTCTGTTTGTA 58.884 41.667 0.00 0.00 0.00 2.41
71 72 3.941483 CCCATCTAGCGATTTCTGTTTGT 59.059 43.478 0.00 0.00 0.00 2.83
72 73 3.313526 CCCCATCTAGCGATTTCTGTTTG 59.686 47.826 0.00 0.00 0.00 2.93
73 74 3.545703 CCCCATCTAGCGATTTCTGTTT 58.454 45.455 0.00 0.00 0.00 2.83
74 75 2.158755 CCCCCATCTAGCGATTTCTGTT 60.159 50.000 0.00 0.00 0.00 3.16
75 76 1.417890 CCCCCATCTAGCGATTTCTGT 59.582 52.381 0.00 0.00 0.00 3.41
76 77 1.879796 GCCCCCATCTAGCGATTTCTG 60.880 57.143 0.00 0.00 0.00 3.02
77 78 0.398318 GCCCCCATCTAGCGATTTCT 59.602 55.000 0.00 0.00 0.00 2.52
78 79 2.934083 GCCCCCATCTAGCGATTTC 58.066 57.895 0.00 0.00 0.00 2.17
84 85 4.937431 GGCACGCCCCCATCTAGC 62.937 72.222 0.00 0.00 0.00 3.42
97 98 0.886490 CCATATCTCCAAGCCGGCAC 60.886 60.000 31.54 0.00 33.14 5.01
98 99 1.053835 TCCATATCTCCAAGCCGGCA 61.054 55.000 31.54 6.82 33.14 5.69
99 100 0.108585 TTCCATATCTCCAAGCCGGC 59.891 55.000 21.89 21.89 33.14 6.13
100 101 2.867109 ATTCCATATCTCCAAGCCGG 57.133 50.000 0.00 0.00 0.00 6.13
101 102 3.600388 GGTATTCCATATCTCCAAGCCG 58.400 50.000 0.00 0.00 0.00 5.52
102 103 3.260884 TCGGTATTCCATATCTCCAAGCC 59.739 47.826 0.00 0.00 0.00 4.35
103 104 4.537135 TCGGTATTCCATATCTCCAAGC 57.463 45.455 0.00 0.00 0.00 4.01
104 105 6.153510 TGAGATCGGTATTCCATATCTCCAAG 59.846 42.308 19.62 0.00 44.15 3.61
105 106 6.016555 TGAGATCGGTATTCCATATCTCCAA 58.983 40.000 19.62 7.15 44.15 3.53
106 107 5.580022 TGAGATCGGTATTCCATATCTCCA 58.420 41.667 19.62 10.67 44.15 3.86
107 108 6.531503 TTGAGATCGGTATTCCATATCTCC 57.468 41.667 19.62 9.06 44.15 3.71
108 109 9.442047 AAAATTGAGATCGGTATTCCATATCTC 57.558 33.333 17.32 17.32 44.55 2.75
109 110 9.224267 CAAAATTGAGATCGGTATTCCATATCT 57.776 33.333 3.65 3.65 38.21 1.98
110 111 9.219603 TCAAAATTGAGATCGGTATTCCATATC 57.780 33.333 0.00 0.00 32.50 1.63
111 112 9.573166 TTCAAAATTGAGATCGGTATTCCATAT 57.427 29.630 0.00 0.00 38.61 1.78
112 113 8.972458 TTCAAAATTGAGATCGGTATTCCATA 57.028 30.769 0.00 0.00 38.61 2.74
113 114 7.013655 CCTTCAAAATTGAGATCGGTATTCCAT 59.986 37.037 0.00 0.00 38.61 3.41
114 115 6.318648 CCTTCAAAATTGAGATCGGTATTCCA 59.681 38.462 0.00 0.00 38.61 3.53
115 116 6.238759 CCCTTCAAAATTGAGATCGGTATTCC 60.239 42.308 0.00 0.00 38.61 3.01
116 117 6.542370 TCCCTTCAAAATTGAGATCGGTATTC 59.458 38.462 0.00 0.00 38.61 1.75
117 118 6.423182 TCCCTTCAAAATTGAGATCGGTATT 58.577 36.000 0.00 0.00 38.61 1.89
118 119 6.001449 TCCCTTCAAAATTGAGATCGGTAT 57.999 37.500 0.00 0.00 38.61 2.73
119 120 5.188948 TCTCCCTTCAAAATTGAGATCGGTA 59.811 40.000 0.00 0.00 38.61 4.02
120 121 4.019321 TCTCCCTTCAAAATTGAGATCGGT 60.019 41.667 0.00 0.00 38.61 4.69
121 122 4.517285 TCTCCCTTCAAAATTGAGATCGG 58.483 43.478 0.00 0.00 38.61 4.18
122 123 6.459298 CCATTCTCCCTTCAAAATTGAGATCG 60.459 42.308 0.00 0.00 38.61 3.69
123 124 6.183360 CCCATTCTCCCTTCAAAATTGAGATC 60.183 42.308 0.00 0.00 38.61 2.75
124 125 5.659971 CCCATTCTCCCTTCAAAATTGAGAT 59.340 40.000 0.00 0.00 38.61 2.75
125 126 5.018809 CCCATTCTCCCTTCAAAATTGAGA 58.981 41.667 0.00 0.00 38.61 3.27
126 127 4.382362 GCCCATTCTCCCTTCAAAATTGAG 60.382 45.833 0.00 0.00 38.61 3.02
127 128 3.515104 GCCCATTCTCCCTTCAAAATTGA 59.485 43.478 0.00 0.00 34.92 2.57
128 129 3.516700 AGCCCATTCTCCCTTCAAAATTG 59.483 43.478 0.00 0.00 0.00 2.32
129 130 3.794911 AGCCCATTCTCCCTTCAAAATT 58.205 40.909 0.00 0.00 0.00 1.82
130 131 3.479866 AGCCCATTCTCCCTTCAAAAT 57.520 42.857 0.00 0.00 0.00 1.82
131 132 2.999185 AGCCCATTCTCCCTTCAAAA 57.001 45.000 0.00 0.00 0.00 2.44
132 133 2.647299 TGTAGCCCATTCTCCCTTCAAA 59.353 45.455 0.00 0.00 0.00 2.69
133 134 2.274542 TGTAGCCCATTCTCCCTTCAA 58.725 47.619 0.00 0.00 0.00 2.69
134 135 1.965414 TGTAGCCCATTCTCCCTTCA 58.035 50.000 0.00 0.00 0.00 3.02
135 136 2.708325 AGATGTAGCCCATTCTCCCTTC 59.292 50.000 0.00 0.00 32.56 3.46
136 137 2.441001 CAGATGTAGCCCATTCTCCCTT 59.559 50.000 0.00 0.00 32.56 3.95
137 138 2.053244 CAGATGTAGCCCATTCTCCCT 58.947 52.381 0.00 0.00 32.56 4.20
138 139 1.771255 ACAGATGTAGCCCATTCTCCC 59.229 52.381 0.00 0.00 32.56 4.30
139 140 3.898123 TCTACAGATGTAGCCCATTCTCC 59.102 47.826 13.97 0.00 45.69 3.71
140 141 5.477510 CATCTACAGATGTAGCCCATTCTC 58.522 45.833 13.97 0.00 45.69 2.87
141 142 5.480642 CATCTACAGATGTAGCCCATTCT 57.519 43.478 13.97 0.00 45.69 2.40
153 154 5.538053 CAGGTGTATGTCCTCATCTACAGAT 59.462 44.000 0.00 0.00 35.70 2.90
154 155 4.889995 CAGGTGTATGTCCTCATCTACAGA 59.110 45.833 0.00 0.00 35.70 3.41
155 156 4.500545 GCAGGTGTATGTCCTCATCTACAG 60.501 50.000 0.00 0.00 35.70 2.74
156 157 3.384789 GCAGGTGTATGTCCTCATCTACA 59.615 47.826 0.00 0.00 35.70 2.74
157 158 3.384789 TGCAGGTGTATGTCCTCATCTAC 59.615 47.826 0.00 0.00 35.70 2.59
158 159 3.638627 CTGCAGGTGTATGTCCTCATCTA 59.361 47.826 5.57 0.00 35.70 1.98
159 160 2.433604 CTGCAGGTGTATGTCCTCATCT 59.566 50.000 5.57 0.00 35.70 2.90
160 161 2.432146 TCTGCAGGTGTATGTCCTCATC 59.568 50.000 15.13 0.00 35.70 2.92
161 162 2.470990 TCTGCAGGTGTATGTCCTCAT 58.529 47.619 15.13 0.00 38.00 2.90
162 163 1.937191 TCTGCAGGTGTATGTCCTCA 58.063 50.000 15.13 0.00 32.37 3.86
163 164 2.224161 GGATCTGCAGGTGTATGTCCTC 60.224 54.545 15.13 0.00 32.37 3.71
164 165 1.765314 GGATCTGCAGGTGTATGTCCT 59.235 52.381 15.13 0.00 35.45 3.85
165 166 1.486310 TGGATCTGCAGGTGTATGTCC 59.514 52.381 15.13 3.26 0.00 4.02
166 167 2.169352 AGTGGATCTGCAGGTGTATGTC 59.831 50.000 15.13 0.00 0.00 3.06
167 168 2.191400 AGTGGATCTGCAGGTGTATGT 58.809 47.619 15.13 0.00 0.00 2.29
168 169 2.996249 AGTGGATCTGCAGGTGTATG 57.004 50.000 15.13 0.00 0.00 2.39
169 170 5.130975 TCAATTAGTGGATCTGCAGGTGTAT 59.869 40.000 15.13 0.00 0.00 2.29
170 171 4.469586 TCAATTAGTGGATCTGCAGGTGTA 59.530 41.667 15.13 0.00 0.00 2.90
171 172 3.264193 TCAATTAGTGGATCTGCAGGTGT 59.736 43.478 15.13 0.00 0.00 4.16
172 173 3.875727 CTCAATTAGTGGATCTGCAGGTG 59.124 47.826 15.13 0.00 0.00 4.00
173 174 3.118112 CCTCAATTAGTGGATCTGCAGGT 60.118 47.826 15.13 6.50 32.49 4.00
174 175 3.135348 TCCTCAATTAGTGGATCTGCAGG 59.865 47.826 15.13 0.00 35.06 4.85
175 176 4.141756 ACTCCTCAATTAGTGGATCTGCAG 60.142 45.833 7.63 7.63 39.08 4.41
176 177 3.776969 ACTCCTCAATTAGTGGATCTGCA 59.223 43.478 0.00 0.00 39.08 4.41
177 178 4.414337 ACTCCTCAATTAGTGGATCTGC 57.586 45.455 0.00 0.00 39.08 4.26
178 179 5.510520 GGCTACTCCTCAATTAGTGGATCTG 60.511 48.000 0.00 0.00 39.08 2.90
179 180 4.591072 GGCTACTCCTCAATTAGTGGATCT 59.409 45.833 0.00 0.00 39.08 2.75
180 181 4.345257 TGGCTACTCCTCAATTAGTGGATC 59.655 45.833 0.00 0.00 39.08 3.36
181 182 4.101741 GTGGCTACTCCTCAATTAGTGGAT 59.898 45.833 0.00 0.00 39.08 3.41
182 183 3.451178 GTGGCTACTCCTCAATTAGTGGA 59.549 47.826 0.00 0.00 37.56 4.02
183 184 3.197766 TGTGGCTACTCCTCAATTAGTGG 59.802 47.826 0.64 0.00 35.56 4.00
184 185 4.471904 TGTGGCTACTCCTCAATTAGTG 57.528 45.455 0.64 0.00 35.56 2.74
191 192 3.052869 TCTCCTATTGTGGCTACTCCTCA 60.053 47.826 0.64 0.00 36.62 3.86
192 193 3.567397 TCTCCTATTGTGGCTACTCCTC 58.433 50.000 0.64 0.00 35.26 3.71
193 194 3.689872 TCTCCTATTGTGGCTACTCCT 57.310 47.619 0.64 0.00 35.26 3.69
194 195 3.070302 CCTTCTCCTATTGTGGCTACTCC 59.930 52.174 0.64 0.00 0.00 3.85
195 196 3.070302 CCCTTCTCCTATTGTGGCTACTC 59.930 52.174 0.64 0.00 0.00 2.59
196 197 3.041946 CCCTTCTCCTATTGTGGCTACT 58.958 50.000 0.64 0.00 0.00 2.57
197 198 3.039011 TCCCTTCTCCTATTGTGGCTAC 58.961 50.000 0.00 0.00 0.00 3.58
198 199 3.414759 TCCCTTCTCCTATTGTGGCTA 57.585 47.619 0.00 0.00 0.00 3.93
199 200 2.270434 TCCCTTCTCCTATTGTGGCT 57.730 50.000 0.00 0.00 0.00 4.75
200 201 2.924421 CTTCCCTTCTCCTATTGTGGC 58.076 52.381 0.00 0.00 0.00 5.01
201 202 2.507471 AGCTTCCCTTCTCCTATTGTGG 59.493 50.000 0.00 0.00 0.00 4.17
202 203 3.539604 CAGCTTCCCTTCTCCTATTGTG 58.460 50.000 0.00 0.00 0.00 3.33
203 204 2.092699 GCAGCTTCCCTTCTCCTATTGT 60.093 50.000 0.00 0.00 0.00 2.71
204 205 2.570135 GCAGCTTCCCTTCTCCTATTG 58.430 52.381 0.00 0.00 0.00 1.90
205 206 1.139853 CGCAGCTTCCCTTCTCCTATT 59.860 52.381 0.00 0.00 0.00 1.73
206 207 0.755686 CGCAGCTTCCCTTCTCCTAT 59.244 55.000 0.00 0.00 0.00 2.57
207 208 0.614979 ACGCAGCTTCCCTTCTCCTA 60.615 55.000 0.00 0.00 0.00 2.94
208 209 1.893919 GACGCAGCTTCCCTTCTCCT 61.894 60.000 0.00 0.00 0.00 3.69
209 210 1.448717 GACGCAGCTTCCCTTCTCC 60.449 63.158 0.00 0.00 0.00 3.71
210 211 0.739112 CAGACGCAGCTTCCCTTCTC 60.739 60.000 0.00 0.00 0.00 2.87
211 212 1.294780 CAGACGCAGCTTCCCTTCT 59.705 57.895 0.00 0.00 0.00 2.85
212 213 2.394563 GCAGACGCAGCTTCCCTTC 61.395 63.158 0.00 0.00 38.36 3.46
213 214 2.359230 GCAGACGCAGCTTCCCTT 60.359 61.111 0.00 0.00 38.36 3.95
214 215 4.749310 CGCAGACGCAGCTTCCCT 62.749 66.667 0.00 0.00 38.40 4.20
225 226 3.414700 CAAGTCACGGGCGCAGAC 61.415 66.667 10.83 11.50 0.00 3.51
240 241 1.070821 CTTCAATCTCGCAGACGCAA 58.929 50.000 0.00 0.00 39.84 4.85
241 242 0.737367 CCTTCAATCTCGCAGACGCA 60.737 55.000 0.00 0.00 39.84 5.24
242 243 0.458543 TCCTTCAATCTCGCAGACGC 60.459 55.000 0.00 0.00 39.84 5.19
243 244 1.133216 TCTCCTTCAATCTCGCAGACG 59.867 52.381 0.00 0.00 42.01 4.18
244 245 2.808244 CTCTCCTTCAATCTCGCAGAC 58.192 52.381 0.00 0.00 0.00 3.51
245 246 1.135915 GCTCTCCTTCAATCTCGCAGA 59.864 52.381 0.00 0.00 0.00 4.26
246 247 1.136695 AGCTCTCCTTCAATCTCGCAG 59.863 52.381 0.00 0.00 0.00 5.18
247 248 1.189752 AGCTCTCCTTCAATCTCGCA 58.810 50.000 0.00 0.00 0.00 5.10
248 249 3.243704 ACATAGCTCTCCTTCAATCTCGC 60.244 47.826 0.00 0.00 0.00 5.03
249 250 4.582701 ACATAGCTCTCCTTCAATCTCG 57.417 45.455 0.00 0.00 0.00 4.04
250 251 7.622893 AAAAACATAGCTCTCCTTCAATCTC 57.377 36.000 0.00 0.00 0.00 2.75
273 274 6.569179 AGCTTTCCTTCATTACGCTAAAAA 57.431 33.333 0.00 0.00 0.00 1.94
274 275 7.389607 ACTTAGCTTTCCTTCATTACGCTAAAA 59.610 33.333 0.00 0.00 37.83 1.52
275 276 6.877322 ACTTAGCTTTCCTTCATTACGCTAAA 59.123 34.615 0.00 0.00 37.83 1.85
276 277 6.403878 ACTTAGCTTTCCTTCATTACGCTAA 58.596 36.000 0.00 0.00 37.09 3.09
277 278 5.974108 ACTTAGCTTTCCTTCATTACGCTA 58.026 37.500 0.00 0.00 0.00 4.26
278 279 4.833390 ACTTAGCTTTCCTTCATTACGCT 58.167 39.130 0.00 0.00 0.00 5.07
279 280 4.870991 AGACTTAGCTTTCCTTCATTACGC 59.129 41.667 0.00 0.00 0.00 4.42
280 281 5.220491 GCAGACTTAGCTTTCCTTCATTACG 60.220 44.000 0.00 0.00 0.00 3.18
281 282 5.220491 CGCAGACTTAGCTTTCCTTCATTAC 60.220 44.000 0.00 0.00 0.00 1.89
282 283 4.870426 CGCAGACTTAGCTTTCCTTCATTA 59.130 41.667 0.00 0.00 0.00 1.90
283 284 3.686726 CGCAGACTTAGCTTTCCTTCATT 59.313 43.478 0.00 0.00 0.00 2.57
284 285 3.265791 CGCAGACTTAGCTTTCCTTCAT 58.734 45.455 0.00 0.00 0.00 2.57
285 286 2.612972 CCGCAGACTTAGCTTTCCTTCA 60.613 50.000 0.00 0.00 0.00 3.02
286 287 2.003301 CCGCAGACTTAGCTTTCCTTC 58.997 52.381 0.00 0.00 0.00 3.46
287 288 1.339151 CCCGCAGACTTAGCTTTCCTT 60.339 52.381 0.00 0.00 0.00 3.36
288 289 0.250513 CCCGCAGACTTAGCTTTCCT 59.749 55.000 0.00 0.00 0.00 3.36
289 290 0.036294 ACCCGCAGACTTAGCTTTCC 60.036 55.000 0.00 0.00 0.00 3.13
290 291 1.464997 CAACCCGCAGACTTAGCTTTC 59.535 52.381 0.00 0.00 0.00 2.62
291 292 1.202770 ACAACCCGCAGACTTAGCTTT 60.203 47.619 0.00 0.00 0.00 3.51
292 293 0.396811 ACAACCCGCAGACTTAGCTT 59.603 50.000 0.00 0.00 0.00 3.74
293 294 0.320771 CACAACCCGCAGACTTAGCT 60.321 55.000 0.00 0.00 0.00 3.32
294 295 1.912371 GCACAACCCGCAGACTTAGC 61.912 60.000 0.00 0.00 0.00 3.09
295 296 1.626654 CGCACAACCCGCAGACTTAG 61.627 60.000 0.00 0.00 0.00 2.18
296 297 1.666553 CGCACAACCCGCAGACTTA 60.667 57.895 0.00 0.00 0.00 2.24
297 298 2.731691 ATCGCACAACCCGCAGACTT 62.732 55.000 0.00 0.00 0.00 3.01
298 299 3.240134 ATCGCACAACCCGCAGACT 62.240 57.895 0.00 0.00 0.00 3.24
299 300 2.740714 GATCGCACAACCCGCAGAC 61.741 63.158 0.00 0.00 0.00 3.51
300 301 2.434185 GATCGCACAACCCGCAGA 60.434 61.111 0.00 0.00 0.00 4.26
301 302 3.499737 GGATCGCACAACCCGCAG 61.500 66.667 0.00 0.00 0.00 5.18
305 306 3.134127 GCAGGGATCGCACAACCC 61.134 66.667 12.83 0.00 43.55 4.11
306 307 1.718757 GATGCAGGGATCGCACAACC 61.719 60.000 12.83 3.36 43.35 3.77
307 308 1.718757 GGATGCAGGGATCGCACAAC 61.719 60.000 12.83 8.29 43.35 3.32
308 309 1.451927 GGATGCAGGGATCGCACAA 60.452 57.895 12.83 0.00 43.35 3.33
309 310 2.190313 GGATGCAGGGATCGCACA 59.810 61.111 12.83 10.02 43.35 4.57
310 311 2.592861 GGGATGCAGGGATCGCAC 60.593 66.667 12.83 4.27 43.35 5.34
311 312 3.877450 GGGGATGCAGGGATCGCA 61.877 66.667 17.10 4.29 44.94 5.10
312 313 4.996434 CGGGGATGCAGGGATCGC 62.996 72.222 8.94 8.94 35.16 4.58
313 314 4.320456 CCGGGGATGCAGGGATCG 62.320 72.222 0.00 0.00 0.00 3.69
314 315 4.650377 GCCGGGGATGCAGGGATC 62.650 72.222 2.18 0.00 0.00 3.36
335 336 4.537433 GTAGCCAGCCCAGCGAGG 62.537 72.222 0.00 0.00 34.64 4.63
336 337 1.748329 TATGTAGCCAGCCCAGCGAG 61.748 60.000 0.00 0.00 34.64 5.03
337 338 1.121407 ATATGTAGCCAGCCCAGCGA 61.121 55.000 0.00 0.00 34.64 4.93
338 339 0.952497 CATATGTAGCCAGCCCAGCG 60.952 60.000 0.00 0.00 34.64 5.18
339 340 1.239968 GCATATGTAGCCAGCCCAGC 61.240 60.000 4.29 0.00 0.00 4.85
340 341 0.109153 TGCATATGTAGCCAGCCCAG 59.891 55.000 4.29 0.00 0.00 4.45
341 342 0.773014 ATGCATATGTAGCCAGCCCA 59.227 50.000 0.00 0.00 0.00 5.36
342 343 1.171308 CATGCATATGTAGCCAGCCC 58.829 55.000 0.00 0.00 0.00 5.19
343 344 0.524862 GCATGCATATGTAGCCAGCC 59.475 55.000 14.21 0.00 36.65 4.85
344 345 0.524862 GGCATGCATATGTAGCCAGC 59.475 55.000 21.36 13.17 44.59 4.85
347 348 1.466167 CGAAGGCATGCATATGTAGCC 59.534 52.381 21.36 20.56 45.54 3.93
348 349 1.466167 CCGAAGGCATGCATATGTAGC 59.534 52.381 21.36 0.00 46.14 3.58
371 372 2.283894 CAAGTTGAAGGGGCCCCC 60.284 66.667 38.68 23.99 45.90 5.40
372 373 2.283894 CCAAGTTGAAGGGGCCCC 60.284 66.667 35.90 35.90 0.00 5.80
373 374 2.283894 CCCAAGTTGAAGGGGCCC 60.284 66.667 17.12 17.12 41.58 5.80
377 378 2.283894 GGCCCCCAAGTTGAAGGG 60.284 66.667 20.99 20.99 45.04 3.95
378 379 2.283894 GGGCCCCCAAGTTGAAGG 60.284 66.667 12.23 5.61 35.81 3.46
379 380 2.676471 CGGGCCCCCAAGTTGAAG 60.676 66.667 18.66 0.00 35.37 3.02
380 381 4.293671 CCGGGCCCCCAAGTTGAA 62.294 66.667 18.66 0.00 35.37 2.69
421 422 4.777854 TAGCAGAGCCGGCCCTGA 62.778 66.667 38.75 18.53 32.37 3.86
422 423 4.232878 CTAGCAGAGCCGGCCCTG 62.233 72.222 31.77 31.77 0.00 4.45
423 424 3.375443 TACTAGCAGAGCCGGCCCT 62.375 63.158 26.15 15.94 0.00 5.19
424 425 2.838225 TACTAGCAGAGCCGGCCC 60.838 66.667 26.15 12.96 0.00 5.80
425 426 1.182385 ATCTACTAGCAGAGCCGGCC 61.182 60.000 26.15 15.34 0.00 6.13
426 427 1.535833 TATCTACTAGCAGAGCCGGC 58.464 55.000 21.89 21.89 0.00 6.13
427 428 4.585955 TTTTATCTACTAGCAGAGCCGG 57.414 45.455 0.00 0.00 0.00 6.13
428 429 7.539436 TCATATTTTATCTACTAGCAGAGCCG 58.461 38.462 0.00 0.00 0.00 5.52
429 430 9.712305 TTTCATATTTTATCTACTAGCAGAGCC 57.288 33.333 0.00 0.00 0.00 4.70
453 454 9.865321 CATTTGATCCATCATGAAAAGTAGTTT 57.135 29.630 0.00 0.00 36.56 2.66
454 455 9.246670 TCATTTGATCCATCATGAAAAGTAGTT 57.753 29.630 0.00 0.00 36.56 2.24
455 456 8.812513 TCATTTGATCCATCATGAAAAGTAGT 57.187 30.769 0.00 0.00 36.56 2.73
517 518 2.096248 TGCAGGTTTGACCGAGTTTTT 58.904 42.857 0.00 0.00 44.90 1.94
518 519 1.404035 GTGCAGGTTTGACCGAGTTTT 59.596 47.619 0.00 0.00 44.90 2.43
519 520 1.021968 GTGCAGGTTTGACCGAGTTT 58.978 50.000 0.00 0.00 44.90 2.66
520 521 0.180406 AGTGCAGGTTTGACCGAGTT 59.820 50.000 0.00 0.00 44.90 3.01
521 522 0.249911 GAGTGCAGGTTTGACCGAGT 60.250 55.000 0.00 0.00 44.90 4.18
522 523 1.284982 CGAGTGCAGGTTTGACCGAG 61.285 60.000 0.00 0.00 44.90 4.63
523 524 1.300620 CGAGTGCAGGTTTGACCGA 60.301 57.895 0.00 0.00 44.90 4.69
524 525 1.157870 AACGAGTGCAGGTTTGACCG 61.158 55.000 0.00 0.00 44.90 4.79
525 526 1.021968 AAACGAGTGCAGGTTTGACC 58.978 50.000 9.04 0.00 38.99 4.02
529 530 2.038387 AGTCAAACGAGTGCAGGTTT 57.962 45.000 5.00 5.00 36.85 3.27
530 531 2.038387 AAGTCAAACGAGTGCAGGTT 57.962 45.000 0.00 0.00 0.00 3.50
531 532 1.940613 GAAAGTCAAACGAGTGCAGGT 59.059 47.619 0.00 0.00 0.00 4.00
532 533 1.070577 CGAAAGTCAAACGAGTGCAGG 60.071 52.381 0.00 0.00 0.00 4.85
533 534 1.858458 TCGAAAGTCAAACGAGTGCAG 59.142 47.619 0.00 0.00 0.00 4.41
534 535 1.929230 TCGAAAGTCAAACGAGTGCA 58.071 45.000 0.00 0.00 0.00 4.57
535 536 3.313274 TTTCGAAAGTCAAACGAGTGC 57.687 42.857 6.47 0.00 37.36 4.40
561 562 9.774413 CCTCCGTTTCTTTATATAAGGTGTATT 57.226 33.333 4.68 0.00 0.00 1.89
562 563 7.876582 GCCTCCGTTTCTTTATATAAGGTGTAT 59.123 37.037 4.68 0.00 0.00 2.29
563 564 7.212274 GCCTCCGTTTCTTTATATAAGGTGTA 58.788 38.462 4.68 0.00 0.00 2.90
564 565 6.053650 GCCTCCGTTTCTTTATATAAGGTGT 58.946 40.000 4.68 0.00 0.00 4.16
565 566 5.469084 GGCCTCCGTTTCTTTATATAAGGTG 59.531 44.000 0.00 0.00 0.00 4.00
566 567 5.131475 TGGCCTCCGTTTCTTTATATAAGGT 59.869 40.000 3.32 0.00 0.00 3.50
567 568 5.617252 TGGCCTCCGTTTCTTTATATAAGG 58.383 41.667 3.32 0.00 0.00 2.69
568 569 6.710744 ACATGGCCTCCGTTTCTTTATATAAG 59.289 38.462 3.32 0.00 0.00 1.73
569 570 6.597562 ACATGGCCTCCGTTTCTTTATATAA 58.402 36.000 3.32 0.00 0.00 0.98
570 571 6.182507 ACATGGCCTCCGTTTCTTTATATA 57.817 37.500 3.32 0.00 0.00 0.86
571 572 5.048846 ACATGGCCTCCGTTTCTTTATAT 57.951 39.130 3.32 0.00 0.00 0.86
572 573 4.497291 ACATGGCCTCCGTTTCTTTATA 57.503 40.909 3.32 0.00 0.00 0.98
573 574 3.366052 ACATGGCCTCCGTTTCTTTAT 57.634 42.857 3.32 0.00 0.00 1.40
574 575 2.871096 ACATGGCCTCCGTTTCTTTA 57.129 45.000 3.32 0.00 0.00 1.85
575 576 1.995376 AACATGGCCTCCGTTTCTTT 58.005 45.000 3.32 0.00 0.00 2.52
576 577 1.886542 GAAACATGGCCTCCGTTTCTT 59.113 47.619 25.31 6.49 43.23 2.52
577 578 1.202879 TGAAACATGGCCTCCGTTTCT 60.203 47.619 29.00 10.07 45.55 2.52
578 579 1.200020 CTGAAACATGGCCTCCGTTTC 59.800 52.381 25.61 25.61 45.55 2.78
579 580 1.202879 TCTGAAACATGGCCTCCGTTT 60.203 47.619 14.87 14.87 35.63 3.60
580 581 0.400213 TCTGAAACATGGCCTCCGTT 59.600 50.000 3.32 1.22 0.00 4.44
581 582 0.400213 TTCTGAAACATGGCCTCCGT 59.600 50.000 3.32 0.00 0.00 4.69
582 583 1.533625 TTTCTGAAACATGGCCTCCG 58.466 50.000 3.32 0.00 0.00 4.63
583 584 3.157087 TCTTTTCTGAAACATGGCCTCC 58.843 45.455 3.32 0.00 0.00 4.30
584 585 4.853924 TTCTTTTCTGAAACATGGCCTC 57.146 40.909 3.32 0.00 0.00 4.70
585 586 5.612725 TTTTCTTTTCTGAAACATGGCCT 57.387 34.783 3.32 0.00 35.91 5.19
615 616 2.106683 GGCAATCACTCCCGAACCG 61.107 63.158 0.00 0.00 0.00 4.44
616 617 0.394352 ATGGCAATCACTCCCGAACC 60.394 55.000 0.00 0.00 0.00 3.62
617 618 2.325583 TATGGCAATCACTCCCGAAC 57.674 50.000 0.00 0.00 0.00 3.95
618 619 2.917933 CTTATGGCAATCACTCCCGAA 58.082 47.619 0.00 0.00 0.00 4.30
619 620 1.475034 GCTTATGGCAATCACTCCCGA 60.475 52.381 0.00 0.00 41.35 5.14
620 621 0.947244 GCTTATGGCAATCACTCCCG 59.053 55.000 0.00 0.00 41.35 5.14
621 622 1.133668 AGGCTTATGGCAATCACTCCC 60.134 52.381 4.95 0.00 44.01 4.30
622 623 1.952296 CAGGCTTATGGCAATCACTCC 59.048 52.381 4.95 0.00 44.01 3.85
623 624 2.615912 GTCAGGCTTATGGCAATCACTC 59.384 50.000 4.95 0.00 44.01 3.51
624 625 2.648059 GTCAGGCTTATGGCAATCACT 58.352 47.619 4.95 0.00 44.01 3.41
625 626 1.331756 CGTCAGGCTTATGGCAATCAC 59.668 52.381 4.95 0.00 44.01 3.06
626 627 1.667236 CGTCAGGCTTATGGCAATCA 58.333 50.000 4.95 0.00 44.01 2.57
627 628 0.308993 GCGTCAGGCTTATGGCAATC 59.691 55.000 4.95 0.00 44.01 2.67
628 629 2.408333 GCGTCAGGCTTATGGCAAT 58.592 52.632 4.95 0.00 44.01 3.56
629 630 3.903783 GCGTCAGGCTTATGGCAA 58.096 55.556 4.95 0.00 44.01 4.52
638 639 3.418068 GTGTGAGCAGCGTCAGGC 61.418 66.667 0.00 0.00 44.05 4.85
639 640 3.108289 CGTGTGAGCAGCGTCAGG 61.108 66.667 0.00 0.00 0.00 3.86
705 706 7.042051 TCGGGTGATAATTGAAAAAGATCGATC 60.042 37.037 17.91 17.91 0.00 3.69
757 758 8.556213 AAATTAATGGCCGTGATATATACGTT 57.444 30.769 0.00 2.59 39.76 3.99
758 759 9.309516 CTAAATTAATGGCCGTGATATATACGT 57.690 33.333 0.00 0.00 39.76 3.57
759 760 8.273557 GCTAAATTAATGGCCGTGATATATACG 58.726 37.037 0.00 5.30 40.98 3.06
760 761 8.273557 CGCTAAATTAATGGCCGTGATATATAC 58.726 37.037 0.00 0.00 0.00 1.47
761 762 7.982919 ACGCTAAATTAATGGCCGTGATATATA 59.017 33.333 0.00 0.00 0.00 0.86
762 763 6.821665 ACGCTAAATTAATGGCCGTGATATAT 59.178 34.615 0.00 0.00 0.00 0.86
763 764 6.167685 ACGCTAAATTAATGGCCGTGATATA 58.832 36.000 0.00 0.00 0.00 0.86
764 765 5.001232 ACGCTAAATTAATGGCCGTGATAT 58.999 37.500 0.00 0.00 0.00 1.63
765 766 4.382291 ACGCTAAATTAATGGCCGTGATA 58.618 39.130 0.00 0.00 0.00 2.15
766 767 3.211045 ACGCTAAATTAATGGCCGTGAT 58.789 40.909 0.00 0.00 0.00 3.06
767 768 2.634600 ACGCTAAATTAATGGCCGTGA 58.365 42.857 0.00 0.00 0.00 4.35
768 769 3.414549 AACGCTAAATTAATGGCCGTG 57.585 42.857 0.00 0.00 0.00 4.94
769 770 3.940221 TGTAACGCTAAATTAATGGCCGT 59.060 39.130 0.00 0.00 0.00 5.68
770 771 4.276460 GTGTAACGCTAAATTAATGGCCG 58.724 43.478 0.00 0.00 0.00 6.13
771 772 4.603985 GGTGTAACGCTAAATTAATGGCC 58.396 43.478 0.00 0.00 38.12 5.36
772 773 4.276460 CGGTGTAACGCTAAATTAATGGC 58.724 43.478 0.00 0.00 38.12 4.40
788 789 3.384146 TCCGATTAATTAGTGGCGGTGTA 59.616 43.478 9.91 0.00 39.70 2.90
789 790 2.168936 TCCGATTAATTAGTGGCGGTGT 59.831 45.455 9.91 0.00 39.70 4.16
806 807 0.543410 TTGCCAACTACTCCCTCCGA 60.543 55.000 0.00 0.00 0.00 4.55
905 914 2.544844 TCTATTCGAACCCCACCTCT 57.455 50.000 0.00 0.00 0.00 3.69
914 923 2.971915 CCGCGTGTCTATCTATTCGAAC 59.028 50.000 4.92 0.00 0.00 3.95
944 953 0.898320 CGGAAGTGATCACAGAGGGT 59.102 55.000 27.02 2.75 0.00 4.34
945 954 1.135915 CTCGGAAGTGATCACAGAGGG 59.864 57.143 27.02 11.66 0.00 4.30
1074 1255 1.395826 GGACGAGGAGGGAGGTGATG 61.396 65.000 0.00 0.00 0.00 3.07
1114 1295 6.587990 AGAGATTTGTGTTCGAAGTAGTCATG 59.412 38.462 0.00 0.00 0.00 3.07
1116 1297 6.085555 AGAGATTTGTGTTCGAAGTAGTCA 57.914 37.500 0.00 0.00 0.00 3.41
1121 1302 4.991687 GGAGAAGAGATTTGTGTTCGAAGT 59.008 41.667 0.00 0.00 0.00 3.01
1128 1309 5.250313 AGGAATCTGGAGAAGAGATTTGTGT 59.750 40.000 0.00 0.00 39.72 3.72
1131 1312 6.095160 CCAAAGGAATCTGGAGAAGAGATTTG 59.905 42.308 0.00 0.00 39.72 2.32
1138 1319 4.219288 CCAAACCAAAGGAATCTGGAGAAG 59.781 45.833 0.00 0.00 36.49 2.85
1302 1484 3.003689 CCAAAAGTCAAGGCACTACACAG 59.996 47.826 0.00 0.00 38.49 3.66
1410 1596 3.558505 CGCAAAATCCAGTTCAGTTGAG 58.441 45.455 0.00 0.00 0.00 3.02
1411 1597 2.293122 CCGCAAAATCCAGTTCAGTTGA 59.707 45.455 0.00 0.00 0.00 3.18
1412 1598 2.664916 CCGCAAAATCCAGTTCAGTTG 58.335 47.619 0.00 0.00 0.00 3.16
1413 1599 1.000274 GCCGCAAAATCCAGTTCAGTT 60.000 47.619 0.00 0.00 0.00 3.16
1414 1600 0.598065 GCCGCAAAATCCAGTTCAGT 59.402 50.000 0.00 0.00 0.00 3.41
1415 1601 0.597568 TGCCGCAAAATCCAGTTCAG 59.402 50.000 0.00 0.00 0.00 3.02
1416 1602 1.035923 TTGCCGCAAAATCCAGTTCA 58.964 45.000 2.50 0.00 0.00 3.18
1417 1603 2.147436 TTTGCCGCAAAATCCAGTTC 57.853 45.000 16.17 0.00 29.89 3.01
1418 1604 2.807392 CAATTTGCCGCAAAATCCAGTT 59.193 40.909 21.80 8.28 36.90 3.16
1419 1605 2.036992 TCAATTTGCCGCAAAATCCAGT 59.963 40.909 21.80 2.13 36.90 4.00
1427 1613 1.146637 GCACAATCAATTTGCCGCAA 58.853 45.000 0.38 0.38 39.03 4.85
1442 1628 1.579084 GGGAACGCATAAACCGCACA 61.579 55.000 0.00 0.00 0.00 4.57
1455 1641 3.870633 AACTGAGCTAAGTAGGGAACG 57.129 47.619 3.46 0.00 0.00 3.95
1510 1704 3.598019 AGAATTACGACCGGCAGTTAA 57.402 42.857 0.00 0.00 0.00 2.01
1571 1765 8.880244 TGATATGGTGGTACTTTCTGCTATAAT 58.120 33.333 0.00 0.00 0.00 1.28
1573 1767 7.039011 CCTGATATGGTGGTACTTTCTGCTATA 60.039 40.741 0.00 0.00 0.00 1.31
1574 1768 6.239714 CCTGATATGGTGGTACTTTCTGCTAT 60.240 42.308 0.00 0.00 0.00 2.97
1628 1822 8.567948 CCCTTGTTCAATAATTTGCTATATCGT 58.432 33.333 0.00 0.00 32.61 3.73
1698 1892 2.813754 CCAACAGGAATTCAGCTCGAAA 59.186 45.455 7.93 0.00 37.12 3.46
1715 1909 9.203421 CAACTTTACAAATATCCTTTTCCCAAC 57.797 33.333 0.00 0.00 0.00 3.77
1719 1913 9.406828 GACACAACTTTACAAATATCCTTTTCC 57.593 33.333 0.00 0.00 0.00 3.13
1724 1918 6.659242 CCTGGACACAACTTTACAAATATCCT 59.341 38.462 0.00 0.00 0.00 3.24
1733 1927 3.564225 CCTGAACCTGGACACAACTTTAC 59.436 47.826 0.00 0.00 0.00 2.01
1741 1935 2.561478 TAAAGCCTGAACCTGGACAC 57.439 50.000 0.00 0.00 0.00 3.67
1749 1943 5.705609 TTTCCTTGTCATAAAGCCTGAAC 57.294 39.130 0.00 0.00 0.00 3.18
1789 1983 8.562892 ACTTTCAGTGACATAAACAGAATGAAG 58.437 33.333 0.00 0.00 39.69 3.02
1919 2250 4.142578 CCATCGATTCTAGGTATCAGGACG 60.143 50.000 0.00 0.00 0.00 4.79
1963 2294 1.402984 GCGAGACCTGACGACAAATCT 60.403 52.381 0.00 0.00 0.00 2.40
2138 2480 8.203485 TCTTTTTACATGAAAACAGCAGGAAAT 58.797 29.630 0.00 0.00 36.74 2.17
2167 2510 3.146847 GGTAGGACTGAAAACAACAGGG 58.853 50.000 0.00 0.00 39.38 4.45
2171 2514 3.547746 TGGTGGTAGGACTGAAAACAAC 58.452 45.455 0.00 0.00 0.00 3.32
2182 2525 7.865530 TTATATAGCTTGATTGGTGGTAGGA 57.134 36.000 0.00 0.00 0.00 2.94
2233 2580 1.547372 TCTTCGACTAAAGGGGTTCCG 59.453 52.381 0.00 0.00 38.33 4.30
2239 2594 3.679824 ACAACCTCTTCGACTAAAGGG 57.320 47.619 6.54 0.00 32.97 3.95
2256 2611 8.564574 GTGAATGACTAACATCAAGGTTTACAA 58.435 33.333 0.00 0.00 38.38 2.41
2271 2626 3.568007 GGCTTTGGTGTGTGAATGACTAA 59.432 43.478 0.00 0.00 0.00 2.24
2314 2675 8.825667 AAATTTCATGTACAATTGGTTGGTAC 57.174 30.769 10.83 3.45 39.70 3.34
2325 2686 9.430623 TCGATACTTCAGAAATTTCATGTACAA 57.569 29.630 19.99 5.80 0.00 2.41
2330 2691 9.647679 CATTCTCGATACTTCAGAAATTTCATG 57.352 33.333 19.99 14.22 30.07 3.07
2674 3037 1.645034 CATAGCAACCGACCAGTCTG 58.355 55.000 0.00 0.00 0.00 3.51
2680 3043 1.084289 GTGTTCCATAGCAACCGACC 58.916 55.000 0.00 0.00 0.00 4.79
2872 3244 8.941977 TGACATGTCAATTTTATAGTACGCTTT 58.058 29.630 26.02 0.00 36.53 3.51
2981 3358 9.553418 AATTTACAATTCAGCAACAAAACAAAC 57.447 25.926 0.00 0.00 0.00 2.93
3226 3617 0.032267 GGCCTCCGGAAGAGAATACG 59.968 60.000 5.23 0.00 46.50 3.06
3245 3636 6.471233 TCCATATCAAGTCTTAGAGTGGTG 57.529 41.667 0.00 0.00 0.00 4.17
3536 3928 3.693085 GCTTCAAGCCATTCTTCTCATCA 59.307 43.478 0.00 0.00 34.48 3.07
3572 3964 0.179097 GTGAGCTCGATGGGTCCTTC 60.179 60.000 9.64 0.00 33.34 3.46
3686 4078 3.305709 GCATACTCCGGCATGCTTA 57.694 52.632 18.92 2.23 43.38 3.09
3789 4181 2.350772 CCGAGAACTCAAACAACATGGC 60.351 50.000 0.00 0.00 0.00 4.40
3925 4317 1.968493 TCAGTTCTGGTCACTACACCC 59.032 52.381 0.00 0.00 35.26 4.61
3947 4339 5.234972 TGATTTTCCGAATGAGATCATGTCG 59.765 40.000 14.79 14.79 36.56 4.35
3953 4345 7.019774 TGAACATGATTTTCCGAATGAGATC 57.980 36.000 0.00 0.00 0.00 2.75
3963 4355 4.524328 AGACACCCTTGAACATGATTTTCC 59.476 41.667 0.00 0.00 0.00 3.13
4024 4417 6.408035 TCAATATTTTGGCAAGCATGTGAAT 58.592 32.000 0.00 0.00 33.44 2.57
4095 4488 1.536149 CTCTCCGATCGTTTCGTGTC 58.464 55.000 15.09 0.00 46.65 3.67
4140 4533 9.840427 TCAACCGAATCTTTTGAGATTTATTTC 57.160 29.630 3.43 0.00 38.50 2.17
4161 4554 9.859427 TGATTAGATTGTTCATTGAAATCAACC 57.141 29.630 11.70 1.35 38.86 3.77
4189 4582 3.181483 GGGACATGATGAATTGCCACTTC 60.181 47.826 0.00 0.00 0.00 3.01
4195 4588 3.872511 TGTTGGGACATGATGAATTGC 57.127 42.857 0.00 0.00 39.30 3.56
4226 4619 5.530915 TGTCGGGATCAATTTGATGTAATCC 59.469 40.000 16.41 11.29 44.73 3.01
4236 4629 4.991056 CGTCTCATATGTCGGGATCAATTT 59.009 41.667 1.90 0.00 0.00 1.82
4248 4641 4.262207 CCATGTTCTAGCCGTCTCATATGT 60.262 45.833 1.90 0.00 0.00 2.29
4249 4642 4.240888 CCATGTTCTAGCCGTCTCATATG 58.759 47.826 0.00 0.00 0.00 1.78
4252 4646 2.111384 ACCATGTTCTAGCCGTCTCAT 58.889 47.619 0.00 0.00 0.00 2.90
4289 4687 1.066303 CGCTCCGCTAGATGACTCTTT 59.934 52.381 0.00 0.00 32.66 2.52
4335 4736 2.374525 ATGGCCCAGATACCGTGCA 61.375 57.895 0.00 0.00 0.00 4.57
4336 4737 1.893808 CATGGCCCAGATACCGTGC 60.894 63.158 0.00 0.00 36.22 5.34
4350 4751 1.745115 ACGAACCGGACATGCATGG 60.745 57.895 29.41 14.97 0.00 3.66
4389 4790 0.251916 TTGGGTGCCTAATCCGAGTG 59.748 55.000 0.00 0.00 0.00 3.51
4429 4830 1.522258 CACGCGTTTTGTACCGTACTT 59.478 47.619 10.22 0.00 33.73 2.24
4444 4845 0.999406 ACATTTCTCGGAATCACGCG 59.001 50.000 3.53 3.53 0.00 6.01
4449 4850 3.871594 CCTGGTACACATTTCTCGGAATC 59.128 47.826 0.00 0.00 0.00 2.52
4458 4860 0.112218 TGCTGGCCTGGTACACATTT 59.888 50.000 12.06 0.00 0.00 2.32
4481 4883 5.279809 GGAGCGGGATAGGAACATAAACATA 60.280 44.000 0.00 0.00 0.00 2.29
4482 4884 4.505039 GGAGCGGGATAGGAACATAAACAT 60.505 45.833 0.00 0.00 0.00 2.71
4483 4885 3.181458 GGAGCGGGATAGGAACATAAACA 60.181 47.826 0.00 0.00 0.00 2.83
4484 4886 3.071167 AGGAGCGGGATAGGAACATAAAC 59.929 47.826 0.00 0.00 0.00 2.01
4485 4887 3.071023 CAGGAGCGGGATAGGAACATAAA 59.929 47.826 0.00 0.00 0.00 1.40
4486 4888 2.632996 CAGGAGCGGGATAGGAACATAA 59.367 50.000 0.00 0.00 0.00 1.90
4600 5194 0.753262 GTCTCGCCTGATATGGGTGT 59.247 55.000 5.21 0.00 35.96 4.16
4602 5196 0.398522 TGGTCTCGCCTGATATGGGT 60.399 55.000 0.00 0.00 38.35 4.51
4607 5201 2.782222 GCGGTGGTCTCGCCTGATA 61.782 63.158 0.00 0.00 46.55 2.15
4608 5202 4.148825 GCGGTGGTCTCGCCTGAT 62.149 66.667 0.00 0.00 46.55 2.90
4690 5285 2.366266 GTGTTGTGTCTAGGTGGTGGTA 59.634 50.000 0.00 0.00 0.00 3.25
4711 5306 1.802960 GATATGGCACCTGCATCTTCG 59.197 52.381 0.00 0.00 44.36 3.79
4728 5323 2.194212 GTCTCCTCGCTGCCGGATA 61.194 63.158 5.05 0.00 34.56 2.59
4744 5339 4.222847 GGGGACTCGGCGATGGTC 62.223 72.222 17.90 17.90 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.