Multiple sequence alignment - TraesCS2A01G180100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G180100 chr2A 100.000 4464 0 0 1 4464 138873143 138877606 0.000000e+00 8244.0
1 TraesCS2A01G180100 chr2A 94.318 352 16 3 4 355 102503432 102503779 1.830000e-148 536.0
2 TraesCS2A01G180100 chr2A 93.239 355 20 3 1 355 107938837 107939187 1.840000e-143 520.0
3 TraesCS2A01G180100 chr2A 84.545 440 44 10 3460 3875 448554188 448553749 8.930000e-112 414.0
4 TraesCS2A01G180100 chr2A 88.554 332 18 9 2606 2934 642969402 642969716 7.000000e-103 385.0
5 TraesCS2A01G180100 chr4D 96.049 2202 64 10 1940 4135 286961238 286963422 0.000000e+00 3563.0
6 TraesCS2A01G180100 chr4D 94.829 1257 49 7 988 2237 286959991 286961238 0.000000e+00 1947.0
7 TraesCS2A01G180100 chr4D 93.179 689 40 3 354 1041 286959308 286959990 0.000000e+00 1005.0
8 TraesCS2A01G180100 chr4D 92.542 295 19 1 4171 4462 286963830 286964124 1.920000e-113 420.0
9 TraesCS2A01G180100 chr4D 92.647 68 3 2 1362 1427 270637820 270637753 3.680000e-16 97.1
10 TraesCS2A01G180100 chr4D 95.000 60 1 2 1370 1427 250327877 250327936 4.750000e-15 93.5
11 TraesCS2A01G180100 chr6B 94.684 2295 112 8 1830 4120 242239029 242236741 0.000000e+00 3554.0
12 TraesCS2A01G180100 chr6B 93.897 1868 107 5 2260 4124 242028457 242026594 0.000000e+00 2811.0
13 TraesCS2A01G180100 chr6B 87.750 1649 150 17 921 2531 462658404 462656770 0.000000e+00 1879.0
14 TraesCS2A01G180100 chr6B 91.779 815 56 6 990 1797 242239833 242239023 0.000000e+00 1123.0
15 TraesCS2A01G180100 chr6B 90.283 494 40 6 350 841 242257221 242256734 1.350000e-179 640.0
16 TraesCS2A01G180100 chr6B 92.486 346 23 2 2593 2935 462656770 462656425 4.010000e-135 492.0
17 TraesCS2A01G180100 chr6B 89.226 297 29 1 4171 4464 242026587 242026291 7.050000e-98 368.0
18 TraesCS2A01G180100 chr6B 89.226 297 29 1 4171 4464 242236740 242236444 7.050000e-98 368.0
19 TraesCS2A01G180100 chr6B 88.333 120 14 0 839 958 242240018 242239899 1.290000e-30 145.0
20 TraesCS2A01G180100 chr6B 92.473 93 6 1 1424 1515 637035138 637035046 1.010000e-26 132.0
21 TraesCS2A01G180100 chr1B 93.875 2204 113 10 1389 3584 132290966 132293155 0.000000e+00 3302.0
22 TraesCS2A01G180100 chr1B 94.556 496 21 5 3586 4077 132294436 132294929 0.000000e+00 761.0
23 TraesCS2A01G180100 chr1B 88.694 628 51 10 1517 2134 243757455 243758072 0.000000e+00 749.0
24 TraesCS2A01G180100 chr1B 91.722 302 19 4 4166 4464 132294929 132295227 8.930000e-112 414.0
25 TraesCS2A01G180100 chr3B 93.924 1909 98 7 1911 3816 645461102 645462995 0.000000e+00 2867.0
26 TraesCS2A01G180100 chr3B 87.518 689 55 14 354 1040 645460376 645461035 0.000000e+00 767.0
27 TraesCS2A01G180100 chr3B 94.822 309 14 2 3810 4117 645471631 645471938 8.680000e-132 481.0
28 TraesCS2A01G180100 chr3B 90.909 297 23 3 4171 4464 645471940 645472235 3.240000e-106 396.0
29 TraesCS2A01G180100 chr3B 84.884 172 13 6 4306 4464 414211093 414210922 1.290000e-35 161.0
30 TraesCS2A01G180100 chr1D 95.669 1547 63 3 2592 4135 80309168 80310713 0.000000e+00 2483.0
31 TraesCS2A01G180100 chr1D 96.491 570 20 0 2031 2600 80304902 80305471 0.000000e+00 942.0
32 TraesCS2A01G180100 chr1D 87.936 688 46 15 1389 2076 80304248 80304898 0.000000e+00 776.0
33 TraesCS2A01G180100 chr1D 92.145 331 19 3 988 1312 80303925 80304254 1.130000e-125 460.0
34 TraesCS2A01G180100 chr1D 91.582 297 21 2 4171 4464 80310715 80311010 1.490000e-109 407.0
35 TraesCS2A01G180100 chr1D 86.598 291 21 2 768 1040 80303633 80303923 5.610000e-79 305.0
36 TraesCS2A01G180100 chr1D 89.286 196 21 0 3908 4103 311762498 311762303 3.450000e-61 246.0
37 TraesCS2A01G180100 chr6A 90.361 1660 118 22 919 2548 222567746 222569393 0.000000e+00 2141.0
38 TraesCS2A01G180100 chr6A 94.366 355 17 2 1 355 209457269 209457620 3.930000e-150 542.0
39 TraesCS2A01G180100 chr6A 92.973 370 19 3 2570 2932 222569367 222569736 2.360000e-147 532.0
40 TraesCS2A01G180100 chr6A 94.220 346 16 3 4 349 209451748 209452089 3.960000e-145 525.0
41 TraesCS2A01G180100 chr6A 91.398 93 7 1 1423 1515 565473006 565472915 4.690000e-25 126.0
42 TraesCS2A01G180100 chr4B 88.088 638 52 11 1517 2134 207148859 207149492 0.000000e+00 736.0
43 TraesCS2A01G180100 chr7B 86.834 638 58 14 1518 2135 379919580 379920211 0.000000e+00 689.0
44 TraesCS2A01G180100 chr7B 81.720 651 62 19 1529 2157 312426999 312427614 1.440000e-134 490.0
45 TraesCS2A01G180100 chr7B 85.465 172 12 7 4306 4464 39844137 39844308 2.760000e-37 167.0
46 TraesCS2A01G180100 chr7B 93.590 78 3 2 3758 3835 447990413 447990488 1.010000e-21 115.0
47 TraesCS2A01G180100 chr3A 94.085 355 18 2 1 355 699945685 699946036 1.830000e-148 536.0
48 TraesCS2A01G180100 chr3A 92.329 365 20 7 4 366 620155131 620154773 3.080000e-141 512.0
49 TraesCS2A01G180100 chr4A 94.034 352 17 3 4 355 60303015 60302668 8.500000e-147 531.0
50 TraesCS2A01G180100 chr4A 91.892 259 21 0 2560 2818 426021286 426021028 3.280000e-96 363.0
51 TraesCS2A01G180100 chr4A 91.705 217 13 3 2217 2431 426023581 426023368 3.380000e-76 296.0
52 TraesCS2A01G180100 chr4A 87.600 250 26 1 544 793 417628022 417628266 7.310000e-73 285.0
53 TraesCS2A01G180100 chr5A 93.521 355 19 3 1 355 379853965 379854315 3.960000e-145 525.0
54 TraesCS2A01G180100 chr1A 93.466 352 19 4 4 355 64500384 64500037 1.840000e-143 520.0
55 TraesCS2A01G180100 chr3D 84.510 439 44 9 3460 3875 335213808 335214245 3.210000e-111 412.0
56 TraesCS2A01G180100 chr3D 83.333 414 41 8 1523 1917 238948693 238948289 1.530000e-94 357.0
57 TraesCS2A01G180100 chr5D 84.354 441 44 9 3460 3875 69676269 69676709 4.160000e-110 409.0
58 TraesCS2A01G180100 chr5D 87.131 373 31 9 917 1278 17477449 17477083 1.490000e-109 407.0
59 TraesCS2A01G180100 chr5D 86.595 373 31 8 917 1278 20760592 20760956 1.160000e-105 394.0
60 TraesCS2A01G180100 chr5D 95.000 60 1 2 1370 1427 17476208 17476149 4.750000e-15 93.5
61 TraesCS2A01G180100 chr5D 95.000 60 1 2 1370 1427 20761830 20761889 4.750000e-15 93.5
62 TraesCS2A01G180100 chr7A 81.165 515 68 16 354 865 615619875 615620363 1.950000e-103 387.0
63 TraesCS2A01G180100 chr7A 82.405 449 62 8 354 792 615590481 615590922 4.220000e-100 375.0
64 TraesCS2A01G180100 chr7A 92.754 138 9 1 2435 2572 685862590 685862454 9.790000e-47 198.0
65 TraesCS2A01G180100 chr7A 93.590 78 3 2 3758 3835 315303428 315303353 1.010000e-21 115.0
66 TraesCS2A01G180100 chr7D 89.286 196 21 0 3908 4103 571383443 571383248 3.450000e-61 246.0
67 TraesCS2A01G180100 chr6D 89.286 196 21 0 3908 4103 445408121 445408316 3.450000e-61 246.0
68 TraesCS2A01G180100 chr6D 92.473 93 6 1 1423 1515 422626672 422626581 1.010000e-26 132.0
69 TraesCS2A01G180100 chr2D 93.590 78 3 2 3758 3835 564598589 564598664 1.010000e-21 115.0
70 TraesCS2A01G180100 chr2B 90.741 54 3 2 354 406 591078316 591078264 2.230000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G180100 chr2A 138873143 138877606 4463 False 8244.000000 8244 100.000000 1 4464 1 chr2A.!!$F3 4463
1 TraesCS2A01G180100 chr4D 286959308 286964124 4816 False 1733.750000 3563 94.149750 354 4462 4 chr4D.!!$F2 4108
2 TraesCS2A01G180100 chr6B 242026291 242028457 2166 True 1589.500000 2811 91.561500 2260 4464 2 chr6B.!!$R3 2204
3 TraesCS2A01G180100 chr6B 242236444 242240018 3574 True 1297.500000 3554 91.005500 839 4464 4 chr6B.!!$R4 3625
4 TraesCS2A01G180100 chr6B 462656425 462658404 1979 True 1185.500000 1879 90.118000 921 2935 2 chr6B.!!$R5 2014
5 TraesCS2A01G180100 chr1B 132290966 132295227 4261 False 1492.333333 3302 93.384333 1389 4464 3 chr1B.!!$F2 3075
6 TraesCS2A01G180100 chr1B 243757455 243758072 617 False 749.000000 749 88.694000 1517 2134 1 chr1B.!!$F1 617
7 TraesCS2A01G180100 chr3B 645460376 645462995 2619 False 1817.000000 2867 90.721000 354 3816 2 chr3B.!!$F1 3462
8 TraesCS2A01G180100 chr3B 645471631 645472235 604 False 438.500000 481 92.865500 3810 4464 2 chr3B.!!$F2 654
9 TraesCS2A01G180100 chr1D 80303633 80311010 7377 False 895.500000 2483 91.736833 768 4464 6 chr1D.!!$F1 3696
10 TraesCS2A01G180100 chr6A 222567746 222569736 1990 False 1336.500000 2141 91.667000 919 2932 2 chr6A.!!$F3 2013
11 TraesCS2A01G180100 chr4B 207148859 207149492 633 False 736.000000 736 88.088000 1517 2134 1 chr4B.!!$F1 617
12 TraesCS2A01G180100 chr7B 379919580 379920211 631 False 689.000000 689 86.834000 1518 2135 1 chr7B.!!$F3 617
13 TraesCS2A01G180100 chr7B 312426999 312427614 615 False 490.000000 490 81.720000 1529 2157 1 chr7B.!!$F2 628
14 TraesCS2A01G180100 chr4A 426021028 426023581 2553 True 329.500000 363 91.798500 2217 2818 2 chr4A.!!$R2 601
15 TraesCS2A01G180100 chr5D 17476149 17477449 1300 True 250.250000 407 91.065500 917 1427 2 chr5D.!!$R1 510
16 TraesCS2A01G180100 chr5D 20760592 20761889 1297 False 243.750000 394 90.797500 917 1427 2 chr5D.!!$F2 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.106469 TCGGAGATGGACCAGGAGAG 60.106 60.000 0.00 0.0 0.00 3.20 F
631 633 0.249868 TCGACCTGCAGAACAACCAG 60.250 55.000 17.39 0.0 0.00 4.00 F
1088 1167 0.995803 TTGGCTGCATACCCAGGTTA 59.004 50.000 0.50 0.0 33.44 2.85 F
1658 2559 2.285743 GCCTGGGTCCCTCCTCTT 60.286 66.667 10.00 0.0 36.25 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 2576 0.246360 TGATGCCTCGACGAACATGT 59.754 50.000 15.53 0.0 0.00 3.21 R
1840 2745 1.073199 AGAACTGCAACTTCCCCGG 59.927 57.895 0.00 0.0 0.00 5.73 R
2690 9677 2.028930 ACGGGAGCTTAGACAGACTTTG 60.029 50.000 0.00 0.0 0.00 2.77 R
3469 10463 0.313672 TTCGGTTGACAAAGCATGGC 59.686 50.000 0.00 0.0 37.68 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 8.530804 TGAGACTAACCTATTAACCTAGAACC 57.469 38.462 0.00 0.00 0.00 3.62
124 125 7.562821 TGAGACTAACCTATTAACCTAGAACCC 59.437 40.741 0.00 0.00 0.00 4.11
125 126 7.425003 AGACTAACCTATTAACCTAGAACCCA 58.575 38.462 0.00 0.00 0.00 4.51
126 127 7.902941 AGACTAACCTATTAACCTAGAACCCAA 59.097 37.037 0.00 0.00 0.00 4.12
127 128 8.634188 ACTAACCTATTAACCTAGAACCCAAT 57.366 34.615 0.00 0.00 0.00 3.16
128 129 8.491958 ACTAACCTATTAACCTAGAACCCAATG 58.508 37.037 0.00 0.00 0.00 2.82
129 130 5.691896 ACCTATTAACCTAGAACCCAATGC 58.308 41.667 0.00 0.00 0.00 3.56
130 131 5.070685 CCTATTAACCTAGAACCCAATGCC 58.929 45.833 0.00 0.00 0.00 4.40
131 132 4.601406 ATTAACCTAGAACCCAATGCCA 57.399 40.909 0.00 0.00 0.00 4.92
132 133 2.990740 AACCTAGAACCCAATGCCAA 57.009 45.000 0.00 0.00 0.00 4.52
133 134 3.473113 AACCTAGAACCCAATGCCAAT 57.527 42.857 0.00 0.00 0.00 3.16
134 135 3.473113 ACCTAGAACCCAATGCCAATT 57.527 42.857 0.00 0.00 0.00 2.32
135 136 3.790126 ACCTAGAACCCAATGCCAATTT 58.210 40.909 0.00 0.00 0.00 1.82
136 137 3.769300 ACCTAGAACCCAATGCCAATTTC 59.231 43.478 0.00 0.00 0.00 2.17
137 138 4.026052 CCTAGAACCCAATGCCAATTTCT 58.974 43.478 0.00 0.00 0.00 2.52
138 139 3.967332 AGAACCCAATGCCAATTTCTG 57.033 42.857 0.00 0.00 0.00 3.02
139 140 3.242011 AGAACCCAATGCCAATTTCTGT 58.758 40.909 0.00 0.00 0.00 3.41
140 141 3.647590 AGAACCCAATGCCAATTTCTGTT 59.352 39.130 0.00 0.00 0.00 3.16
141 142 4.102996 AGAACCCAATGCCAATTTCTGTTT 59.897 37.500 0.00 0.00 0.00 2.83
142 143 4.436113 ACCCAATGCCAATTTCTGTTTT 57.564 36.364 0.00 0.00 0.00 2.43
143 144 4.790937 ACCCAATGCCAATTTCTGTTTTT 58.209 34.783 0.00 0.00 0.00 1.94
173 174 9.273016 TCTTGTTTTAGAGTATCACAGAAAAGG 57.727 33.333 0.00 0.00 37.82 3.11
174 175 9.273016 CTTGTTTTAGAGTATCACAGAAAAGGA 57.727 33.333 0.00 0.00 37.82 3.36
175 176 9.621629 TTGTTTTAGAGTATCACAGAAAAGGAA 57.378 29.630 0.00 0.00 37.82 3.36
176 177 9.621629 TGTTTTAGAGTATCACAGAAAAGGAAA 57.378 29.630 0.00 0.00 37.82 3.13
181 182 8.924511 AGAGTATCACAGAAAAGGAAAAATCA 57.075 30.769 0.00 0.00 37.82 2.57
182 183 9.354673 AGAGTATCACAGAAAAGGAAAAATCAA 57.645 29.630 0.00 0.00 37.82 2.57
183 184 9.965824 GAGTATCACAGAAAAGGAAAAATCAAA 57.034 29.630 0.00 0.00 33.17 2.69
184 185 9.750125 AGTATCACAGAAAAGGAAAAATCAAAC 57.250 29.630 0.00 0.00 0.00 2.93
185 186 7.698836 ATCACAGAAAAGGAAAAATCAAACG 57.301 32.000 0.00 0.00 0.00 3.60
186 187 6.039616 TCACAGAAAAGGAAAAATCAAACGG 58.960 36.000 0.00 0.00 0.00 4.44
187 188 6.039616 CACAGAAAAGGAAAAATCAAACGGA 58.960 36.000 0.00 0.00 0.00 4.69
188 189 6.198966 CACAGAAAAGGAAAAATCAAACGGAG 59.801 38.462 0.00 0.00 0.00 4.63
190 191 6.417930 CAGAAAAGGAAAAATCAAACGGAGTC 59.582 38.462 0.00 0.00 45.00 3.36
191 192 4.848562 AAGGAAAAATCAAACGGAGTCC 57.151 40.909 0.00 0.00 45.00 3.85
192 193 3.827722 AGGAAAAATCAAACGGAGTCCA 58.172 40.909 10.49 0.00 45.00 4.02
193 194 4.211920 AGGAAAAATCAAACGGAGTCCAA 58.788 39.130 10.49 0.00 45.00 3.53
194 195 4.832823 AGGAAAAATCAAACGGAGTCCAAT 59.167 37.500 10.49 0.00 45.00 3.16
195 196 5.304357 AGGAAAAATCAAACGGAGTCCAATT 59.696 36.000 10.49 0.00 45.00 2.32
196 197 5.405269 GGAAAAATCAAACGGAGTCCAATTG 59.595 40.000 10.49 13.13 45.00 2.32
197 198 5.782893 AAAATCAAACGGAGTCCAATTGA 57.217 34.783 22.22 22.22 45.00 2.57
198 199 4.766404 AATCAAACGGAGTCCAATTGAC 57.234 40.909 22.35 3.53 45.00 3.18
199 200 2.500229 TCAAACGGAGTCCAATTGACC 58.500 47.619 18.18 4.16 45.00 4.02
200 201 2.105821 TCAAACGGAGTCCAATTGACCT 59.894 45.455 18.18 1.47 45.00 3.85
201 202 2.185004 AACGGAGTCCAATTGACCTG 57.815 50.000 10.49 5.67 45.00 4.00
202 203 1.348064 ACGGAGTCCAATTGACCTGA 58.652 50.000 10.49 0.00 45.68 3.86
203 204 1.697432 ACGGAGTCCAATTGACCTGAA 59.303 47.619 10.49 0.00 45.68 3.02
204 205 2.105821 ACGGAGTCCAATTGACCTGAAA 59.894 45.455 10.49 0.00 45.68 2.69
205 206 2.484264 CGGAGTCCAATTGACCTGAAAC 59.516 50.000 10.49 0.00 45.68 2.78
206 207 3.756117 GGAGTCCAATTGACCTGAAACT 58.244 45.455 7.12 0.00 45.68 2.66
207 208 4.145052 GGAGTCCAATTGACCTGAAACTT 58.855 43.478 7.12 0.00 45.68 2.66
208 209 4.584743 GGAGTCCAATTGACCTGAAACTTT 59.415 41.667 7.12 0.00 45.68 2.66
209 210 5.768164 GGAGTCCAATTGACCTGAAACTTTA 59.232 40.000 7.12 0.00 45.68 1.85
210 211 6.294010 GGAGTCCAATTGACCTGAAACTTTAC 60.294 42.308 7.12 0.00 45.68 2.01
211 212 5.238650 AGTCCAATTGACCTGAAACTTTACG 59.761 40.000 7.12 0.00 45.68 3.18
212 213 4.517453 TCCAATTGACCTGAAACTTTACGG 59.483 41.667 7.12 0.00 0.00 4.02
213 214 4.517453 CCAATTGACCTGAAACTTTACGGA 59.483 41.667 7.12 0.00 0.00 4.69
214 215 5.009210 CCAATTGACCTGAAACTTTACGGAA 59.991 40.000 7.12 0.00 0.00 4.30
215 216 5.684550 ATTGACCTGAAACTTTACGGAAC 57.315 39.130 0.00 0.00 0.00 3.62
216 217 4.411256 TGACCTGAAACTTTACGGAACT 57.589 40.909 0.00 0.00 0.00 3.01
217 218 4.773013 TGACCTGAAACTTTACGGAACTT 58.227 39.130 0.00 0.00 0.00 2.66
218 219 5.916318 TGACCTGAAACTTTACGGAACTTA 58.084 37.500 0.00 0.00 0.00 2.24
219 220 6.527423 TGACCTGAAACTTTACGGAACTTAT 58.473 36.000 0.00 0.00 0.00 1.73
220 221 6.993902 TGACCTGAAACTTTACGGAACTTATT 59.006 34.615 0.00 0.00 0.00 1.40
221 222 7.499895 TGACCTGAAACTTTACGGAACTTATTT 59.500 33.333 0.00 0.00 0.00 1.40
222 223 8.229253 ACCTGAAACTTTACGGAACTTATTTT 57.771 30.769 0.00 0.00 0.00 1.82
223 224 8.689061 ACCTGAAACTTTACGGAACTTATTTTT 58.311 29.630 0.00 0.00 0.00 1.94
224 225 8.964150 CCTGAAACTTTACGGAACTTATTTTTG 58.036 33.333 0.00 0.00 0.00 2.44
225 226 8.859517 TGAAACTTTACGGAACTTATTTTTGG 57.140 30.769 0.00 0.00 0.00 3.28
226 227 8.684520 TGAAACTTTACGGAACTTATTTTTGGA 58.315 29.630 0.00 0.00 0.00 3.53
227 228 8.861033 AAACTTTACGGAACTTATTTTTGGAC 57.139 30.769 0.00 0.00 0.00 4.02
228 229 6.973843 ACTTTACGGAACTTATTTTTGGACC 58.026 36.000 0.00 0.00 0.00 4.46
229 230 6.546772 ACTTTACGGAACTTATTTTTGGACCA 59.453 34.615 0.00 0.00 0.00 4.02
230 231 6.563222 TTACGGAACTTATTTTTGGACCAG 57.437 37.500 0.00 0.00 0.00 4.00
231 232 4.721132 ACGGAACTTATTTTTGGACCAGA 58.279 39.130 0.00 0.00 0.00 3.86
232 233 5.134661 ACGGAACTTATTTTTGGACCAGAA 58.865 37.500 0.00 0.00 0.00 3.02
233 234 5.240844 ACGGAACTTATTTTTGGACCAGAAG 59.759 40.000 0.00 0.00 0.00 2.85
234 235 5.472137 CGGAACTTATTTTTGGACCAGAAGA 59.528 40.000 0.00 0.00 0.00 2.87
235 236 6.016610 CGGAACTTATTTTTGGACCAGAAGAA 60.017 38.462 0.00 0.00 0.00 2.52
236 237 7.371159 GGAACTTATTTTTGGACCAGAAGAAG 58.629 38.462 18.21 18.21 0.00 2.85
237 238 6.332735 ACTTATTTTTGGACCAGAAGAAGC 57.667 37.500 19.10 0.00 0.00 3.86
238 239 5.243954 ACTTATTTTTGGACCAGAAGAAGCC 59.756 40.000 19.10 0.00 0.00 4.35
239 240 1.995376 TTTTGGACCAGAAGAAGCCC 58.005 50.000 0.00 0.00 0.00 5.19
240 241 0.850100 TTTGGACCAGAAGAAGCCCA 59.150 50.000 0.00 0.00 0.00 5.36
241 242 0.110486 TTGGACCAGAAGAAGCCCAC 59.890 55.000 0.00 0.00 0.00 4.61
242 243 1.376037 GGACCAGAAGAAGCCCACG 60.376 63.158 0.00 0.00 0.00 4.94
243 244 1.376037 GACCAGAAGAAGCCCACGG 60.376 63.158 0.00 0.00 0.00 4.94
244 245 1.827399 GACCAGAAGAAGCCCACGGA 61.827 60.000 0.00 0.00 0.00 4.69
245 246 1.078848 CCAGAAGAAGCCCACGGAG 60.079 63.158 0.00 0.00 0.00 4.63
247 248 0.895530 CAGAAGAAGCCCACGGAGTA 59.104 55.000 0.00 0.00 41.61 2.59
248 249 1.482593 CAGAAGAAGCCCACGGAGTAT 59.517 52.381 0.00 0.00 41.61 2.12
249 250 1.757699 AGAAGAAGCCCACGGAGTATC 59.242 52.381 0.00 0.00 41.61 2.24
250 251 0.460311 AAGAAGCCCACGGAGTATCG 59.540 55.000 0.00 0.00 41.61 2.92
251 252 1.067582 GAAGCCCACGGAGTATCGG 59.932 63.158 0.00 0.00 41.61 4.18
252 253 1.380785 AAGCCCACGGAGTATCGGA 60.381 57.895 0.00 0.00 41.61 4.55
253 254 1.392710 AAGCCCACGGAGTATCGGAG 61.393 60.000 0.00 0.00 41.61 4.63
254 255 1.826921 GCCCACGGAGTATCGGAGA 60.827 63.158 0.00 0.00 41.61 3.71
255 256 1.179814 GCCCACGGAGTATCGGAGAT 61.180 60.000 0.00 0.00 41.61 2.75
256 257 0.598562 CCCACGGAGTATCGGAGATG 59.401 60.000 0.00 0.00 41.61 2.90
257 258 0.598562 CCACGGAGTATCGGAGATGG 59.401 60.000 0.00 0.00 41.61 3.51
258 259 1.605753 CACGGAGTATCGGAGATGGA 58.394 55.000 0.00 0.00 41.61 3.41
259 260 1.267261 CACGGAGTATCGGAGATGGAC 59.733 57.143 0.00 0.00 41.61 4.02
260 261 0.882474 CGGAGTATCGGAGATGGACC 59.118 60.000 0.00 0.00 45.12 4.46
261 262 1.818131 CGGAGTATCGGAGATGGACCA 60.818 57.143 0.00 0.00 45.12 4.02
262 263 1.889829 GGAGTATCGGAGATGGACCAG 59.110 57.143 0.00 0.00 45.12 4.00
263 264 1.889829 GAGTATCGGAGATGGACCAGG 59.110 57.143 0.00 0.00 45.12 4.45
264 265 1.499438 AGTATCGGAGATGGACCAGGA 59.501 52.381 0.00 0.00 45.12 3.86
265 266 1.889829 GTATCGGAGATGGACCAGGAG 59.110 57.143 0.00 0.00 45.12 3.69
266 267 0.558220 ATCGGAGATGGACCAGGAGA 59.442 55.000 0.00 0.00 45.12 3.71
267 268 0.106469 TCGGAGATGGACCAGGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
268 269 0.396417 CGGAGATGGACCAGGAGAGT 60.396 60.000 0.00 0.00 0.00 3.24
269 270 1.408969 GGAGATGGACCAGGAGAGTC 58.591 60.000 0.00 0.00 0.00 3.36
273 274 2.760385 GGACCAGGAGAGTCCCGG 60.760 72.222 0.00 0.00 46.85 5.73
274 275 2.760385 GACCAGGAGAGTCCCGGG 60.760 72.222 16.85 16.85 45.51 5.73
276 277 4.787280 CCAGGAGAGTCCCGGGCT 62.787 72.222 18.49 17.10 37.19 5.19
277 278 3.465403 CAGGAGAGTCCCGGGCTG 61.465 72.222 18.49 12.73 37.19 4.85
315 316 3.650950 GCCTCCCTGCCTTGTGGA 61.651 66.667 0.00 0.00 34.57 4.02
316 317 2.352805 CCTCCCTGCCTTGTGGAC 59.647 66.667 0.00 0.00 34.57 4.02
317 318 2.528818 CCTCCCTGCCTTGTGGACA 61.529 63.158 0.00 0.00 34.57 4.02
318 319 1.002868 CTCCCTGCCTTGTGGACAG 60.003 63.158 0.00 0.00 37.29 3.51
319 320 2.674380 CCCTGCCTTGTGGACAGC 60.674 66.667 0.00 0.00 36.69 4.40
320 321 2.674380 CCTGCCTTGTGGACAGCC 60.674 66.667 0.00 0.00 36.69 4.85
321 322 2.674380 CTGCCTTGTGGACAGCCC 60.674 66.667 0.00 0.00 33.30 5.19
322 323 4.641645 TGCCTTGTGGACAGCCCG 62.642 66.667 0.00 0.00 37.93 6.13
323 324 4.329545 GCCTTGTGGACAGCCCGA 62.330 66.667 0.00 0.00 37.93 5.14
324 325 2.429930 CCTTGTGGACAGCCCGAA 59.570 61.111 0.00 0.00 37.93 4.30
325 326 1.672356 CCTTGTGGACAGCCCGAAG 60.672 63.158 0.00 0.00 37.93 3.79
338 339 3.266964 CGAAGGTCCACCGACGTA 58.733 61.111 0.00 0.00 40.17 3.57
339 340 1.154150 CGAAGGTCCACCGACGTAC 60.154 63.158 0.00 0.00 40.17 3.67
340 341 1.580845 CGAAGGTCCACCGACGTACT 61.581 60.000 0.00 0.00 40.17 2.73
341 342 0.600057 GAAGGTCCACCGACGTACTT 59.400 55.000 0.00 0.00 40.17 2.24
342 343 0.600057 AAGGTCCACCGACGTACTTC 59.400 55.000 0.00 0.00 40.17 3.01
343 344 0.251077 AGGTCCACCGACGTACTTCT 60.251 55.000 0.00 0.00 40.17 2.85
344 345 0.600057 GGTCCACCGACGTACTTCTT 59.400 55.000 0.00 0.00 40.17 2.52
345 346 1.402062 GGTCCACCGACGTACTTCTTC 60.402 57.143 0.00 0.00 40.17 2.87
346 347 0.883833 TCCACCGACGTACTTCTTCC 59.116 55.000 0.00 0.00 0.00 3.46
347 348 0.886563 CCACCGACGTACTTCTTCCT 59.113 55.000 0.00 0.00 0.00 3.36
348 349 1.135460 CCACCGACGTACTTCTTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
349 350 1.811359 CACCGACGTACTTCTTCCTCT 59.189 52.381 0.00 0.00 0.00 3.69
350 351 2.083002 ACCGACGTACTTCTTCCTCTC 58.917 52.381 0.00 0.00 0.00 3.20
351 352 2.082231 CCGACGTACTTCTTCCTCTCA 58.918 52.381 0.00 0.00 0.00 3.27
352 353 2.683867 CCGACGTACTTCTTCCTCTCAT 59.316 50.000 0.00 0.00 0.00 2.90
398 399 0.913451 ACTTGGCTCCAGGATGCTCT 60.913 55.000 4.97 0.00 31.97 4.09
401 402 0.619832 TGGCTCCAGGATGCTCTCTT 60.620 55.000 9.85 0.00 31.97 2.85
500 502 3.372822 TCAATTTTTACCTCGCGGTCATC 59.627 43.478 6.13 0.00 44.21 2.92
514 516 3.804036 CGGTCATCTTTACTGGCCAATA 58.196 45.455 7.01 0.00 38.32 1.90
519 521 3.985019 TCTTTACTGGCCAATAACGGA 57.015 42.857 6.06 5.50 0.00 4.69
535 537 2.711922 GGATGGGCTCGTCTCGTGT 61.712 63.158 5.61 0.00 0.00 4.49
554 556 0.827089 TGTTCATTGGCTGGGTGTGG 60.827 55.000 0.00 0.00 0.00 4.17
559 561 0.763986 ATTGGCTGGGTGTGGCTTTT 60.764 50.000 0.00 0.00 0.00 2.27
631 633 0.249868 TCGACCTGCAGAACAACCAG 60.250 55.000 17.39 0.00 0.00 4.00
891 895 2.662596 CTTGTCTAGCACCGGCCA 59.337 61.111 0.00 0.00 42.56 5.36
929 933 2.597217 CCAAGGGCGCCTCAAACA 60.597 61.111 28.56 0.00 30.89 2.83
1031 1109 1.150536 CCTCCTCCTCTCTCTCCCG 59.849 68.421 0.00 0.00 0.00 5.14
1088 1167 0.995803 TTGGCTGCATACCCAGGTTA 59.004 50.000 0.50 0.00 33.44 2.85
1204 1293 2.846206 AGTATGGGATGTCTGAGGCAAA 59.154 45.455 0.00 0.00 0.00 3.68
1205 1294 2.905415 ATGGGATGTCTGAGGCAAAA 57.095 45.000 0.00 0.00 0.00 2.44
1222 1311 7.393796 TGAGGCAAAATTTTTATCCATGCATTT 59.606 29.630 0.00 0.00 34.14 2.32
1304 1415 2.772077 TTAGGCCTGCAATTCACGTA 57.228 45.000 17.99 0.00 0.00 3.57
1391 2269 8.807581 ACGATTTTCAAGTTGTTCTTTCATTTC 58.192 29.630 2.11 0.00 33.63 2.17
1392 2270 9.023967 CGATTTTCAAGTTGTTCTTTCATTTCT 57.976 29.630 2.11 0.00 33.63 2.52
1542 2421 2.872858 TCGTCTCATCGTCTTCATCGAT 59.127 45.455 0.00 0.00 46.70 3.59
1658 2559 2.285743 GCCTGGGTCCCTCCTCTT 60.286 66.667 10.00 0.00 36.25 2.85
1674 2576 2.922503 TTGCTCCTGCCGAGGTCA 60.923 61.111 0.56 0.00 40.76 4.02
1817 2722 3.963374 CCATGAGGAAGAGGATGTCAGTA 59.037 47.826 0.00 0.00 36.89 2.74
1840 2745 3.374058 GCTGATATAGAGAGCTCCTCGAC 59.626 52.174 10.93 0.00 46.49 4.20
1938 2851 4.032960 TGGCATGTCCAGTTAGTTCATT 57.967 40.909 4.93 0.00 40.72 2.57
2200 3460 9.880157 CTCTCATTTACAATTTTGATGGGAATT 57.120 29.630 0.00 0.00 27.70 2.17
2377 3648 7.487829 TGAACATGTGTGCTTTTAAGAAACTTC 59.512 33.333 0.00 0.00 0.00 3.01
2473 4489 6.461110 AGCTTCATTTTGGTCCATTAGATG 57.539 37.500 0.00 0.00 0.00 2.90
2573 5854 4.346129 CCTGACAAAATAATCGCAGCTTC 58.654 43.478 0.00 0.00 0.00 3.86
2647 9633 6.095860 AGCTAATTACTGAATCTGCAATGCAA 59.904 34.615 9.92 0.73 38.41 4.08
2690 9677 4.644103 AGTGGATGAATTAGCATTGTGC 57.356 40.909 0.00 0.00 45.46 4.57
2796 9783 6.389830 TTGAGCACTGAACAATGTTAACAT 57.610 33.333 15.47 15.47 38.41 2.71
2809 9796 9.823647 AACAATGTTAACATGTTTACCATTTCA 57.176 25.926 21.46 5.70 36.56 2.69
2983 9977 2.747460 TGGCACTGAGATTGGCGC 60.747 61.111 0.00 0.00 42.36 6.53
3058 10052 5.745294 CCTGTCAAATGTTCAGAAAACTGTG 59.255 40.000 0.00 0.00 0.00 3.66
3180 10174 4.600576 TGCTTGACTGCGTCGCCA 62.601 61.111 15.88 2.24 34.95 5.69
3241 10235 1.475403 TCTAGGTTCTCTTCCAGCGG 58.525 55.000 0.00 0.00 0.00 5.52
3296 10290 7.201857 GCCAGATGCCTAATTCTTATTTTCTGT 60.202 37.037 0.00 0.00 0.00 3.41
3374 10368 2.484264 GACATGCACAGGTTAACTCCAC 59.516 50.000 5.42 0.00 0.00 4.02
3384 10378 6.039270 CACAGGTTAACTCCACAATTCAGAAA 59.961 38.462 5.42 0.00 0.00 2.52
3495 10493 3.818210 TGCTTTGTCAACCGAATATGTGT 59.182 39.130 0.00 0.00 0.00 3.72
3496 10494 4.998033 TGCTTTGTCAACCGAATATGTGTA 59.002 37.500 0.00 0.00 0.00 2.90
3497 10495 5.645929 TGCTTTGTCAACCGAATATGTGTAT 59.354 36.000 0.00 0.00 0.00 2.29
3498 10496 5.965334 GCTTTGTCAACCGAATATGTGTATG 59.035 40.000 0.00 0.00 0.00 2.39
3690 11978 4.617959 ACGCATACAAGTATATCGCAAGT 58.382 39.130 11.42 0.00 39.48 3.16
3692 11980 5.522460 ACGCATACAAGTATATCGCAAGTTT 59.478 36.000 11.42 0.00 39.48 2.66
3966 12257 5.480422 TCTGTTCTATGTTTGGAGAGCACTA 59.520 40.000 0.00 0.00 30.80 2.74
3985 12276 7.231467 AGCACTATCTCTTTTTCCCTTTTGTA 58.769 34.615 0.00 0.00 0.00 2.41
4030 12322 6.156256 ACTCTGCACTAACCCATGATTAGTAA 59.844 38.462 17.13 10.70 40.18 2.24
4037 12329 7.277981 CACTAACCCATGATTAGTAACTGTGAC 59.722 40.741 17.13 0.00 40.18 3.67
4139 12431 5.772521 ACATTTGTCTGGCTAATTTCACAC 58.227 37.500 0.00 0.00 0.00 3.82
4141 12433 4.829064 TTGTCTGGCTAATTTCACACAC 57.171 40.909 0.00 0.00 0.00 3.82
4143 12435 3.563808 TGTCTGGCTAATTTCACACACAC 59.436 43.478 0.00 0.00 0.00 3.82
4145 12437 3.563808 TCTGGCTAATTTCACACACACAC 59.436 43.478 0.00 0.00 0.00 3.82
4147 12439 3.066064 TGGCTAATTTCACACACACACAC 59.934 43.478 0.00 0.00 0.00 3.82
4149 12441 4.035017 GCTAATTTCACACACACACACAC 58.965 43.478 0.00 0.00 0.00 3.82
4151 12443 2.979401 TTTCACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
4153 12445 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
4155 12447 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4156 12448 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4157 12449 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4158 12450 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4159 12451 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4161 12453 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4162 12454 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4163 12455 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4164 12456 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4165 12457 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4167 12459 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4168 12460 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4169 12461 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4294 12969 5.316987 ACAGTTCAGTAGGAAATTTCAGGG 58.683 41.667 19.49 4.70 37.23 4.45
4309 12984 2.069775 TCAGGGATGGACCAAGGAAAA 58.930 47.619 0.00 0.00 41.20 2.29
4327 13002 3.863142 AAAAAGATGCTGATGGAGTGC 57.137 42.857 0.00 0.00 0.00 4.40
4350 13028 4.273480 CCCTGTATTGCTACCTGATTTTCG 59.727 45.833 0.00 0.00 0.00 3.46
4424 13102 4.517285 TCCAGAAGAATTGGTATCTGCAC 58.483 43.478 0.00 0.00 38.34 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 8.975295 GGTTCTAGGTTAATAGGTTAGTCTCAA 58.025 37.037 0.00 0.00 0.00 3.02
98 99 7.562821 GGGTTCTAGGTTAATAGGTTAGTCTCA 59.437 40.741 0.00 0.00 0.00 3.27
99 100 7.562821 TGGGTTCTAGGTTAATAGGTTAGTCTC 59.437 40.741 0.00 0.00 0.00 3.36
100 101 7.425003 TGGGTTCTAGGTTAATAGGTTAGTCT 58.575 38.462 0.00 0.00 0.00 3.24
101 102 7.666063 TGGGTTCTAGGTTAATAGGTTAGTC 57.334 40.000 0.00 0.00 0.00 2.59
102 103 8.491958 CATTGGGTTCTAGGTTAATAGGTTAGT 58.508 37.037 0.00 0.00 0.00 2.24
103 104 7.444487 GCATTGGGTTCTAGGTTAATAGGTTAG 59.556 40.741 0.00 0.00 0.00 2.34
104 105 7.284820 GCATTGGGTTCTAGGTTAATAGGTTA 58.715 38.462 0.00 0.00 0.00 2.85
105 106 6.127101 GCATTGGGTTCTAGGTTAATAGGTT 58.873 40.000 0.00 0.00 0.00 3.50
106 107 5.398695 GGCATTGGGTTCTAGGTTAATAGGT 60.399 44.000 0.00 0.00 0.00 3.08
107 108 5.070685 GGCATTGGGTTCTAGGTTAATAGG 58.929 45.833 0.00 0.00 0.00 2.57
108 109 5.690865 TGGCATTGGGTTCTAGGTTAATAG 58.309 41.667 0.00 0.00 0.00 1.73
109 110 5.718801 TGGCATTGGGTTCTAGGTTAATA 57.281 39.130 0.00 0.00 0.00 0.98
110 111 4.601406 TGGCATTGGGTTCTAGGTTAAT 57.399 40.909 0.00 0.00 0.00 1.40
111 112 4.390129 TTGGCATTGGGTTCTAGGTTAA 57.610 40.909 0.00 0.00 0.00 2.01
112 113 4.601406 ATTGGCATTGGGTTCTAGGTTA 57.399 40.909 0.00 0.00 0.00 2.85
113 114 2.990740 TTGGCATTGGGTTCTAGGTT 57.009 45.000 0.00 0.00 0.00 3.50
114 115 3.473113 AATTGGCATTGGGTTCTAGGT 57.527 42.857 0.00 0.00 0.00 3.08
115 116 4.026052 AGAAATTGGCATTGGGTTCTAGG 58.974 43.478 0.00 0.00 0.00 3.02
116 117 4.463891 ACAGAAATTGGCATTGGGTTCTAG 59.536 41.667 0.00 0.00 0.00 2.43
117 118 4.415596 ACAGAAATTGGCATTGGGTTCTA 58.584 39.130 0.00 0.00 0.00 2.10
118 119 3.242011 ACAGAAATTGGCATTGGGTTCT 58.758 40.909 0.00 0.00 0.00 3.01
119 120 3.683365 ACAGAAATTGGCATTGGGTTC 57.317 42.857 0.00 0.00 0.00 3.62
120 121 4.436113 AAACAGAAATTGGCATTGGGTT 57.564 36.364 0.00 0.00 0.00 4.11
121 122 4.436113 AAAACAGAAATTGGCATTGGGT 57.564 36.364 0.00 0.00 0.00 4.51
147 148 9.273016 CCTTTTCTGTGATACTCTAAAACAAGA 57.727 33.333 0.00 0.00 0.00 3.02
148 149 9.273016 TCCTTTTCTGTGATACTCTAAAACAAG 57.727 33.333 0.00 0.00 0.00 3.16
149 150 9.621629 TTCCTTTTCTGTGATACTCTAAAACAA 57.378 29.630 0.00 0.00 0.00 2.83
150 151 9.621629 TTTCCTTTTCTGTGATACTCTAAAACA 57.378 29.630 0.00 0.00 0.00 2.83
156 157 8.924511 TGATTTTTCCTTTTCTGTGATACTCT 57.075 30.769 0.00 0.00 0.00 3.24
157 158 9.965824 TTTGATTTTTCCTTTTCTGTGATACTC 57.034 29.630 0.00 0.00 0.00 2.59
158 159 9.750125 GTTTGATTTTTCCTTTTCTGTGATACT 57.250 29.630 0.00 0.00 0.00 2.12
159 160 8.690840 CGTTTGATTTTTCCTTTTCTGTGATAC 58.309 33.333 0.00 0.00 0.00 2.24
160 161 7.865385 CCGTTTGATTTTTCCTTTTCTGTGATA 59.135 33.333 0.00 0.00 0.00 2.15
161 162 6.701400 CCGTTTGATTTTTCCTTTTCTGTGAT 59.299 34.615 0.00 0.00 0.00 3.06
162 163 6.039616 CCGTTTGATTTTTCCTTTTCTGTGA 58.960 36.000 0.00 0.00 0.00 3.58
163 164 6.039616 TCCGTTTGATTTTTCCTTTTCTGTG 58.960 36.000 0.00 0.00 0.00 3.66
164 165 6.127451 ACTCCGTTTGATTTTTCCTTTTCTGT 60.127 34.615 0.00 0.00 0.00 3.41
165 166 6.273071 ACTCCGTTTGATTTTTCCTTTTCTG 58.727 36.000 0.00 0.00 0.00 3.02
166 167 6.461092 GGACTCCGTTTGATTTTTCCTTTTCT 60.461 38.462 0.00 0.00 0.00 2.52
167 168 5.690409 GGACTCCGTTTGATTTTTCCTTTTC 59.310 40.000 0.00 0.00 0.00 2.29
168 169 5.128008 TGGACTCCGTTTGATTTTTCCTTTT 59.872 36.000 0.00 0.00 0.00 2.27
169 170 4.647399 TGGACTCCGTTTGATTTTTCCTTT 59.353 37.500 0.00 0.00 0.00 3.11
170 171 4.211920 TGGACTCCGTTTGATTTTTCCTT 58.788 39.130 0.00 0.00 0.00 3.36
171 172 3.827722 TGGACTCCGTTTGATTTTTCCT 58.172 40.909 0.00 0.00 0.00 3.36
172 173 4.577834 TTGGACTCCGTTTGATTTTTCC 57.422 40.909 0.00 0.00 0.00 3.13
173 174 6.143919 GTCAATTGGACTCCGTTTGATTTTTC 59.856 38.462 5.42 1.09 43.46 2.29
174 175 5.983118 GTCAATTGGACTCCGTTTGATTTTT 59.017 36.000 5.42 0.00 43.46 1.94
175 176 5.508994 GGTCAATTGGACTCCGTTTGATTTT 60.509 40.000 5.42 0.00 46.16 1.82
176 177 4.022329 GGTCAATTGGACTCCGTTTGATTT 60.022 41.667 5.42 0.00 46.16 2.17
177 178 3.506067 GGTCAATTGGACTCCGTTTGATT 59.494 43.478 5.42 0.00 46.16 2.57
178 179 3.081804 GGTCAATTGGACTCCGTTTGAT 58.918 45.455 5.42 0.00 46.16 2.57
179 180 2.105821 AGGTCAATTGGACTCCGTTTGA 59.894 45.455 5.42 7.94 46.16 2.69
180 181 2.226437 CAGGTCAATTGGACTCCGTTTG 59.774 50.000 5.42 4.20 46.16 2.93
181 182 2.105821 TCAGGTCAATTGGACTCCGTTT 59.894 45.455 5.42 0.00 46.16 3.60
182 183 1.697432 TCAGGTCAATTGGACTCCGTT 59.303 47.619 5.42 0.00 46.16 4.44
183 184 1.348064 TCAGGTCAATTGGACTCCGT 58.652 50.000 5.42 0.00 46.16 4.69
184 185 2.472695 TTCAGGTCAATTGGACTCCG 57.527 50.000 5.42 1.85 46.16 4.63
185 186 3.756117 AGTTTCAGGTCAATTGGACTCC 58.244 45.455 5.42 3.98 46.16 3.85
186 187 5.774498 AAAGTTTCAGGTCAATTGGACTC 57.226 39.130 5.42 0.00 46.16 3.36
187 188 5.238650 CGTAAAGTTTCAGGTCAATTGGACT 59.761 40.000 5.42 1.20 46.16 3.85
188 189 5.449304 CGTAAAGTTTCAGGTCAATTGGAC 58.551 41.667 5.42 2.73 46.20 4.02
189 190 4.517453 CCGTAAAGTTTCAGGTCAATTGGA 59.483 41.667 5.42 0.00 0.00 3.53
190 191 4.517453 TCCGTAAAGTTTCAGGTCAATTGG 59.483 41.667 5.42 0.00 0.00 3.16
191 192 5.682943 TCCGTAAAGTTTCAGGTCAATTG 57.317 39.130 0.00 0.00 0.00 2.32
192 193 5.826208 AGTTCCGTAAAGTTTCAGGTCAATT 59.174 36.000 8.56 0.00 0.00 2.32
193 194 5.374071 AGTTCCGTAAAGTTTCAGGTCAAT 58.626 37.500 8.56 0.00 0.00 2.57
194 195 4.773013 AGTTCCGTAAAGTTTCAGGTCAA 58.227 39.130 8.56 0.00 0.00 3.18
195 196 4.411256 AGTTCCGTAAAGTTTCAGGTCA 57.589 40.909 8.56 0.00 0.00 4.02
196 197 7.430992 AATAAGTTCCGTAAAGTTTCAGGTC 57.569 36.000 8.56 4.95 32.66 3.85
197 198 7.812690 AAATAAGTTCCGTAAAGTTTCAGGT 57.187 32.000 8.56 0.00 32.66 4.00
198 199 8.964150 CAAAAATAAGTTCCGTAAAGTTTCAGG 58.036 33.333 0.00 0.00 32.66 3.86
199 200 8.964150 CCAAAAATAAGTTCCGTAAAGTTTCAG 58.036 33.333 0.00 0.00 32.66 3.02
200 201 8.684520 TCCAAAAATAAGTTCCGTAAAGTTTCA 58.315 29.630 0.00 0.00 32.66 2.69
201 202 8.961092 GTCCAAAAATAAGTTCCGTAAAGTTTC 58.039 33.333 0.00 0.00 32.66 2.78
202 203 7.922278 GGTCCAAAAATAAGTTCCGTAAAGTTT 59.078 33.333 0.00 0.00 32.66 2.66
203 204 7.068470 TGGTCCAAAAATAAGTTCCGTAAAGTT 59.932 33.333 0.00 0.00 34.80 2.66
204 205 6.546772 TGGTCCAAAAATAAGTTCCGTAAAGT 59.453 34.615 0.00 0.00 0.00 2.66
205 206 6.972722 TGGTCCAAAAATAAGTTCCGTAAAG 58.027 36.000 0.00 0.00 0.00 1.85
206 207 6.771749 TCTGGTCCAAAAATAAGTTCCGTAAA 59.228 34.615 0.00 0.00 0.00 2.01
207 208 6.297582 TCTGGTCCAAAAATAAGTTCCGTAA 58.702 36.000 0.00 0.00 0.00 3.18
208 209 5.867330 TCTGGTCCAAAAATAAGTTCCGTA 58.133 37.500 0.00 0.00 0.00 4.02
209 210 4.721132 TCTGGTCCAAAAATAAGTTCCGT 58.279 39.130 0.00 0.00 0.00 4.69
210 211 5.472137 TCTTCTGGTCCAAAAATAAGTTCCG 59.528 40.000 0.00 0.00 0.00 4.30
211 212 6.894339 TCTTCTGGTCCAAAAATAAGTTCC 57.106 37.500 0.00 0.00 0.00 3.62
212 213 6.863645 GCTTCTTCTGGTCCAAAAATAAGTTC 59.136 38.462 0.00 0.00 0.00 3.01
213 214 6.239317 GGCTTCTTCTGGTCCAAAAATAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
214 215 5.243954 GGCTTCTTCTGGTCCAAAAATAAGT 59.756 40.000 0.00 0.00 0.00 2.24
215 216 5.336770 GGGCTTCTTCTGGTCCAAAAATAAG 60.337 44.000 0.00 0.92 0.00 1.73
216 217 4.526650 GGGCTTCTTCTGGTCCAAAAATAA 59.473 41.667 0.00 0.00 0.00 1.40
217 218 4.086457 GGGCTTCTTCTGGTCCAAAAATA 58.914 43.478 0.00 0.00 0.00 1.40
218 219 2.899900 GGGCTTCTTCTGGTCCAAAAAT 59.100 45.455 0.00 0.00 0.00 1.82
219 220 2.316108 GGGCTTCTTCTGGTCCAAAAA 58.684 47.619 0.00 0.00 0.00 1.94
220 221 1.216678 TGGGCTTCTTCTGGTCCAAAA 59.783 47.619 0.00 0.00 0.00 2.44
221 222 0.850100 TGGGCTTCTTCTGGTCCAAA 59.150 50.000 0.00 0.00 0.00 3.28
222 223 0.110486 GTGGGCTTCTTCTGGTCCAA 59.890 55.000 0.00 0.00 0.00 3.53
223 224 1.761174 GTGGGCTTCTTCTGGTCCA 59.239 57.895 0.00 0.00 0.00 4.02
224 225 1.376037 CGTGGGCTTCTTCTGGTCC 60.376 63.158 0.00 0.00 0.00 4.46
225 226 1.376037 CCGTGGGCTTCTTCTGGTC 60.376 63.158 0.00 0.00 0.00 4.02
226 227 1.831652 CTCCGTGGGCTTCTTCTGGT 61.832 60.000 0.00 0.00 0.00 4.00
227 228 1.078848 CTCCGTGGGCTTCTTCTGG 60.079 63.158 0.00 0.00 0.00 3.86
228 229 0.895530 TACTCCGTGGGCTTCTTCTG 59.104 55.000 0.00 0.00 0.00 3.02
229 230 1.757699 GATACTCCGTGGGCTTCTTCT 59.242 52.381 0.00 0.00 0.00 2.85
230 231 1.536284 CGATACTCCGTGGGCTTCTTC 60.536 57.143 0.00 0.00 0.00 2.87
231 232 0.460311 CGATACTCCGTGGGCTTCTT 59.540 55.000 0.00 0.00 0.00 2.52
232 233 1.392710 CCGATACTCCGTGGGCTTCT 61.393 60.000 0.00 0.00 0.00 2.85
233 234 1.067582 CCGATACTCCGTGGGCTTC 59.932 63.158 0.00 0.00 0.00 3.86
234 235 1.380785 TCCGATACTCCGTGGGCTT 60.381 57.895 0.00 0.00 0.00 4.35
235 236 1.828660 CTCCGATACTCCGTGGGCT 60.829 63.158 0.00 0.00 0.00 5.19
236 237 1.179814 ATCTCCGATACTCCGTGGGC 61.180 60.000 0.00 0.00 0.00 5.36
237 238 0.598562 CATCTCCGATACTCCGTGGG 59.401 60.000 0.00 0.00 0.00 4.61
238 239 0.598562 CCATCTCCGATACTCCGTGG 59.401 60.000 0.00 0.00 0.00 4.94
239 240 1.267261 GTCCATCTCCGATACTCCGTG 59.733 57.143 0.00 0.00 0.00 4.94
240 241 1.606903 GTCCATCTCCGATACTCCGT 58.393 55.000 0.00 0.00 0.00 4.69
241 242 0.882474 GGTCCATCTCCGATACTCCG 59.118 60.000 0.00 0.00 0.00 4.63
242 243 1.889829 CTGGTCCATCTCCGATACTCC 59.110 57.143 0.00 0.00 0.00 3.85
243 244 1.889829 CCTGGTCCATCTCCGATACTC 59.110 57.143 0.00 0.00 0.00 2.59
244 245 1.499438 TCCTGGTCCATCTCCGATACT 59.501 52.381 0.00 0.00 0.00 2.12
245 246 1.889829 CTCCTGGTCCATCTCCGATAC 59.110 57.143 0.00 0.00 0.00 2.24
246 247 1.780919 TCTCCTGGTCCATCTCCGATA 59.219 52.381 0.00 0.00 0.00 2.92
247 248 0.558220 TCTCCTGGTCCATCTCCGAT 59.442 55.000 0.00 0.00 0.00 4.18
248 249 0.106469 CTCTCCTGGTCCATCTCCGA 60.106 60.000 0.00 0.00 0.00 4.55
249 250 0.396417 ACTCTCCTGGTCCATCTCCG 60.396 60.000 0.00 0.00 0.00 4.63
250 251 1.408969 GACTCTCCTGGTCCATCTCC 58.591 60.000 0.00 0.00 0.00 3.71
260 261 3.465403 CAGCCCGGGACTCTCCTG 61.465 72.222 29.31 17.33 42.66 3.86
298 299 3.650950 TCCACAAGGCAGGGAGGC 61.651 66.667 0.00 0.00 44.61 4.70
299 300 2.352805 GTCCACAAGGCAGGGAGG 59.647 66.667 0.00 0.00 33.74 4.30
300 301 1.002868 CTGTCCACAAGGCAGGGAG 60.003 63.158 0.00 0.00 36.21 4.30
301 302 3.160585 CTGTCCACAAGGCAGGGA 58.839 61.111 0.00 0.00 36.21 4.20
302 303 2.674380 GCTGTCCACAAGGCAGGG 60.674 66.667 0.00 0.00 38.61 4.45
303 304 2.674380 GGCTGTCCACAAGGCAGG 60.674 66.667 0.00 0.00 38.61 4.85
304 305 2.674380 GGGCTGTCCACAAGGCAG 60.674 66.667 0.00 0.00 40.10 4.85
305 306 4.641645 CGGGCTGTCCACAAGGCA 62.642 66.667 0.00 0.00 34.36 4.75
306 307 3.842925 TTCGGGCTGTCCACAAGGC 62.843 63.158 0.00 0.00 34.36 4.35
307 308 1.672356 CTTCGGGCTGTCCACAAGG 60.672 63.158 0.00 0.00 34.36 3.61
308 309 1.672356 CCTTCGGGCTGTCCACAAG 60.672 63.158 0.00 0.00 34.36 3.16
309 310 2.391724 GACCTTCGGGCTGTCCACAA 62.392 60.000 0.00 0.00 39.10 3.33
310 311 2.847234 ACCTTCGGGCTGTCCACA 60.847 61.111 0.00 0.00 39.10 4.17
311 312 2.047179 GACCTTCGGGCTGTCCAC 60.047 66.667 0.00 0.00 39.10 4.02
312 313 3.319198 GGACCTTCGGGCTGTCCA 61.319 66.667 0.00 0.00 46.29 4.02
314 315 2.047179 GTGGACCTTCGGGCTGTC 60.047 66.667 0.00 0.00 39.10 3.51
315 316 3.637273 GGTGGACCTTCGGGCTGT 61.637 66.667 0.00 0.00 39.10 4.40
316 317 4.760047 CGGTGGACCTTCGGGCTG 62.760 72.222 0.00 0.00 39.10 4.85
318 319 4.754667 GTCGGTGGACCTTCGGGC 62.755 72.222 7.09 0.00 37.19 6.13
319 320 4.430765 CGTCGGTGGACCTTCGGG 62.431 72.222 7.09 0.00 40.17 5.14
320 321 2.334946 TACGTCGGTGGACCTTCGG 61.335 63.158 0.00 0.00 40.17 4.30
321 322 1.154150 GTACGTCGGTGGACCTTCG 60.154 63.158 0.00 7.59 40.17 3.79
322 323 0.600057 AAGTACGTCGGTGGACCTTC 59.400 55.000 0.00 0.00 40.17 3.46
323 324 0.600057 GAAGTACGTCGGTGGACCTT 59.400 55.000 0.00 0.00 40.17 3.50
324 325 0.251077 AGAAGTACGTCGGTGGACCT 60.251 55.000 3.05 0.00 40.17 3.85
325 326 0.600057 AAGAAGTACGTCGGTGGACC 59.400 55.000 3.05 0.00 40.17 4.46
326 327 1.402062 GGAAGAAGTACGTCGGTGGAC 60.402 57.143 3.05 0.00 39.89 4.02
327 328 0.883833 GGAAGAAGTACGTCGGTGGA 59.116 55.000 3.05 0.00 0.00 4.02
328 329 0.886563 AGGAAGAAGTACGTCGGTGG 59.113 55.000 3.05 0.00 0.00 4.61
329 330 1.811359 AGAGGAAGAAGTACGTCGGTG 59.189 52.381 3.05 0.00 0.00 4.94
330 331 2.083002 GAGAGGAAGAAGTACGTCGGT 58.917 52.381 3.05 0.00 0.00 4.69
331 332 2.082231 TGAGAGGAAGAAGTACGTCGG 58.918 52.381 3.05 0.00 0.00 4.79
332 333 5.676532 ATATGAGAGGAAGAAGTACGTCG 57.323 43.478 3.05 0.00 0.00 5.12
333 334 7.266922 AGAATATGAGAGGAAGAAGTACGTC 57.733 40.000 0.00 0.00 0.00 4.34
334 335 8.623030 GTTAGAATATGAGAGGAAGAAGTACGT 58.377 37.037 0.00 0.00 0.00 3.57
335 336 8.077386 GGTTAGAATATGAGAGGAAGAAGTACG 58.923 40.741 0.00 0.00 0.00 3.67
336 337 9.138596 AGGTTAGAATATGAGAGGAAGAAGTAC 57.861 37.037 0.00 0.00 0.00 2.73
338 339 9.890915 ATAGGTTAGAATATGAGAGGAAGAAGT 57.109 33.333 0.00 0.00 0.00 3.01
347 348 9.775539 AGCATCCTTATAGGTTAGAATATGAGA 57.224 33.333 0.00 0.00 36.53 3.27
350 351 9.757227 GCTAGCATCCTTATAGGTTAGAATATG 57.243 37.037 10.63 0.00 36.53 1.78
351 352 8.929487 GGCTAGCATCCTTATAGGTTAGAATAT 58.071 37.037 18.24 0.00 36.53 1.28
352 353 7.899172 TGGCTAGCATCCTTATAGGTTAGAATA 59.101 37.037 18.24 0.00 36.53 1.75
390 391 2.948315 GGACCAAATCAAGAGAGCATCC 59.052 50.000 0.00 0.00 33.66 3.51
398 399 4.389374 GTCAGAAGTGGACCAAATCAAGA 58.611 43.478 0.00 0.00 0.00 3.02
441 442 0.911769 AGATCAGACGGCCCAAATGA 59.088 50.000 0.00 0.00 0.00 2.57
500 502 3.315191 CCATCCGTTATTGGCCAGTAAAG 59.685 47.826 21.08 21.43 0.00 1.85
514 516 2.893398 GAGACGAGCCCATCCGTT 59.107 61.111 0.00 0.00 39.30 4.44
519 521 1.816863 AACACACGAGACGAGCCCAT 61.817 55.000 0.00 0.00 0.00 4.00
535 537 0.827089 CCACACCCAGCCAATGAACA 60.827 55.000 0.00 0.00 0.00 3.18
554 556 0.179189 CCTCGCGAACATGGAAAAGC 60.179 55.000 11.33 0.00 0.00 3.51
559 561 0.179084 GAATCCCTCGCGAACATGGA 60.179 55.000 11.33 14.14 0.00 3.41
606 608 2.994671 TTCTGCAGGTCGAGCCGAG 61.995 63.158 15.13 4.93 43.70 4.63
607 609 2.989253 TTCTGCAGGTCGAGCCGA 60.989 61.111 15.13 0.00 43.70 5.54
608 610 2.811317 GTTCTGCAGGTCGAGCCG 60.811 66.667 15.13 1.35 43.70 5.52
609 611 1.301716 TTGTTCTGCAGGTCGAGCC 60.302 57.895 15.13 3.31 37.58 4.70
617 619 1.242076 CCCTTCTGGTTGTTCTGCAG 58.758 55.000 7.63 7.63 0.00 4.41
730 733 3.382803 CTGAGGCAAGCGGGGAGAG 62.383 68.421 0.00 0.00 0.00 3.20
891 895 1.893801 CTACCCTCCGTCTTGTTCACT 59.106 52.381 0.00 0.00 0.00 3.41
1031 1109 2.125350 CGAGTGAGAGCAAGGGGC 60.125 66.667 0.00 0.00 45.30 5.80
1088 1167 2.771372 GGGGCAGAGAAAGAGAGAGATT 59.229 50.000 0.00 0.00 0.00 2.40
1181 1265 2.042464 GCCTCAGACATCCCATACTCA 58.958 52.381 0.00 0.00 0.00 3.41
1245 1335 5.773575 TCCAGATCTTCTATTCCGAAATCG 58.226 41.667 0.00 0.00 39.44 3.34
1304 1415 9.288576 TGATCTCAATGTTGAAGAGTAACAAAT 57.711 29.630 0.00 0.00 40.95 2.32
1498 2377 6.074516 CGACGCCGATATTTCTTTATCAAAGA 60.075 38.462 0.00 0.00 40.97 2.52
1542 2421 2.224450 TGGTCCGATAGAGATGCTCGTA 60.224 50.000 0.00 0.00 35.36 3.43
1658 2559 3.695606 GTGACCTCGGCAGGAGCA 61.696 66.667 9.53 5.10 43.65 4.26
1674 2576 0.246360 TGATGCCTCGACGAACATGT 59.754 50.000 15.53 0.00 0.00 3.21
1720 2622 6.187727 ACAAGTGGAAGAACAGAAATAGGA 57.812 37.500 0.00 0.00 0.00 2.94
1817 2722 3.263170 TCGAGGAGCTCTCTATATCAGCT 59.737 47.826 14.64 0.00 46.42 4.24
1840 2745 1.073199 AGAACTGCAACTTCCCCGG 59.927 57.895 0.00 0.00 0.00 5.73
1938 2851 6.650807 CAGACAGAGTTAGATGCAAAGGTTAA 59.349 38.462 0.00 0.00 0.00 2.01
2186 3446 6.357579 TGTTGTAGCAATTCCCATCAAAAT 57.642 33.333 0.00 0.00 0.00 1.82
2200 3460 8.128582 CAGTTTCTTCTAATTGTTGTTGTAGCA 58.871 33.333 0.00 0.00 0.00 3.49
2377 3648 6.017852 GGCTCTTCAAAATAGGGAAGAATACG 60.018 42.308 5.70 0.00 46.28 3.06
2473 4489 4.636206 CCTCCAGTGACAAAGCTATAAACC 59.364 45.833 0.00 0.00 0.00 3.27
2573 5854 9.350357 GCATTCATGGCTGTATATAATTTTCAG 57.650 33.333 0.00 0.00 0.00 3.02
2690 9677 2.028930 ACGGGAGCTTAGACAGACTTTG 60.029 50.000 0.00 0.00 0.00 2.77
2809 9796 9.889128 CAATCCCAAAATGGTATTAAGAAATGT 57.111 29.630 0.00 0.00 35.17 2.71
2983 9977 4.478195 CTGGAAGTAGGCGTCACG 57.522 61.111 0.00 0.00 0.00 4.35
3058 10052 3.253188 TCTGGCAGCAGTTTTAACACATC 59.747 43.478 10.34 0.00 0.00 3.06
3127 10121 3.123621 AGAGAAATGCAGCGTAAAGTTCG 59.876 43.478 0.00 0.00 0.00 3.95
3180 10174 1.102978 AGAACGCAAGCCAAAGTTGT 58.897 45.000 0.00 0.00 45.62 3.32
3241 10235 2.299993 TGTCGGATGATCTGAGCAAC 57.700 50.000 3.78 0.00 31.37 4.17
3296 10290 4.798924 GCCATAATCCTGCACACAAAACAA 60.799 41.667 0.00 0.00 0.00 2.83
3374 10368 9.270576 CAATACGAAGACTGAATTTCTGAATTG 57.729 33.333 9.92 3.11 35.65 2.32
3384 10378 5.043903 CGGATGTCAATACGAAGACTGAAT 58.956 41.667 0.00 0.00 43.30 2.57
3469 10463 0.313672 TTCGGTTGACAAAGCATGGC 59.686 50.000 0.00 0.00 37.68 4.40
3495 10493 9.660180 TTCGCCTTTATTGCATATACATACATA 57.340 29.630 0.00 0.00 0.00 2.29
3496 10494 8.560355 TTCGCCTTTATTGCATATACATACAT 57.440 30.769 0.00 0.00 0.00 2.29
3497 10495 7.875554 TCTTCGCCTTTATTGCATATACATACA 59.124 33.333 0.00 0.00 0.00 2.29
3498 10496 8.251750 TCTTCGCCTTTATTGCATATACATAC 57.748 34.615 0.00 0.00 0.00 2.39
3507 10505 3.407698 TCTGTTCTTCGCCTTTATTGCA 58.592 40.909 0.00 0.00 0.00 4.08
4030 12322 9.227777 CATTGGATAATCATCATATGTCACAGT 57.772 33.333 1.90 0.00 32.32 3.55
4069 12361 8.893219 ATTCCTTTTCAAAATGAAGGTTTCTC 57.107 30.769 6.71 0.00 40.60 2.87
4112 12404 9.237187 TGTGAAATTAGCCAGACAAATGTATAA 57.763 29.630 0.00 0.00 0.00 0.98
4123 12415 3.563808 GTGTGTGTGTGAAATTAGCCAGA 59.436 43.478 0.00 0.00 0.00 3.86
4135 12427 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4137 12429 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4139 12431 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4141 12433 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4143 12435 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4145 12437 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4147 12439 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4149 12441 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4151 12443 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4153 12445 5.665381 TTATATGTGTGTGTGTGTGTGTG 57.335 39.130 0.00 0.00 0.00 3.82
4155 12447 8.572828 AAAAATTATATGTGTGTGTGTGTGTG 57.427 30.769 0.00 0.00 0.00 3.82
4156 12448 9.672086 GTAAAAATTATATGTGTGTGTGTGTGT 57.328 29.630 0.00 0.00 0.00 3.72
4157 12449 9.670719 TGTAAAAATTATATGTGTGTGTGTGTG 57.329 29.630 0.00 0.00 0.00 3.82
4208 12882 3.181476 GGTAAATAGCATGTTGGGCAAGG 60.181 47.826 0.00 0.00 0.00 3.61
4309 12984 1.684248 GGGCACTCCATCAGCATCTTT 60.684 52.381 0.00 0.00 35.00 2.52
4327 13002 4.273480 CGAAAATCAGGTAGCAATACAGGG 59.727 45.833 0.00 0.00 0.00 4.45
4371 13049 1.166531 AGTTGTTGAAGGACAGCGCC 61.167 55.000 2.29 0.00 36.10 6.53
4424 13102 2.404789 CGCGCTACCAATTGCCTG 59.595 61.111 5.56 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.