AutoCloner

Multiple sequence alignment - TraesCS2A01G177800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G177800	chr2A	100.000	2778	0	0	1	2778	137128148	137130925	0.000000e+00	5131.0
1	TraesCS2A01G177800	chr2A	77.764	787	92	34	938	1676	137212623	137213374	9.260000e-110	407.0
2	TraesCS2A01G177800	chr2A	78.354	559	71	25	1106	1624	137140758	137141306	1.610000e-82	316.0
3	TraesCS2A01G177800	chr2A	88.435	147	17	0	1332	1478	137140956	137141102	7.910000e-41	178.0
4	TraesCS2A01G177800	chr2B	91.316	1520	74	23	1	1478	184493575	184495078	0.000000e+00	2023.0
5	TraesCS2A01G177800	chr2B	84.831	679	66	16	1214	1888	184494928	184495573	0.000000e+00	649.0
6	TraesCS2A01G177800	chr2B	87.324	355	21	7	1953	2307	184496078	184496408	4.340000e-103	385.0
7	TraesCS2A01G177800	chr2B	92.193	269	21	0	1210	1478	184494867	184495135	5.610000e-102	381.0
8	TraesCS2A01G177800	chr2B	77.480	746	93	38	933	1624	184513372	184514096	7.260000e-101	377.0
9	TraesCS2A01G177800	chr2B	93.529	170	11	0	1751	1920	184633023	184633192	1.280000e-63	254.0
10	TraesCS2A01G177800	chr2B	92.353	170	13	0	1751	1920	184600456	184600625	2.760000e-60	243.0
11	TraesCS2A01G177800	chr2B	88.435	147	17	0	1332	1478	184513745	184513891	7.910000e-41	178.0
12	TraesCS2A01G177800	chr2B	100.000	30	0	0	1913	1942	184496051	184496080	3.870000e-04	56.5
13	TraesCS2A01G177800	chr2D	88.444	1549	93	36	1	1478	130986700	130988233	0.000000e+00	1790.0
14	TraesCS2A01G177800	chr2D	81.055	1156	123	50	1210	2307	130987998	130989115	0.000000e+00	833.0
15	TraesCS2A01G177800	chr2D	93.214	560	26	4	874	1421	131041956	131042515	0.000000e+00	813.0
16	TraesCS2A01G177800	chr2D	87.673	722	44	13	1267	1966	131042304	131043002	0.000000e+00	798.0
17	TraesCS2A01G177800	chr2D	84.992	593	34	13	2222	2776	131047450	131048025	4.040000e-153	551.0
18	TraesCS2A01G177800	chr2D	79.429	700	91	28	794	1478	131124175	131124836	1.960000e-121	446.0
19	TraesCS2A01G177800	chr2D	80.895	581	69	16	931	1478	131114345	131114916	1.190000e-113	420.0
20	TraesCS2A01G177800	chr2D	83.405	464	45	11	1332	1765	131043029	131043490	4.310000e-108	401.0
21	TraesCS2A01G177800	chr2D	84.323	421	46	13	944	1345	131134187	131134606	7.210000e-106	394.0
22	TraesCS2A01G177800	chr2D	87.736	318	29	5	1455	1765	131002636	131002950	2.030000e-96	363.0
23	TraesCS2A01G177800	chr2D	96.154	208	8	0	2571	2778	130991691	130991898	9.530000e-90	340.0
24	TraesCS2A01G177800	chr2D	82.524	309	29	14	215	499	131041425	131041732	5.940000e-62	248.0
25	TraesCS2A01G177800	chr2D	79.480	346	38	16	1332	1676	131124747	131125060	6.030000e-52	215.0
26	TraesCS2A01G177800	chr2D	77.324	441	40	26	1210	1624	131114681	131115087	3.630000e-49	206.0
27	TraesCS2A01G177800	chr2D	88.068	176	13	3	2359	2528	130991520	130991693	4.690000e-48	202.0
28	TraesCS2A01G177800	chr2D	85.185	135	17	3	1343	1476	131052659	131052791	4.830000e-28	135.0
29	TraesCS2A01G177800	chr2D	81.982	111	17	3	3	113	131123994	131124101	1.060000e-14	91.6
30	TraesCS2A01G177800	chrUn	78.562	737	99	28	931	1624	13406185	13406905	5.500000e-117	431.0
31	TraesCS2A01G177800	chrUn	88.435	147	17	0	1332	1478	13406555	13406701	7.910000e-41	178.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G177800	chr2A	137128148	137130925	2777	False	5131.000000	5131	100.00000	1	2778	1	chr2A.!!$F1	2777
1	TraesCS2A01G177800	chr2A	137212623	137213374	751	False	407.000000	407	77.76400	938	1676	1	chr2A.!!$F2	738
2	TraesCS2A01G177800	chr2A	137140758	137141306	548	False	247.000000	316	83.39450	1106	1624	2	chr2A.!!$F3	518
3	TraesCS2A01G177800	chr2B	184493575	184496408	2833	False	698.900000	2023	91.13280	1	2307	5	chr2B.!!$F3	2306
4	TraesCS2A01G177800	chr2B	184513372	184514096	724	False	277.500000	377	82.95750	933	1624	2	chr2B.!!$F4	691
5	TraesCS2A01G177800	chr2D	130986700	130991898	5198	False	791.250000	1790	88.43025	1	2778	4	chr2D.!!$F4	2777
6	TraesCS2A01G177800	chr2D	131041425	131048025	6600	False	562.200000	813	86.36160	215	2776	5	chr2D.!!$F5	2561
7	TraesCS2A01G177800	chr2D	131114345	131115087	742	False	313.000000	420	79.10950	931	1624	2	chr2D.!!$F6	693
8	TraesCS2A01G177800	chr2D	131123994	131125060	1066	False	250.866667	446	80.29700	3	1676	3	chr2D.!!$F7	1673
9	TraesCS2A01G177800	chrUn	13406185	13406905	720	False	304.500000	431	83.49850	931	1624	2	chrUn.!!$F1	693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
874	943	0.036952	ATCTGCACGGTGTCCTCAAG	60.037	55.0	10.24	0.0	0.0	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2043	5426	0.315251	TCCATTCGCTCGATGCTAGG	59.685	55.0	5.53	0.0	40.11	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
106	107	5.311121	TGGACTCCCACAAAGATAAGGTAAA	59.689	40.000	0.00	0.00	37.58	2.01
108	109	5.567430	ACTCCCACAAAGATAAGGTAAACC	58.433	41.667	0.00	0.00	0.00	3.27
131	133	8.896320	ACCTTTTATTTTGTGGTTACCATTTC	57.104	30.769	7.58	0.00	35.28	2.17
141	143	7.260387	TGTGGTTACCATTTCCATACTTCTA	57.740	36.000	7.58	0.00	35.28	2.10
468	498	1.890876	TTGGTTGACAAGACATCCCG	58.109	50.000	0.00	0.00	33.18	5.14
509	539	2.331451	GTTGGAAGCACGTGCACC	59.669	61.111	39.21	36.20	45.16	5.01
573	604	1.135315	CAGCGCTTGCGCATAAGTT	59.865	52.632	35.35	15.79	45.69	2.66
657	688	4.081752	TGAAACTGTGAAAAGCCAACACAT	60.082	37.500	0.00	0.00	42.30	3.21
834	900	1.284657	CTCTATGAGCTTGCACGGTG	58.715	55.000	0.00	3.15	0.00	4.94
840	906	3.053896	GCTTGCACGGTGGTACCC	61.054	66.667	10.07	0.11	33.75	3.69
850	919	2.122144	TGGTACCCACCCTGCACT	60.122	61.111	10.07	0.00	45.11	4.40
874	943	0.036952	ATCTGCACGGTGTCCTCAAG	60.037	55.000	10.24	0.00	0.00	3.02
942	1032	0.040958	GAAACGCAGTGCAGACAAGG	60.041	55.000	16.83	0.00	45.00	3.61
980	1070	1.747206	GCATATGGCCGGACTTTCTGT	60.747	52.381	9.82	0.00	36.11	3.41
1174	1296	3.381908	GGCGAGAATTCTAGAAGAGACCA	59.618	47.826	18.55	0.00	32.31	4.02
1179	1304	7.488322	CGAGAATTCTAGAAGAGACCATTTCT	58.512	38.462	8.25	11.57	37.42	2.52
1218	1343	1.976474	GGTGCCATCGCTTCCCAAA	60.976	57.895	0.00	0.00	35.36	3.28
1432	2241	1.302285	CTGCCCAAGATGGAGCTGT	59.698	57.895	0.00	0.00	40.96	4.40
1586	2497	4.982916	GCTCCTCGTACATGTACCTATTTG	59.017	45.833	26.37	13.66	32.61	2.32
1590	2501	4.353737	TCGTACATGTACCTATTTGTCGC	58.646	43.478	26.37	1.58	32.61	5.19
1599	2510	0.638746	CTATTTGTCGCGTCGTGTCC	59.361	55.000	5.77	0.00	0.00	4.02
1652	2563	2.992543	GAGTGTTGTGAGTGATCTGCTC	59.007	50.000	9.84	9.84	0.00	4.26
1657	2568	5.006455	GTGTTGTGAGTGATCTGCTCATATG	59.994	44.000	18.59	0.00	43.73	1.78
1713	2634	5.935789	TCACAATTACCCTTTTCTCGTAAGG	59.064	40.000	0.00	0.00	41.51	2.69
1721	2642	3.557264	CCTTTTCTCGTAAGGGTGCTTCT	60.557	47.826	0.00	0.00	38.79	2.85
1733	2654	5.630415	AGGGTGCTTCTTAAGTATGCATA	57.370	39.130	17.41	1.16	36.04	3.14
1762	2686	6.701400	CCTTACAACAATTTTTACAGCAAGCT	59.299	34.615	0.00	0.00	0.00	3.74
1763	2687	7.224557	CCTTACAACAATTTTTACAGCAAGCTT	59.775	33.333	0.00	0.00	0.00	3.74
1764	2688	6.983474	ACAACAATTTTTACAGCAAGCTTT	57.017	29.167	0.00	0.00	0.00	3.51
1910	5292	2.416162	GCTTGAGTAAGAGGGTGTCTCG	60.416	54.545	0.00	0.00	46.82	4.04
1911	5293	1.835494	TGAGTAAGAGGGTGTCTCGG	58.165	55.000	0.00	0.00	46.82	4.63
1944	5327	0.813610	TCACACTGTTCTTGGGTGCG	60.814	55.000	0.00	0.00	34.70	5.34
1981	5364	3.505184	CCGTGTTGTATGGCCGCC	61.505	66.667	1.04	1.04	0.00	6.13
2043	5426	8.762426	GTCCTTATTTTAACTCCATGTCGTATC	58.238	37.037	0.00	0.00	0.00	2.24
2159	5730	5.535030	ACCTTACTCCAGATTTTTGGTGTTC	59.465	40.000	5.24	0.00	40.93	3.18
2160	5731	5.048013	CCTTACTCCAGATTTTTGGTGTTCC	60.048	44.000	5.24	0.00	40.93	3.62
2161	5732	3.909732	ACTCCAGATTTTTGGTGTTCCA	58.090	40.909	0.00	0.00	40.93	3.53
2186	7163	2.817844	GGCGGGTAAATATGTCCCAATC	59.182	50.000	9.72	0.84	41.12	2.67
2209	7186	7.009179	TCTGTTCTTGTGTAGGATGAAATCT	57.991	36.000	0.00	0.00	44.71	2.40
2210	7187	8.134202	TCTGTTCTTGTGTAGGATGAAATCTA	57.866	34.615	0.00	0.00	44.71	1.98
2239	7216	3.624326	GGCCAAATTCAAAAGCCAAAC	57.376	42.857	0.00	0.00	43.32	2.93
2268	7245	3.923461	ACAACAACAATCAAACCAACGTG	59.077	39.130	0.00	0.00	0.00	4.49
2283	7260	1.299850	CGTGACCGAGTGCTCAACA	60.300	57.895	0.00	0.00	35.63	3.33
2329	9638	4.687901	AGCAAATTAAGCAGGGTTTGTT	57.312	36.364	5.70	0.00	34.82	2.83
2331	9640	3.498018	GCAAATTAAGCAGGGTTTGTTGG	59.502	43.478	0.00	0.00	34.82	3.77
2418	9749	1.620822	AGGGCAATTGAACCAGACAC	58.379	50.000	10.34	0.00	0.00	3.67
2429	9760	4.584874	TGAACCAGACACTGAACTCAAAA	58.415	39.130	0.00	0.00	32.44	2.44
2436	9767	8.352942	ACCAGACACTGAACTCAAAATTTTATC	58.647	33.333	2.44	1.34	32.44	1.75
2524	9861	7.113124	CGTGTTATTCTTATAGCGTAACCTCTG	59.887	40.741	0.00	0.00	0.00	3.35
2548	9885	2.407428	CCGCCAGTCGTCTAGCTCA	61.407	63.158	0.00	0.00	36.19	4.26
2553	9890	1.268999	CCAGTCGTCTAGCTCAGATGC	60.269	57.143	0.00	0.00	39.75	3.91
2554	9891	1.675483	CAGTCGTCTAGCTCAGATGCT	59.325	52.381	0.00	0.00	46.11	3.79
2555	9892	1.675483	AGTCGTCTAGCTCAGATGCTG	59.325	52.381	0.00	0.00	43.87	4.41
2556	9893	1.028130	TCGTCTAGCTCAGATGCTGG	58.972	55.000	0.00	0.00	43.87	4.85
2557	9894	1.028130	CGTCTAGCTCAGATGCTGGA	58.972	55.000	0.00	0.00	45.87	3.86
2559	9896	2.744352	TCTAGCTCAGATGCTGGAGA	57.256	50.000	0.00	0.00	43.81	3.71
2560	9897	3.023939	TCTAGCTCAGATGCTGGAGAA	57.976	47.619	0.00	0.00	43.81	2.87
2561	9898	2.957680	TCTAGCTCAGATGCTGGAGAAG	59.042	50.000	0.00	0.00	43.81	2.85
2562	9899	0.831966	AGCTCAGATGCTGGAGAAGG	59.168	55.000	0.00	0.00	42.33	3.46
2563	9900	0.829333	GCTCAGATGCTGGAGAAGGA	59.171	55.000	0.00	0.00	31.51	3.36
2564	9901	1.209019	GCTCAGATGCTGGAGAAGGAA	59.791	52.381	0.00	0.00	31.51	3.36
2565	9902	2.742530	GCTCAGATGCTGGAGAAGGAAG	60.743	54.545	0.00	0.00	31.51	3.46
2566	9903	2.765135	CTCAGATGCTGGAGAAGGAAGA	59.235	50.000	0.00	0.00	31.51	2.87
2567	9904	3.176411	TCAGATGCTGGAGAAGGAAGAA	58.824	45.455	0.00	0.00	31.51	2.52
2568	9905	3.584406	TCAGATGCTGGAGAAGGAAGAAA	59.416	43.478	0.00	0.00	31.51	2.52
2569	9906	4.042062	TCAGATGCTGGAGAAGGAAGAAAA	59.958	41.667	0.00	0.00	31.51	2.29
2640	9977	1.678101	ACTTGCTTGTGTTCTTCTGCC	59.322	47.619	0.00	0.00	0.00	4.85
2645	9982	2.810400	GCTTGTGTTCTTCTGCCACCTA	60.810	50.000	0.00	0.00	0.00	3.08
2659	9996	1.522900	CACCTAATGGTCCCCTGGAT	58.477	55.000	0.00	0.00	46.60	3.41
2700	10037	0.878416	TGGCCTAACAATTGCGTGTC	59.122	50.000	3.32	0.00	0.00	3.67
2730	10067	1.523154	ATCAGCCGCAAAAGCCGAAA	61.523	50.000	0.00	0.00	0.00	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
106	107	7.934665	GGAAATGGTAACCACAAAATAAAAGGT	59.065	33.333	0.00	0.00	35.80	3.50
108	109	8.894768	TGGAAATGGTAACCACAAAATAAAAG	57.105	30.769	0.00	0.00	35.80	2.27
112	113	8.887264	AGTATGGAAATGGTAACCACAAAATA	57.113	30.769	0.00	0.00	35.80	1.40
131	133	6.426328	GCATCTCATTTGTCCTAGAAGTATGG	59.574	42.308	0.00	0.00	0.00	2.74
141	143	4.008330	CTGTTGAGCATCTCATTTGTCCT	58.992	43.478	0.00	0.00	40.39	3.85
287	290	5.804639	ACCTTGATAGCACAAGAACATACA	58.195	37.500	16.09	0.00	46.85	2.29
468	498	5.123661	CCATAATTGGCATGGTTTGGTTTTC	59.876	40.000	0.00	0.00	38.53	2.29
573	604	1.843851	GGTGACCCCTAACATGGATCA	59.156	52.381	0.00	0.00	0.00	2.92
850	919	3.932580	GACACCGTGCAGATGCCGA	62.933	63.158	14.51	0.00	41.18	5.54
942	1032	2.143122	TGCAACGAGTTTGGTCATCTC	58.857	47.619	0.00	0.00	35.51	2.75
1161	1283	6.836527	CCTCCTTAGAAATGGTCTCTTCTAGA	59.163	42.308	0.00	0.00	35.96	2.43
1174	1296	2.092699	GCTGGTGCTCCTCCTTAGAAAT	60.093	50.000	6.34	0.00	36.03	2.17
1179	1304	1.995626	GGGCTGGTGCTCCTCCTTA	60.996	63.158	6.34	0.00	39.59	2.69
1218	1343	0.320697	GGAACGGTGGCAGTTCTACT	59.679	55.000	16.28	0.00	45.20	2.57
1411	2220	1.379576	GCTCCATCTTGGGCAGCTT	60.380	57.895	0.00	0.00	38.32	3.74
1423	2232	0.321653	GGGAACGTTGACAGCTCCAT	60.322	55.000	5.00	0.00	0.00	3.41
1432	2241	1.124780	TGAACCTCTGGGAACGTTGA	58.875	50.000	5.00	0.00	36.25	3.18
1586	2497	1.472276	GATCATGGACACGACGCGAC	61.472	60.000	15.93	5.54	0.00	5.19
1590	2501	2.498807	ATCAGATCATGGACACGACG	57.501	50.000	0.00	0.00	0.00	5.12
1599	2510	7.149569	ACCACAACTAAACAATCAGATCATG	57.850	36.000	0.00	0.00	0.00	3.07
1733	2654	7.777095	TGCTGTAAAAATTGTTGTAAGGAAGT	58.223	30.769	0.00	0.00	0.00	3.01
1770	2694	6.817641	TGGGCTTTTATGTTTTATTGATGCAG	59.182	34.615	0.00	0.00	0.00	4.41
1847	4761	4.743493	ACTCAACAACAATGTGTGGTTTC	58.257	39.130	0.00	0.00	41.48	2.78
1850	4764	4.493547	CAAACTCAACAACAATGTGTGGT	58.506	39.130	0.00	0.00	40.46	4.16
1944	5327	2.434359	GTGAGCTACCACGCCCAC	60.434	66.667	0.00	0.00	31.57	4.61
2007	5390	6.849151	AGTTAAAATAAGGACCAGGTCAAGT	58.151	36.000	21.75	7.94	33.68	3.16
2008	5391	6.374613	GGAGTTAAAATAAGGACCAGGTCAAG	59.625	42.308	21.75	0.00	33.68	3.02
2023	5406	6.929606	GCTAGGATACGACATGGAGTTAAAAT	59.070	38.462	0.00	0.00	46.39	1.82
2043	5426	0.315251	TCCATTCGCTCGATGCTAGG	59.685	55.000	5.53	0.00	40.11	3.02
2099	5670	2.580815	CACTCCTCATCAGCGGCA	59.419	61.111	1.45	0.00	0.00	5.69
2159	5730	2.482721	GACATATTTACCCGCCGAATGG	59.517	50.000	0.00	0.00	38.77	3.16
2160	5731	2.482721	GGACATATTTACCCGCCGAATG	59.517	50.000	0.00	0.00	0.00	2.67
2161	5732	2.551504	GGGACATATTTACCCGCCGAAT	60.552	50.000	0.00	0.00	34.03	3.34
2186	7163	8.954950	ATAGATTTCATCCTACACAAGAACAG	57.045	34.615	0.00	0.00	0.00	3.16
2209	7186	7.418483	GGCTTTTGAATTTGGCCAACCTATATA	60.418	37.037	20.35	0.97	42.08	0.86
2210	7187	6.348498	GCTTTTGAATTTGGCCAACCTATAT	58.652	36.000	20.35	5.60	36.63	0.86
2239	7216	8.327429	GTTGGTTTGATTGTTGTTGTCTTATTG	58.673	33.333	0.00	0.00	0.00	1.90
2283	7260	1.001633	CTGCCGGTGTGGTACTTAAGT	59.998	52.381	13.68	13.68	41.21	2.24
2356	9665	0.550914	TTGCCAAGGTCCTGAAGTGT	59.449	50.000	0.00	0.00	0.00	3.55
2357	9666	1.242076	CTTGCCAAGGTCCTGAAGTG	58.758	55.000	0.00	0.00	0.00	3.16
2405	9736	4.422073	TGAGTTCAGTGTCTGGTTCAAT	57.578	40.909	0.00	0.00	31.51	2.57
2542	9879	2.037901	CCTTCTCCAGCATCTGAGCTA	58.962	52.381	0.00	0.00	44.54	3.32
2548	9885	4.567327	CCTTTTCTTCCTTCTCCAGCATCT	60.567	45.833	0.00	0.00	0.00	2.90
2553	9890	3.308046	CCTCCCTTTTCTTCCTTCTCCAG	60.308	52.174	0.00	0.00	0.00	3.86
2554	9891	2.644798	CCTCCCTTTTCTTCCTTCTCCA	59.355	50.000	0.00	0.00	0.00	3.86
2555	9892	2.913617	TCCTCCCTTTTCTTCCTTCTCC	59.086	50.000	0.00	0.00	0.00	3.71
2556	9893	3.585289	ACTCCTCCCTTTTCTTCCTTCTC	59.415	47.826	0.00	0.00	0.00	2.87
2557	9894	3.585289	GACTCCTCCCTTTTCTTCCTTCT	59.415	47.826	0.00	0.00	0.00	2.85
2558	9895	3.585289	AGACTCCTCCCTTTTCTTCCTTC	59.415	47.826	0.00	0.00	0.00	3.46
2559	9896	3.603697	AGACTCCTCCCTTTTCTTCCTT	58.396	45.455	0.00	0.00	0.00	3.36
2560	9897	3.283712	AGACTCCTCCCTTTTCTTCCT	57.716	47.619	0.00	0.00	0.00	3.36
2561	9898	4.098155	ACTAGACTCCTCCCTTTTCTTCC	58.902	47.826	0.00	0.00	0.00	3.46
2562	9899	5.483811	CAACTAGACTCCTCCCTTTTCTTC	58.516	45.833	0.00	0.00	0.00	2.87
2563	9900	4.287326	CCAACTAGACTCCTCCCTTTTCTT	59.713	45.833	0.00	0.00	0.00	2.52
2564	9901	3.841255	CCAACTAGACTCCTCCCTTTTCT	59.159	47.826	0.00	0.00	0.00	2.52
2565	9902	3.620226	GCCAACTAGACTCCTCCCTTTTC	60.620	52.174	0.00	0.00	0.00	2.29
2566	9903	2.306219	GCCAACTAGACTCCTCCCTTTT	59.694	50.000	0.00	0.00	0.00	2.27
2567	9904	1.909986	GCCAACTAGACTCCTCCCTTT	59.090	52.381	0.00	0.00	0.00	3.11
2568	9905	1.574263	GCCAACTAGACTCCTCCCTT	58.426	55.000	0.00	0.00	0.00	3.95
2569	9906	0.684805	CGCCAACTAGACTCCTCCCT	60.685	60.000	0.00	0.00	0.00	4.20
2654	9991	4.745620	GCTAAGACTAAACGCCTTATCCAG	59.254	45.833	0.00	0.00	0.00	3.86
2659	9996	3.194968	AGCTGCTAAGACTAAACGCCTTA	59.805	43.478	0.00	0.00	0.00	2.69
2700	10037	1.202568	TGCGGCTGATGTTGAGGATAG	60.203	52.381	0.00	0.00	0.00	2.08
2730	10067	5.891551	GGGTGAAGAGAGATTAGAGAGTTCT	59.108	44.000	0.00	0.00	37.46	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.