Multiple sequence alignment - TraesCS2A01G176600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G176600 chr2A 100.000 3250 0 0 1 3250 136085238 136088487 0.000000e+00 6002.0
1 TraesCS2A01G176600 chr2A 82.213 506 51 21 2262 2735 43681799 43682297 1.820000e-107 399.0
2 TraesCS2A01G176600 chr2A 95.833 72 3 0 3179 3250 773373239 773373168 2.050000e-22 117.0
3 TraesCS2A01G176600 chr2A 92.958 71 5 0 3180 3250 428088192 428088262 1.600000e-18 104.0
4 TraesCS2A01G176600 chr2A 86.667 75 6 3 173 247 421910645 421910575 2.690000e-11 80.5
5 TraesCS2A01G176600 chr2D 93.593 1389 66 7 823 2192 129267449 129268833 0.000000e+00 2050.0
6 TraesCS2A01G176600 chr2D 87.605 597 64 7 81 668 129266861 129267456 0.000000e+00 684.0
7 TraesCS2A01G176600 chr2D 93.814 291 9 1 2885 3175 129269393 129269674 2.320000e-116 429.0
8 TraesCS2A01G176600 chr2D 83.202 506 46 20 2262 2735 41915233 41915731 8.330000e-116 427.0
9 TraesCS2A01G176600 chr2B 94.247 1095 59 2 1131 2225 182861324 182862414 0.000000e+00 1670.0
10 TraesCS2A01G176600 chr2B 85.741 533 59 9 81 598 182720065 182720595 6.130000e-152 547.0
11 TraesCS2A01G176600 chr2B 92.105 76 6 0 823 898 182722350 182722425 1.230000e-19 108.0
12 TraesCS2A01G176600 chr2B 90.278 72 7 0 3179 3250 199228836 199228907 9.600000e-16 95.3
13 TraesCS2A01G176600 chr7D 93.678 522 17 3 2230 2735 464271783 464272304 0.000000e+00 767.0
14 TraesCS2A01G176600 chr7D 92.571 525 23 3 2227 2735 464266176 464266700 0.000000e+00 739.0
15 TraesCS2A01G176600 chr7D 73.285 277 63 9 175 448 433079365 433079097 1.240000e-14 91.6
16 TraesCS2A01G176600 chr3A 92.748 524 15 4 2228 2735 28586764 28586248 0.000000e+00 736.0
17 TraesCS2A01G176600 chr3A 90.179 112 8 2 1 110 497284396 497284506 3.380000e-30 143.0
18 TraesCS2A01G176600 chr3A 82.812 128 22 0 1649 1776 30362574 30362701 7.370000e-22 115.0
19 TraesCS2A01G176600 chr3A 82.031 128 23 0 1649 1776 30444154 30444281 3.430000e-20 110.0
20 TraesCS2A01G176600 chr3B 90.395 531 25 7 2230 2735 689016690 689016161 0.000000e+00 675.0
21 TraesCS2A01G176600 chr3B 90.395 531 25 9 2230 2735 689341044 689340515 0.000000e+00 675.0
22 TraesCS2A01G176600 chr3B 89.831 531 28 7 2230 2735 689010924 689010395 0.000000e+00 658.0
23 TraesCS2A01G176600 chr3B 89.513 534 27 7 2230 2735 283440 282908 0.000000e+00 649.0
24 TraesCS2A01G176600 chr3B 87.952 332 16 5 2428 2735 689345560 689345229 1.420000e-98 370.0
25 TraesCS2A01G176600 chr1B 89.306 533 30 9 2229 2735 107364174 107364705 0.000000e+00 643.0
26 TraesCS2A01G176600 chr1B 92.857 98 5 2 1 97 390786324 390786228 1.220000e-29 141.0
27 TraesCS2A01G176600 chr1B 95.946 74 3 0 3177 3250 532680659 532680732 1.580000e-23 121.0
28 TraesCS2A01G176600 chr1B 92.683 82 5 1 3169 3250 31564805 31564725 2.050000e-22 117.0
29 TraesCS2A01G176600 chr1B 86.250 80 9 2 2239 2317 556240571 556240649 5.780000e-13 86.1
30 TraesCS2A01G176600 chr1B 100.000 29 0 0 1085 1113 533368705 533368733 2.000000e-03 54.7
31 TraesCS2A01G176600 chr1A 97.727 88 2 0 1 88 68752246 68752333 5.620000e-33 152.0
32 TraesCS2A01G176600 chr1A 95.890 73 3 0 3178 3250 536339874 536339946 5.700000e-23 119.0
33 TraesCS2A01G176600 chr1A 86.154 65 8 1 175 239 322441160 322441223 5.820000e-08 69.4
34 TraesCS2A01G176600 chr1A 90.566 53 4 1 174 226 416356701 416356752 5.820000e-08 69.4
35 TraesCS2A01G176600 chr4B 93.069 101 4 3 1 99 9202475 9202376 9.400000e-31 145.0
36 TraesCS2A01G176600 chr4B 90.090 111 9 2 1 110 106088211 106088102 3.380000e-30 143.0
37 TraesCS2A01G176600 chr7A 97.590 83 2 0 1 83 120047612 120047694 3.380000e-30 143.0
38 TraesCS2A01G176600 chr6B 92.079 101 4 4 1 100 638656401 638656304 4.370000e-29 139.0
39 TraesCS2A01G176600 chr7B 88.034 117 9 4 1 113 464239923 464239808 2.030000e-27 134.0
40 TraesCS2A01G176600 chr7B 88.034 117 9 4 1 113 464251621 464251506 2.030000e-27 134.0
41 TraesCS2A01G176600 chr7B 100.000 29 0 0 1085 1113 732377308 732377280 2.000000e-03 54.7
42 TraesCS2A01G176600 chr7B 100.000 29 0 0 1085 1113 732407239 732407211 2.000000e-03 54.7
43 TraesCS2A01G176600 chr1D 96.053 76 2 1 3176 3250 470518374 470518449 4.400000e-24 122.0
44 TraesCS2A01G176600 chr1D 94.444 72 4 0 3179 3250 446736404 446736333 9.530000e-21 111.0
45 TraesCS2A01G176600 chr5B 88.333 60 5 2 169 226 307160004 307159945 1.620000e-08 71.3
46 TraesCS2A01G176600 chrUn 90.385 52 5 0 175 226 77472591 77472642 5.820000e-08 69.4
47 TraesCS2A01G176600 chrUn 100.000 29 0 0 1085 1113 187439738 187439710 2.000000e-03 54.7
48 TraesCS2A01G176600 chrUn 100.000 29 0 0 1085 1113 213270050 213270078 2.000000e-03 54.7
49 TraesCS2A01G176600 chrUn 100.000 29 0 0 1085 1113 224368781 224368809 2.000000e-03 54.7
50 TraesCS2A01G176600 chrUn 100.000 29 0 0 1085 1113 234840910 234840938 2.000000e-03 54.7
51 TraesCS2A01G176600 chrUn 100.000 29 0 0 1085 1113 366632822 366632794 2.000000e-03 54.7
52 TraesCS2A01G176600 chr6D 90.385 52 4 1 175 226 403830134 403830084 2.090000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G176600 chr2A 136085238 136088487 3249 False 6002.000000 6002 100.000000 1 3250 1 chr2A.!!$F2 3249
1 TraesCS2A01G176600 chr2D 129266861 129269674 2813 False 1054.333333 2050 91.670667 81 3175 3 chr2D.!!$F2 3094
2 TraesCS2A01G176600 chr2B 182861324 182862414 1090 False 1670.000000 1670 94.247000 1131 2225 1 chr2B.!!$F1 1094
3 TraesCS2A01G176600 chr2B 182720065 182722425 2360 False 327.500000 547 88.923000 81 898 2 chr2B.!!$F3 817
4 TraesCS2A01G176600 chr7D 464271783 464272304 521 False 767.000000 767 93.678000 2230 2735 1 chr7D.!!$F2 505
5 TraesCS2A01G176600 chr7D 464266176 464266700 524 False 739.000000 739 92.571000 2227 2735 1 chr7D.!!$F1 508
6 TraesCS2A01G176600 chr3A 28586248 28586764 516 True 736.000000 736 92.748000 2228 2735 1 chr3A.!!$R1 507
7 TraesCS2A01G176600 chr3B 689016161 689016690 529 True 675.000000 675 90.395000 2230 2735 1 chr3B.!!$R3 505
8 TraesCS2A01G176600 chr3B 689340515 689341044 529 True 675.000000 675 90.395000 2230 2735 1 chr3B.!!$R4 505
9 TraesCS2A01G176600 chr3B 689010395 689010924 529 True 658.000000 658 89.831000 2230 2735 1 chr3B.!!$R2 505
10 TraesCS2A01G176600 chr3B 282908 283440 532 True 649.000000 649 89.513000 2230 2735 1 chr3B.!!$R1 505
11 TraesCS2A01G176600 chr1B 107364174 107364705 531 False 643.000000 643 89.306000 2229 2735 1 chr1B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.031721 GTTACCATCCGGCCTAGACG 59.968 60.0 0.00 0.0 34.57 4.18 F
584 599 0.100325 CCTGCAGCGTGTCAAAACAA 59.900 50.0 8.66 0.0 37.08 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 2724 0.107312 GTGGTGGAGATGCTGCTGAT 60.107 55.0 0.0 0.0 0.0 2.90 R
2423 4151 0.335019 TCCGAGATCCTGTTCCCTGA 59.665 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.610911 CCCTTGTCTTCTGTTACCATCC 58.389 50.000 0.00 0.00 0.00 3.51
22 23 3.262420 CCTTGTCTTCTGTTACCATCCG 58.738 50.000 0.00 0.00 0.00 4.18
23 24 3.262420 CTTGTCTTCTGTTACCATCCGG 58.738 50.000 0.00 0.00 38.77 5.14
24 25 1.066430 TGTCTTCTGTTACCATCCGGC 60.066 52.381 0.00 0.00 34.57 6.13
25 26 0.539986 TCTTCTGTTACCATCCGGCC 59.460 55.000 0.00 0.00 34.57 6.13
26 27 0.541863 CTTCTGTTACCATCCGGCCT 59.458 55.000 0.00 0.00 34.57 5.19
27 28 1.760613 CTTCTGTTACCATCCGGCCTA 59.239 52.381 0.00 0.00 34.57 3.93
28 29 1.410004 TCTGTTACCATCCGGCCTAG 58.590 55.000 0.00 0.00 34.57 3.02
29 30 1.063492 TCTGTTACCATCCGGCCTAGA 60.063 52.381 0.00 0.00 34.57 2.43
30 31 1.068741 CTGTTACCATCCGGCCTAGAC 59.931 57.143 0.00 0.00 34.57 2.59
31 32 0.031721 GTTACCATCCGGCCTAGACG 59.968 60.000 0.00 0.00 34.57 4.18
32 33 1.741327 TTACCATCCGGCCTAGACGC 61.741 60.000 0.00 0.00 34.57 5.19
33 34 2.914756 TACCATCCGGCCTAGACGCA 62.915 60.000 0.00 0.00 34.57 5.24
34 35 2.279517 CATCCGGCCTAGACGCAC 60.280 66.667 0.00 0.00 29.68 5.34
35 36 2.758327 ATCCGGCCTAGACGCACA 60.758 61.111 0.00 0.00 29.68 4.57
36 37 2.786495 ATCCGGCCTAGACGCACAG 61.786 63.158 0.00 0.00 29.68 3.66
37 38 3.760035 CCGGCCTAGACGCACAGT 61.760 66.667 0.00 0.00 29.68 3.55
38 39 2.261671 CGGCCTAGACGCACAGTT 59.738 61.111 0.00 0.00 0.00 3.16
39 40 1.805945 CGGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
40 41 1.805945 GGCCTAGACGCACAGTTCG 60.806 63.158 0.00 0.00 0.00 3.95
41 42 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
42 43 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
43 44 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
44 45 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
45 46 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
46 47 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
48 49 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
49 50 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
50 51 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
51 52 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
52 53 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
53 54 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
57 58 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
58 59 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
59 60 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
60 61 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
61 62 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
62 63 2.197875 CCCCTACCCGAGATCCGT 59.802 66.667 0.00 0.00 36.31 4.69
63 64 1.902432 CCCCTACCCGAGATCCGTC 60.902 68.421 0.00 0.00 36.31 4.79
64 65 2.259439 CCCTACCCGAGATCCGTCG 61.259 68.421 0.00 0.00 39.77 5.12
71 72 3.411808 CGAGATCCGTCGGTTTTGA 57.588 52.632 11.88 0.00 36.26 2.69
72 73 0.989890 CGAGATCCGTCGGTTTTGAC 59.010 55.000 11.88 0.00 36.26 3.18
73 74 1.667756 CGAGATCCGTCGGTTTTGACA 60.668 52.381 11.88 0.00 38.84 3.58
74 75 1.725164 GAGATCCGTCGGTTTTGACAC 59.275 52.381 11.88 0.00 38.84 3.67
75 76 0.794473 GATCCGTCGGTTTTGACACC 59.206 55.000 11.88 0.00 38.84 4.16
85 86 2.596553 TTTTGACACCGACAGGGCGT 62.597 55.000 0.00 0.00 43.47 5.68
89 90 2.267681 GACACCGACAGGGCGTCTAG 62.268 65.000 0.00 0.00 42.98 2.43
90 91 2.754658 ACCGACAGGGCGTCTAGG 60.755 66.667 0.00 0.00 42.98 3.02
100 101 1.076923 GCGTCTAGGTCTCCCTCCA 60.077 63.158 0.00 0.00 41.45 3.86
102 103 0.547075 CGTCTAGGTCTCCCTCCAGA 59.453 60.000 0.00 0.00 41.45 3.86
104 105 0.547075 TCTAGGTCTCCCTCCAGACG 59.453 60.000 0.00 0.00 43.43 4.18
132 133 6.418946 GGTCCTACAGATCTTCCTTTTCATT 58.581 40.000 0.00 0.00 0.00 2.57
137 138 8.267894 CCTACAGATCTTCCTTTTCATTCCTTA 58.732 37.037 0.00 0.00 0.00 2.69
145 146 3.332034 CTTTTCATTCCTTACGTCCGGT 58.668 45.455 0.00 0.00 0.00 5.28
171 172 0.579156 CAGCCTCGCTATTCGCTTTC 59.421 55.000 0.00 0.00 36.40 2.62
222 227 9.659830 GGCGTACCATATTTTTATAAAAGTGAG 57.340 33.333 14.33 7.70 35.26 3.51
236 241 7.755582 ATAAAAGTGAGAAACAACAGTTTGC 57.244 32.000 0.00 0.00 38.89 3.68
239 244 5.132897 AGTGAGAAACAACAGTTTGCAAA 57.867 34.783 8.05 8.05 35.71 3.68
259 264 1.153549 GAGACCCGTGGACTGATGC 60.154 63.158 0.25 0.00 0.00 3.91
265 270 1.472552 CCCGTGGACTGATGCGAATAA 60.473 52.381 0.00 0.00 0.00 1.40
270 275 4.122776 GTGGACTGATGCGAATAACATCT 58.877 43.478 5.45 0.00 43.53 2.90
320 326 9.914834 AAGTTAGTCTACTCTCTCATGAACTAT 57.085 33.333 0.00 0.00 0.00 2.12
327 333 2.767960 TCTCTCATGAACTATGCAGCCA 59.232 45.455 0.00 0.00 36.70 4.75
330 336 5.247792 TCTCTCATGAACTATGCAGCCATAT 59.752 40.000 0.00 0.00 36.70 1.78
356 362 1.265905 CCACACCGGCTTGTTTCTAAC 59.734 52.381 0.00 0.00 0.00 2.34
402 408 2.571212 CACTAGCCTTGTTGGTGTTCA 58.429 47.619 0.00 0.00 38.35 3.18
432 438 2.351835 CCACTCGATTCAACACTCTCGT 60.352 50.000 0.00 0.00 33.10 4.18
459 466 4.021192 CCTTTGTTTCCACATATGCCAAGT 60.021 41.667 1.58 0.00 31.06 3.16
460 467 5.184864 CCTTTGTTTCCACATATGCCAAGTA 59.815 40.000 1.58 0.00 31.06 2.24
516 523 0.676736 GGTTGCCGAAAATTGTCCCA 59.323 50.000 0.00 0.00 0.00 4.37
521 528 1.818674 GCCGAAAATTGTCCCATGTCT 59.181 47.619 0.00 0.00 0.00 3.41
529 536 0.915872 TGTCCCATGTCTGAGCCCAT 60.916 55.000 0.00 0.00 0.00 4.00
539 546 3.072038 TGTCTGAGCCCATCATTCTATGG 59.928 47.826 0.00 0.00 45.20 2.74
584 599 0.100325 CCTGCAGCGTGTCAAAACAA 59.900 50.000 8.66 0.00 37.08 2.83
586 601 0.523519 TGCAGCGTGTCAAAACAACA 59.476 45.000 0.00 0.00 37.08 3.33
598 613 4.685628 GTCAAAACAACAATGCCATACCTG 59.314 41.667 0.00 0.00 0.00 4.00
605 2312 4.830765 TGCCATACCTGTCGCGCC 62.831 66.667 0.00 0.00 0.00 6.53
607 2314 2.279517 CCATACCTGTCGCGCCTC 60.280 66.667 0.00 0.00 0.00 4.70
662 2369 3.804518 TCATCGTGCAAACATGTGTAC 57.195 42.857 0.00 0.00 34.22 2.90
668 2375 0.309302 GCAAACATGTGTACCACGCA 59.691 50.000 0.00 0.00 43.36 5.24
670 2377 1.601903 CAAACATGTGTACCACGCAGT 59.398 47.619 0.00 0.00 42.38 4.40
687 2394 4.731853 TGGCGGATCCAGGACCCA 62.732 66.667 13.41 6.76 40.72 4.51
688 2395 3.407967 GGCGGATCCAGGACCCAA 61.408 66.667 13.41 0.00 34.01 4.12
689 2396 2.190578 GCGGATCCAGGACCCAAG 59.809 66.667 13.41 0.00 0.00 3.61
690 2397 2.190578 CGGATCCAGGACCCAAGC 59.809 66.667 13.41 0.00 0.00 4.01
691 2398 2.597903 GGATCCAGGACCCAAGCC 59.402 66.667 6.95 0.00 0.00 4.35
692 2399 2.190578 GATCCAGGACCCAAGCCG 59.809 66.667 0.00 0.00 0.00 5.52
693 2400 3.406595 GATCCAGGACCCAAGCCGG 62.407 68.421 0.00 0.00 0.00 6.13
725 2432 4.445699 GCCTAGGGCGTGAAGATG 57.554 61.111 11.72 0.00 39.62 2.90
726 2433 1.823295 GCCTAGGGCGTGAAGATGA 59.177 57.895 11.72 0.00 39.62 2.92
727 2434 0.178068 GCCTAGGGCGTGAAGATGAA 59.822 55.000 11.72 0.00 39.62 2.57
728 2435 1.808133 GCCTAGGGCGTGAAGATGAAG 60.808 57.143 11.72 0.00 39.62 3.02
729 2436 1.482593 CCTAGGGCGTGAAGATGAAGT 59.517 52.381 0.00 0.00 0.00 3.01
730 2437 2.693591 CCTAGGGCGTGAAGATGAAGTA 59.306 50.000 0.00 0.00 0.00 2.24
731 2438 2.674796 AGGGCGTGAAGATGAAGTAC 57.325 50.000 0.00 0.00 0.00 2.73
732 2439 2.180276 AGGGCGTGAAGATGAAGTACT 58.820 47.619 0.00 0.00 0.00 2.73
733 2440 2.567615 AGGGCGTGAAGATGAAGTACTT 59.432 45.455 8.13 8.13 0.00 2.24
734 2441 2.930682 GGGCGTGAAGATGAAGTACTTC 59.069 50.000 25.73 25.73 41.67 3.01
735 2442 2.930682 GGCGTGAAGATGAAGTACTTCC 59.069 50.000 28.43 16.39 40.92 3.46
736 2443 3.368531 GGCGTGAAGATGAAGTACTTCCT 60.369 47.826 28.43 20.95 40.92 3.36
737 2444 4.246458 GCGTGAAGATGAAGTACTTCCTT 58.754 43.478 28.43 24.12 40.92 3.36
738 2445 4.327627 GCGTGAAGATGAAGTACTTCCTTC 59.672 45.833 29.30 29.30 40.92 3.46
746 2453 5.135508 TGAAGTACTTCCTTCACTGTAGC 57.864 43.478 28.43 4.43 44.39 3.58
747 2454 4.587262 TGAAGTACTTCCTTCACTGTAGCA 59.413 41.667 28.43 6.89 44.39 3.49
748 2455 5.246203 TGAAGTACTTCCTTCACTGTAGCAT 59.754 40.000 28.43 0.00 44.39 3.79
749 2456 6.436218 TGAAGTACTTCCTTCACTGTAGCATA 59.564 38.462 28.43 5.28 44.39 3.14
750 2457 7.124298 TGAAGTACTTCCTTCACTGTAGCATAT 59.876 37.037 28.43 0.00 44.39 1.78
751 2458 7.425224 AGTACTTCCTTCACTGTAGCATATT 57.575 36.000 0.00 0.00 0.00 1.28
752 2459 7.852263 AGTACTTCCTTCACTGTAGCATATTT 58.148 34.615 0.00 0.00 0.00 1.40
753 2460 6.992063 ACTTCCTTCACTGTAGCATATTTG 57.008 37.500 0.00 0.00 0.00 2.32
754 2461 5.882557 ACTTCCTTCACTGTAGCATATTTGG 59.117 40.000 0.00 0.00 0.00 3.28
755 2462 4.780815 TCCTTCACTGTAGCATATTTGGG 58.219 43.478 0.00 0.00 0.00 4.12
756 2463 3.316308 CCTTCACTGTAGCATATTTGGGC 59.684 47.826 0.00 0.00 0.00 5.36
757 2464 3.643199 TCACTGTAGCATATTTGGGCA 57.357 42.857 0.00 0.00 0.00 5.36
758 2465 3.278574 TCACTGTAGCATATTTGGGCAC 58.721 45.455 0.00 0.00 0.00 5.01
759 2466 3.054434 TCACTGTAGCATATTTGGGCACT 60.054 43.478 0.00 0.00 0.00 4.40
760 2467 4.163268 TCACTGTAGCATATTTGGGCACTA 59.837 41.667 0.00 0.00 0.00 2.74
761 2468 5.065914 CACTGTAGCATATTTGGGCACTAT 58.934 41.667 0.00 0.00 0.00 2.12
762 2469 6.042666 TCACTGTAGCATATTTGGGCACTATA 59.957 38.462 0.00 0.00 0.00 1.31
763 2470 6.369890 CACTGTAGCATATTTGGGCACTATAG 59.630 42.308 0.00 0.00 0.00 1.31
764 2471 6.043243 ACTGTAGCATATTTGGGCACTATAGT 59.957 38.462 0.00 0.00 30.30 2.12
765 2472 6.837312 TGTAGCATATTTGGGCACTATAGTT 58.163 36.000 1.56 0.00 0.00 2.24
766 2473 6.710295 TGTAGCATATTTGGGCACTATAGTTG 59.290 38.462 1.56 0.43 0.00 3.16
767 2474 5.694995 AGCATATTTGGGCACTATAGTTGT 58.305 37.500 1.56 0.00 0.00 3.32
768 2475 6.837312 AGCATATTTGGGCACTATAGTTGTA 58.163 36.000 1.56 0.00 0.00 2.41
769 2476 6.936900 AGCATATTTGGGCACTATAGTTGTAG 59.063 38.462 1.56 0.00 0.00 2.74
770 2477 6.710744 GCATATTTGGGCACTATAGTTGTAGT 59.289 38.462 1.56 0.00 35.34 2.73
771 2478 7.876068 GCATATTTGGGCACTATAGTTGTAGTA 59.124 37.037 1.56 0.00 33.29 1.82
772 2479 9.204570 CATATTTGGGCACTATAGTTGTAGTAC 57.795 37.037 1.56 0.00 33.29 2.73
773 2480 6.862469 TTTGGGCACTATAGTTGTAGTACT 57.138 37.500 1.56 0.00 33.29 2.73
774 2481 5.847111 TGGGCACTATAGTTGTAGTACTG 57.153 43.478 5.39 0.00 33.29 2.74
775 2482 5.266788 TGGGCACTATAGTTGTAGTACTGT 58.733 41.667 5.39 0.00 33.29 3.55
776 2483 6.425735 TGGGCACTATAGTTGTAGTACTGTA 58.574 40.000 5.39 0.00 33.29 2.74
777 2484 6.544931 TGGGCACTATAGTTGTAGTACTGTAG 59.455 42.308 5.39 0.00 42.33 2.74
779 2486 7.716998 GGGCACTATAGTTGTAGTACTGTAGTA 59.283 40.741 5.39 0.00 45.51 1.82
780 2487 8.772705 GGCACTATAGTTGTAGTACTGTAGTAG 58.227 40.741 5.39 8.34 45.51 2.57
781 2488 9.539825 GCACTATAGTTGTAGTACTGTAGTAGA 57.460 37.037 5.39 0.00 45.51 2.59
785 2492 8.961294 ATAGTTGTAGTACTGTAGTAGACTGG 57.039 38.462 19.19 0.00 0.00 4.00
786 2493 6.179040 AGTTGTAGTACTGTAGTAGACTGGG 58.821 44.000 5.39 0.00 0.00 4.45
787 2494 4.521146 TGTAGTACTGTAGTAGACTGGGC 58.479 47.826 5.39 0.00 0.00 5.36
788 2495 3.015675 AGTACTGTAGTAGACTGGGCC 57.984 52.381 0.00 0.00 0.00 5.80
789 2496 2.030371 GTACTGTAGTAGACTGGGCCC 58.970 57.143 17.59 17.59 0.00 5.80
790 2497 0.683504 ACTGTAGTAGACTGGGCCCG 60.684 60.000 19.37 14.85 0.00 6.13
791 2498 1.380785 TGTAGTAGACTGGGCCCGG 60.381 63.158 30.26 30.26 0.00 5.73
792 2499 2.132352 GTAGTAGACTGGGCCCGGG 61.132 68.421 34.33 23.00 0.00 5.73
793 2500 2.318966 TAGTAGACTGGGCCCGGGA 61.319 63.158 34.33 16.56 0.00 5.14
794 2501 2.578586 TAGTAGACTGGGCCCGGGAC 62.579 65.000 34.33 25.86 0.00 4.46
795 2502 3.680196 TAGACTGGGCCCGGGACT 61.680 66.667 34.33 30.37 0.00 3.85
796 2503 3.248248 TAGACTGGGCCCGGGACTT 62.248 63.158 34.33 13.95 0.00 3.01
797 2504 4.410400 GACTGGGCCCGGGACTTG 62.410 72.222 34.33 21.69 0.00 3.16
801 2508 4.191015 GGGCCCGGGACTTGGATC 62.191 72.222 29.76 3.66 0.00 3.36
802 2509 3.407967 GGCCCGGGACTTGGATCA 61.408 66.667 29.31 0.00 0.00 2.92
803 2510 2.674754 GCCCGGGACTTGGATCAA 59.325 61.111 29.31 0.00 0.00 2.57
804 2511 1.227383 GCCCGGGACTTGGATCAAT 59.773 57.895 29.31 0.00 0.00 2.57
805 2512 0.819666 GCCCGGGACTTGGATCAATC 60.820 60.000 29.31 0.00 0.00 2.67
814 2521 4.787871 GGATCAATCCTGGCTCCG 57.212 61.111 1.59 0.00 43.73 4.63
815 2522 1.599240 GGATCAATCCTGGCTCCGC 60.599 63.158 1.59 0.00 43.73 5.54
825 2532 4.321966 GGCTCCGCCCCTGATAGC 62.322 72.222 0.00 0.00 44.06 2.97
826 2533 3.550431 GCTCCGCCCCTGATAGCA 61.550 66.667 0.00 0.00 33.38 3.49
827 2534 2.423446 CTCCGCCCCTGATAGCAC 59.577 66.667 0.00 0.00 0.00 4.40
828 2535 2.364973 TCCGCCCCTGATAGCACA 60.365 61.111 0.00 0.00 0.00 4.57
829 2536 2.203070 CCGCCCCTGATAGCACAC 60.203 66.667 0.00 0.00 0.00 3.82
830 2537 2.203070 CGCCCCTGATAGCACACC 60.203 66.667 0.00 0.00 0.00 4.16
831 2538 2.203070 GCCCCTGATAGCACACCG 60.203 66.667 0.00 0.00 0.00 4.94
832 2539 2.731571 GCCCCTGATAGCACACCGA 61.732 63.158 0.00 0.00 0.00 4.69
833 2540 1.443407 CCCCTGATAGCACACCGAG 59.557 63.158 0.00 0.00 0.00 4.63
834 2541 1.443407 CCCTGATAGCACACCGAGG 59.557 63.158 0.00 0.00 0.00 4.63
839 2546 0.104855 GATAGCACACCGAGGATGCA 59.895 55.000 19.53 0.00 41.97 3.96
842 2549 2.528743 GCACACCGAGGATGCATCG 61.529 63.158 20.15 10.86 39.23 3.84
912 2619 6.356556 TGTGTAGCTAACCATGCAAAGATAT 58.643 36.000 0.00 0.00 0.00 1.63
914 2621 6.483307 GTGTAGCTAACCATGCAAAGATATCA 59.517 38.462 5.32 0.00 0.00 2.15
951 2660 2.006888 CGGAGTTTTATGCGATGGTGT 58.993 47.619 0.00 0.00 35.89 4.16
974 2683 6.878923 TGTTTATGTGGAAGAACTCATTCGAT 59.121 34.615 0.00 0.00 40.04 3.59
982 2691 6.707608 TGGAAGAACTCATTCGATTATGATGG 59.292 38.462 0.39 0.00 40.04 3.51
1005 2714 8.954834 TGGATTTTACCATGCCATTCTAATAT 57.045 30.769 0.00 0.00 34.77 1.28
1015 2724 6.367374 TGCCATTCTAATATATCCCACGAA 57.633 37.500 0.00 0.00 0.00 3.85
1019 2728 7.225538 GCCATTCTAATATATCCCACGAATCAG 59.774 40.741 0.00 0.00 0.00 2.90
1022 2731 6.867550 TCTAATATATCCCACGAATCAGCAG 58.132 40.000 0.00 0.00 0.00 4.24
1045 2754 2.096248 TCTCCACCACACAAACAAACC 58.904 47.619 0.00 0.00 0.00 3.27
1061 2770 6.478512 AACAAACCAATAGTTTCCACATGT 57.521 33.333 0.00 0.00 45.85 3.21
1073 2782 6.795399 AGTTTCCACATGTGTTTAAGACTTG 58.205 36.000 23.79 5.19 0.00 3.16
1078 2787 4.516698 CACATGTGTTTAAGACTTGCTCCT 59.483 41.667 18.03 0.00 0.00 3.69
1085 2794 9.344772 TGTGTTTAAGACTTGCTCCTATTTTAA 57.655 29.630 0.00 0.00 0.00 1.52
1092 2801 8.950208 AGACTTGCTCCTATTTTAATAGTGAC 57.050 34.615 8.30 0.00 37.30 3.67
1093 2802 7.988028 AGACTTGCTCCTATTTTAATAGTGACC 59.012 37.037 8.30 0.30 37.30 4.02
1138 2857 1.016627 CTGCATGTTCCGTGTATGGG 58.983 55.000 0.00 0.00 0.00 4.00
1266 2985 3.181463 ACAACAGGTACCGACTGCTTTAA 60.181 43.478 6.18 0.00 39.55 1.52
1291 3010 3.448686 GTTGATCATCGACAGTCCGAAT 58.551 45.455 0.00 0.00 42.22 3.34
1341 3060 2.821969 AGACCTGCAATCATCCAAACAC 59.178 45.455 0.79 0.00 0.00 3.32
1343 3062 1.894466 CCTGCAATCATCCAAACACCA 59.106 47.619 0.00 0.00 0.00 4.17
1359 3078 4.073293 ACACCAAGAACGAATTCACTCT 57.927 40.909 6.22 3.45 37.29 3.24
1374 3093 3.664107 TCACTCTCCGAATCCAACAAAG 58.336 45.455 0.00 0.00 0.00 2.77
1377 3096 3.071023 ACTCTCCGAATCCAACAAAGTCA 59.929 43.478 0.00 0.00 0.00 3.41
1415 3134 3.056322 TGAACTTCCTTTAGCCGACTACC 60.056 47.826 0.00 0.00 0.00 3.18
1425 3144 0.389757 GCCGACTACCCTCCATCTTC 59.610 60.000 0.00 0.00 0.00 2.87
1426 3145 2.030045 GCCGACTACCCTCCATCTTCT 61.030 57.143 0.00 0.00 0.00 2.85
1427 3146 2.389715 CCGACTACCCTCCATCTTCTT 58.610 52.381 0.00 0.00 0.00 2.52
1431 3150 4.027437 GACTACCCTCCATCTTCTTCACT 58.973 47.826 0.00 0.00 0.00 3.41
1434 3153 3.108376 ACCCTCCATCTTCTTCACTACC 58.892 50.000 0.00 0.00 0.00 3.18
1444 3163 5.869579 TCTTCTTCACTACCTGCAGAATTT 58.130 37.500 17.39 0.00 0.00 1.82
1824 3546 4.095400 TGGAGGAGGAGGAGGCCC 62.095 72.222 0.00 0.00 0.00 5.80
1981 3703 1.032114 GCCGGGGATTTCTTGAGGTG 61.032 60.000 2.18 0.00 0.00 4.00
2087 3815 1.566298 ATGGTCTGGTTCAGGGAGGC 61.566 60.000 0.00 0.00 31.51 4.70
2147 3875 3.307762 GGGTGGAGATTAGACAGCTTGTT 60.308 47.826 0.00 0.00 33.46 2.83
2178 3906 1.471684 GTTCAGAGGCTGCAGGAAATG 59.528 52.381 17.12 0.00 0.00 2.32
2207 3935 4.460731 TCATTGTAATCGTGCCAATCCAAA 59.539 37.500 0.00 0.00 0.00 3.28
2216 3944 1.177401 GCCAATCCAAAGGAGGTGTC 58.823 55.000 0.00 0.00 34.05 3.67
2225 3953 1.428869 AAGGAGGTGTCAGTTCAGCT 58.571 50.000 0.00 0.00 46.66 4.24
2341 4069 7.174946 GTGATTTCTTACAGGTTCTGATGGAAA 59.825 37.037 1.59 8.46 35.51 3.13
2423 4151 1.657804 AGATGGTCGGGGAAGAAGTT 58.342 50.000 0.00 0.00 0.00 2.66
2441 4169 1.134670 GTTCAGGGAACAGGATCTCGG 60.135 57.143 4.33 0.00 41.62 4.63
2473 4207 3.390521 CAGTAGGACTGGCCGCCA 61.391 66.667 12.67 12.67 42.35 5.69
2497 4241 1.116536 TGACCTTGCGGTGGTAGTCA 61.117 55.000 0.00 0.00 45.73 3.41
2582 4338 4.142271 GGACATGTGTGTGTTTTTGAAGGA 60.142 41.667 1.15 0.00 39.09 3.36
2618 4374 6.941857 TCATTATATATGTGGCGCTAAAGGA 58.058 36.000 7.64 0.00 0.00 3.36
2621 4377 8.677300 CATTATATATGTGGCGCTAAAGGAATT 58.323 33.333 7.64 0.00 0.00 2.17
2735 4497 5.241506 TGACCTGAGATCAAAATTCCAACAC 59.758 40.000 0.00 0.00 0.00 3.32
2736 4498 5.388654 ACCTGAGATCAAAATTCCAACACT 58.611 37.500 0.00 0.00 0.00 3.55
2759 4521 4.142038 AGCCAGTTTTAACTTGGTCGAAT 58.858 39.130 0.00 0.00 37.08 3.34
2763 4525 4.378616 CAGTTTTAACTTGGTCGAATTGCG 59.621 41.667 0.00 0.00 37.08 4.85
2773 4535 2.378445 TCGAATTGCGAGTTGGATGA 57.622 45.000 0.00 0.00 45.59 2.92
2775 4537 2.609002 TCGAATTGCGAGTTGGATGATG 59.391 45.455 0.00 0.00 45.59 3.07
2776 4538 2.609002 CGAATTGCGAGTTGGATGATGA 59.391 45.455 0.00 0.00 44.57 2.92
2777 4539 3.063861 CGAATTGCGAGTTGGATGATGAA 59.936 43.478 0.00 0.00 44.57 2.57
2778 4540 4.346129 GAATTGCGAGTTGGATGATGAAC 58.654 43.478 0.00 0.00 0.00 3.18
2781 4543 4.135747 TGCGAGTTGGATGATGAACATA 57.864 40.909 0.00 0.00 39.56 2.29
2783 4545 3.248602 GCGAGTTGGATGATGAACATACC 59.751 47.826 0.00 0.00 38.98 2.73
2784 4546 3.490896 CGAGTTGGATGATGAACATACCG 59.509 47.826 0.00 0.00 38.98 4.02
2785 4547 4.442706 GAGTTGGATGATGAACATACCGT 58.557 43.478 0.00 0.00 38.98 4.83
2786 4548 4.191544 AGTTGGATGATGAACATACCGTG 58.808 43.478 0.00 0.00 38.98 4.94
2787 4549 4.081142 AGTTGGATGATGAACATACCGTGA 60.081 41.667 0.00 0.00 38.98 4.35
2788 4550 4.687901 TGGATGATGAACATACCGTGAT 57.312 40.909 0.00 0.00 38.98 3.06
2789 4551 4.631131 TGGATGATGAACATACCGTGATC 58.369 43.478 0.00 0.00 38.98 2.92
2790 4552 4.100808 TGGATGATGAACATACCGTGATCA 59.899 41.667 0.00 0.00 42.79 2.92
2791 4553 4.687948 GGATGATGAACATACCGTGATCAG 59.312 45.833 0.00 0.00 42.04 2.90
2813 4575 2.346541 GGCCCTCAAAGCTGCCTTC 61.347 63.158 3.33 0.00 40.77 3.46
2814 4576 1.303970 GCCCTCAAAGCTGCCTTCT 60.304 57.895 0.00 0.00 0.00 2.85
2815 4577 0.035056 GCCCTCAAAGCTGCCTTCTA 60.035 55.000 0.00 0.00 0.00 2.10
2819 4962 2.686915 CCTCAAAGCTGCCTTCTATTGG 59.313 50.000 0.00 0.00 0.00 3.16
2835 4978 5.741011 TCTATTGGTCCCAAGTGTATTGTC 58.259 41.667 4.87 0.00 39.47 3.18
2840 4983 3.074412 GTCCCAAGTGTATTGTCCACTG 58.926 50.000 0.00 0.00 42.17 3.66
2894 5072 8.820153 AAGTTACAGTACTACTAGGTAGCATT 57.180 34.615 0.00 0.00 39.51 3.56
2900 5078 7.148052 ACAGTACTACTAGGTAGCATTCAGTTG 60.148 40.741 0.00 0.00 39.51 3.16
2901 5079 5.012328 ACTACTAGGTAGCATTCAGTTGC 57.988 43.478 4.82 0.00 39.51 4.17
2916 5094 1.134729 AGTTGCCAACTGGTTGCTTTG 60.135 47.619 9.77 0.00 41.01 2.77
3033 5211 2.968156 CCGTTGAACGCCGGTCAA 60.968 61.111 14.54 14.54 40.91 3.18
3034 5212 2.549282 CGTTGAACGCCGGTCAAG 59.451 61.111 19.30 8.77 33.65 3.02
3035 5213 2.241880 CGTTGAACGCCGGTCAAGT 61.242 57.895 19.30 0.00 33.65 3.16
3036 5214 1.768112 CGTTGAACGCCGGTCAAGTT 61.768 55.000 19.30 4.81 33.65 2.66
3037 5215 1.219646 GTTGAACGCCGGTCAAGTTA 58.780 50.000 19.30 0.00 0.00 2.24
3038 5216 1.598601 GTTGAACGCCGGTCAAGTTAA 59.401 47.619 19.30 0.00 0.00 2.01
3039 5217 1.950828 TGAACGCCGGTCAAGTTAAA 58.049 45.000 0.39 0.00 0.00 1.52
3040 5218 2.286872 TGAACGCCGGTCAAGTTAAAA 58.713 42.857 0.39 0.00 0.00 1.52
3041 5219 2.879646 TGAACGCCGGTCAAGTTAAAAT 59.120 40.909 0.39 0.00 0.00 1.82
3050 5228 4.614993 CGGTCAAGTTAAAATGCAATCGGT 60.615 41.667 0.00 0.00 0.00 4.69
3162 5340 2.233186 AGTTCAGGCGGGTTAGTTAGAC 59.767 50.000 0.00 0.00 0.00 2.59
3177 5355 9.682465 GGTTAGTTAGACCCATCTTTTATCTTT 57.318 33.333 0.00 0.00 36.29 2.52
3221 5399 7.260603 GGAAATCTTATTCCAAAGTCACATGG 58.739 38.462 0.00 0.00 46.70 3.66
3222 5400 7.093771 GGAAATCTTATTCCAAAGTCACATGGT 60.094 37.037 0.00 0.00 46.70 3.55
3223 5401 7.781324 AATCTTATTCCAAAGTCACATGGTT 57.219 32.000 0.00 0.00 37.94 3.67
3224 5402 8.877864 AATCTTATTCCAAAGTCACATGGTTA 57.122 30.769 0.00 0.00 37.94 2.85
3225 5403 7.681939 TCTTATTCCAAAGTCACATGGTTAC 57.318 36.000 0.00 0.00 37.94 2.50
3226 5404 7.227873 TCTTATTCCAAAGTCACATGGTTACA 58.772 34.615 0.00 0.00 37.94 2.41
3227 5405 5.964958 ATTCCAAAGTCACATGGTTACAG 57.035 39.130 0.00 0.00 37.94 2.74
3228 5406 4.431416 TCCAAAGTCACATGGTTACAGT 57.569 40.909 0.00 0.00 37.94 3.55
3229 5407 4.385825 TCCAAAGTCACATGGTTACAGTC 58.614 43.478 0.00 0.00 37.94 3.51
3230 5408 3.186409 CCAAAGTCACATGGTTACAGTCG 59.814 47.826 0.00 0.00 31.84 4.18
3231 5409 4.055360 CAAAGTCACATGGTTACAGTCGA 58.945 43.478 0.00 0.00 0.00 4.20
3232 5410 3.577649 AGTCACATGGTTACAGTCGAG 57.422 47.619 0.00 0.00 0.00 4.04
3233 5411 3.154710 AGTCACATGGTTACAGTCGAGA 58.845 45.455 0.00 0.00 0.00 4.04
3234 5412 3.191581 AGTCACATGGTTACAGTCGAGAG 59.808 47.826 0.00 0.00 0.00 3.20
3235 5413 2.492088 TCACATGGTTACAGTCGAGAGG 59.508 50.000 0.00 0.00 0.00 3.69
3236 5414 1.204941 ACATGGTTACAGTCGAGAGGC 59.795 52.381 0.00 0.00 0.00 4.70
3237 5415 1.204704 CATGGTTACAGTCGAGAGGCA 59.795 52.381 0.00 0.00 38.99 4.75
3238 5416 1.334160 TGGTTACAGTCGAGAGGCAA 58.666 50.000 0.00 0.00 38.99 4.52
3239 5417 1.899814 TGGTTACAGTCGAGAGGCAAT 59.100 47.619 0.00 0.00 38.99 3.56
3240 5418 3.093814 TGGTTACAGTCGAGAGGCAATA 58.906 45.455 0.00 0.00 38.99 1.90
3241 5419 3.512329 TGGTTACAGTCGAGAGGCAATAA 59.488 43.478 0.00 0.00 38.99 1.40
3242 5420 4.113354 GGTTACAGTCGAGAGGCAATAAG 58.887 47.826 0.00 0.00 38.99 1.73
3243 5421 4.381718 GGTTACAGTCGAGAGGCAATAAGT 60.382 45.833 0.00 0.00 38.99 2.24
3244 5422 3.512033 ACAGTCGAGAGGCAATAAGTC 57.488 47.619 0.00 0.00 38.99 3.01
3245 5423 2.166664 ACAGTCGAGAGGCAATAAGTCC 59.833 50.000 0.00 0.00 38.99 3.85
3246 5424 2.428890 CAGTCGAGAGGCAATAAGTCCT 59.571 50.000 0.00 0.00 38.99 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.031721 CGTCTAGGCCGGATGGTAAC 59.968 60.000 5.05 0.00 37.67 2.50
13 14 1.741327 GCGTCTAGGCCGGATGGTAA 61.741 60.000 5.05 0.00 37.67 2.85
14 15 2.198287 GCGTCTAGGCCGGATGGTA 61.198 63.158 5.05 0.00 37.67 3.25
15 16 3.537874 GCGTCTAGGCCGGATGGT 61.538 66.667 5.05 0.00 37.67 3.55
16 17 3.536917 TGCGTCTAGGCCGGATGG 61.537 66.667 5.05 0.00 38.77 3.51
17 18 2.279517 GTGCGTCTAGGCCGGATG 60.280 66.667 5.05 14.10 0.00 3.51
18 19 2.758327 TGTGCGTCTAGGCCGGAT 60.758 61.111 5.05 0.00 0.00 4.18
19 20 3.449227 CTGTGCGTCTAGGCCGGA 61.449 66.667 5.05 0.00 0.00 5.14
20 21 3.296709 AACTGTGCGTCTAGGCCGG 62.297 63.158 0.00 0.00 0.00 6.13
21 22 1.805945 GAACTGTGCGTCTAGGCCG 60.806 63.158 0.00 0.00 0.00 6.13
22 23 1.805945 CGAACTGTGCGTCTAGGCC 60.806 63.158 0.00 0.00 0.00 5.19
23 24 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
24 25 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
25 26 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
26 27 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
27 28 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
28 29 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
29 30 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
31 32 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
40 41 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
41 42 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
42 43 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
43 44 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
44 45 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
45 46 1.902432 GACGGATCTCGGGTAGGGG 60.902 68.421 8.20 0.00 44.45 4.79
46 47 2.259439 CGACGGATCTCGGGTAGGG 61.259 68.421 8.20 0.00 44.45 3.53
47 48 3.341848 CGACGGATCTCGGGTAGG 58.658 66.667 8.20 0.00 44.45 3.18
53 54 0.989890 GTCAAAACCGACGGATCTCG 59.010 55.000 23.38 4.82 45.88 4.04
54 55 1.725164 GTGTCAAAACCGACGGATCTC 59.275 52.381 23.38 6.28 38.84 2.75
55 56 1.607251 GGTGTCAAAACCGACGGATCT 60.607 52.381 23.38 0.95 38.84 2.75
56 57 0.794473 GGTGTCAAAACCGACGGATC 59.206 55.000 23.38 0.00 38.84 3.36
57 58 2.922779 GGTGTCAAAACCGACGGAT 58.077 52.632 23.38 5.64 38.84 4.18
58 59 4.442018 GGTGTCAAAACCGACGGA 57.558 55.556 23.38 0.00 38.84 4.69
64 65 1.792118 GCCCTGTCGGTGTCAAAACC 61.792 60.000 0.00 0.00 36.82 3.27
65 66 1.652563 GCCCTGTCGGTGTCAAAAC 59.347 57.895 0.00 0.00 0.00 2.43
66 67 1.890041 CGCCCTGTCGGTGTCAAAA 60.890 57.895 0.00 0.00 37.36 2.44
67 68 2.280524 CGCCCTGTCGGTGTCAAA 60.281 61.111 0.00 0.00 37.36 2.69
77 78 1.380112 GGAGACCTAGACGCCCTGT 60.380 63.158 0.00 0.00 0.00 4.00
78 79 3.527641 GGAGACCTAGACGCCCTG 58.472 66.667 0.00 0.00 0.00 4.45
89 90 2.037527 ACCGTCTGGAGGGAGACC 59.962 66.667 15.07 0.00 46.12 3.85
90 91 2.352032 CCACCGTCTGGAGGGAGAC 61.352 68.421 15.07 0.00 43.95 3.36
100 101 0.335361 ATCTGTAGGACCCACCGTCT 59.665 55.000 0.00 0.00 44.74 4.18
102 103 0.335361 AGATCTGTAGGACCCACCGT 59.665 55.000 0.00 0.00 44.74 4.83
104 105 1.763545 GGAAGATCTGTAGGACCCACC 59.236 57.143 0.00 0.00 39.35 4.61
132 133 2.946346 GCCCAACCGGACGTAAGGA 61.946 63.158 9.46 0.00 46.39 3.36
215 220 5.132897 TGCAAACTGTTGTTTCTCACTTT 57.867 34.783 0.00 0.00 43.75 2.66
222 227 5.062183 GGTCTCTTTTGCAAACTGTTGTTTC 59.938 40.000 12.39 0.00 43.75 2.78
226 231 3.447742 GGGTCTCTTTTGCAAACTGTTG 58.552 45.455 12.39 6.18 37.83 3.33
236 241 1.070134 TCAGTCCACGGGTCTCTTTTG 59.930 52.381 0.00 0.00 0.00 2.44
239 244 0.898320 CATCAGTCCACGGGTCTCTT 59.102 55.000 0.00 0.00 0.00 2.85
259 264 5.263968 AGGTGTACCTGAGATGTTATTCG 57.736 43.478 2.06 0.00 46.55 3.34
282 287 7.656542 AGAGTAGACTAACTTTTTAGTTGGTGC 59.343 37.037 11.05 4.57 46.67 5.01
320 326 0.181114 GTGGGAGTGATATGGCTGCA 59.819 55.000 0.50 0.00 0.00 4.41
327 333 0.691078 AGCCGGTGTGGGAGTGATAT 60.691 55.000 1.90 0.00 38.63 1.63
330 336 2.847234 AAGCCGGTGTGGGAGTGA 60.847 61.111 1.90 0.00 38.63 3.41
432 438 4.021544 GGCATATGTGGAAACAAAGGAACA 60.022 41.667 4.29 0.00 46.06 3.18
459 466 4.081365 TCAACTCAATGGTAATCGCCACTA 60.081 41.667 0.00 0.00 41.94 2.74
460 467 3.009723 CAACTCAATGGTAATCGCCACT 58.990 45.455 0.00 0.00 41.94 4.00
516 523 4.263374 CCATAGAATGATGGGCTCAGACAT 60.263 45.833 0.00 0.00 42.46 3.06
521 528 4.794311 TTTCCATAGAATGATGGGCTCA 57.206 40.909 0.00 0.00 45.67 4.26
529 536 8.827832 AGGTCAATGATTTTTCCATAGAATGA 57.172 30.769 0.00 0.00 0.00 2.57
539 546 9.358872 GGTCATTTTAGAGGTCAATGATTTTTC 57.641 33.333 0.00 0.00 38.77 2.29
557 564 0.823356 ACACGCTGCAGGGTCATTTT 60.823 50.000 31.41 12.13 39.30 1.82
584 599 1.089481 CGCGACAGGTATGGCATTGT 61.089 55.000 4.78 3.76 31.90 2.71
586 601 2.180204 GCGCGACAGGTATGGCATT 61.180 57.895 12.10 0.00 31.90 3.56
605 2312 1.982612 TTCTCAGTCAATGCGTCGAG 58.017 50.000 0.00 0.00 0.00 4.04
607 2314 1.995484 ACATTCTCAGTCAATGCGTCG 59.005 47.619 0.00 0.00 35.02 5.12
638 2345 3.503363 ACACATGTTTGCACGATGAAGAT 59.497 39.130 0.00 0.00 0.00 2.40
668 2375 3.083997 GGTCCTGGATCCGCCACT 61.084 66.667 7.39 0.00 43.33 4.00
670 2377 4.731853 TGGGTCCTGGATCCGCCA 62.732 66.667 20.81 0.56 46.96 5.69
673 2380 2.190578 GCTTGGGTCCTGGATCCG 59.809 66.667 20.81 8.91 35.15 4.18
674 2381 2.597903 GGCTTGGGTCCTGGATCC 59.402 66.667 19.55 19.55 32.52 3.36
675 2382 2.190578 CGGCTTGGGTCCTGGATC 59.809 66.667 0.00 0.00 0.00 3.36
676 2383 3.411517 CCGGCTTGGGTCCTGGAT 61.412 66.667 0.00 0.00 0.00 3.41
708 2415 0.178068 TTCATCTTCACGCCCTAGGC 59.822 55.000 2.05 0.00 46.75 3.93
709 2416 1.482593 ACTTCATCTTCACGCCCTAGG 59.517 52.381 0.06 0.06 0.00 3.02
710 2417 2.969628 ACTTCATCTTCACGCCCTAG 57.030 50.000 0.00 0.00 0.00 3.02
711 2418 3.362706 AGTACTTCATCTTCACGCCCTA 58.637 45.455 0.00 0.00 0.00 3.53
712 2419 2.180276 AGTACTTCATCTTCACGCCCT 58.820 47.619 0.00 0.00 0.00 5.19
713 2420 2.674796 AGTACTTCATCTTCACGCCC 57.325 50.000 0.00 0.00 0.00 6.13
714 2421 2.930682 GGAAGTACTTCATCTTCACGCC 59.069 50.000 31.30 11.56 40.98 5.68
715 2422 3.851098 AGGAAGTACTTCATCTTCACGC 58.149 45.455 31.30 14.32 40.98 5.34
725 2432 5.135508 TGCTACAGTGAAGGAAGTACTTC 57.864 43.478 24.73 24.73 45.49 3.01
726 2433 5.746990 ATGCTACAGTGAAGGAAGTACTT 57.253 39.130 8.13 8.13 0.00 2.24
727 2434 7.425224 AATATGCTACAGTGAAGGAAGTACT 57.575 36.000 0.00 0.00 0.00 2.73
728 2435 7.011482 CCAAATATGCTACAGTGAAGGAAGTAC 59.989 40.741 0.00 0.00 0.00 2.73
729 2436 7.047891 CCAAATATGCTACAGTGAAGGAAGTA 58.952 38.462 0.00 0.00 0.00 2.24
730 2437 5.882557 CCAAATATGCTACAGTGAAGGAAGT 59.117 40.000 0.00 0.00 0.00 3.01
731 2438 5.297776 CCCAAATATGCTACAGTGAAGGAAG 59.702 44.000 0.00 0.00 0.00 3.46
732 2439 5.192927 CCCAAATATGCTACAGTGAAGGAA 58.807 41.667 0.00 0.00 0.00 3.36
733 2440 4.780815 CCCAAATATGCTACAGTGAAGGA 58.219 43.478 0.00 0.00 0.00 3.36
734 2441 3.316308 GCCCAAATATGCTACAGTGAAGG 59.684 47.826 0.00 0.00 0.00 3.46
735 2442 3.947196 TGCCCAAATATGCTACAGTGAAG 59.053 43.478 0.00 0.00 0.00 3.02
736 2443 3.694072 GTGCCCAAATATGCTACAGTGAA 59.306 43.478 0.00 0.00 0.00 3.18
737 2444 3.054434 AGTGCCCAAATATGCTACAGTGA 60.054 43.478 0.00 0.00 0.00 3.41
738 2445 3.282021 AGTGCCCAAATATGCTACAGTG 58.718 45.455 0.00 0.00 0.00 3.66
739 2446 3.652057 AGTGCCCAAATATGCTACAGT 57.348 42.857 0.00 0.00 0.00 3.55
740 2447 6.467677 ACTATAGTGCCCAAATATGCTACAG 58.532 40.000 4.10 0.00 0.00 2.74
741 2448 6.433847 ACTATAGTGCCCAAATATGCTACA 57.566 37.500 4.10 0.00 0.00 2.74
742 2449 6.710744 ACAACTATAGTGCCCAAATATGCTAC 59.289 38.462 6.06 0.00 0.00 3.58
743 2450 6.837312 ACAACTATAGTGCCCAAATATGCTA 58.163 36.000 6.06 0.00 0.00 3.49
744 2451 5.694995 ACAACTATAGTGCCCAAATATGCT 58.305 37.500 6.06 0.00 0.00 3.79
745 2452 6.710744 ACTACAACTATAGTGCCCAAATATGC 59.289 38.462 6.06 0.00 34.02 3.14
746 2453 9.204570 GTACTACAACTATAGTGCCCAAATATG 57.795 37.037 6.06 0.01 36.09 1.78
747 2454 9.155785 AGTACTACAACTATAGTGCCCAAATAT 57.844 33.333 6.06 0.00 38.23 1.28
748 2455 8.418662 CAGTACTACAACTATAGTGCCCAAATA 58.581 37.037 6.06 0.00 38.23 1.40
749 2456 7.093024 ACAGTACTACAACTATAGTGCCCAAAT 60.093 37.037 6.06 0.00 38.23 2.32
750 2457 6.211986 ACAGTACTACAACTATAGTGCCCAAA 59.788 38.462 6.06 0.00 38.23 3.28
751 2458 5.718130 ACAGTACTACAACTATAGTGCCCAA 59.282 40.000 6.06 0.00 38.23 4.12
752 2459 5.266788 ACAGTACTACAACTATAGTGCCCA 58.733 41.667 6.06 0.00 38.23 5.36
753 2460 5.848833 ACAGTACTACAACTATAGTGCCC 57.151 43.478 6.06 0.00 38.23 5.36
754 2461 7.565323 ACTACAGTACTACAACTATAGTGCC 57.435 40.000 6.06 0.00 38.09 5.01
755 2462 9.539825 TCTACTACAGTACTACAACTATAGTGC 57.460 37.037 6.06 0.00 39.45 4.40
760 2467 7.992033 CCCAGTCTACTACAGTACTACAACTAT 59.008 40.741 0.00 0.00 0.00 2.12
761 2468 7.334090 CCCAGTCTACTACAGTACTACAACTA 58.666 42.308 0.00 0.00 0.00 2.24
762 2469 6.179040 CCCAGTCTACTACAGTACTACAACT 58.821 44.000 0.00 0.00 0.00 3.16
763 2470 5.163673 GCCCAGTCTACTACAGTACTACAAC 60.164 48.000 0.00 0.00 0.00 3.32
764 2471 4.946157 GCCCAGTCTACTACAGTACTACAA 59.054 45.833 0.00 0.00 0.00 2.41
765 2472 4.521146 GCCCAGTCTACTACAGTACTACA 58.479 47.826 0.00 0.00 0.00 2.74
766 2473 3.882288 GGCCCAGTCTACTACAGTACTAC 59.118 52.174 0.00 0.00 0.00 2.73
767 2474 3.117738 GGGCCCAGTCTACTACAGTACTA 60.118 52.174 19.95 0.00 0.00 1.82
768 2475 2.357986 GGGCCCAGTCTACTACAGTACT 60.358 54.545 19.95 0.00 0.00 2.73
769 2476 2.030371 GGGCCCAGTCTACTACAGTAC 58.970 57.143 19.95 0.00 0.00 2.73
770 2477 1.409241 CGGGCCCAGTCTACTACAGTA 60.409 57.143 24.92 0.00 0.00 2.74
771 2478 0.683504 CGGGCCCAGTCTACTACAGT 60.684 60.000 24.92 0.00 0.00 3.55
772 2479 1.392710 CCGGGCCCAGTCTACTACAG 61.393 65.000 24.92 0.00 0.00 2.74
773 2480 1.380785 CCGGGCCCAGTCTACTACA 60.381 63.158 24.92 0.00 0.00 2.74
774 2481 2.132352 CCCGGGCCCAGTCTACTAC 61.132 68.421 24.92 0.00 0.00 2.73
775 2482 2.281091 CCCGGGCCCAGTCTACTA 59.719 66.667 24.92 0.00 0.00 1.82
776 2483 3.680196 TCCCGGGCCCAGTCTACT 61.680 66.667 24.92 0.00 0.00 2.57
777 2484 3.468140 GTCCCGGGCCCAGTCTAC 61.468 72.222 24.92 8.33 0.00 2.59
778 2485 3.248248 AAGTCCCGGGCCCAGTCTA 62.248 63.158 24.92 0.00 0.00 2.59
779 2486 4.658786 AAGTCCCGGGCCCAGTCT 62.659 66.667 24.92 12.73 0.00 3.24
780 2487 4.410400 CAAGTCCCGGGCCCAGTC 62.410 72.222 24.92 10.38 0.00 3.51
784 2491 4.191015 GATCCAAGTCCCGGGCCC 62.191 72.222 18.49 13.57 0.00 5.80
785 2492 2.284515 ATTGATCCAAGTCCCGGGCC 62.285 60.000 18.49 3.47 0.00 5.80
786 2493 0.819666 GATTGATCCAAGTCCCGGGC 60.820 60.000 18.49 11.70 0.00 6.13
787 2494 0.179018 GGATTGATCCAAGTCCCGGG 60.179 60.000 16.85 16.85 46.38 5.73
788 2495 3.403936 GGATTGATCCAAGTCCCGG 57.596 57.895 5.14 0.00 46.38 5.73
810 2517 2.423446 GTGCTATCAGGGGCGGAG 59.577 66.667 0.00 0.00 0.00 4.63
811 2518 2.364973 TGTGCTATCAGGGGCGGA 60.365 61.111 0.00 0.00 0.00 5.54
812 2519 2.203070 GTGTGCTATCAGGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
813 2520 2.203070 GGTGTGCTATCAGGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
814 2521 2.203070 CGGTGTGCTATCAGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
815 2522 1.443407 CTCGGTGTGCTATCAGGGG 59.557 63.158 0.00 0.00 0.00 4.79
816 2523 1.043116 TCCTCGGTGTGCTATCAGGG 61.043 60.000 0.00 0.00 0.00 4.45
817 2524 1.043816 ATCCTCGGTGTGCTATCAGG 58.956 55.000 0.00 0.00 0.00 3.86
818 2525 1.871408 GCATCCTCGGTGTGCTATCAG 60.871 57.143 8.21 0.00 36.02 2.90
819 2526 0.104855 GCATCCTCGGTGTGCTATCA 59.895 55.000 8.21 0.00 36.02 2.15
820 2527 0.104855 TGCATCCTCGGTGTGCTATC 59.895 55.000 13.92 0.00 39.52 2.08
821 2528 0.761187 ATGCATCCTCGGTGTGCTAT 59.239 50.000 13.92 6.49 39.52 2.97
822 2529 0.104855 GATGCATCCTCGGTGTGCTA 59.895 55.000 16.23 5.02 39.52 3.49
823 2530 1.153289 GATGCATCCTCGGTGTGCT 60.153 57.895 16.23 0.00 39.52 4.40
824 2531 2.528743 CGATGCATCCTCGGTGTGC 61.529 63.158 20.87 8.44 39.26 4.57
825 2532 1.153568 ACGATGCATCCTCGGTGTG 60.154 57.895 20.87 6.75 40.37 3.82
826 2533 1.153568 CACGATGCATCCTCGGTGT 60.154 57.895 20.87 8.85 40.37 4.16
827 2534 0.460109 TTCACGATGCATCCTCGGTG 60.460 55.000 20.87 20.49 40.37 4.94
828 2535 0.179100 CTTCACGATGCATCCTCGGT 60.179 55.000 20.87 9.96 40.37 4.69
829 2536 0.179100 ACTTCACGATGCATCCTCGG 60.179 55.000 20.87 9.30 40.37 4.63
830 2537 1.645034 AACTTCACGATGCATCCTCG 58.355 50.000 20.87 13.71 41.77 4.63
831 2538 2.744202 ACAAACTTCACGATGCATCCTC 59.256 45.455 20.87 0.00 0.00 3.71
832 2539 2.485426 CACAAACTTCACGATGCATCCT 59.515 45.455 20.87 6.75 0.00 3.24
833 2540 2.855180 CACAAACTTCACGATGCATCC 58.145 47.619 20.87 3.71 0.00 3.51
834 2541 2.245096 GCACAAACTTCACGATGCATC 58.755 47.619 17.10 17.10 33.27 3.91
839 2546 1.148310 CTCGGCACAAACTTCACGAT 58.852 50.000 0.00 0.00 0.00 3.73
842 2549 1.282875 GGCTCGGCACAAACTTCAC 59.717 57.895 0.00 0.00 0.00 3.18
951 2660 7.921786 AATCGAATGAGTTCTTCCACATAAA 57.078 32.000 0.00 0.00 32.00 1.40
974 2683 7.510001 AGAATGGCATGGTAAAATCCATCATAA 59.490 33.333 0.00 0.00 45.23 1.90
988 2697 6.426587 GTGGGATATATTAGAATGGCATGGT 58.573 40.000 0.00 0.00 0.00 3.55
1002 2711 3.261643 TGCTGCTGATTCGTGGGATATAT 59.738 43.478 0.00 0.00 0.00 0.86
1005 2714 0.829990 TGCTGCTGATTCGTGGGATA 59.170 50.000 0.00 0.00 0.00 2.59
1006 2715 0.182061 ATGCTGCTGATTCGTGGGAT 59.818 50.000 0.00 0.00 0.00 3.85
1015 2724 0.107312 GTGGTGGAGATGCTGCTGAT 60.107 55.000 0.00 0.00 0.00 2.90
1019 2728 0.890542 TTGTGTGGTGGAGATGCTGC 60.891 55.000 0.00 0.00 0.00 5.25
1022 2731 1.317613 TGTTTGTGTGGTGGAGATGC 58.682 50.000 0.00 0.00 0.00 3.91
1045 2754 8.567948 AGTCTTAAACACATGTGGAAACTATTG 58.432 33.333 28.64 10.10 34.19 1.90
1073 2782 8.762426 CGTTTAGGTCACTATTAAAATAGGAGC 58.238 37.037 12.99 14.35 42.09 4.70
1092 2801 9.327529 CGTACTAGAAATATAAGAGCGTTTAGG 57.672 37.037 0.00 0.00 0.00 2.69
1093 2802 8.838961 GCGTACTAGAAATATAAGAGCGTTTAG 58.161 37.037 0.00 0.00 0.00 1.85
1138 2857 2.228822 ACATCACGGCAAGTTCAAATCC 59.771 45.455 0.00 0.00 0.00 3.01
1266 2985 3.448686 GGACTGTCGATGATCAACGAAT 58.551 45.455 26.79 16.48 40.12 3.34
1341 3060 2.668457 CGGAGAGTGAATTCGTTCTTGG 59.332 50.000 11.47 5.08 0.00 3.61
1343 3062 3.936372 TCGGAGAGTGAATTCGTTCTT 57.064 42.857 11.47 0.00 0.00 2.52
1359 3078 3.546724 TGTTGACTTTGTTGGATTCGGA 58.453 40.909 0.00 0.00 0.00 4.55
1374 3093 5.921408 AGTTCAGAGATTACGACTTGTTGAC 59.079 40.000 0.00 0.00 0.00 3.18
1377 3096 5.927115 GGAAGTTCAGAGATTACGACTTGTT 59.073 40.000 5.01 0.00 0.00 2.83
1415 3134 3.431486 GCAGGTAGTGAAGAAGATGGAGG 60.431 52.174 0.00 0.00 0.00 4.30
1425 3144 5.936054 CAGAAAATTCTGCAGGTAGTGAAG 58.064 41.667 15.13 0.00 46.97 3.02
1426 3145 5.947228 CAGAAAATTCTGCAGGTAGTGAA 57.053 39.130 15.13 0.00 46.97 3.18
1634 3356 4.441695 TCCAGGCTCTCGCTTGCG 62.442 66.667 8.87 8.87 41.48 4.85
1635 3357 2.511145 CTCCAGGCTCTCGCTTGC 60.511 66.667 0.00 0.00 41.48 4.01
1974 3696 2.431683 GGACTGCAGGCACCTCAA 59.568 61.111 23.90 0.00 0.00 3.02
2024 3746 1.375396 CTTCCCGACAATGGCGTCA 60.375 57.895 8.02 0.00 35.54 4.35
2096 3824 4.615815 GATCCCGAGCGCAGGCAT 62.616 66.667 11.47 3.61 43.41 4.40
2108 3836 2.812619 CCCGCTCTTCCTGGATCCC 61.813 68.421 9.90 0.00 0.00 3.85
2147 3875 4.763073 CAGCCTCTGAACATAATCACTGA 58.237 43.478 0.00 0.00 32.44 3.41
2178 3906 5.484173 TGGCACGATTACAATGAGAATTC 57.516 39.130 0.00 0.00 0.00 2.17
2194 3922 0.609131 ACCTCCTTTGGATTGGCACG 60.609 55.000 0.00 0.00 0.00 5.34
2207 3935 2.175202 CTAGCTGAACTGACACCTCCT 58.825 52.381 0.00 0.00 0.00 3.69
2216 3944 2.462456 TCCAACAGCTAGCTGAACTG 57.538 50.000 43.42 33.21 46.30 3.16
2225 3953 5.300792 CCCTAAAGTTTGTTTCCAACAGCTA 59.699 40.000 0.00 0.00 43.27 3.32
2311 4039 6.464222 TCAGAACCTGTAAGAAATCACGAAT 58.536 36.000 0.00 0.00 34.07 3.34
2341 4069 1.251251 GCATCAAGCAGGAACAAGGT 58.749 50.000 0.00 0.00 44.79 3.50
2423 4151 0.335019 TCCGAGATCCTGTTCCCTGA 59.665 55.000 0.00 0.00 0.00 3.86
2452 4180 4.162690 GGCCAGTCCTACTGCGGG 62.163 72.222 0.00 0.00 44.63 6.13
2497 4241 2.094286 CGCTCAAGGTGATCAGAAGACT 60.094 50.000 0.00 0.00 0.00 3.24
2582 4338 9.881649 CCACATATATAATGAGCAAGATGTACT 57.118 33.333 0.00 0.00 0.00 2.73
2604 4360 2.639065 CCTAATTCCTTTAGCGCCACA 58.361 47.619 2.29 0.00 36.71 4.17
2618 4374 3.418047 CTGTTGGTTTCGGTCCCTAATT 58.582 45.455 0.00 0.00 0.00 1.40
2621 4377 0.035739 GCTGTTGGTTTCGGTCCCTA 59.964 55.000 0.00 0.00 0.00 3.53
2735 4497 4.312443 TCGACCAAGTTAAAACTGGCTAG 58.688 43.478 0.00 0.00 39.66 3.42
2736 4498 4.339872 TCGACCAAGTTAAAACTGGCTA 57.660 40.909 0.00 0.00 39.66 3.93
2759 4521 2.777094 TGTTCATCATCCAACTCGCAA 58.223 42.857 0.00 0.00 0.00 4.85
2763 4525 4.271049 CACGGTATGTTCATCATCCAACTC 59.729 45.833 0.00 0.00 37.91 3.01
2768 4530 4.631131 TGATCACGGTATGTTCATCATCC 58.369 43.478 0.00 0.00 37.91 3.51
2769 4531 5.532557 TCTGATCACGGTATGTTCATCATC 58.467 41.667 0.00 0.00 36.62 2.92
2771 4533 4.402474 ACTCTGATCACGGTATGTTCATCA 59.598 41.667 0.00 0.00 36.62 3.07
2772 4534 4.742167 CACTCTGATCACGGTATGTTCATC 59.258 45.833 0.00 0.00 36.62 2.92
2773 4535 4.442052 CCACTCTGATCACGGTATGTTCAT 60.442 45.833 0.00 0.00 36.62 2.57
2775 4537 3.448686 CCACTCTGATCACGGTATGTTC 58.551 50.000 0.00 0.00 0.00 3.18
2776 4538 2.418746 GCCACTCTGATCACGGTATGTT 60.419 50.000 0.00 0.00 0.00 2.71
2777 4539 1.137086 GCCACTCTGATCACGGTATGT 59.863 52.381 0.00 0.00 0.00 2.29
2778 4540 1.539065 GGCCACTCTGATCACGGTATG 60.539 57.143 0.00 0.00 0.00 2.39
2781 4543 2.660064 GGGCCACTCTGATCACGGT 61.660 63.158 4.39 0.00 0.00 4.83
2783 4545 1.142748 GAGGGCCACTCTGATCACG 59.857 63.158 6.18 0.00 43.14 4.35
2784 4546 0.615331 TTGAGGGCCACTCTGATCAC 59.385 55.000 18.49 0.00 46.72 3.06
2785 4547 1.280133 CTTTGAGGGCCACTCTGATCA 59.720 52.381 18.49 0.00 46.72 2.92
2786 4548 2.016096 GCTTTGAGGGCCACTCTGATC 61.016 57.143 18.49 0.00 46.72 2.92
2787 4549 0.034670 GCTTTGAGGGCCACTCTGAT 60.035 55.000 18.49 0.00 46.72 2.90
2788 4550 1.130054 AGCTTTGAGGGCCACTCTGA 61.130 55.000 18.49 7.83 46.72 3.27
2789 4551 0.959372 CAGCTTTGAGGGCCACTCTG 60.959 60.000 18.49 11.49 46.72 3.35
2790 4552 1.377994 CAGCTTTGAGGGCCACTCT 59.622 57.895 18.49 1.38 46.72 3.24
2791 4553 2.338785 GCAGCTTTGAGGGCCACTC 61.339 63.158 6.18 9.80 46.78 3.51
2813 4575 4.881850 GGACAATACACTTGGGACCAATAG 59.118 45.833 3.94 3.10 35.20 1.73
2814 4576 4.289934 TGGACAATACACTTGGGACCAATA 59.710 41.667 3.94 0.00 35.20 1.90
2815 4577 3.075283 TGGACAATACACTTGGGACCAAT 59.925 43.478 3.94 0.00 35.20 3.16
2819 4962 3.074412 CAGTGGACAATACACTTGGGAC 58.926 50.000 0.00 0.00 46.38 4.46
2852 4995 0.883833 CTTCCAGTGGACAATGCACC 59.116 55.000 12.69 0.00 39.72 5.01
2856 4999 4.389374 ACTGTAACTTCCAGTGGACAATG 58.611 43.478 12.69 5.27 41.47 2.82
2872 5015 8.051535 ACTGAATGCTACCTAGTAGTACTGTAA 58.948 37.037 13.29 0.00 38.30 2.41
2876 5019 6.183360 GCAACTGAATGCTACCTAGTAGTACT 60.183 42.308 8.14 8.14 43.06 2.73
2877 5020 5.978322 GCAACTGAATGCTACCTAGTAGTAC 59.022 44.000 3.87 0.00 43.06 2.73
2878 5021 5.068723 GGCAACTGAATGCTACCTAGTAGTA 59.931 44.000 3.87 0.00 45.68 1.82
2879 5022 4.141914 GGCAACTGAATGCTACCTAGTAGT 60.142 45.833 3.87 0.00 45.68 2.73
2881 5024 3.772572 TGGCAACTGAATGCTACCTAGTA 59.227 43.478 9.33 0.00 45.68 1.82
2882 5025 2.571653 TGGCAACTGAATGCTACCTAGT 59.428 45.455 9.33 0.00 45.68 2.57
2883 5026 3.266510 TGGCAACTGAATGCTACCTAG 57.733 47.619 9.33 0.00 45.68 3.02
2900 5078 2.469826 GTTACAAAGCAACCAGTTGGC 58.530 47.619 12.20 5.03 40.74 4.52
2901 5079 2.356382 TCGTTACAAAGCAACCAGTTGG 59.644 45.455 12.20 0.00 40.74 3.77
2916 5094 2.224113 TGACCAGACCAGGTTTCGTTAC 60.224 50.000 0.00 0.00 43.38 2.50
3033 5211 4.022416 TGCTGAACCGATTGCATTTTAACT 60.022 37.500 0.00 0.00 0.00 2.24
3034 5212 4.089923 GTGCTGAACCGATTGCATTTTAAC 59.910 41.667 0.00 0.00 37.76 2.01
3035 5213 4.022416 AGTGCTGAACCGATTGCATTTTAA 60.022 37.500 0.00 0.00 37.76 1.52
3036 5214 3.505680 AGTGCTGAACCGATTGCATTTTA 59.494 39.130 0.00 0.00 37.76 1.52
3037 5215 2.297033 AGTGCTGAACCGATTGCATTTT 59.703 40.909 0.00 0.00 37.76 1.82
3038 5216 1.888512 AGTGCTGAACCGATTGCATTT 59.111 42.857 0.00 0.00 37.76 2.32
3039 5217 1.470098 GAGTGCTGAACCGATTGCATT 59.530 47.619 0.00 0.00 37.76 3.56
3040 5218 1.089920 GAGTGCTGAACCGATTGCAT 58.910 50.000 0.00 0.00 37.76 3.96
3041 5219 0.250252 TGAGTGCTGAACCGATTGCA 60.250 50.000 0.00 0.00 0.00 4.08
3128 5306 2.223572 GCCTGAACTATTGCCAATTCCG 60.224 50.000 0.00 0.00 0.00 4.30
3184 5362 9.767228 TGGAATAAGATTTCCGTATTATTCGAA 57.233 29.630 0.00 0.00 46.85 3.71
3185 5363 9.767228 TTGGAATAAGATTTCCGTATTATTCGA 57.233 29.630 9.28 4.55 46.85 3.71
3190 5368 9.893634 TGACTTTGGAATAAGATTTCCGTATTA 57.106 29.630 0.00 0.00 46.85 0.98
3191 5369 8.674607 GTGACTTTGGAATAAGATTTCCGTATT 58.325 33.333 0.00 0.00 46.85 1.89
3192 5370 7.827236 TGTGACTTTGGAATAAGATTTCCGTAT 59.173 33.333 0.00 0.00 46.85 3.06
3193 5371 7.162761 TGTGACTTTGGAATAAGATTTCCGTA 58.837 34.615 0.00 0.00 46.85 4.02
3194 5372 6.001460 TGTGACTTTGGAATAAGATTTCCGT 58.999 36.000 0.00 0.00 46.85 4.69
3195 5373 6.494893 TGTGACTTTGGAATAAGATTTCCG 57.505 37.500 0.00 0.00 46.85 4.30
3196 5374 7.093771 ACCATGTGACTTTGGAATAAGATTTCC 60.094 37.037 11.24 0.00 44.60 3.13
3197 5375 7.830739 ACCATGTGACTTTGGAATAAGATTTC 58.169 34.615 11.24 0.00 36.79 2.17
3198 5376 7.781324 ACCATGTGACTTTGGAATAAGATTT 57.219 32.000 11.24 0.00 36.79 2.17
3199 5377 7.781324 AACCATGTGACTTTGGAATAAGATT 57.219 32.000 11.24 0.00 36.79 2.40
3200 5378 7.888021 TGTAACCATGTGACTTTGGAATAAGAT 59.112 33.333 11.24 0.00 36.79 2.40
3201 5379 7.227873 TGTAACCATGTGACTTTGGAATAAGA 58.772 34.615 11.24 0.00 36.79 2.10
3202 5380 7.174946 ACTGTAACCATGTGACTTTGGAATAAG 59.825 37.037 11.24 6.62 36.79 1.73
3203 5381 7.001674 ACTGTAACCATGTGACTTTGGAATAA 58.998 34.615 11.24 0.00 36.79 1.40
3204 5382 6.539173 ACTGTAACCATGTGACTTTGGAATA 58.461 36.000 11.24 2.99 36.79 1.75
3205 5383 5.385198 ACTGTAACCATGTGACTTTGGAAT 58.615 37.500 11.24 3.76 36.79 3.01
3206 5384 4.787551 ACTGTAACCATGTGACTTTGGAA 58.212 39.130 11.24 0.00 36.79 3.53
3207 5385 4.385825 GACTGTAACCATGTGACTTTGGA 58.614 43.478 11.24 0.00 36.79 3.53
3208 5386 3.186409 CGACTGTAACCATGTGACTTTGG 59.814 47.826 4.01 4.01 39.02 3.28
3209 5387 4.055360 TCGACTGTAACCATGTGACTTTG 58.945 43.478 0.00 0.00 0.00 2.77
3210 5388 4.038763 TCTCGACTGTAACCATGTGACTTT 59.961 41.667 0.00 0.00 0.00 2.66
3211 5389 3.572682 TCTCGACTGTAACCATGTGACTT 59.427 43.478 0.00 0.00 0.00 3.01
3212 5390 3.154710 TCTCGACTGTAACCATGTGACT 58.845 45.455 0.00 0.00 0.00 3.41
3213 5391 3.502920 CTCTCGACTGTAACCATGTGAC 58.497 50.000 0.00 0.00 0.00 3.67
3214 5392 2.492088 CCTCTCGACTGTAACCATGTGA 59.508 50.000 0.00 0.00 0.00 3.58
3215 5393 2.881074 CCTCTCGACTGTAACCATGTG 58.119 52.381 0.00 0.00 0.00 3.21
3216 5394 1.204941 GCCTCTCGACTGTAACCATGT 59.795 52.381 0.00 0.00 0.00 3.21
3217 5395 1.204704 TGCCTCTCGACTGTAACCATG 59.795 52.381 0.00 0.00 0.00 3.66
3218 5396 1.557099 TGCCTCTCGACTGTAACCAT 58.443 50.000 0.00 0.00 0.00 3.55
3219 5397 1.334160 TTGCCTCTCGACTGTAACCA 58.666 50.000 0.00 0.00 0.00 3.67
3220 5398 2.674796 ATTGCCTCTCGACTGTAACC 57.325 50.000 0.00 0.00 0.00 2.85
3221 5399 4.745649 ACTTATTGCCTCTCGACTGTAAC 58.254 43.478 0.00 0.00 0.00 2.50
3222 5400 4.142227 GGACTTATTGCCTCTCGACTGTAA 60.142 45.833 0.00 0.00 0.00 2.41
3223 5401 3.380637 GGACTTATTGCCTCTCGACTGTA 59.619 47.826 0.00 0.00 0.00 2.74
3224 5402 2.166664 GGACTTATTGCCTCTCGACTGT 59.833 50.000 0.00 0.00 0.00 3.55
3225 5403 2.428890 AGGACTTATTGCCTCTCGACTG 59.571 50.000 0.00 0.00 0.00 3.51
3226 5404 2.691011 GAGGACTTATTGCCTCTCGACT 59.309 50.000 0.00 0.00 45.72 4.18
3227 5405 3.086818 GAGGACTTATTGCCTCTCGAC 57.913 52.381 0.00 0.00 45.72 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.