Multiple sequence alignment - TraesCS2A01G176400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G176400 chr2A 100.000 3504 0 0 1 3504 136050206 136053709 0.000000e+00 6471
1 TraesCS2A01G176400 chr2D 94.806 1752 70 15 845 2590 129159777 129161513 0.000000e+00 2712
2 TraesCS2A01G176400 chr2D 93.454 718 22 5 2809 3504 129186571 129187285 0.000000e+00 1042
3 TraesCS2A01G176400 chr2D 92.806 278 19 1 654 931 129159509 129159785 5.450000e-108 401
4 TraesCS2A01G176400 chr2D 90.323 155 10 2 2588 2739 129161542 129161694 7.670000e-47 198
5 TraesCS2A01G176400 chr2D 100.000 74 0 0 2726 2799 129161720 129161793 1.700000e-28 137
6 TraesCS2A01G176400 chr2D 90.909 88 6 2 536 622 129149301 129149387 2.210000e-22 117
7 TraesCS2A01G176400 chr2B 91.623 1910 106 27 697 2588 182705630 182707503 0.000000e+00 2591
8 TraesCS2A01G176400 chr2B 91.034 803 25 6 2731 3504 182707945 182708729 0.000000e+00 1040
9 TraesCS2A01G176400 chr2B 96.658 389 12 1 102 490 616457909 616457522 0.000000e+00 645
10 TraesCS2A01G176400 chr2B 92.857 112 5 1 2588 2696 182707534 182707645 3.620000e-35 159
11 TraesCS2A01G176400 chr4B 97.150 386 10 1 105 490 3910887 3910503 0.000000e+00 651
12 TraesCS2A01G176400 chr3B 97.382 382 10 0 109 490 697856695 697857076 0.000000e+00 651
13 TraesCS2A01G176400 chr3B 96.335 382 13 1 109 490 578617944 578618324 8.260000e-176 627
14 TraesCS2A01G176400 chr7A 96.899 387 11 1 104 490 217582908 217583293 0.000000e+00 647
15 TraesCS2A01G176400 chr1B 97.120 382 11 0 109 490 407306715 407307096 0.000000e+00 645
16 TraesCS2A01G176400 chr1B 95.619 388 15 2 103 490 17617452 17617837 3.840000e-174 621
17 TraesCS2A01G176400 chr3A 96.597 382 13 0 109 490 742042473 742042854 4.930000e-178 634
18 TraesCS2A01G176400 chr5B 95.026 382 18 1 109 490 619030 619410 1.800000e-167 599


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G176400 chr2A 136050206 136053709 3503 False 6471.000000 6471 100.00000 1 3504 1 chr2A.!!$F1 3503
1 TraesCS2A01G176400 chr2D 129186571 129187285 714 False 1042.000000 1042 93.45400 2809 3504 1 chr2D.!!$F2 695
2 TraesCS2A01G176400 chr2D 129159509 129161793 2284 False 862.000000 2712 94.48375 654 2799 4 chr2D.!!$F3 2145
3 TraesCS2A01G176400 chr2B 182705630 182708729 3099 False 1263.333333 2591 91.83800 697 3504 3 chr2B.!!$F1 2807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.025898 CAACATCGACGATGCTGCTG 59.974 55.0 32.23 21.32 43.15 4.41 F
417 418 0.031616 GAGAGGAGTGGAGGATGGGT 60.032 60.0 0.00 0.00 0.00 4.51 F
451 452 0.034896 TCAGGAAGGAAAGGCGACAC 59.965 55.0 0.00 0.00 0.00 3.67 F
606 607 0.037326 GAGACGTGATGCCAACTGGA 60.037 55.0 0.00 0.00 37.39 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1619 0.182061 ATCGCTGGATCTTGGCACAT 59.818 50.000 0.00 0.0 39.30 3.21 R
1539 1620 0.462581 GATCGCTGGATCTTGGCACA 60.463 55.000 0.00 0.0 44.66 4.57 R
1576 1657 1.352017 TCAGCTGCCAAATCAGGAAGA 59.648 47.619 9.47 0.0 36.29 2.87 R
2531 2631 0.108138 GCCTGTGGCTATCTGAACGT 60.108 55.000 0.73 0.0 46.69 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.139654 TGGATGAGCTATGGTGTCTGC 59.860 52.381 0.00 0.00 0.00 4.26
21 22 1.415659 GGATGAGCTATGGTGTCTGCT 59.584 52.381 0.00 0.00 38.59 4.24
22 23 2.481854 GATGAGCTATGGTGTCTGCTG 58.518 52.381 0.00 0.00 35.76 4.41
23 24 0.107993 TGAGCTATGGTGTCTGCTGC 60.108 55.000 0.00 0.00 35.76 5.25
24 25 0.177604 GAGCTATGGTGTCTGCTGCT 59.822 55.000 0.00 0.00 35.76 4.24
25 26 0.617413 AGCTATGGTGTCTGCTGCTT 59.383 50.000 0.00 0.00 34.19 3.91
26 27 1.012841 GCTATGGTGTCTGCTGCTTC 58.987 55.000 0.00 0.00 0.00 3.86
27 28 1.406614 GCTATGGTGTCTGCTGCTTCT 60.407 52.381 0.00 0.00 0.00 2.85
28 29 2.938756 GCTATGGTGTCTGCTGCTTCTT 60.939 50.000 0.00 0.00 0.00 2.52
29 30 1.818642 ATGGTGTCTGCTGCTTCTTC 58.181 50.000 0.00 0.00 0.00 2.87
30 31 0.761187 TGGTGTCTGCTGCTTCTTCT 59.239 50.000 0.00 0.00 0.00 2.85
31 32 1.141657 TGGTGTCTGCTGCTTCTTCTT 59.858 47.619 0.00 0.00 0.00 2.52
32 33 2.225467 GGTGTCTGCTGCTTCTTCTTT 58.775 47.619 0.00 0.00 0.00 2.52
33 34 2.620585 GGTGTCTGCTGCTTCTTCTTTT 59.379 45.455 0.00 0.00 0.00 2.27
34 35 3.067320 GGTGTCTGCTGCTTCTTCTTTTT 59.933 43.478 0.00 0.00 0.00 1.94
52 53 1.643310 TTTTTGAGGGGAAGCCATGG 58.357 50.000 7.63 7.63 0.00 3.66
53 54 0.486879 TTTTGAGGGGAAGCCATGGT 59.513 50.000 14.67 0.00 0.00 3.55
54 55 0.251742 TTTGAGGGGAAGCCATGGTG 60.252 55.000 14.67 0.00 0.00 4.17
55 56 1.434513 TTGAGGGGAAGCCATGGTGT 61.435 55.000 14.67 0.52 0.00 4.16
56 57 1.077429 GAGGGGAAGCCATGGTGTC 60.077 63.158 14.67 10.79 0.00 3.67
57 58 1.542375 AGGGGAAGCCATGGTGTCT 60.542 57.895 14.67 0.00 0.00 3.41
58 59 1.379044 GGGGAAGCCATGGTGTCTG 60.379 63.158 14.67 0.00 0.00 3.51
59 60 1.379044 GGGAAGCCATGGTGTCTGG 60.379 63.158 14.67 0.00 36.81 3.86
60 61 1.380302 GGAAGCCATGGTGTCTGGT 59.620 57.895 14.67 0.00 36.10 4.00
61 62 0.618458 GGAAGCCATGGTGTCTGGTA 59.382 55.000 14.67 0.00 36.10 3.25
62 63 1.004277 GGAAGCCATGGTGTCTGGTAA 59.996 52.381 14.67 0.00 36.10 2.85
63 64 2.554344 GGAAGCCATGGTGTCTGGTAAA 60.554 50.000 14.67 0.00 36.10 2.01
64 65 3.356290 GAAGCCATGGTGTCTGGTAAAT 58.644 45.455 14.67 0.00 36.10 1.40
65 66 4.523083 GAAGCCATGGTGTCTGGTAAATA 58.477 43.478 14.67 0.00 36.10 1.40
66 67 4.156455 AGCCATGGTGTCTGGTAAATAG 57.844 45.455 14.67 0.00 36.10 1.73
67 68 3.117888 AGCCATGGTGTCTGGTAAATAGG 60.118 47.826 14.67 0.00 36.10 2.57
68 69 3.214328 CCATGGTGTCTGGTAAATAGGC 58.786 50.000 2.57 0.00 0.00 3.93
69 70 3.214328 CATGGTGTCTGGTAAATAGGCC 58.786 50.000 0.00 0.00 0.00 5.19
70 71 1.208535 TGGTGTCTGGTAAATAGGCCG 59.791 52.381 0.00 0.00 0.00 6.13
71 72 1.296727 GTGTCTGGTAAATAGGCCGC 58.703 55.000 0.00 0.00 0.00 6.53
72 73 1.134491 GTGTCTGGTAAATAGGCCGCT 60.134 52.381 0.00 0.00 0.00 5.52
73 74 1.134521 TGTCTGGTAAATAGGCCGCTG 60.135 52.381 0.00 0.00 0.00 5.18
74 75 0.468226 TCTGGTAAATAGGCCGCTGG 59.532 55.000 0.00 0.00 0.00 4.85
75 76 0.468226 CTGGTAAATAGGCCGCTGGA 59.532 55.000 0.00 0.00 0.00 3.86
76 77 0.913205 TGGTAAATAGGCCGCTGGAA 59.087 50.000 0.00 0.00 0.00 3.53
77 78 1.282447 TGGTAAATAGGCCGCTGGAAA 59.718 47.619 0.00 0.00 0.00 3.13
78 79 1.674441 GGTAAATAGGCCGCTGGAAAC 59.326 52.381 0.00 0.00 0.00 2.78
79 80 1.674441 GTAAATAGGCCGCTGGAAACC 59.326 52.381 0.00 0.00 0.00 3.27
80 81 0.331616 AAATAGGCCGCTGGAAACCT 59.668 50.000 0.00 0.00 36.27 3.50
81 82 0.107165 AATAGGCCGCTGGAAACCTC 60.107 55.000 0.00 0.00 33.60 3.85
82 83 1.271840 ATAGGCCGCTGGAAACCTCA 61.272 55.000 0.00 0.00 33.60 3.86
83 84 1.271840 TAGGCCGCTGGAAACCTCAT 61.272 55.000 0.00 0.00 33.60 2.90
84 85 2.115291 GGCCGCTGGAAACCTCATC 61.115 63.158 0.00 0.00 0.00 2.92
85 86 2.464459 GCCGCTGGAAACCTCATCG 61.464 63.158 0.00 0.00 0.00 3.84
86 87 2.464459 CCGCTGGAAACCTCATCGC 61.464 63.158 0.00 0.00 0.00 4.58
87 88 1.448540 CGCTGGAAACCTCATCGCT 60.449 57.895 0.00 0.00 0.00 4.93
88 89 1.699656 CGCTGGAAACCTCATCGCTG 61.700 60.000 0.00 0.00 0.00 5.18
89 90 0.674895 GCTGGAAACCTCATCGCTGT 60.675 55.000 0.00 0.00 0.00 4.40
90 91 1.363744 CTGGAAACCTCATCGCTGTC 58.636 55.000 0.00 0.00 0.00 3.51
91 92 0.976641 TGGAAACCTCATCGCTGTCT 59.023 50.000 0.00 0.00 0.00 3.41
92 93 1.338105 TGGAAACCTCATCGCTGTCTG 60.338 52.381 0.00 0.00 0.00 3.51
93 94 0.723981 GAAACCTCATCGCTGTCTGC 59.276 55.000 0.00 0.00 38.57 4.26
94 95 0.674895 AAACCTCATCGCTGTCTGCC 60.675 55.000 0.00 0.00 38.78 4.85
95 96 1.830587 AACCTCATCGCTGTCTGCCA 61.831 55.000 0.00 0.00 38.78 4.92
96 97 1.078918 CCTCATCGCTGTCTGCCAA 60.079 57.895 0.00 0.00 38.78 4.52
97 98 0.674581 CCTCATCGCTGTCTGCCAAA 60.675 55.000 0.00 0.00 38.78 3.28
98 99 0.725686 CTCATCGCTGTCTGCCAAAG 59.274 55.000 0.00 0.00 38.78 2.77
99 100 0.035317 TCATCGCTGTCTGCCAAAGT 59.965 50.000 0.00 0.00 38.78 2.66
100 101 1.275010 TCATCGCTGTCTGCCAAAGTA 59.725 47.619 0.00 0.00 38.78 2.24
101 102 2.076100 CATCGCTGTCTGCCAAAGTAA 58.924 47.619 0.00 0.00 38.78 2.24
102 103 2.248280 TCGCTGTCTGCCAAAGTAAA 57.752 45.000 0.00 0.00 38.78 2.01
103 104 2.778299 TCGCTGTCTGCCAAAGTAAAT 58.222 42.857 0.00 0.00 38.78 1.40
104 105 3.146066 TCGCTGTCTGCCAAAGTAAATT 58.854 40.909 0.00 0.00 38.78 1.82
105 106 3.568007 TCGCTGTCTGCCAAAGTAAATTT 59.432 39.130 0.00 0.00 38.78 1.82
106 107 4.037446 TCGCTGTCTGCCAAAGTAAATTTT 59.963 37.500 0.00 0.00 38.78 1.82
107 108 4.382754 CGCTGTCTGCCAAAGTAAATTTTC 59.617 41.667 0.00 0.00 38.78 2.29
108 109 5.288804 GCTGTCTGCCAAAGTAAATTTTCA 58.711 37.500 0.00 0.00 35.15 2.69
109 110 5.175673 GCTGTCTGCCAAAGTAAATTTTCAC 59.824 40.000 0.00 0.00 35.15 3.18
110 111 5.596845 TGTCTGCCAAAGTAAATTTTCACC 58.403 37.500 0.00 0.00 0.00 4.02
111 112 4.679654 GTCTGCCAAAGTAAATTTTCACCG 59.320 41.667 0.00 0.00 0.00 4.94
112 113 4.580995 TCTGCCAAAGTAAATTTTCACCGA 59.419 37.500 0.00 0.00 0.00 4.69
113 114 5.067936 TCTGCCAAAGTAAATTTTCACCGAA 59.932 36.000 0.00 0.00 0.00 4.30
114 115 5.661458 TGCCAAAGTAAATTTTCACCGAAA 58.339 33.333 0.00 0.00 0.00 3.46
115 116 6.106673 TGCCAAAGTAAATTTTCACCGAAAA 58.893 32.000 0.00 4.50 44.04 2.29
116 117 6.594159 TGCCAAAGTAAATTTTCACCGAAAAA 59.406 30.769 6.03 0.00 43.32 1.94
117 118 7.123190 GCCAAAGTAAATTTTCACCGAAAAAG 58.877 34.615 6.03 0.00 43.32 2.27
118 119 7.626446 CCAAAGTAAATTTTCACCGAAAAAGG 58.374 34.615 6.03 0.00 43.32 3.11
119 120 7.492994 CCAAAGTAAATTTTCACCGAAAAAGGA 59.507 33.333 6.03 0.00 43.32 3.36
120 121 9.040939 CAAAGTAAATTTTCACCGAAAAAGGAT 57.959 29.630 6.03 0.00 43.32 3.24
121 122 9.607988 AAAGTAAATTTTCACCGAAAAAGGATT 57.392 25.926 6.03 3.26 43.32 3.01
122 123 9.607988 AAGTAAATTTTCACCGAAAAAGGATTT 57.392 25.926 6.03 5.27 43.32 2.17
123 124 9.256477 AGTAAATTTTCACCGAAAAAGGATTTC 57.744 29.630 6.03 0.00 43.32 2.17
124 125 7.490962 AAATTTTCACCGAAAAAGGATTTCC 57.509 32.000 6.03 0.00 43.32 3.13
125 126 4.594123 TTTCACCGAAAAAGGATTTCCC 57.406 40.909 0.00 0.00 37.28 3.97
126 127 2.521126 TCACCGAAAAAGGATTTCCCC 58.479 47.619 0.00 0.00 37.28 4.81
127 128 1.548719 CACCGAAAAAGGATTTCCCCC 59.451 52.381 0.00 0.00 37.28 5.40
156 157 9.921637 CTTTATAAATAAAGCAACTTCCACCAA 57.078 29.630 9.01 0.00 41.69 3.67
159 160 6.418057 AAATAAAGCAACTTCCACCAATCA 57.582 33.333 0.00 0.00 0.00 2.57
160 161 3.733443 AAAGCAACTTCCACCAATCAC 57.267 42.857 0.00 0.00 0.00 3.06
161 162 2.363306 AGCAACTTCCACCAATCACA 57.637 45.000 0.00 0.00 0.00 3.58
162 163 1.956477 AGCAACTTCCACCAATCACAC 59.044 47.619 0.00 0.00 0.00 3.82
163 164 1.334960 GCAACTTCCACCAATCACACG 60.335 52.381 0.00 0.00 0.00 4.49
164 165 1.266718 CAACTTCCACCAATCACACGG 59.733 52.381 0.00 0.00 0.00 4.94
165 166 0.472471 ACTTCCACCAATCACACGGT 59.528 50.000 0.00 0.00 35.27 4.83
166 167 1.695242 ACTTCCACCAATCACACGGTA 59.305 47.619 0.00 0.00 32.98 4.02
167 168 2.105134 ACTTCCACCAATCACACGGTAA 59.895 45.455 0.00 0.00 32.98 2.85
168 169 2.172851 TCCACCAATCACACGGTAAC 57.827 50.000 0.00 0.00 32.98 2.50
169 170 1.695242 TCCACCAATCACACGGTAACT 59.305 47.619 0.00 0.00 32.98 2.24
170 171 1.804151 CCACCAATCACACGGTAACTG 59.196 52.381 0.00 0.00 32.98 3.16
171 172 1.196808 CACCAATCACACGGTAACTGC 59.803 52.381 0.00 0.00 32.98 4.40
172 173 1.071699 ACCAATCACACGGTAACTGCT 59.928 47.619 0.00 0.00 32.31 4.24
173 174 1.464608 CCAATCACACGGTAACTGCTG 59.535 52.381 0.00 0.00 0.00 4.41
174 175 1.464608 CAATCACACGGTAACTGCTGG 59.535 52.381 0.00 0.00 0.00 4.85
175 176 0.036388 ATCACACGGTAACTGCTGGG 60.036 55.000 0.00 0.00 0.00 4.45
176 177 1.671054 CACACGGTAACTGCTGGGG 60.671 63.158 0.00 0.00 0.00 4.96
177 178 2.746277 CACGGTAACTGCTGGGGC 60.746 66.667 0.00 0.00 39.26 5.80
179 180 2.746277 CGGTAACTGCTGGGGCAC 60.746 66.667 0.00 0.00 44.28 5.01
180 181 2.434331 GGTAACTGCTGGGGCACA 59.566 61.111 0.00 0.00 44.28 4.57
181 182 1.971695 GGTAACTGCTGGGGCACAC 60.972 63.158 0.00 0.00 44.28 3.82
182 183 1.228124 GTAACTGCTGGGGCACACA 60.228 57.895 0.00 0.00 44.28 3.72
183 184 1.073025 TAACTGCTGGGGCACACAG 59.927 57.895 14.94 14.94 44.28 3.66
193 194 4.546637 GCACACAGCACATCAAGC 57.453 55.556 0.00 0.00 44.79 4.01
194 195 1.080974 GCACACAGCACATCAAGCC 60.081 57.895 0.00 0.00 44.79 4.35
195 196 1.582968 CACACAGCACATCAAGCCC 59.417 57.895 0.00 0.00 0.00 5.19
196 197 1.151221 ACACAGCACATCAAGCCCA 59.849 52.632 0.00 0.00 0.00 5.36
197 198 0.467844 ACACAGCACATCAAGCCCAA 60.468 50.000 0.00 0.00 0.00 4.12
198 199 0.675083 CACAGCACATCAAGCCCAAA 59.325 50.000 0.00 0.00 0.00 3.28
199 200 1.068895 CACAGCACATCAAGCCCAAAA 59.931 47.619 0.00 0.00 0.00 2.44
200 201 1.342174 ACAGCACATCAAGCCCAAAAG 59.658 47.619 0.00 0.00 0.00 2.27
201 202 1.614903 CAGCACATCAAGCCCAAAAGA 59.385 47.619 0.00 0.00 0.00 2.52
202 203 1.891150 AGCACATCAAGCCCAAAAGAG 59.109 47.619 0.00 0.00 0.00 2.85
203 204 1.888512 GCACATCAAGCCCAAAAGAGA 59.111 47.619 0.00 0.00 0.00 3.10
204 205 2.297033 GCACATCAAGCCCAAAAGAGAA 59.703 45.455 0.00 0.00 0.00 2.87
205 206 3.243839 GCACATCAAGCCCAAAAGAGAAA 60.244 43.478 0.00 0.00 0.00 2.52
206 207 4.740334 GCACATCAAGCCCAAAAGAGAAAA 60.740 41.667 0.00 0.00 0.00 2.29
207 208 5.358922 CACATCAAGCCCAAAAGAGAAAAA 58.641 37.500 0.00 0.00 0.00 1.94
228 229 7.446001 AAAAAGAAGAACAAAATGCCAACAA 57.554 28.000 0.00 0.00 0.00 2.83
229 230 6.421377 AAAGAAGAACAAAATGCCAACAAC 57.579 33.333 0.00 0.00 0.00 3.32
230 231 4.111916 AGAAGAACAAAATGCCAACAACG 58.888 39.130 0.00 0.00 0.00 4.10
231 232 2.820330 AGAACAAAATGCCAACAACGG 58.180 42.857 0.00 0.00 0.00 4.44
239 240 2.637025 CCAACAACGGCAACTCGG 59.363 61.111 0.00 0.00 0.00 4.63
240 241 2.051345 CAACAACGGCAACTCGGC 60.051 61.111 0.00 0.00 0.00 5.54
241 242 2.515057 AACAACGGCAACTCGGCA 60.515 55.556 0.00 0.00 41.26 5.69
242 243 2.115911 AACAACGGCAACTCGGCAA 61.116 52.632 0.00 0.00 41.26 4.52
243 244 1.658686 AACAACGGCAACTCGGCAAA 61.659 50.000 0.00 0.00 41.26 3.68
244 245 1.370414 CAACGGCAACTCGGCAAAG 60.370 57.895 0.00 0.00 41.26 2.77
245 246 3.194272 AACGGCAACTCGGCAAAGC 62.194 57.895 0.00 0.00 41.26 3.51
246 247 3.357079 CGGCAACTCGGCAAAGCT 61.357 61.111 0.00 0.00 41.26 3.74
247 248 2.032634 CGGCAACTCGGCAAAGCTA 61.033 57.895 0.00 0.00 41.26 3.32
248 249 1.573829 CGGCAACTCGGCAAAGCTAA 61.574 55.000 0.00 0.00 41.26 3.09
249 250 0.169009 GGCAACTCGGCAAAGCTAAG 59.831 55.000 0.00 0.00 40.76 2.18
250 251 1.156736 GCAACTCGGCAAAGCTAAGA 58.843 50.000 0.00 0.00 0.00 2.10
251 252 1.740025 GCAACTCGGCAAAGCTAAGAT 59.260 47.619 0.00 0.00 0.00 2.40
252 253 2.476854 GCAACTCGGCAAAGCTAAGATG 60.477 50.000 0.00 0.00 0.00 2.90
253 254 3.002791 CAACTCGGCAAAGCTAAGATGA 58.997 45.455 0.00 0.00 0.00 2.92
254 255 3.550437 ACTCGGCAAAGCTAAGATGAT 57.450 42.857 0.00 0.00 0.00 2.45
255 256 3.462021 ACTCGGCAAAGCTAAGATGATC 58.538 45.455 0.00 0.00 0.00 2.92
256 257 3.133721 ACTCGGCAAAGCTAAGATGATCT 59.866 43.478 0.00 0.00 0.00 2.75
257 258 3.461061 TCGGCAAAGCTAAGATGATCTG 58.539 45.455 0.00 0.00 0.00 2.90
258 259 2.032204 CGGCAAAGCTAAGATGATCTGC 60.032 50.000 0.00 0.00 0.00 4.26
259 260 2.292845 GGCAAAGCTAAGATGATCTGCC 59.707 50.000 0.00 0.00 41.14 4.85
260 261 3.212685 GCAAAGCTAAGATGATCTGCCT 58.787 45.455 0.00 0.00 0.00 4.75
261 262 3.250521 GCAAAGCTAAGATGATCTGCCTC 59.749 47.826 0.00 0.00 0.00 4.70
262 263 3.767902 AAGCTAAGATGATCTGCCTCC 57.232 47.619 0.00 0.00 0.00 4.30
263 264 1.617850 AGCTAAGATGATCTGCCTCCG 59.382 52.381 0.00 0.00 0.00 4.63
264 265 1.938926 GCTAAGATGATCTGCCTCCGC 60.939 57.143 0.00 0.00 0.00 5.54
265 266 1.617850 CTAAGATGATCTGCCTCCGCT 59.382 52.381 0.00 0.00 35.36 5.52
266 267 0.106335 AAGATGATCTGCCTCCGCTG 59.894 55.000 0.00 0.00 35.36 5.18
267 268 1.960250 GATGATCTGCCTCCGCTGC 60.960 63.158 0.00 0.00 35.36 5.25
268 269 3.804153 ATGATCTGCCTCCGCTGCG 62.804 63.158 16.34 16.34 35.36 5.18
284 285 4.587189 CGCCCTCCGGATTCGTCC 62.587 72.222 3.57 0.00 33.95 4.79
285 286 4.237207 GCCCTCCGGATTCGTCCC 62.237 72.222 3.57 0.00 33.95 4.46
286 287 2.762459 CCCTCCGGATTCGTCCCA 60.762 66.667 3.57 0.00 33.95 4.37
287 288 2.499685 CCTCCGGATTCGTCCCAC 59.500 66.667 3.57 0.00 33.95 4.61
288 289 2.499685 CTCCGGATTCGTCCCACC 59.500 66.667 3.57 0.00 33.95 4.61
289 290 2.284039 TCCGGATTCGTCCCACCA 60.284 61.111 0.00 0.00 33.95 4.17
290 291 2.125269 CCGGATTCGTCCCACCAC 60.125 66.667 0.00 0.00 33.95 4.16
291 292 2.660206 CGGATTCGTCCCACCACA 59.340 61.111 0.00 0.00 0.00 4.17
292 293 1.740296 CGGATTCGTCCCACCACAC 60.740 63.158 0.00 0.00 0.00 3.82
293 294 1.373435 GGATTCGTCCCACCACACA 59.627 57.895 0.00 0.00 0.00 3.72
294 295 0.953960 GGATTCGTCCCACCACACAC 60.954 60.000 0.00 0.00 0.00 3.82
295 296 0.953960 GATTCGTCCCACCACACACC 60.954 60.000 0.00 0.00 0.00 4.16
296 297 1.701031 ATTCGTCCCACCACACACCA 61.701 55.000 0.00 0.00 0.00 4.17
297 298 1.911702 TTCGTCCCACCACACACCAA 61.912 55.000 0.00 0.00 0.00 3.67
298 299 1.891919 CGTCCCACCACACACCAAG 60.892 63.158 0.00 0.00 0.00 3.61
299 300 1.528309 GTCCCACCACACACCAAGG 60.528 63.158 0.00 0.00 0.00 3.61
300 301 2.912025 CCCACCACACACCAAGGC 60.912 66.667 0.00 0.00 0.00 4.35
301 302 2.195683 CCACCACACACCAAGGCT 59.804 61.111 0.00 0.00 0.00 4.58
302 303 1.898574 CCACCACACACCAAGGCTC 60.899 63.158 0.00 0.00 0.00 4.70
303 304 1.898574 CACCACACACCAAGGCTCC 60.899 63.158 0.00 0.00 0.00 4.70
304 305 2.669569 CCACACACCAAGGCTCCG 60.670 66.667 0.00 0.00 0.00 4.63
305 306 2.425592 CACACACCAAGGCTCCGA 59.574 61.111 0.00 0.00 0.00 4.55
306 307 1.227823 CACACACCAAGGCTCCGAA 60.228 57.895 0.00 0.00 0.00 4.30
307 308 0.606401 CACACACCAAGGCTCCGAAT 60.606 55.000 0.00 0.00 0.00 3.34
308 309 0.321653 ACACACCAAGGCTCCGAATC 60.322 55.000 0.00 0.00 0.00 2.52
309 310 1.079127 ACACCAAGGCTCCGAATCG 60.079 57.895 0.00 0.00 0.00 3.34
310 311 2.125106 ACCAAGGCTCCGAATCGC 60.125 61.111 0.00 0.00 0.00 4.58
311 312 2.897350 CCAAGGCTCCGAATCGCC 60.897 66.667 0.00 0.00 46.65 5.54
316 317 4.918129 GCTCCGAATCGCCGCGTA 62.918 66.667 13.39 0.00 0.00 4.42
317 318 2.278336 CTCCGAATCGCCGCGTAA 60.278 61.111 13.39 0.00 0.00 3.18
318 319 2.574222 CTCCGAATCGCCGCGTAAC 61.574 63.158 13.39 4.42 0.00 2.50
319 320 3.623330 CCGAATCGCCGCGTAACC 61.623 66.667 13.39 0.28 0.00 2.85
320 321 2.881827 CGAATCGCCGCGTAACCA 60.882 61.111 13.39 0.00 0.00 3.67
321 322 2.446253 CGAATCGCCGCGTAACCAA 61.446 57.895 13.39 0.00 0.00 3.67
322 323 1.347221 GAATCGCCGCGTAACCAAG 59.653 57.895 13.39 0.00 0.00 3.61
323 324 2.627201 GAATCGCCGCGTAACCAAGC 62.627 60.000 13.39 0.00 0.00 4.01
324 325 3.943479 ATCGCCGCGTAACCAAGCA 62.943 57.895 13.39 0.00 0.00 3.91
325 326 4.147322 CGCCGCGTAACCAAGCAG 62.147 66.667 4.92 0.00 0.00 4.24
326 327 4.460873 GCCGCGTAACCAAGCAGC 62.461 66.667 4.92 0.00 0.00 5.25
327 328 3.047280 CCGCGTAACCAAGCAGCA 61.047 61.111 4.92 0.00 0.00 4.41
328 329 2.173382 CGCGTAACCAAGCAGCAC 59.827 61.111 0.00 0.00 0.00 4.40
329 330 2.561373 GCGTAACCAAGCAGCACC 59.439 61.111 0.00 0.00 0.00 5.01
330 331 1.966451 GCGTAACCAAGCAGCACCT 60.966 57.895 0.00 0.00 0.00 4.00
331 332 1.912371 GCGTAACCAAGCAGCACCTC 61.912 60.000 0.00 0.00 0.00 3.85
332 333 1.298859 CGTAACCAAGCAGCACCTCC 61.299 60.000 0.00 0.00 0.00 4.30
333 334 0.250727 GTAACCAAGCAGCACCTCCA 60.251 55.000 0.00 0.00 0.00 3.86
334 335 0.476338 TAACCAAGCAGCACCTCCAA 59.524 50.000 0.00 0.00 0.00 3.53
335 336 0.825010 AACCAAGCAGCACCTCCAAG 60.825 55.000 0.00 0.00 0.00 3.61
336 337 1.073722 CCAAGCAGCACCTCCAAGA 59.926 57.895 0.00 0.00 0.00 3.02
337 338 0.538057 CCAAGCAGCACCTCCAAGAA 60.538 55.000 0.00 0.00 0.00 2.52
338 339 0.879765 CAAGCAGCACCTCCAAGAAG 59.120 55.000 0.00 0.00 0.00 2.85
339 340 0.251077 AAGCAGCACCTCCAAGAAGG 60.251 55.000 0.00 0.00 42.55 3.46
340 341 1.676967 GCAGCACCTCCAAGAAGGG 60.677 63.158 0.00 0.00 41.04 3.95
341 342 1.001641 CAGCACCTCCAAGAAGGGG 60.002 63.158 0.00 0.00 43.25 4.79
342 343 1.464198 AGCACCTCCAAGAAGGGGT 60.464 57.895 0.00 0.00 42.29 4.95
344 345 1.303643 CACCTCCAAGAAGGGGTGC 60.304 63.158 0.00 0.00 45.54 5.01
345 346 1.774217 ACCTCCAAGAAGGGGTGCA 60.774 57.895 0.00 0.00 41.04 4.57
346 347 1.360393 ACCTCCAAGAAGGGGTGCAA 61.360 55.000 0.00 0.00 41.04 4.08
347 348 0.895559 CCTCCAAGAAGGGGTGCAAC 60.896 60.000 0.00 0.00 35.37 4.17
348 349 0.178992 CTCCAAGAAGGGGTGCAACA 60.179 55.000 3.06 0.00 35.08 3.33
349 350 0.482446 TCCAAGAAGGGGTGCAACAT 59.518 50.000 3.06 0.00 35.08 2.71
350 351 0.890683 CCAAGAAGGGGTGCAACATC 59.109 55.000 3.06 0.00 39.98 3.06
351 352 0.523072 CAAGAAGGGGTGCAACATCG 59.477 55.000 3.06 0.00 39.98 3.84
352 353 0.400213 AAGAAGGGGTGCAACATCGA 59.600 50.000 3.06 0.00 39.98 3.59
353 354 0.321653 AGAAGGGGTGCAACATCGAC 60.322 55.000 3.06 0.00 39.98 4.20
354 355 1.635663 GAAGGGGTGCAACATCGACG 61.636 60.000 3.06 0.00 39.98 5.12
355 356 2.047655 GGGGTGCAACATCGACGA 60.048 61.111 3.06 0.00 39.98 4.20
356 357 1.449601 GGGGTGCAACATCGACGAT 60.450 57.895 3.06 4.05 39.98 3.73
357 358 1.705337 GGGGTGCAACATCGACGATG 61.705 60.000 31.05 31.05 44.71 3.84
358 359 1.060937 GGTGCAACATCGACGATGC 59.939 57.895 32.23 23.01 43.15 3.91
359 360 1.361668 GGTGCAACATCGACGATGCT 61.362 55.000 32.23 21.19 43.15 3.79
360 361 0.247419 GTGCAACATCGACGATGCTG 60.247 55.000 32.23 30.22 43.15 4.41
361 362 4.961622 CAACATCGACGATGCTGC 57.038 55.556 32.23 0.00 43.15 5.25
362 363 2.377004 CAACATCGACGATGCTGCT 58.623 52.632 32.23 14.30 43.15 4.24
363 364 0.025898 CAACATCGACGATGCTGCTG 59.974 55.000 32.23 21.32 43.15 4.41
364 365 1.699656 AACATCGACGATGCTGCTGC 61.700 55.000 32.23 8.89 43.15 5.25
365 366 2.587194 ATCGACGATGCTGCTGCC 60.587 61.111 10.09 0.00 38.71 4.85
366 367 4.819761 TCGACGATGCTGCTGCCC 62.820 66.667 13.47 4.19 38.71 5.36
371 372 4.783621 GATGCTGCTGCCCGGACA 62.784 66.667 13.47 0.00 38.71 4.02
372 373 4.119363 ATGCTGCTGCCCGGACAT 62.119 61.111 13.47 0.00 38.71 3.06
375 376 2.821366 CTGCTGCCCGGACATGTC 60.821 66.667 17.91 17.91 0.00 3.06
376 377 4.408821 TGCTGCCCGGACATGTCC 62.409 66.667 31.59 31.59 46.18 4.02
386 387 2.019948 GGACATGTCCTACGGTTTCC 57.980 55.000 33.47 7.36 46.16 3.13
387 388 1.406477 GGACATGTCCTACGGTTTCCC 60.406 57.143 33.47 6.83 46.16 3.97
388 389 0.616891 ACATGTCCTACGGTTTCCCC 59.383 55.000 0.00 0.00 0.00 4.81
389 390 0.107361 CATGTCCTACGGTTTCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
407 408 4.803426 GGCACGCGGAGAGGAGTG 62.803 72.222 12.47 0.00 40.18 3.51
408 409 4.803426 GCACGCGGAGAGGAGTGG 62.803 72.222 12.47 0.00 38.05 4.00
409 410 3.062466 CACGCGGAGAGGAGTGGA 61.062 66.667 12.47 0.00 34.58 4.02
410 411 2.752238 ACGCGGAGAGGAGTGGAG 60.752 66.667 12.47 0.00 0.00 3.86
411 412 3.522731 CGCGGAGAGGAGTGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
412 413 2.043852 GCGGAGAGGAGTGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
413 414 1.456705 GCGGAGAGGAGTGGAGGAT 60.457 63.158 0.00 0.00 0.00 3.24
414 415 1.743321 GCGGAGAGGAGTGGAGGATG 61.743 65.000 0.00 0.00 0.00 3.51
415 416 1.112315 CGGAGAGGAGTGGAGGATGG 61.112 65.000 0.00 0.00 0.00 3.51
416 417 0.762461 GGAGAGGAGTGGAGGATGGG 60.762 65.000 0.00 0.00 0.00 4.00
417 418 0.031616 GAGAGGAGTGGAGGATGGGT 60.032 60.000 0.00 0.00 0.00 4.51
418 419 1.218196 GAGAGGAGTGGAGGATGGGTA 59.782 57.143 0.00 0.00 0.00 3.69
419 420 1.651770 AGAGGAGTGGAGGATGGGTAA 59.348 52.381 0.00 0.00 0.00 2.85
420 421 1.763545 GAGGAGTGGAGGATGGGTAAC 59.236 57.143 0.00 0.00 0.00 2.50
421 422 1.080498 AGGAGTGGAGGATGGGTAACA 59.920 52.381 0.00 0.00 39.74 2.41
422 423 1.209747 GGAGTGGAGGATGGGTAACAC 59.790 57.143 0.00 0.00 39.74 3.32
423 424 1.209747 GAGTGGAGGATGGGTAACACC 59.790 57.143 0.00 0.00 37.60 4.16
424 425 1.203440 AGTGGAGGATGGGTAACACCT 60.203 52.381 0.00 0.00 38.64 4.00
425 426 2.045326 AGTGGAGGATGGGTAACACCTA 59.955 50.000 0.00 0.00 38.64 3.08
426 427 2.169978 GTGGAGGATGGGTAACACCTAC 59.830 54.545 0.00 0.00 38.64 3.18
427 428 1.411612 GGAGGATGGGTAACACCTACG 59.588 57.143 0.00 0.00 38.64 3.51
428 429 0.828677 AGGATGGGTAACACCTACGC 59.171 55.000 0.00 0.00 42.42 4.42
429 430 0.179065 GGATGGGTAACACCTACGCC 60.179 60.000 0.00 0.00 41.62 5.68
430 431 0.179065 GATGGGTAACACCTACGCCC 60.179 60.000 0.00 0.00 41.62 6.13
431 432 1.629181 ATGGGTAACACCTACGCCCC 61.629 60.000 0.00 0.00 41.62 5.80
432 433 1.991722 GGGTAACACCTACGCCCCT 60.992 63.158 0.00 0.00 38.64 4.79
433 434 1.519246 GGTAACACCTACGCCCCTC 59.481 63.158 0.00 0.00 34.73 4.30
434 435 1.259840 GGTAACACCTACGCCCCTCA 61.260 60.000 0.00 0.00 34.73 3.86
435 436 0.175073 GTAACACCTACGCCCCTCAG 59.825 60.000 0.00 0.00 0.00 3.35
436 437 0.974010 TAACACCTACGCCCCTCAGG 60.974 60.000 0.00 0.00 39.47 3.86
437 438 2.363795 CACCTACGCCCCTCAGGA 60.364 66.667 0.00 0.00 38.24 3.86
438 439 1.987855 CACCTACGCCCCTCAGGAA 60.988 63.158 0.00 0.00 38.24 3.36
439 440 1.686110 ACCTACGCCCCTCAGGAAG 60.686 63.158 0.00 0.00 38.24 3.46
440 441 2.435693 CCTACGCCCCTCAGGAAGG 61.436 68.421 0.00 0.00 45.77 3.46
449 450 3.145228 CTCAGGAAGGAAAGGCGAC 57.855 57.895 0.00 0.00 0.00 5.19
450 451 0.321671 CTCAGGAAGGAAAGGCGACA 59.678 55.000 0.00 0.00 0.00 4.35
451 452 0.034896 TCAGGAAGGAAAGGCGACAC 59.965 55.000 0.00 0.00 0.00 3.67
452 453 0.955919 CAGGAAGGAAAGGCGACACC 60.956 60.000 0.00 0.00 39.61 4.16
453 454 1.674651 GGAAGGAAAGGCGACACCC 60.675 63.158 0.00 0.00 40.58 4.61
454 455 2.032071 AAGGAAAGGCGACACCCG 59.968 61.111 0.00 0.00 40.58 5.28
463 464 4.337060 CGACACCCGCAGACGACA 62.337 66.667 0.00 0.00 43.93 4.35
464 465 2.733593 GACACCCGCAGACGACAC 60.734 66.667 0.00 0.00 43.93 3.67
465 466 4.295119 ACACCCGCAGACGACACC 62.295 66.667 0.00 0.00 43.93 4.16
494 495 4.167597 GGAAGAACCGGCAACCAA 57.832 55.556 0.00 0.00 0.00 3.67
495 496 2.421220 GGAAGAACCGGCAACCAAA 58.579 52.632 0.00 0.00 0.00 3.28
496 497 0.313987 GGAAGAACCGGCAACCAAAG 59.686 55.000 0.00 0.00 0.00 2.77
497 498 1.029681 GAAGAACCGGCAACCAAAGT 58.970 50.000 0.00 0.00 0.00 2.66
498 499 2.223745 GAAGAACCGGCAACCAAAGTA 58.776 47.619 0.00 0.00 0.00 2.24
499 500 2.351706 AGAACCGGCAACCAAAGTAA 57.648 45.000 0.00 0.00 0.00 2.24
500 501 2.657143 AGAACCGGCAACCAAAGTAAA 58.343 42.857 0.00 0.00 0.00 2.01
501 502 3.227614 AGAACCGGCAACCAAAGTAAAT 58.772 40.909 0.00 0.00 0.00 1.40
502 503 3.639561 AGAACCGGCAACCAAAGTAAATT 59.360 39.130 0.00 0.00 0.00 1.82
503 504 4.100344 AGAACCGGCAACCAAAGTAAATTT 59.900 37.500 0.00 0.00 0.00 1.82
504 505 3.985008 ACCGGCAACCAAAGTAAATTTC 58.015 40.909 0.00 0.00 0.00 2.17
505 506 3.243941 ACCGGCAACCAAAGTAAATTTCC 60.244 43.478 0.00 0.00 0.00 3.13
506 507 3.243907 CCGGCAACCAAAGTAAATTTCCA 60.244 43.478 0.00 0.00 0.00 3.53
507 508 4.562552 CCGGCAACCAAAGTAAATTTCCAT 60.563 41.667 0.00 0.00 0.00 3.41
508 509 5.336849 CCGGCAACCAAAGTAAATTTCCATA 60.337 40.000 0.00 0.00 0.00 2.74
509 510 5.804979 CGGCAACCAAAGTAAATTTCCATAG 59.195 40.000 0.00 0.00 0.00 2.23
510 511 6.571537 CGGCAACCAAAGTAAATTTCCATAGT 60.572 38.462 0.00 0.00 0.00 2.12
511 512 6.589907 GGCAACCAAAGTAAATTTCCATAGTG 59.410 38.462 0.00 0.00 0.00 2.74
512 513 7.375053 GCAACCAAAGTAAATTTCCATAGTGA 58.625 34.615 0.00 0.00 0.00 3.41
513 514 7.542130 GCAACCAAAGTAAATTTCCATAGTGAG 59.458 37.037 0.00 0.00 0.00 3.51
514 515 8.792633 CAACCAAAGTAAATTTCCATAGTGAGA 58.207 33.333 0.00 0.00 0.00 3.27
515 516 8.934023 ACCAAAGTAAATTTCCATAGTGAGAA 57.066 30.769 0.00 0.00 0.00 2.87
516 517 9.362151 ACCAAAGTAAATTTCCATAGTGAGAAA 57.638 29.630 0.00 0.00 36.48 2.52
536 537 4.736126 AAAAATTATCGAAGGCCTTGGG 57.264 40.909 26.25 14.96 0.00 4.12
556 557 2.643551 GCTTCAGGCCTAAATACTGCA 58.356 47.619 3.98 0.00 34.27 4.41
557 558 3.016736 GCTTCAGGCCTAAATACTGCAA 58.983 45.455 3.98 0.00 34.27 4.08
558 559 3.633986 GCTTCAGGCCTAAATACTGCAAT 59.366 43.478 3.98 0.00 34.27 3.56
559 560 4.498682 GCTTCAGGCCTAAATACTGCAATG 60.499 45.833 3.98 0.00 34.27 2.82
560 561 4.235079 TCAGGCCTAAATACTGCAATGT 57.765 40.909 3.98 0.00 32.42 2.71
561 562 4.199310 TCAGGCCTAAATACTGCAATGTC 58.801 43.478 3.98 0.00 32.42 3.06
562 563 3.947196 CAGGCCTAAATACTGCAATGTCA 59.053 43.478 3.98 0.00 0.00 3.58
563 564 4.036027 CAGGCCTAAATACTGCAATGTCAG 59.964 45.833 3.98 3.74 39.86 3.51
564 565 3.243201 GGCCTAAATACTGCAATGTCAGC 60.243 47.826 0.00 0.00 37.59 4.26
565 566 3.243201 GCCTAAATACTGCAATGTCAGCC 60.243 47.826 4.95 0.00 37.59 4.85
566 567 3.316308 CCTAAATACTGCAATGTCAGCCC 59.684 47.826 4.95 0.00 37.59 5.19
567 568 2.512692 AATACTGCAATGTCAGCCCA 57.487 45.000 4.95 0.00 37.59 5.36
568 569 2.512692 ATACTGCAATGTCAGCCCAA 57.487 45.000 4.95 0.00 37.59 4.12
569 570 1.533625 TACTGCAATGTCAGCCCAAC 58.466 50.000 4.95 0.00 37.59 3.77
570 571 0.178981 ACTGCAATGTCAGCCCAACT 60.179 50.000 4.95 0.00 37.59 3.16
571 572 0.963962 CTGCAATGTCAGCCCAACTT 59.036 50.000 0.00 0.00 0.00 2.66
572 573 0.961019 TGCAATGTCAGCCCAACTTC 59.039 50.000 0.00 0.00 0.00 3.01
573 574 0.244721 GCAATGTCAGCCCAACTTCC 59.755 55.000 0.00 0.00 0.00 3.46
574 575 1.915141 CAATGTCAGCCCAACTTCCT 58.085 50.000 0.00 0.00 0.00 3.36
575 576 1.815003 CAATGTCAGCCCAACTTCCTC 59.185 52.381 0.00 0.00 0.00 3.71
576 577 0.329596 ATGTCAGCCCAACTTCCTCC 59.670 55.000 0.00 0.00 0.00 4.30
577 578 1.376037 GTCAGCCCAACTTCCTCCG 60.376 63.158 0.00 0.00 0.00 4.63
578 579 1.535444 TCAGCCCAACTTCCTCCGA 60.535 57.895 0.00 0.00 0.00 4.55
579 580 1.125093 TCAGCCCAACTTCCTCCGAA 61.125 55.000 0.00 0.00 0.00 4.30
592 593 3.585862 TCCTCCGAAGAAAAATGAGACG 58.414 45.455 0.00 0.00 0.00 4.18
593 594 3.006537 TCCTCCGAAGAAAAATGAGACGT 59.993 43.478 0.00 0.00 0.00 4.34
594 595 3.123621 CCTCCGAAGAAAAATGAGACGTG 59.876 47.826 0.00 0.00 0.00 4.49
595 596 3.985008 TCCGAAGAAAAATGAGACGTGA 58.015 40.909 0.00 0.00 0.00 4.35
596 597 4.566004 TCCGAAGAAAAATGAGACGTGAT 58.434 39.130 0.00 0.00 0.00 3.06
597 598 4.388773 TCCGAAGAAAAATGAGACGTGATG 59.611 41.667 0.00 0.00 0.00 3.07
598 599 4.084507 CGAAGAAAAATGAGACGTGATGC 58.915 43.478 0.00 0.00 0.00 3.91
599 600 4.406943 GAAGAAAAATGAGACGTGATGCC 58.593 43.478 0.00 0.00 0.00 4.40
600 601 3.411446 AGAAAAATGAGACGTGATGCCA 58.589 40.909 0.00 0.00 0.00 4.92
601 602 3.820467 AGAAAAATGAGACGTGATGCCAA 59.180 39.130 0.00 0.00 0.00 4.52
602 603 3.559238 AAAATGAGACGTGATGCCAAC 57.441 42.857 0.00 0.00 0.00 3.77
603 604 2.479566 AATGAGACGTGATGCCAACT 57.520 45.000 0.00 0.00 0.00 3.16
604 605 1.730501 ATGAGACGTGATGCCAACTG 58.269 50.000 0.00 0.00 0.00 3.16
605 606 0.320683 TGAGACGTGATGCCAACTGG 60.321 55.000 0.00 0.00 38.53 4.00
606 607 0.037326 GAGACGTGATGCCAACTGGA 60.037 55.000 0.00 0.00 37.39 3.86
607 608 0.396435 AGACGTGATGCCAACTGGAA 59.604 50.000 0.00 0.00 37.39 3.53
608 609 1.003580 AGACGTGATGCCAACTGGAAT 59.996 47.619 0.00 0.00 35.69 3.01
609 610 1.812571 GACGTGATGCCAACTGGAATT 59.187 47.619 0.00 0.00 32.14 2.17
610 611 2.228822 GACGTGATGCCAACTGGAATTT 59.771 45.455 0.00 0.00 32.14 1.82
611 612 2.627699 ACGTGATGCCAACTGGAATTTT 59.372 40.909 0.00 0.00 32.14 1.82
612 613 2.988493 CGTGATGCCAACTGGAATTTTG 59.012 45.455 0.00 0.00 32.14 2.44
613 614 3.552684 CGTGATGCCAACTGGAATTTTGT 60.553 43.478 0.00 0.00 32.14 2.83
614 615 4.379652 GTGATGCCAACTGGAATTTTGTT 58.620 39.130 0.00 0.00 32.14 2.83
615 616 5.537188 GTGATGCCAACTGGAATTTTGTTA 58.463 37.500 0.00 0.00 32.14 2.41
616 617 5.634859 GTGATGCCAACTGGAATTTTGTTAG 59.365 40.000 0.00 0.00 32.14 2.34
617 618 3.988819 TGCCAACTGGAATTTTGTTAGC 58.011 40.909 0.00 0.00 37.39 3.09
618 619 3.640967 TGCCAACTGGAATTTTGTTAGCT 59.359 39.130 0.00 0.00 37.39 3.32
619 620 4.100808 TGCCAACTGGAATTTTGTTAGCTT 59.899 37.500 0.00 0.00 37.39 3.74
620 621 5.056480 GCCAACTGGAATTTTGTTAGCTTT 58.944 37.500 0.00 0.00 37.39 3.51
621 622 5.177511 GCCAACTGGAATTTTGTTAGCTTTC 59.822 40.000 0.00 0.00 37.39 2.62
622 623 6.515832 CCAACTGGAATTTTGTTAGCTTTCT 58.484 36.000 0.00 0.00 37.39 2.52
623 624 6.642540 CCAACTGGAATTTTGTTAGCTTTCTC 59.357 38.462 0.00 0.00 37.39 2.87
624 625 7.428826 CAACTGGAATTTTGTTAGCTTTCTCT 58.571 34.615 0.00 0.00 0.00 3.10
625 626 7.208225 ACTGGAATTTTGTTAGCTTTCTCTC 57.792 36.000 0.00 0.00 0.00 3.20
626 627 7.001073 ACTGGAATTTTGTTAGCTTTCTCTCT 58.999 34.615 0.00 0.00 0.00 3.10
627 628 7.174080 ACTGGAATTTTGTTAGCTTTCTCTCTC 59.826 37.037 0.00 0.00 0.00 3.20
628 629 6.998074 TGGAATTTTGTTAGCTTTCTCTCTCA 59.002 34.615 0.00 0.00 0.00 3.27
629 630 7.502226 TGGAATTTTGTTAGCTTTCTCTCTCAA 59.498 33.333 0.00 0.00 0.00 3.02
630 631 8.352942 GGAATTTTGTTAGCTTTCTCTCTCAAA 58.647 33.333 0.00 0.00 0.00 2.69
631 632 9.736023 GAATTTTGTTAGCTTTCTCTCTCAAAA 57.264 29.630 0.00 0.00 35.49 2.44
661 662 4.935352 TTTGTTAGCTTCCATTTGCAGT 57.065 36.364 0.00 0.00 0.00 4.40
667 668 3.225104 AGCTTCCATTTGCAGTCAAGAA 58.775 40.909 0.00 0.00 33.12 2.52
669 670 3.985925 GCTTCCATTTGCAGTCAAGAAAG 59.014 43.478 0.00 0.00 33.12 2.62
713 714 3.618690 AGGAAAAACTCGGGATCTCTG 57.381 47.619 0.00 0.00 0.00 3.35
867 948 5.784578 ACAACCCCAAAATCTTGTTACTC 57.215 39.130 0.00 0.00 0.00 2.59
931 1012 1.338136 CCGCCATCTCAACTACCCCT 61.338 60.000 0.00 0.00 0.00 4.79
932 1013 1.410004 CGCCATCTCAACTACCCCTA 58.590 55.000 0.00 0.00 0.00 3.53
933 1014 1.341531 CGCCATCTCAACTACCCCTAG 59.658 57.143 0.00 0.00 0.00 3.02
945 1026 3.000819 CCCTAGCACCACCCACGA 61.001 66.667 0.00 0.00 0.00 4.35
1042 1123 1.544537 CCGATCTCTCTCGTGATCCCT 60.545 57.143 0.00 0.00 37.03 4.20
1047 1128 0.255033 TCTCTCGTGATCCCTCCGAA 59.745 55.000 0.00 0.00 0.00 4.30
1056 1137 3.812053 GTGATCCCTCCGAATCAATCTTG 59.188 47.826 0.00 0.00 0.00 3.02
1058 1139 1.134098 TCCCTCCGAATCAATCTTGGC 60.134 52.381 0.00 0.00 0.00 4.52
1085 1166 4.879686 ACGTGTGTTTGCGTGCGC 62.880 61.111 9.85 9.85 40.03 6.09
1465 1546 1.466856 TACTTCATCAGTACGCCCGT 58.533 50.000 0.00 0.00 36.88 5.28
1491 1572 3.138283 TCCATCCATCATAACCACCTTCC 59.862 47.826 0.00 0.00 0.00 3.46
1528 1609 4.650754 TCTTAACCGCACTCCTATCTTC 57.349 45.455 0.00 0.00 0.00 2.87
1567 1648 5.106396 CCAAGATCCAGCGATCAATTAATCC 60.106 44.000 4.68 0.00 46.42 3.01
1575 1656 6.348786 CCAGCGATCAATTAATCCATCGATTT 60.349 38.462 23.45 11.32 40.48 2.17
1576 1657 7.080099 CAGCGATCAATTAATCCATCGATTTT 58.920 34.615 23.45 9.64 40.48 1.82
1580 1661 9.322776 CGATCAATTAATCCATCGATTTTCTTC 57.677 33.333 17.95 0.00 40.48 2.87
1687 1768 4.389890 TGGTACGCGTACATTAATTCCT 57.610 40.909 40.57 6.99 37.78 3.36
1713 1794 8.442632 TCATTATTCTGGTGAAATCAGATCAC 57.557 34.615 0.00 0.00 45.08 3.06
1719 1800 3.252974 GTGAAATCAGATCACCCGTCT 57.747 47.619 0.00 0.00 41.02 4.18
1721 1802 4.113354 GTGAAATCAGATCACCCGTCTAC 58.887 47.826 0.00 0.00 41.02 2.59
1736 1823 3.822735 CCGTCTACGATGTTAATCCCCTA 59.177 47.826 3.65 0.00 43.02 3.53
1744 1831 5.588648 ACGATGTTAATCCCCTATGTTTGTG 59.411 40.000 0.00 0.00 0.00 3.33
1924 2024 8.184192 AGTTCGTAAATTGTCCATGAATTCATC 58.816 33.333 18.16 8.19 33.61 2.92
1931 2031 5.027293 TGTCCATGAATTCATCTGTCGAT 57.973 39.130 18.16 0.00 33.61 3.59
1932 2032 5.052481 TGTCCATGAATTCATCTGTCGATC 58.948 41.667 18.16 4.62 33.61 3.69
1933 2033 4.149571 GTCCATGAATTCATCTGTCGATCG 59.850 45.833 18.16 9.36 33.61 3.69
1936 2036 5.407691 CCATGAATTCATCTGTCGATCGATT 59.592 40.000 22.50 8.62 33.61 3.34
2049 2149 0.604073 TACATGACGAAGCGGTGGAA 59.396 50.000 0.00 0.00 0.00 3.53
2216 2316 1.749634 ACGAGTACCTGGACTACATGC 59.250 52.381 0.00 0.00 0.00 4.06
2526 2626 1.676014 GGCAGACCACACATGAGTACC 60.676 57.143 0.00 0.00 35.26 3.34
2527 2627 1.676014 GCAGACCACACATGAGTACCC 60.676 57.143 0.00 0.00 0.00 3.69
2528 2628 1.902508 CAGACCACACATGAGTACCCT 59.097 52.381 0.00 0.00 0.00 4.34
2530 2630 3.706594 CAGACCACACATGAGTACCCTAT 59.293 47.826 0.00 0.00 0.00 2.57
2531 2631 4.893524 CAGACCACACATGAGTACCCTATA 59.106 45.833 0.00 0.00 0.00 1.31
2532 2632 4.894114 AGACCACACATGAGTACCCTATAC 59.106 45.833 0.00 0.00 0.00 1.47
2533 2633 3.635373 ACCACACATGAGTACCCTATACG 59.365 47.826 0.00 0.00 0.00 3.06
2534 2634 3.635373 CCACACATGAGTACCCTATACGT 59.365 47.826 0.00 0.00 0.00 3.57
2535 2635 4.098960 CCACACATGAGTACCCTATACGTT 59.901 45.833 0.00 0.00 0.00 3.99
2536 2636 5.279384 CACACATGAGTACCCTATACGTTC 58.721 45.833 0.00 0.00 0.00 3.95
2537 2637 4.951715 ACACATGAGTACCCTATACGTTCA 59.048 41.667 0.00 0.00 0.00 3.18
2538 2638 5.067413 ACACATGAGTACCCTATACGTTCAG 59.933 44.000 0.00 0.00 0.00 3.02
2539 2639 5.298527 CACATGAGTACCCTATACGTTCAGA 59.701 44.000 0.00 0.00 0.00 3.27
2549 2649 3.735237 ATACGTTCAGATAGCCACAGG 57.265 47.619 0.00 0.00 0.00 4.00
2642 2773 2.159156 TGGATTCGTTACATCGGGACTG 60.159 50.000 0.00 0.00 0.00 3.51
2696 2953 2.028020 GGTGTCCCCTGTTCTCAGTTAG 60.028 54.545 0.00 0.00 39.82 2.34
2720 3082 4.759782 ACTGTATAAGCTACCAGCAACAG 58.240 43.478 15.37 15.37 45.56 3.16
2827 3236 6.751514 AGTAACACAATGTGTCAACTGAAA 57.248 33.333 24.45 3.35 46.79 2.69
2900 3320 9.571810 TGAATTAATTGCTAACATCAACACATC 57.428 29.630 5.17 0.00 0.00 3.06
2966 3386 8.892723 CATACCAAAACTTTAGCAGATGATGTA 58.107 33.333 0.00 0.00 0.00 2.29
2988 3408 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2989 3409 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2990 3410 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
2991 3411 1.136000 CACACACACACACACACACTG 60.136 52.381 0.00 0.00 0.00 3.66
2992 3412 1.270571 ACACACACACACACACACTGA 60.271 47.619 0.00 0.00 0.00 3.41
3018 3438 1.197721 GCAACTTTGTGGATGAGGACG 59.802 52.381 0.00 0.00 0.00 4.79
3023 3443 2.163818 TTGTGGATGAGGACGTCAAC 57.836 50.000 18.91 10.88 39.19 3.18
3294 3724 5.764686 TCTGTACCTTCTACACGTTCAGTAA 59.235 40.000 0.00 0.00 0.00 2.24
3322 3752 2.579201 CGCCCTCATCGGTGTTCT 59.421 61.111 0.00 0.00 0.00 3.01
3325 3755 1.519455 CCCTCATCGGTGTTCTCGC 60.519 63.158 0.00 0.00 0.00 5.03
3331 3761 0.744414 ATCGGTGTTCTCGCATTGGG 60.744 55.000 0.00 0.00 0.00 4.12
3493 3923 3.958147 ATCACGAGCACGGCCTTGG 62.958 63.158 11.75 0.00 44.46 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.139654 GCAGACACCATAGCTCATCCA 59.860 52.381 0.00 0.00 0.00 3.41
1 2 1.415659 AGCAGACACCATAGCTCATCC 59.584 52.381 0.00 0.00 30.05 3.51
2 3 2.481854 CAGCAGACACCATAGCTCATC 58.518 52.381 0.00 0.00 34.61 2.92
3 4 1.474677 GCAGCAGACACCATAGCTCAT 60.475 52.381 0.00 0.00 34.61 2.90
4 5 0.107993 GCAGCAGACACCATAGCTCA 60.108 55.000 0.00 0.00 34.61 4.26
5 6 0.177604 AGCAGCAGACACCATAGCTC 59.822 55.000 0.00 0.00 34.61 4.09
6 7 0.617413 AAGCAGCAGACACCATAGCT 59.383 50.000 0.00 0.00 37.95 3.32
7 8 1.012841 GAAGCAGCAGACACCATAGC 58.987 55.000 0.00 0.00 0.00 2.97
8 9 2.687700 AGAAGCAGCAGACACCATAG 57.312 50.000 0.00 0.00 0.00 2.23
9 10 2.568956 AGAAGAAGCAGCAGACACCATA 59.431 45.455 0.00 0.00 0.00 2.74
10 11 1.350351 AGAAGAAGCAGCAGACACCAT 59.650 47.619 0.00 0.00 0.00 3.55
11 12 0.761187 AGAAGAAGCAGCAGACACCA 59.239 50.000 0.00 0.00 0.00 4.17
12 13 1.889545 AAGAAGAAGCAGCAGACACC 58.110 50.000 0.00 0.00 0.00 4.16
13 14 3.978718 AAAAGAAGAAGCAGCAGACAC 57.021 42.857 0.00 0.00 0.00 3.67
33 34 1.132881 ACCATGGCTTCCCCTCAAAAA 60.133 47.619 13.04 0.00 0.00 1.94
34 35 0.486879 ACCATGGCTTCCCCTCAAAA 59.513 50.000 13.04 0.00 0.00 2.44
35 36 0.251742 CACCATGGCTTCCCCTCAAA 60.252 55.000 13.04 0.00 0.00 2.69
36 37 1.383799 CACCATGGCTTCCCCTCAA 59.616 57.895 13.04 0.00 0.00 3.02
37 38 1.852157 ACACCATGGCTTCCCCTCA 60.852 57.895 13.04 0.00 0.00 3.86
38 39 1.077429 GACACCATGGCTTCCCCTC 60.077 63.158 13.04 0.00 0.00 4.30
39 40 1.542375 AGACACCATGGCTTCCCCT 60.542 57.895 13.04 0.00 24.46 4.79
40 41 1.379044 CAGACACCATGGCTTCCCC 60.379 63.158 13.04 0.00 29.42 4.81
41 42 1.379044 CCAGACACCATGGCTTCCC 60.379 63.158 13.04 0.00 29.42 3.97
42 43 0.618458 TACCAGACACCATGGCTTCC 59.382 55.000 13.04 0.00 41.87 3.46
43 44 2.489938 TTACCAGACACCATGGCTTC 57.510 50.000 13.04 8.48 41.87 3.86
44 45 2.969821 TTTACCAGACACCATGGCTT 57.030 45.000 13.04 0.00 41.87 4.35
45 46 3.117888 CCTATTTACCAGACACCATGGCT 60.118 47.826 13.04 0.00 41.87 4.75
46 47 3.214328 CCTATTTACCAGACACCATGGC 58.786 50.000 13.04 0.00 41.87 4.40
47 48 3.214328 GCCTATTTACCAGACACCATGG 58.786 50.000 11.19 11.19 43.87 3.66
48 49 3.214328 GGCCTATTTACCAGACACCATG 58.786 50.000 0.00 0.00 0.00 3.66
49 50 2.158813 CGGCCTATTTACCAGACACCAT 60.159 50.000 0.00 0.00 0.00 3.55
50 51 1.208535 CGGCCTATTTACCAGACACCA 59.791 52.381 0.00 0.00 0.00 4.17
51 52 1.949465 CGGCCTATTTACCAGACACC 58.051 55.000 0.00 0.00 0.00 4.16
52 53 1.134491 AGCGGCCTATTTACCAGACAC 60.134 52.381 0.00 0.00 0.00 3.67
53 54 1.134521 CAGCGGCCTATTTACCAGACA 60.135 52.381 0.00 0.00 0.00 3.41
54 55 1.583054 CAGCGGCCTATTTACCAGAC 58.417 55.000 0.00 0.00 0.00 3.51
55 56 0.468226 CCAGCGGCCTATTTACCAGA 59.532 55.000 0.00 0.00 0.00 3.86
56 57 0.468226 TCCAGCGGCCTATTTACCAG 59.532 55.000 0.00 0.00 0.00 4.00
57 58 0.913205 TTCCAGCGGCCTATTTACCA 59.087 50.000 0.00 0.00 0.00 3.25
58 59 1.674441 GTTTCCAGCGGCCTATTTACC 59.326 52.381 0.00 0.00 0.00 2.85
59 60 1.674441 GGTTTCCAGCGGCCTATTTAC 59.326 52.381 0.00 0.00 0.00 2.01
60 61 1.562475 AGGTTTCCAGCGGCCTATTTA 59.438 47.619 0.00 0.00 0.00 1.40
61 62 0.331616 AGGTTTCCAGCGGCCTATTT 59.668 50.000 0.00 0.00 0.00 1.40
62 63 0.107165 GAGGTTTCCAGCGGCCTATT 60.107 55.000 0.00 0.00 0.00 1.73
63 64 1.271840 TGAGGTTTCCAGCGGCCTAT 61.272 55.000 0.00 0.00 0.00 2.57
64 65 1.271840 ATGAGGTTTCCAGCGGCCTA 61.272 55.000 0.00 0.00 0.00 3.93
65 66 2.543067 GATGAGGTTTCCAGCGGCCT 62.543 60.000 0.00 0.00 0.00 5.19
66 67 2.044946 ATGAGGTTTCCAGCGGCC 60.045 61.111 0.00 0.00 0.00 6.13
67 68 2.464459 CGATGAGGTTTCCAGCGGC 61.464 63.158 0.00 0.00 39.43 6.53
68 69 2.464459 GCGATGAGGTTTCCAGCGG 61.464 63.158 0.00 0.00 42.79 5.52
69 70 1.448540 AGCGATGAGGTTTCCAGCG 60.449 57.895 0.00 0.00 44.98 5.18
70 71 0.674895 ACAGCGATGAGGTTTCCAGC 60.675 55.000 8.12 0.00 0.00 4.85
71 72 1.066573 AGACAGCGATGAGGTTTCCAG 60.067 52.381 8.12 0.00 0.00 3.86
72 73 0.976641 AGACAGCGATGAGGTTTCCA 59.023 50.000 8.12 0.00 0.00 3.53
73 74 1.363744 CAGACAGCGATGAGGTTTCC 58.636 55.000 8.12 0.00 0.00 3.13
74 75 0.723981 GCAGACAGCGATGAGGTTTC 59.276 55.000 8.12 0.00 0.00 2.78
75 76 2.846371 GCAGACAGCGATGAGGTTT 58.154 52.632 8.12 0.00 0.00 3.27
76 77 4.606071 GCAGACAGCGATGAGGTT 57.394 55.556 8.12 0.00 0.00 3.50
85 86 5.175673 GTGAAAATTTACTTTGGCAGACAGC 59.824 40.000 0.00 0.00 44.65 4.40
86 87 5.691754 GGTGAAAATTTACTTTGGCAGACAG 59.308 40.000 0.00 0.00 0.00 3.51
87 88 5.596845 GGTGAAAATTTACTTTGGCAGACA 58.403 37.500 0.00 0.00 0.00 3.41
88 89 4.679654 CGGTGAAAATTTACTTTGGCAGAC 59.320 41.667 0.00 0.00 0.00 3.51
89 90 4.580995 TCGGTGAAAATTTACTTTGGCAGA 59.419 37.500 0.00 0.00 0.00 4.26
90 91 4.865776 TCGGTGAAAATTTACTTTGGCAG 58.134 39.130 0.00 0.00 0.00 4.85
91 92 4.920640 TCGGTGAAAATTTACTTTGGCA 57.079 36.364 0.00 0.00 0.00 4.92
92 93 6.591313 TTTTCGGTGAAAATTTACTTTGGC 57.409 33.333 0.81 0.00 36.73 4.52
93 94 7.492994 TCCTTTTTCGGTGAAAATTTACTTTGG 59.507 33.333 5.63 0.00 40.50 3.28
94 95 8.413899 TCCTTTTTCGGTGAAAATTTACTTTG 57.586 30.769 5.63 0.00 40.50 2.77
95 96 9.607988 AATCCTTTTTCGGTGAAAATTTACTTT 57.392 25.926 5.63 0.00 40.50 2.66
96 97 9.607988 AAATCCTTTTTCGGTGAAAATTTACTT 57.392 25.926 5.63 0.00 40.50 2.24
97 98 9.256477 GAAATCCTTTTTCGGTGAAAATTTACT 57.744 29.630 5.63 0.00 40.50 2.24
98 99 8.492748 GGAAATCCTTTTTCGGTGAAAATTTAC 58.507 33.333 5.63 1.68 40.50 2.01
99 100 7.658167 GGGAAATCCTTTTTCGGTGAAAATTTA 59.342 33.333 5.63 0.00 40.50 1.40
100 101 6.485313 GGGAAATCCTTTTTCGGTGAAAATTT 59.515 34.615 5.63 3.95 40.50 1.82
101 102 5.995282 GGGAAATCCTTTTTCGGTGAAAATT 59.005 36.000 5.63 0.00 40.50 1.82
102 103 5.512404 GGGGAAATCCTTTTTCGGTGAAAAT 60.512 40.000 5.63 0.00 40.50 1.82
103 104 4.202274 GGGGAAATCCTTTTTCGGTGAAAA 60.202 41.667 0.81 0.81 39.36 2.29
104 105 3.322541 GGGGAAATCCTTTTTCGGTGAAA 59.677 43.478 0.00 0.00 35.95 2.69
105 106 2.894765 GGGGAAATCCTTTTTCGGTGAA 59.105 45.455 0.00 0.00 35.95 3.18
106 107 2.521126 GGGGAAATCCTTTTTCGGTGA 58.479 47.619 0.00 0.00 35.95 4.02
107 108 1.548719 GGGGGAAATCCTTTTTCGGTG 59.451 52.381 0.00 0.00 35.95 4.94
108 109 1.933021 GGGGGAAATCCTTTTTCGGT 58.067 50.000 0.00 0.00 35.95 4.69
133 134 9.249053 TGATTGGTGGAAGTTGCTTTATTTATA 57.751 29.630 0.00 0.00 0.00 0.98
134 135 8.034804 GTGATTGGTGGAAGTTGCTTTATTTAT 58.965 33.333 0.00 0.00 0.00 1.40
135 136 7.014711 TGTGATTGGTGGAAGTTGCTTTATTTA 59.985 33.333 0.00 0.00 0.00 1.40
136 137 6.183360 TGTGATTGGTGGAAGTTGCTTTATTT 60.183 34.615 0.00 0.00 0.00 1.40
137 138 5.304101 TGTGATTGGTGGAAGTTGCTTTATT 59.696 36.000 0.00 0.00 0.00 1.40
138 139 4.832266 TGTGATTGGTGGAAGTTGCTTTAT 59.168 37.500 0.00 0.00 0.00 1.40
139 140 4.037446 GTGTGATTGGTGGAAGTTGCTTTA 59.963 41.667 0.00 0.00 0.00 1.85
140 141 3.030291 TGTGATTGGTGGAAGTTGCTTT 58.970 40.909 0.00 0.00 0.00 3.51
141 142 2.362077 GTGTGATTGGTGGAAGTTGCTT 59.638 45.455 0.00 0.00 0.00 3.91
142 143 1.956477 GTGTGATTGGTGGAAGTTGCT 59.044 47.619 0.00 0.00 0.00 3.91
143 144 1.334960 CGTGTGATTGGTGGAAGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
144 145 1.266718 CCGTGTGATTGGTGGAAGTTG 59.733 52.381 0.00 0.00 0.00 3.16
145 146 1.133915 ACCGTGTGATTGGTGGAAGTT 60.134 47.619 0.00 0.00 37.02 2.66
146 147 0.472471 ACCGTGTGATTGGTGGAAGT 59.528 50.000 0.00 0.00 37.02 3.01
147 148 2.465860 TACCGTGTGATTGGTGGAAG 57.534 50.000 0.00 0.00 39.30 3.46
148 149 2.105134 AGTTACCGTGTGATTGGTGGAA 59.895 45.455 0.00 0.00 39.30 3.53
149 150 1.695242 AGTTACCGTGTGATTGGTGGA 59.305 47.619 0.00 0.00 39.30 4.02
150 151 1.804151 CAGTTACCGTGTGATTGGTGG 59.196 52.381 0.00 0.00 39.30 4.61
151 152 1.196808 GCAGTTACCGTGTGATTGGTG 59.803 52.381 0.00 0.00 39.30 4.17
152 153 1.071699 AGCAGTTACCGTGTGATTGGT 59.928 47.619 0.00 0.00 42.34 3.67
153 154 1.464608 CAGCAGTTACCGTGTGATTGG 59.535 52.381 0.00 0.00 0.00 3.16
154 155 1.464608 CCAGCAGTTACCGTGTGATTG 59.535 52.381 0.00 0.00 0.00 2.67
155 156 1.610624 CCCAGCAGTTACCGTGTGATT 60.611 52.381 0.00 0.00 0.00 2.57
156 157 0.036388 CCCAGCAGTTACCGTGTGAT 60.036 55.000 0.00 0.00 0.00 3.06
157 158 1.369692 CCCAGCAGTTACCGTGTGA 59.630 57.895 0.00 0.00 0.00 3.58
158 159 1.671054 CCCCAGCAGTTACCGTGTG 60.671 63.158 0.00 0.00 0.00 3.82
159 160 2.747686 CCCCAGCAGTTACCGTGT 59.252 61.111 0.00 0.00 0.00 4.49
160 161 2.746277 GCCCCAGCAGTTACCGTG 60.746 66.667 0.00 0.00 39.53 4.94
161 162 3.246112 TGCCCCAGCAGTTACCGT 61.246 61.111 0.00 0.00 46.52 4.83
171 172 2.282674 ATGTGCTGTGTGCCCCAG 60.283 61.111 0.00 0.00 42.00 4.45
172 173 2.282391 GATGTGCTGTGTGCCCCA 60.282 61.111 0.00 0.00 42.00 4.96
173 174 1.870055 CTTGATGTGCTGTGTGCCCC 61.870 60.000 0.00 0.00 42.00 5.80
174 175 1.582968 CTTGATGTGCTGTGTGCCC 59.417 57.895 0.00 0.00 42.00 5.36
175 176 1.080974 GCTTGATGTGCTGTGTGCC 60.081 57.895 0.00 0.00 42.00 5.01
176 177 1.080974 GGCTTGATGTGCTGTGTGC 60.081 57.895 0.00 0.00 43.25 4.57
177 178 1.174078 TGGGCTTGATGTGCTGTGTG 61.174 55.000 0.00 0.00 0.00 3.82
178 179 0.467844 TTGGGCTTGATGTGCTGTGT 60.468 50.000 0.00 0.00 0.00 3.72
179 180 0.675083 TTTGGGCTTGATGTGCTGTG 59.325 50.000 0.00 0.00 0.00 3.66
180 181 1.342174 CTTTTGGGCTTGATGTGCTGT 59.658 47.619 0.00 0.00 0.00 4.40
181 182 1.614903 TCTTTTGGGCTTGATGTGCTG 59.385 47.619 0.00 0.00 0.00 4.41
182 183 1.891150 CTCTTTTGGGCTTGATGTGCT 59.109 47.619 0.00 0.00 0.00 4.40
183 184 1.888512 TCTCTTTTGGGCTTGATGTGC 59.111 47.619 0.00 0.00 0.00 4.57
184 185 4.589216 TTTCTCTTTTGGGCTTGATGTG 57.411 40.909 0.00 0.00 0.00 3.21
185 186 5.612725 TTTTTCTCTTTTGGGCTTGATGT 57.387 34.783 0.00 0.00 0.00 3.06
204 205 7.304735 GTTGTTGGCATTTTGTTCTTCTTTTT 58.695 30.769 0.00 0.00 0.00 1.94
205 206 6.402011 CGTTGTTGGCATTTTGTTCTTCTTTT 60.402 34.615 0.00 0.00 0.00 2.27
206 207 5.063312 CGTTGTTGGCATTTTGTTCTTCTTT 59.937 36.000 0.00 0.00 0.00 2.52
207 208 4.566360 CGTTGTTGGCATTTTGTTCTTCTT 59.434 37.500 0.00 0.00 0.00 2.52
208 209 4.111916 CGTTGTTGGCATTTTGTTCTTCT 58.888 39.130 0.00 0.00 0.00 2.85
209 210 3.245048 CCGTTGTTGGCATTTTGTTCTTC 59.755 43.478 0.00 0.00 0.00 2.87
210 211 3.194062 CCGTTGTTGGCATTTTGTTCTT 58.806 40.909 0.00 0.00 0.00 2.52
211 212 2.820330 CCGTTGTTGGCATTTTGTTCT 58.180 42.857 0.00 0.00 0.00 3.01
222 223 2.637025 CCGAGTTGCCGTTGTTGG 59.363 61.111 0.00 0.00 0.00 3.77
223 224 2.051345 GCCGAGTTGCCGTTGTTG 60.051 61.111 0.00 0.00 0.00 3.33
224 225 1.658686 TTTGCCGAGTTGCCGTTGTT 61.659 50.000 0.00 0.00 0.00 2.83
225 226 2.058829 CTTTGCCGAGTTGCCGTTGT 62.059 55.000 0.00 0.00 0.00 3.32
226 227 1.370414 CTTTGCCGAGTTGCCGTTG 60.370 57.895 0.00 0.00 0.00 4.10
227 228 3.030652 CTTTGCCGAGTTGCCGTT 58.969 55.556 0.00 0.00 0.00 4.44
228 229 2.725203 TAGCTTTGCCGAGTTGCCGT 62.725 55.000 0.00 0.00 0.00 5.68
229 230 1.573829 TTAGCTTTGCCGAGTTGCCG 61.574 55.000 0.00 0.00 0.00 5.69
230 231 0.169009 CTTAGCTTTGCCGAGTTGCC 59.831 55.000 0.00 0.00 0.00 4.52
231 232 1.156736 TCTTAGCTTTGCCGAGTTGC 58.843 50.000 0.00 0.00 0.00 4.17
232 233 3.002791 TCATCTTAGCTTTGCCGAGTTG 58.997 45.455 0.00 0.00 0.00 3.16
233 234 3.334583 TCATCTTAGCTTTGCCGAGTT 57.665 42.857 0.00 0.00 0.00 3.01
234 235 3.133721 AGATCATCTTAGCTTTGCCGAGT 59.866 43.478 0.00 0.00 0.00 4.18
235 236 3.493877 CAGATCATCTTAGCTTTGCCGAG 59.506 47.826 0.00 0.00 0.00 4.63
236 237 3.461061 CAGATCATCTTAGCTTTGCCGA 58.539 45.455 0.00 0.00 0.00 5.54
237 238 2.032204 GCAGATCATCTTAGCTTTGCCG 60.032 50.000 0.00 0.00 0.00 5.69
238 239 2.292845 GGCAGATCATCTTAGCTTTGCC 59.707 50.000 0.00 0.00 42.45 4.52
239 240 3.212685 AGGCAGATCATCTTAGCTTTGC 58.787 45.455 0.00 0.00 0.00 3.68
240 241 3.814283 GGAGGCAGATCATCTTAGCTTTG 59.186 47.826 0.00 0.00 0.00 2.77
241 242 3.494048 CGGAGGCAGATCATCTTAGCTTT 60.494 47.826 0.00 0.00 0.00 3.51
242 243 2.036992 CGGAGGCAGATCATCTTAGCTT 59.963 50.000 0.00 0.00 0.00 3.74
243 244 1.617850 CGGAGGCAGATCATCTTAGCT 59.382 52.381 0.00 0.00 0.00 3.32
244 245 1.938926 GCGGAGGCAGATCATCTTAGC 60.939 57.143 0.00 0.00 39.62 3.09
245 246 1.617850 AGCGGAGGCAGATCATCTTAG 59.382 52.381 0.00 0.00 43.41 2.18
246 247 1.342496 CAGCGGAGGCAGATCATCTTA 59.658 52.381 0.00 0.00 43.41 2.10
247 248 0.106335 CAGCGGAGGCAGATCATCTT 59.894 55.000 0.00 0.00 43.41 2.40
248 249 1.747145 CAGCGGAGGCAGATCATCT 59.253 57.895 0.00 0.00 43.41 2.90
249 250 1.960250 GCAGCGGAGGCAGATCATC 60.960 63.158 0.00 0.00 43.41 2.92
250 251 2.110627 GCAGCGGAGGCAGATCAT 59.889 61.111 0.00 0.00 43.41 2.45
251 252 4.519437 CGCAGCGGAGGCAGATCA 62.519 66.667 7.00 0.00 43.41 2.92
275 276 0.953960 GTGTGTGGTGGGACGAATCC 60.954 60.000 0.00 0.00 45.42 3.01
276 277 0.953960 GGTGTGTGGTGGGACGAATC 60.954 60.000 0.00 0.00 0.00 2.52
277 278 1.072505 GGTGTGTGGTGGGACGAAT 59.927 57.895 0.00 0.00 0.00 3.34
278 279 1.911702 TTGGTGTGTGGTGGGACGAA 61.912 55.000 0.00 0.00 0.00 3.85
279 280 2.318519 CTTGGTGTGTGGTGGGACGA 62.319 60.000 0.00 0.00 0.00 4.20
280 281 1.891919 CTTGGTGTGTGGTGGGACG 60.892 63.158 0.00 0.00 0.00 4.79
281 282 1.528309 CCTTGGTGTGTGGTGGGAC 60.528 63.158 0.00 0.00 0.00 4.46
282 283 2.923035 CCTTGGTGTGTGGTGGGA 59.077 61.111 0.00 0.00 0.00 4.37
283 284 2.912025 GCCTTGGTGTGTGGTGGG 60.912 66.667 0.00 0.00 0.00 4.61
284 285 1.898574 GAGCCTTGGTGTGTGGTGG 60.899 63.158 0.00 0.00 0.00 4.61
285 286 1.898574 GGAGCCTTGGTGTGTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
286 287 2.515901 GGAGCCTTGGTGTGTGGT 59.484 61.111 0.00 0.00 0.00 4.16
287 288 2.669569 CGGAGCCTTGGTGTGTGG 60.670 66.667 0.00 0.00 0.00 4.17
288 289 0.606401 ATTCGGAGCCTTGGTGTGTG 60.606 55.000 0.00 0.00 0.00 3.82
289 290 0.321653 GATTCGGAGCCTTGGTGTGT 60.322 55.000 0.00 0.00 0.00 3.72
290 291 1.361668 CGATTCGGAGCCTTGGTGTG 61.362 60.000 0.00 0.00 0.00 3.82
291 292 1.079127 CGATTCGGAGCCTTGGTGT 60.079 57.895 0.00 0.00 0.00 4.16
292 293 2.464459 GCGATTCGGAGCCTTGGTG 61.464 63.158 8.34 0.00 0.00 4.17
293 294 2.125106 GCGATTCGGAGCCTTGGT 60.125 61.111 8.34 0.00 0.00 3.67
299 300 4.918129 TACGCGGCGATTCGGAGC 62.918 66.667 30.94 0.00 0.00 4.70
300 301 2.278336 TTACGCGGCGATTCGGAG 60.278 61.111 30.94 0.00 0.00 4.63
301 302 2.580326 GTTACGCGGCGATTCGGA 60.580 61.111 30.94 0.00 0.00 4.55
302 303 3.623330 GGTTACGCGGCGATTCGG 61.623 66.667 30.94 0.00 0.00 4.30
303 304 2.342871 CTTGGTTACGCGGCGATTCG 62.343 60.000 30.94 7.60 0.00 3.34
304 305 1.347221 CTTGGTTACGCGGCGATTC 59.653 57.895 30.94 16.71 0.00 2.52
305 306 2.746803 GCTTGGTTACGCGGCGATT 61.747 57.895 30.94 10.38 0.00 3.34
306 307 3.192922 GCTTGGTTACGCGGCGAT 61.193 61.111 30.94 15.55 0.00 4.58
307 308 4.666397 TGCTTGGTTACGCGGCGA 62.666 61.111 30.94 10.01 0.00 5.54
308 309 4.147322 CTGCTTGGTTACGCGGCG 62.147 66.667 22.36 22.36 0.00 6.46
310 311 3.047280 TGCTGCTTGGTTACGCGG 61.047 61.111 12.47 0.00 35.65 6.46
311 312 2.173382 GTGCTGCTTGGTTACGCG 59.827 61.111 3.53 3.53 0.00 6.01
312 313 1.912371 GAGGTGCTGCTTGGTTACGC 61.912 60.000 0.00 0.00 0.00 4.42
313 314 1.298859 GGAGGTGCTGCTTGGTTACG 61.299 60.000 0.00 0.00 0.00 3.18
314 315 0.250727 TGGAGGTGCTGCTTGGTTAC 60.251 55.000 0.00 0.00 0.00 2.50
315 316 0.476338 TTGGAGGTGCTGCTTGGTTA 59.524 50.000 0.00 0.00 0.00 2.85
316 317 0.825010 CTTGGAGGTGCTGCTTGGTT 60.825 55.000 0.00 0.00 0.00 3.67
317 318 1.228367 CTTGGAGGTGCTGCTTGGT 60.228 57.895 0.00 0.00 0.00 3.67
318 319 0.538057 TTCTTGGAGGTGCTGCTTGG 60.538 55.000 0.00 0.00 0.00 3.61
319 320 0.879765 CTTCTTGGAGGTGCTGCTTG 59.120 55.000 0.00 0.00 0.00 4.01
320 321 0.251077 CCTTCTTGGAGGTGCTGCTT 60.251 55.000 0.00 0.00 38.35 3.91
321 322 1.377994 CCTTCTTGGAGGTGCTGCT 59.622 57.895 0.00 0.00 38.35 4.24
322 323 1.676967 CCCTTCTTGGAGGTGCTGC 60.677 63.158 0.00 0.00 38.35 5.25
323 324 1.001641 CCCCTTCTTGGAGGTGCTG 60.002 63.158 0.00 0.00 38.35 4.41
324 325 1.464198 ACCCCTTCTTGGAGGTGCT 60.464 57.895 0.00 0.00 37.78 4.40
325 326 1.303643 CACCCCTTCTTGGAGGTGC 60.304 63.158 8.59 0.00 44.36 5.01
327 328 1.360393 TTGCACCCCTTCTTGGAGGT 61.360 55.000 0.00 0.00 39.11 3.85
328 329 0.895559 GTTGCACCCCTTCTTGGAGG 60.896 60.000 0.00 0.00 38.35 4.30
329 330 0.178992 TGTTGCACCCCTTCTTGGAG 60.179 55.000 0.00 0.00 38.35 3.86
330 331 0.482446 ATGTTGCACCCCTTCTTGGA 59.518 50.000 0.00 0.00 38.35 3.53
331 332 0.890683 GATGTTGCACCCCTTCTTGG 59.109 55.000 0.00 0.00 0.00 3.61
332 333 0.523072 CGATGTTGCACCCCTTCTTG 59.477 55.000 0.00 0.00 0.00 3.02
333 334 0.400213 TCGATGTTGCACCCCTTCTT 59.600 50.000 0.00 0.00 0.00 2.52
334 335 0.321653 GTCGATGTTGCACCCCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
335 336 1.635663 CGTCGATGTTGCACCCCTTC 61.636 60.000 0.00 0.00 0.00 3.46
336 337 1.671054 CGTCGATGTTGCACCCCTT 60.671 57.895 0.00 0.00 0.00 3.95
337 338 1.899437 ATCGTCGATGTTGCACCCCT 61.899 55.000 7.00 0.00 0.00 4.79
338 339 1.449601 ATCGTCGATGTTGCACCCC 60.450 57.895 7.00 0.00 0.00 4.95
339 340 1.715585 CATCGTCGATGTTGCACCC 59.284 57.895 24.11 0.00 35.54 4.61
340 341 1.060937 GCATCGTCGATGTTGCACC 59.939 57.895 30.29 13.31 41.60 5.01
341 342 0.247419 CAGCATCGTCGATGTTGCAC 60.247 55.000 30.55 17.23 42.34 4.57
342 343 2.080700 CAGCATCGTCGATGTTGCA 58.919 52.632 30.55 4.97 42.34 4.08
343 344 4.961622 CAGCATCGTCGATGTTGC 57.038 55.556 30.55 26.16 42.34 4.17
345 346 1.699656 GCAGCAGCATCGTCGATGTT 61.700 55.000 30.29 24.45 41.60 2.71
346 347 2.169789 GCAGCAGCATCGTCGATGT 61.170 57.895 30.29 17.55 41.60 3.06
347 348 2.624811 GCAGCAGCATCGTCGATG 59.375 61.111 27.22 27.22 42.37 3.84
348 349 2.587194 GGCAGCAGCATCGTCGAT 60.587 61.111 0.75 0.75 44.61 3.59
349 350 4.819761 GGGCAGCAGCATCGTCGA 62.820 66.667 2.65 0.00 44.61 4.20
354 355 4.783621 TGTCCGGGCAGCAGCATC 62.784 66.667 3.51 0.00 44.61 3.91
355 356 4.119363 ATGTCCGGGCAGCAGCAT 62.119 61.111 16.89 0.00 44.61 3.79
358 359 2.821366 GACATGTCCGGGCAGCAG 60.821 66.667 16.89 9.80 0.00 4.24
359 360 4.408821 GGACATGTCCGGGCAGCA 62.409 66.667 28.52 2.94 40.36 4.41
390 391 4.803426 CACTCCTCTCCGCGTGCC 62.803 72.222 4.92 0.00 0.00 5.01
391 392 4.803426 CCACTCCTCTCCGCGTGC 62.803 72.222 4.92 0.00 0.00 5.34
392 393 3.057547 CTCCACTCCTCTCCGCGTG 62.058 68.421 4.92 0.00 0.00 5.34
393 394 2.752238 CTCCACTCCTCTCCGCGT 60.752 66.667 4.92 0.00 0.00 6.01
394 395 3.522731 CCTCCACTCCTCTCCGCG 61.523 72.222 0.00 0.00 0.00 6.46
395 396 1.456705 ATCCTCCACTCCTCTCCGC 60.457 63.158 0.00 0.00 0.00 5.54
396 397 1.112315 CCATCCTCCACTCCTCTCCG 61.112 65.000 0.00 0.00 0.00 4.63
397 398 0.762461 CCCATCCTCCACTCCTCTCC 60.762 65.000 0.00 0.00 0.00 3.71
398 399 0.031616 ACCCATCCTCCACTCCTCTC 60.032 60.000 0.00 0.00 0.00 3.20
399 400 1.319947 TACCCATCCTCCACTCCTCT 58.680 55.000 0.00 0.00 0.00 3.69
400 401 1.763545 GTTACCCATCCTCCACTCCTC 59.236 57.143 0.00 0.00 0.00 3.71
401 402 1.080498 TGTTACCCATCCTCCACTCCT 59.920 52.381 0.00 0.00 0.00 3.69
402 403 1.209747 GTGTTACCCATCCTCCACTCC 59.790 57.143 0.00 0.00 0.00 3.85
403 404 1.209747 GGTGTTACCCATCCTCCACTC 59.790 57.143 0.00 0.00 30.04 3.51
404 405 1.203440 AGGTGTTACCCATCCTCCACT 60.203 52.381 0.00 0.00 39.75 4.00
405 406 1.286248 AGGTGTTACCCATCCTCCAC 58.714 55.000 0.00 0.00 39.75 4.02
406 407 2.474112 GTAGGTGTTACCCATCCTCCA 58.526 52.381 0.00 0.00 39.75 3.86
407 408 1.411612 CGTAGGTGTTACCCATCCTCC 59.588 57.143 0.00 0.00 39.75 4.30
408 409 1.202498 GCGTAGGTGTTACCCATCCTC 60.202 57.143 0.00 0.00 39.75 3.71
409 410 0.828677 GCGTAGGTGTTACCCATCCT 59.171 55.000 0.00 0.00 39.75 3.24
410 411 0.179065 GGCGTAGGTGTTACCCATCC 60.179 60.000 0.00 0.00 39.75 3.51
411 412 0.179065 GGGCGTAGGTGTTACCCATC 60.179 60.000 0.00 0.00 39.75 3.51
412 413 1.629181 GGGGCGTAGGTGTTACCCAT 61.629 60.000 0.00 0.00 42.76 4.00
413 414 2.292559 GGGGCGTAGGTGTTACCCA 61.293 63.158 0.00 0.00 42.76 4.51
414 415 1.964608 GAGGGGCGTAGGTGTTACCC 61.965 65.000 0.00 0.00 39.75 3.69
415 416 1.259840 TGAGGGGCGTAGGTGTTACC 61.260 60.000 0.00 0.00 38.99 2.85
416 417 0.175073 CTGAGGGGCGTAGGTGTTAC 59.825 60.000 0.00 0.00 0.00 2.50
417 418 0.974010 CCTGAGGGGCGTAGGTGTTA 60.974 60.000 0.00 0.00 0.00 2.41
418 419 2.291043 CCTGAGGGGCGTAGGTGTT 61.291 63.158 0.00 0.00 0.00 3.32
419 420 2.683933 CCTGAGGGGCGTAGGTGT 60.684 66.667 0.00 0.00 0.00 4.16
420 421 1.961180 CTTCCTGAGGGGCGTAGGTG 61.961 65.000 0.00 0.00 33.30 4.00
421 422 1.686110 CTTCCTGAGGGGCGTAGGT 60.686 63.158 0.00 0.00 33.30 3.08
422 423 2.435693 CCTTCCTGAGGGGCGTAGG 61.436 68.421 0.00 0.00 42.26 3.18
423 424 0.976073 TTCCTTCCTGAGGGGCGTAG 60.976 60.000 0.00 0.00 46.31 3.51
424 425 0.545787 TTTCCTTCCTGAGGGGCGTA 60.546 55.000 0.00 0.00 46.31 4.42
425 426 1.842381 CTTTCCTTCCTGAGGGGCGT 61.842 60.000 0.00 0.00 46.31 5.68
426 427 1.078143 CTTTCCTTCCTGAGGGGCG 60.078 63.158 0.00 0.00 46.31 6.13
427 428 1.304617 CCTTTCCTTCCTGAGGGGC 59.695 63.158 0.00 0.00 46.31 5.80
428 429 1.304617 GCCTTTCCTTCCTGAGGGG 59.695 63.158 0.00 0.00 46.31 4.79
429 430 1.078143 CGCCTTTCCTTCCTGAGGG 60.078 63.158 0.00 0.00 46.31 4.30
431 432 0.321671 TGTCGCCTTTCCTTCCTGAG 59.678 55.000 0.00 0.00 0.00 3.35
432 433 0.034896 GTGTCGCCTTTCCTTCCTGA 59.965 55.000 0.00 0.00 0.00 3.86
433 434 0.955919 GGTGTCGCCTTTCCTTCCTG 60.956 60.000 0.00 0.00 0.00 3.86
434 435 1.375326 GGTGTCGCCTTTCCTTCCT 59.625 57.895 0.00 0.00 0.00 3.36
435 436 1.674651 GGGTGTCGCCTTTCCTTCC 60.675 63.158 1.66 0.00 37.43 3.46
436 437 2.033194 CGGGTGTCGCCTTTCCTTC 61.033 63.158 1.66 0.00 37.43 3.46
437 438 2.032071 CGGGTGTCGCCTTTCCTT 59.968 61.111 1.66 0.00 37.43 3.36
446 447 4.337060 TGTCGTCTGCGGGTGTCG 62.337 66.667 0.00 0.00 42.76 4.35
447 448 2.733593 GTGTCGTCTGCGGGTGTC 60.734 66.667 0.00 0.00 38.89 3.67
448 449 4.295119 GGTGTCGTCTGCGGGTGT 62.295 66.667 0.00 0.00 38.89 4.16
477 478 0.313987 CTTTGGTTGCCGGTTCTTCC 59.686 55.000 1.90 0.00 0.00 3.46
478 479 1.029681 ACTTTGGTTGCCGGTTCTTC 58.970 50.000 1.90 0.00 0.00 2.87
479 480 2.351706 TACTTTGGTTGCCGGTTCTT 57.648 45.000 1.90 0.00 0.00 2.52
480 481 2.351706 TTACTTTGGTTGCCGGTTCT 57.648 45.000 1.90 0.00 0.00 3.01
481 482 3.653539 ATTTACTTTGGTTGCCGGTTC 57.346 42.857 1.90 0.00 0.00 3.62
482 483 4.373527 GAAATTTACTTTGGTTGCCGGTT 58.626 39.130 1.90 0.00 0.00 4.44
483 484 3.243941 GGAAATTTACTTTGGTTGCCGGT 60.244 43.478 1.90 0.00 0.00 5.28
484 485 3.243907 TGGAAATTTACTTTGGTTGCCGG 60.244 43.478 0.00 0.00 0.00 6.13
485 486 3.983741 TGGAAATTTACTTTGGTTGCCG 58.016 40.909 1.27 0.00 0.00 5.69
486 487 6.589907 CACTATGGAAATTTACTTTGGTTGCC 59.410 38.462 1.27 0.00 0.00 4.52
487 488 7.375053 TCACTATGGAAATTTACTTTGGTTGC 58.625 34.615 1.27 0.00 0.00 4.17
488 489 8.792633 TCTCACTATGGAAATTTACTTTGGTTG 58.207 33.333 1.27 0.00 0.00 3.77
489 490 8.934023 TCTCACTATGGAAATTTACTTTGGTT 57.066 30.769 1.27 0.00 0.00 3.67
490 491 8.934023 TTCTCACTATGGAAATTTACTTTGGT 57.066 30.769 1.27 0.00 0.00 3.67
515 516 3.118775 GCCCAAGGCCTTCGATAATTTTT 60.119 43.478 17.29 0.00 44.06 1.94
516 517 2.430694 GCCCAAGGCCTTCGATAATTTT 59.569 45.455 17.29 0.00 44.06 1.82
517 518 2.031870 GCCCAAGGCCTTCGATAATTT 58.968 47.619 17.29 0.00 44.06 1.82
518 519 1.692411 GCCCAAGGCCTTCGATAATT 58.308 50.000 17.29 0.00 44.06 1.40
519 520 3.421567 GCCCAAGGCCTTCGATAAT 57.578 52.632 17.29 0.00 44.06 1.28
520 521 4.977393 GCCCAAGGCCTTCGATAA 57.023 55.556 17.29 0.00 44.06 1.75
536 537 2.643551 TGCAGTATTTAGGCCTGAAGC 58.356 47.619 17.99 13.73 42.60 3.86
537 538 4.641989 ACATTGCAGTATTTAGGCCTGAAG 59.358 41.667 17.99 2.35 0.00 3.02
538 539 4.599041 ACATTGCAGTATTTAGGCCTGAA 58.401 39.130 17.99 15.33 0.00 3.02
539 540 4.199310 GACATTGCAGTATTTAGGCCTGA 58.801 43.478 17.99 3.42 0.00 3.86
540 541 3.947196 TGACATTGCAGTATTTAGGCCTG 59.053 43.478 17.99 0.00 0.00 4.85
541 542 4.202441 CTGACATTGCAGTATTTAGGCCT 58.798 43.478 11.78 11.78 0.00 5.19
542 543 3.243201 GCTGACATTGCAGTATTTAGGCC 60.243 47.826 0.00 0.00 38.17 5.19
543 544 3.243201 GGCTGACATTGCAGTATTTAGGC 60.243 47.826 9.00 0.00 38.17 3.93
544 545 3.316308 GGGCTGACATTGCAGTATTTAGG 59.684 47.826 9.00 0.00 38.17 2.69
545 546 3.947196 TGGGCTGACATTGCAGTATTTAG 59.053 43.478 9.00 0.00 38.17 1.85
546 547 3.961849 TGGGCTGACATTGCAGTATTTA 58.038 40.909 9.00 0.00 38.17 1.40
547 548 2.806434 TGGGCTGACATTGCAGTATTT 58.194 42.857 9.00 0.00 38.17 1.40
548 549 2.493278 GTTGGGCTGACATTGCAGTATT 59.507 45.455 9.00 0.00 38.17 1.89
549 550 2.094675 GTTGGGCTGACATTGCAGTAT 58.905 47.619 9.00 0.00 38.17 2.12
550 551 1.073763 AGTTGGGCTGACATTGCAGTA 59.926 47.619 9.00 0.00 38.17 2.74
551 552 0.178981 AGTTGGGCTGACATTGCAGT 60.179 50.000 9.00 0.00 38.17 4.40
552 553 0.963962 AAGTTGGGCTGACATTGCAG 59.036 50.000 0.00 0.00 38.91 4.41
553 554 0.961019 GAAGTTGGGCTGACATTGCA 59.039 50.000 0.00 0.00 0.00 4.08
554 555 0.244721 GGAAGTTGGGCTGACATTGC 59.755 55.000 0.00 0.00 0.00 3.56
555 556 1.815003 GAGGAAGTTGGGCTGACATTG 59.185 52.381 0.00 0.00 0.00 2.82
556 557 1.272147 GGAGGAAGTTGGGCTGACATT 60.272 52.381 0.00 0.00 0.00 2.71
557 558 0.329596 GGAGGAAGTTGGGCTGACAT 59.670 55.000 0.00 0.00 0.00 3.06
558 559 1.761174 GGAGGAAGTTGGGCTGACA 59.239 57.895 0.00 0.00 0.00 3.58
559 560 1.376037 CGGAGGAAGTTGGGCTGAC 60.376 63.158 0.00 0.00 0.00 3.51
560 561 1.125093 TTCGGAGGAAGTTGGGCTGA 61.125 55.000 0.00 0.00 0.00 4.26
561 562 0.674895 CTTCGGAGGAAGTTGGGCTG 60.675 60.000 0.00 0.00 43.80 4.85
562 563 1.679898 CTTCGGAGGAAGTTGGGCT 59.320 57.895 0.00 0.00 43.80 5.19
563 564 4.303257 CTTCGGAGGAAGTTGGGC 57.697 61.111 0.00 0.00 43.80 5.36
570 571 3.994392 CGTCTCATTTTTCTTCGGAGGAA 59.006 43.478 0.00 0.00 0.00 3.36
571 572 3.006537 ACGTCTCATTTTTCTTCGGAGGA 59.993 43.478 0.00 0.00 0.00 3.71
572 573 3.123621 CACGTCTCATTTTTCTTCGGAGG 59.876 47.826 0.00 0.00 0.00 4.30
573 574 3.987868 TCACGTCTCATTTTTCTTCGGAG 59.012 43.478 0.00 0.00 0.00 4.63
574 575 3.985008 TCACGTCTCATTTTTCTTCGGA 58.015 40.909 0.00 0.00 0.00 4.55
575 576 4.641954 CATCACGTCTCATTTTTCTTCGG 58.358 43.478 0.00 0.00 0.00 4.30
576 577 4.084507 GCATCACGTCTCATTTTTCTTCG 58.915 43.478 0.00 0.00 0.00 3.79
577 578 4.083324 TGGCATCACGTCTCATTTTTCTTC 60.083 41.667 0.00 0.00 0.00 2.87
578 579 3.820467 TGGCATCACGTCTCATTTTTCTT 59.180 39.130 0.00 0.00 0.00 2.52
579 580 3.411446 TGGCATCACGTCTCATTTTTCT 58.589 40.909 0.00 0.00 0.00 2.52
580 581 3.829886 TGGCATCACGTCTCATTTTTC 57.170 42.857 0.00 0.00 0.00 2.29
581 582 3.569701 AGTTGGCATCACGTCTCATTTTT 59.430 39.130 0.00 0.00 0.00 1.94
582 583 3.058016 CAGTTGGCATCACGTCTCATTTT 60.058 43.478 0.00 0.00 0.00 1.82
583 584 2.485426 CAGTTGGCATCACGTCTCATTT 59.515 45.455 0.00 0.00 0.00 2.32
584 585 2.079158 CAGTTGGCATCACGTCTCATT 58.921 47.619 0.00 0.00 0.00 2.57
585 586 1.676916 CCAGTTGGCATCACGTCTCAT 60.677 52.381 0.00 0.00 0.00 2.90
586 587 0.320683 CCAGTTGGCATCACGTCTCA 60.321 55.000 0.00 0.00 0.00 3.27
587 588 0.037326 TCCAGTTGGCATCACGTCTC 60.037 55.000 0.00 0.00 34.44 3.36
588 589 0.396435 TTCCAGTTGGCATCACGTCT 59.604 50.000 0.00 0.00 34.44 4.18
589 590 1.453155 ATTCCAGTTGGCATCACGTC 58.547 50.000 0.00 0.00 34.44 4.34
590 591 1.909700 AATTCCAGTTGGCATCACGT 58.090 45.000 0.00 0.00 34.44 4.49
591 592 2.988493 CAAAATTCCAGTTGGCATCACG 59.012 45.455 0.00 0.00 34.44 4.35
592 593 3.993920 ACAAAATTCCAGTTGGCATCAC 58.006 40.909 0.00 0.00 34.44 3.06
593 594 4.686191 AACAAAATTCCAGTTGGCATCA 57.314 36.364 0.00 0.00 34.44 3.07
594 595 4.627035 GCTAACAAAATTCCAGTTGGCATC 59.373 41.667 15.87 0.00 45.39 3.91
595 596 4.568956 GCTAACAAAATTCCAGTTGGCAT 58.431 39.130 15.87 0.00 45.39 4.40
596 597 3.988819 GCTAACAAAATTCCAGTTGGCA 58.011 40.909 15.87 0.00 45.39 4.92
597 598 4.257267 AGCTAACAAAATTCCAGTTGGC 57.743 40.909 14.07 14.07 46.10 4.52
598 599 6.515832 AGAAAGCTAACAAAATTCCAGTTGG 58.484 36.000 0.00 0.00 0.00 3.77
599 600 7.428826 AGAGAAAGCTAACAAAATTCCAGTTG 58.571 34.615 0.00 0.00 0.00 3.16
600 601 7.503902 AGAGAGAAAGCTAACAAAATTCCAGTT 59.496 33.333 0.00 0.00 0.00 3.16
601 602 7.001073 AGAGAGAAAGCTAACAAAATTCCAGT 58.999 34.615 0.00 0.00 0.00 4.00
602 603 7.173907 TGAGAGAGAAAGCTAACAAAATTCCAG 59.826 37.037 0.00 0.00 0.00 3.86
603 604 6.998074 TGAGAGAGAAAGCTAACAAAATTCCA 59.002 34.615 0.00 0.00 0.00 3.53
604 605 7.440523 TGAGAGAGAAAGCTAACAAAATTCC 57.559 36.000 0.00 0.00 0.00 3.01
605 606 9.736023 TTTTGAGAGAGAAAGCTAACAAAATTC 57.264 29.630 0.00 0.00 32.99 2.17
630 631 8.978874 AATGGAAGCTAACAAAATTCCTTTTT 57.021 26.923 4.60 0.00 41.49 1.94
631 632 8.839343 CAAATGGAAGCTAACAAAATTCCTTTT 58.161 29.630 9.58 9.58 43.96 2.27
632 633 7.041167 GCAAATGGAAGCTAACAAAATTCCTTT 60.041 33.333 4.60 2.06 41.49 3.11
633 634 6.427853 GCAAATGGAAGCTAACAAAATTCCTT 59.572 34.615 4.60 0.00 41.49 3.36
634 635 5.934043 GCAAATGGAAGCTAACAAAATTCCT 59.066 36.000 4.60 0.00 41.49 3.36
635 636 5.700373 TGCAAATGGAAGCTAACAAAATTCC 59.300 36.000 0.00 0.00 41.34 3.01
636 637 6.424812 ACTGCAAATGGAAGCTAACAAAATTC 59.575 34.615 0.00 0.00 0.00 2.17
637 638 6.290605 ACTGCAAATGGAAGCTAACAAAATT 58.709 32.000 0.00 0.00 0.00 1.82
638 639 5.857268 ACTGCAAATGGAAGCTAACAAAAT 58.143 33.333 0.00 0.00 0.00 1.82
639 640 5.163468 TGACTGCAAATGGAAGCTAACAAAA 60.163 36.000 0.00 0.00 0.00 2.44
640 641 4.340666 TGACTGCAAATGGAAGCTAACAAA 59.659 37.500 0.00 0.00 0.00 2.83
641 642 3.888323 TGACTGCAAATGGAAGCTAACAA 59.112 39.130 0.00 0.00 0.00 2.83
642 643 3.485394 TGACTGCAAATGGAAGCTAACA 58.515 40.909 0.00 0.00 0.00 2.41
643 644 4.216257 TCTTGACTGCAAATGGAAGCTAAC 59.784 41.667 0.00 0.00 32.73 2.34
644 645 4.397420 TCTTGACTGCAAATGGAAGCTAA 58.603 39.130 0.00 0.00 32.73 3.09
645 646 4.019792 TCTTGACTGCAAATGGAAGCTA 57.980 40.909 0.00 0.00 32.73 3.32
646 647 2.867624 TCTTGACTGCAAATGGAAGCT 58.132 42.857 0.00 0.00 32.73 3.74
647 648 3.648339 TTCTTGACTGCAAATGGAAGC 57.352 42.857 0.00 0.00 32.73 3.86
648 649 5.192327 ACTTTCTTGACTGCAAATGGAAG 57.808 39.130 0.00 0.00 32.73 3.46
649 650 4.644234 TGACTTTCTTGACTGCAAATGGAA 59.356 37.500 0.00 0.00 32.73 3.53
650 651 4.206375 TGACTTTCTTGACTGCAAATGGA 58.794 39.130 0.00 0.00 32.73 3.41
651 652 4.572985 TGACTTTCTTGACTGCAAATGG 57.427 40.909 0.00 0.00 32.73 3.16
652 653 5.824429 TCTTGACTTTCTTGACTGCAAATG 58.176 37.500 0.00 0.00 32.73 2.32
661 662 9.703892 TTTTGAAAACAATCTTGACTTTCTTGA 57.296 25.926 16.03 0.00 36.00 3.02
669 670 9.759259 CCTTTTCTTTTTGAAAACAATCTTGAC 57.241 29.630 0.00 0.00 46.20 3.18
695 696 5.235516 TGTAACAGAGATCCCGAGTTTTTC 58.764 41.667 0.00 0.00 0.00 2.29
765 766 7.863877 GGATACTCTCGTTTCCTCTAGAAAATC 59.136 40.741 0.00 0.00 45.93 2.17
766 767 7.201929 GGGATACTCTCGTTTCCTCTAGAAAAT 60.202 40.741 0.00 0.00 45.93 1.82
832 835 3.618351 TGGGGTTGTTTCACGTTCTAAA 58.382 40.909 0.00 0.00 0.00 1.85
839 842 3.726291 AGATTTTGGGGTTGTTTCACG 57.274 42.857 0.00 0.00 0.00 4.35
931 1012 2.524640 TGGTCGTGGGTGGTGCTA 60.525 61.111 0.00 0.00 0.00 3.49
932 1013 3.941188 CTGGTCGTGGGTGGTGCT 61.941 66.667 0.00 0.00 0.00 4.40
987 1068 4.104183 GCCATTTCCCCGGACGGA 62.104 66.667 13.13 0.00 37.50 4.69
1042 1123 2.546778 GTACGCCAAGATTGATTCGGA 58.453 47.619 0.00 0.00 0.00 4.55
1465 1546 3.074390 GGTGGTTATGATGGATGGATGGA 59.926 47.826 0.00 0.00 0.00 3.41
1491 1572 5.051240 CGGTTAAGATTCCGGTCGAAAATAG 60.051 44.000 0.00 0.00 42.61 1.73
1515 1596 3.753842 GATCGATCGAAGATAGGAGTGC 58.246 50.000 23.50 0.00 45.12 4.40
1537 1618 0.462581 TCGCTGGATCTTGGCACATC 60.463 55.000 0.00 0.00 39.30 3.06
1538 1619 0.182061 ATCGCTGGATCTTGGCACAT 59.818 50.000 0.00 0.00 39.30 3.21
1539 1620 0.462581 GATCGCTGGATCTTGGCACA 60.463 55.000 0.00 0.00 44.66 4.57
1541 1622 4.863707 GATCGCTGGATCTTGGCA 57.136 55.556 0.00 0.00 44.66 4.92
1567 1648 5.039333 GCCAAATCAGGAAGAAAATCGATG 58.961 41.667 0.00 0.00 0.00 3.84
1575 1656 2.165167 CAGCTGCCAAATCAGGAAGAA 58.835 47.619 0.00 0.00 36.29 2.52
1576 1657 1.352017 TCAGCTGCCAAATCAGGAAGA 59.648 47.619 9.47 0.00 36.29 2.87
1580 1661 2.494471 TGAAATCAGCTGCCAAATCAGG 59.506 45.455 9.47 0.00 34.74 3.86
1687 1768 8.896744 GTGATCTGATTTCACCAGAATAATGAA 58.103 33.333 0.00 0.00 43.07 2.57
1713 1794 2.288640 GGGGATTAACATCGTAGACGGG 60.289 54.545 1.67 0.00 42.51 5.28
1716 1797 6.342338 ACATAGGGGATTAACATCGTAGAC 57.658 41.667 0.00 0.00 42.51 2.59
1718 1799 6.990349 ACAAACATAGGGGATTAACATCGTAG 59.010 38.462 0.00 0.00 0.00 3.51
1719 1800 6.764085 CACAAACATAGGGGATTAACATCGTA 59.236 38.462 0.00 0.00 0.00 3.43
1721 1802 5.820423 TCACAAACATAGGGGATTAACATCG 59.180 40.000 0.00 0.00 0.00 3.84
1736 1823 3.259123 GGGAGAAATGCCTTCACAAACAT 59.741 43.478 0.00 0.00 36.40 2.71
1744 1831 3.317430 GTGATGATGGGAGAAATGCCTTC 59.683 47.826 0.00 0.00 0.00 3.46
1931 2031 1.592543 CAATCGTTGCCATCGAATCGA 59.407 47.619 8.12 8.12 40.61 3.59
1932 2032 2.009229 CAATCGTTGCCATCGAATCG 57.991 50.000 1.53 0.00 40.61 3.34
2049 2149 1.613630 ATGAACACCGGCCTCTCCT 60.614 57.895 0.00 0.00 0.00 3.69
2194 2294 1.730501 TGTAGTCCAGGTACTCGTCG 58.269 55.000 0.00 0.00 34.60 5.12
2216 2316 3.766691 CCCCACCACGTACTCCCG 61.767 72.222 0.00 0.00 0.00 5.14
2269 2369 3.050275 GCCAGCGTGTTGTCCCTC 61.050 66.667 0.00 0.00 0.00 4.30
2510 2610 4.261489 CGTATAGGGTACTCATGTGTGGTC 60.261 50.000 10.62 1.74 0.00 4.02
2526 2626 4.321304 CCTGTGGCTATCTGAACGTATAGG 60.321 50.000 5.47 0.00 0.00 2.57
2527 2627 4.799678 CCTGTGGCTATCTGAACGTATAG 58.200 47.826 0.00 0.00 0.00 1.31
2528 2628 3.005472 GCCTGTGGCTATCTGAACGTATA 59.995 47.826 0.73 0.00 46.69 1.47
2530 2630 1.136305 GCCTGTGGCTATCTGAACGTA 59.864 52.381 0.73 0.00 46.69 3.57
2531 2631 0.108138 GCCTGTGGCTATCTGAACGT 60.108 55.000 0.73 0.00 46.69 3.99
2532 2632 2.682893 GCCTGTGGCTATCTGAACG 58.317 57.895 0.73 0.00 46.69 3.95
2549 2649 4.161377 AGAGAGAAACCTATCTGAACCTGC 59.839 45.833 0.00 0.00 31.58 4.85
2635 2766 2.165845 ACGATAAGAGAAACCAGTCCCG 59.834 50.000 0.00 0.00 0.00 5.14
2642 2773 3.000322 CACGATGCACGATAAGAGAAACC 60.000 47.826 14.18 0.00 45.77 3.27
2696 2953 5.657474 TGTTGCTGGTAGCTTATACAGTAC 58.343 41.667 0.00 0.21 42.97 2.73
2701 3063 6.750148 AGATACTGTTGCTGGTAGCTTATAC 58.250 40.000 0.00 0.00 42.97 1.47
2702 3064 6.978674 AGATACTGTTGCTGGTAGCTTATA 57.021 37.500 0.00 0.00 42.97 0.98
2720 3082 4.154918 CACTGAAGAAACCTGGCAAGATAC 59.845 45.833 0.00 0.00 0.00 2.24
2827 3236 6.144402 CGCAAGAAGAATATGCAACTTTTTGT 59.856 34.615 19.55 5.60 40.04 2.83
2900 3320 8.492673 TGTTTGCTAAACTTGTATATGGAGAG 57.507 34.615 11.34 0.00 41.90 3.20
2966 3386 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2988 3408 3.446873 TCCACAAAGTTGCATGTTTCAGT 59.553 39.130 0.00 0.00 0.00 3.41
2989 3409 4.044336 TCCACAAAGTTGCATGTTTCAG 57.956 40.909 0.00 0.00 0.00 3.02
2990 3410 4.099113 TCATCCACAAAGTTGCATGTTTCA 59.901 37.500 0.00 0.00 0.00 2.69
2991 3411 4.619973 TCATCCACAAAGTTGCATGTTTC 58.380 39.130 0.00 0.00 0.00 2.78
2992 3412 4.501915 CCTCATCCACAAAGTTGCATGTTT 60.502 41.667 0.00 0.00 0.00 2.83
3018 3438 5.927954 AAATGCATCCACAAAATGTTGAC 57.072 34.783 1.62 0.00 38.20 3.18
3244 3674 1.080638 TAACTTGGGGCCCTTGATGT 58.919 50.000 25.93 9.15 0.00 3.06
3285 3715 3.782250 GCGCATGATTCACTTACTGAACG 60.782 47.826 0.30 0.00 41.87 3.95
3294 3724 0.182061 ATGAGGGCGCATGATTCACT 59.818 50.000 10.83 0.00 0.00 3.41
3322 3752 4.113815 CTCCAGCCCCCAATGCGA 62.114 66.667 0.00 0.00 0.00 5.10
3325 3755 2.353610 GCAACTCCAGCCCCCAATG 61.354 63.158 0.00 0.00 0.00 2.82
3331 3761 1.454201 GACTAAAGCAACTCCAGCCC 58.546 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.