Multiple sequence alignment - TraesCS2A01G176200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G176200 | chr2A | 100.000 | 6228 | 0 | 0 | 1 | 6228 | 135471834 | 135478061 | 0.000000e+00 | 11502.0 |
1 | TraesCS2A01G176200 | chr2A | 100.000 | 29 | 0 | 0 | 810 | 838 | 135472569 | 135472597 | 3.000000e-03 | 54.7 |
2 | TraesCS2A01G176200 | chr2A | 100.000 | 29 | 0 | 0 | 736 | 764 | 135472643 | 135472671 | 3.000000e-03 | 54.7 |
3 | TraesCS2A01G176200 | chr2D | 94.718 | 3332 | 86 | 34 | 2734 | 6019 | 128455147 | 128458434 | 0.000000e+00 | 5096.0 |
4 | TraesCS2A01G176200 | chr2D | 96.471 | 1190 | 35 | 6 | 1552 | 2738 | 128448833 | 128450018 | 0.000000e+00 | 1958.0 |
5 | TraesCS2A01G176200 | chr2D | 94.937 | 1185 | 53 | 4 | 215 | 1397 | 128447653 | 128448832 | 0.000000e+00 | 1849.0 |
6 | TraesCS2A01G176200 | chr2D | 97.500 | 40 | 1 | 0 | 6166 | 6205 | 128458838 | 128458877 | 1.120000e-07 | 69.4 |
7 | TraesCS2A01G176200 | chr2B | 94.213 | 1538 | 76 | 9 | 1558 | 3091 | 182356901 | 182358429 | 0.000000e+00 | 2335.0 |
8 | TraesCS2A01G176200 | chr2B | 94.240 | 1198 | 60 | 5 | 4829 | 6019 | 182360535 | 182361730 | 0.000000e+00 | 1821.0 |
9 | TraesCS2A01G176200 | chr2B | 97.310 | 632 | 15 | 2 | 3854 | 4484 | 182359566 | 182360196 | 0.000000e+00 | 1072.0 |
10 | TraesCS2A01G176200 | chr2B | 93.935 | 643 | 25 | 5 | 3188 | 3819 | 182358431 | 182359070 | 0.000000e+00 | 959.0 |
11 | TraesCS2A01G176200 | chr2B | 95.315 | 555 | 23 | 1 | 840 | 1391 | 182356343 | 182356897 | 0.000000e+00 | 878.0 |
12 | TraesCS2A01G176200 | chr2B | 95.858 | 338 | 12 | 2 | 4518 | 4855 | 182360198 | 182360533 | 4.250000e-151 | 545.0 |
13 | TraesCS2A01G176200 | chr2B | 94.966 | 298 | 9 | 3 | 506 | 801 | 182356017 | 182355724 | 4.400000e-126 | 462.0 |
14 | TraesCS2A01G176200 | chr2B | 84.615 | 104 | 6 | 6 | 6123 | 6220 | 182362216 | 182362315 | 1.850000e-15 | 95.3 |
15 | TraesCS2A01G176200 | chr2B | 100.000 | 31 | 0 | 0 | 810 | 840 | 182355791 | 182355761 | 2.420000e-04 | 58.4 |
16 | TraesCS2A01G176200 | chr5D | 89.655 | 986 | 71 | 14 | 3879 | 4847 | 548625484 | 548624513 | 0.000000e+00 | 1227.0 |
17 | TraesCS2A01G176200 | chr5D | 90.226 | 931 | 67 | 13 | 1554 | 2478 | 548628766 | 548627854 | 0.000000e+00 | 1194.0 |
18 | TraesCS2A01G176200 | chr5D | 89.692 | 650 | 45 | 7 | 3188 | 3817 | 548626132 | 548625485 | 0.000000e+00 | 809.0 |
19 | TraesCS2A01G176200 | chr5D | 90.574 | 488 | 42 | 4 | 2609 | 3094 | 548626616 | 548626131 | 1.460000e-180 | 643.0 |
20 | TraesCS2A01G176200 | chr5D | 87.164 | 335 | 32 | 6 | 985 | 1310 | 548629238 | 548628906 | 2.740000e-98 | 370.0 |
21 | TraesCS2A01G176200 | chr5D | 81.070 | 243 | 28 | 9 | 5121 | 5351 | 548624028 | 548623792 | 1.780000e-40 | 178.0 |
22 | TraesCS2A01G176200 | chr5D | 83.851 | 161 | 16 | 3 | 4973 | 5123 | 548624232 | 548624072 | 1.810000e-30 | 145.0 |
23 | TraesCS2A01G176200 | chr5D | 93.258 | 89 | 5 | 1 | 3106 | 3193 | 527095744 | 527095656 | 5.070000e-26 | 130.0 |
24 | TraesCS2A01G176200 | chr5B | 91.038 | 703 | 50 | 7 | 3950 | 4640 | 692772874 | 692772173 | 0.000000e+00 | 937.0 |
25 | TraesCS2A01G176200 | chr5B | 91.147 | 497 | 32 | 5 | 1554 | 2048 | 692785130 | 692784644 | 0.000000e+00 | 664.0 |
26 | TraesCS2A01G176200 | chr5B | 90.517 | 464 | 38 | 4 | 2609 | 3070 | 692783754 | 692783295 | 5.340000e-170 | 608.0 |
27 | TraesCS2A01G176200 | chr5B | 90.476 | 441 | 31 | 5 | 2047 | 2478 | 692784562 | 692784124 | 7.000000e-159 | 571.0 |
28 | TraesCS2A01G176200 | chr5B | 88.295 | 393 | 40 | 6 | 3886 | 4274 | 692773259 | 692772869 | 3.400000e-127 | 466.0 |
29 | TraesCS2A01G176200 | chr5B | 89.820 | 334 | 24 | 5 | 985 | 1309 | 692785603 | 692785271 | 2.680000e-113 | 420.0 |
30 | TraesCS2A01G176200 | chr5B | 93.839 | 211 | 13 | 0 | 3497 | 3707 | 692776135 | 692775925 | 1.010000e-82 | 318.0 |
31 | TraesCS2A01G176200 | chr5B | 94.578 | 166 | 8 | 1 | 1394 | 1559 | 129721945 | 129721781 | 8.010000e-64 | 255.0 |
32 | TraesCS2A01G176200 | chr5B | 79.167 | 336 | 33 | 18 | 5139 | 5448 | 692771720 | 692771396 | 1.370000e-46 | 198.0 |
33 | TraesCS2A01G176200 | chr5B | 91.892 | 111 | 7 | 1 | 3707 | 3817 | 692773376 | 692773268 | 3.010000e-33 | 154.0 |
34 | TraesCS2A01G176200 | chr5B | 88.976 | 127 | 9 | 3 | 3379 | 3505 | 692783296 | 692783175 | 1.080000e-32 | 152.0 |
35 | TraesCS2A01G176200 | chr5B | 87.255 | 102 | 11 | 2 | 3093 | 3193 | 663133982 | 663133882 | 1.420000e-21 | 115.0 |
36 | TraesCS2A01G176200 | chr5B | 88.462 | 52 | 6 | 0 | 160 | 211 | 512982546 | 512982495 | 5.210000e-06 | 63.9 |
37 | TraesCS2A01G176200 | chr4A | 86.386 | 617 | 38 | 11 | 3885 | 4496 | 619442110 | 619441535 | 3.170000e-177 | 632.0 |
38 | TraesCS2A01G176200 | chr4A | 86.224 | 617 | 39 | 11 | 3885 | 4496 | 619507172 | 619506597 | 1.470000e-175 | 627.0 |
39 | TraesCS2A01G176200 | chr4A | 86.062 | 617 | 40 | 9 | 3885 | 4496 | 619578522 | 619577947 | 6.860000e-174 | 621.0 |
40 | TraesCS2A01G176200 | chr4A | 86.067 | 567 | 33 | 11 | 3935 | 4496 | 619445926 | 619445401 | 9.060000e-158 | 568.0 |
41 | TraesCS2A01G176200 | chr4A | 84.341 | 364 | 32 | 11 | 4494 | 4855 | 619577854 | 619577514 | 3.600000e-87 | 333.0 |
42 | TraesCS2A01G176200 | chr4A | 84.928 | 345 | 28 | 10 | 4512 | 4855 | 619445289 | 619444968 | 1.670000e-85 | 327.0 |
43 | TraesCS2A01G176200 | chr4A | 82.927 | 246 | 27 | 7 | 5144 | 5379 | 619505380 | 619505140 | 2.280000e-49 | 207.0 |
44 | TraesCS2A01G176200 | chr4A | 82.520 | 246 | 28 | 7 | 5144 | 5379 | 619576825 | 619576585 | 1.060000e-47 | 202.0 |
45 | TraesCS2A01G176200 | chr4A | 82.114 | 246 | 29 | 7 | 5144 | 5379 | 619440657 | 619440417 | 4.930000e-46 | 196.0 |
46 | TraesCS2A01G176200 | chr4A | 83.654 | 208 | 26 | 4 | 4921 | 5120 | 619577099 | 619576892 | 8.240000e-44 | 189.0 |
47 | TraesCS2A01G176200 | chr4A | 83.092 | 207 | 27 | 3 | 4922 | 5120 | 619440930 | 619440724 | 1.380000e-41 | 182.0 |
48 | TraesCS2A01G176200 | chr4A | 83.092 | 207 | 27 | 3 | 4922 | 5120 | 619505653 | 619505447 | 1.380000e-41 | 182.0 |
49 | TraesCS2A01G176200 | chr4A | 89.109 | 101 | 9 | 1 | 4922 | 5020 | 619444860 | 619444760 | 2.360000e-24 | 124.0 |
50 | TraesCS2A01G176200 | chr1D | 96.951 | 164 | 5 | 0 | 1394 | 1557 | 46634616 | 46634453 | 6.150000e-70 | 276.0 |
51 | TraesCS2A01G176200 | chr1D | 94.545 | 165 | 7 | 2 | 1395 | 1559 | 387944782 | 387944944 | 2.880000e-63 | 254.0 |
52 | TraesCS2A01G176200 | chr1D | 88.889 | 99 | 9 | 2 | 3092 | 3189 | 313208373 | 313208276 | 3.050000e-23 | 121.0 |
53 | TraesCS2A01G176200 | chr1D | 86.538 | 104 | 10 | 3 | 3093 | 3194 | 128673594 | 128673695 | 1.840000e-20 | 111.0 |
54 | TraesCS2A01G176200 | chr4D | 95.758 | 165 | 7 | 0 | 1393 | 1557 | 479687423 | 479687259 | 3.700000e-67 | 267.0 |
55 | TraesCS2A01G176200 | chr6B | 94.186 | 172 | 9 | 1 | 1386 | 1556 | 36133494 | 36133665 | 1.720000e-65 | 261.0 |
56 | TraesCS2A01G176200 | chr4B | 95.152 | 165 | 8 | 0 | 1393 | 1557 | 606916926 | 606916762 | 1.720000e-65 | 261.0 |
57 | TraesCS2A01G176200 | chr5A | 95.092 | 163 | 8 | 0 | 1395 | 1557 | 320214405 | 320214243 | 2.230000e-64 | 257.0 |
58 | TraesCS2A01G176200 | chr3D | 95.062 | 162 | 8 | 0 | 1395 | 1556 | 128214007 | 128214168 | 8.010000e-64 | 255.0 |
59 | TraesCS2A01G176200 | chr3D | 91.111 | 180 | 15 | 1 | 1391 | 1569 | 598889897 | 598889718 | 6.240000e-60 | 243.0 |
60 | TraesCS2A01G176200 | chr3B | 92.000 | 175 | 14 | 0 | 1382 | 1556 | 552226394 | 552226568 | 4.820000e-61 | 246.0 |
61 | TraesCS2A01G176200 | chr3A | 92.708 | 96 | 7 | 0 | 3098 | 3193 | 545363211 | 545363306 | 8.420000e-29 | 139.0 |
62 | TraesCS2A01G176200 | chr1B | 87.879 | 99 | 10 | 2 | 3092 | 3189 | 423584100 | 423584003 | 1.420000e-21 | 115.0 |
63 | TraesCS2A01G176200 | chr6D | 85.577 | 104 | 11 | 4 | 3090 | 3191 | 68866246 | 68866145 | 8.540000e-19 | 106.0 |
64 | TraesCS2A01G176200 | chr7B | 84.545 | 110 | 11 | 5 | 3084 | 3190 | 376359542 | 376359648 | 3.070000e-18 | 104.0 |
65 | TraesCS2A01G176200 | chr6A | 88.889 | 54 | 4 | 2 | 3820 | 3872 | 64256801 | 64256853 | 1.450000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G176200 | chr2A | 135471834 | 135478061 | 6227 | False | 11502.000000 | 11502 | 100.000000 | 1 | 6228 | 1 | chr2A.!!$F1 | 6227 |
1 | TraesCS2A01G176200 | chr2D | 128455147 | 128458877 | 3730 | False | 2582.700000 | 5096 | 96.109000 | 2734 | 6205 | 2 | chr2D.!!$F2 | 3471 |
2 | TraesCS2A01G176200 | chr2D | 128447653 | 128450018 | 2365 | False | 1903.500000 | 1958 | 95.704000 | 215 | 2738 | 2 | chr2D.!!$F1 | 2523 |
3 | TraesCS2A01G176200 | chr2B | 182356343 | 182362315 | 5972 | False | 1100.757143 | 2335 | 93.640857 | 840 | 6220 | 7 | chr2B.!!$F1 | 5380 |
4 | TraesCS2A01G176200 | chr5D | 548623792 | 548629238 | 5446 | True | 652.285714 | 1227 | 87.461714 | 985 | 5351 | 7 | chr5D.!!$R2 | 4366 |
5 | TraesCS2A01G176200 | chr5B | 692783175 | 692785603 | 2428 | True | 483.000000 | 664 | 90.187200 | 985 | 3505 | 5 | chr5B.!!$R5 | 2520 |
6 | TraesCS2A01G176200 | chr5B | 692771396 | 692776135 | 4739 | True | 414.600000 | 937 | 88.846200 | 3497 | 5448 | 5 | chr5B.!!$R4 | 1951 |
7 | TraesCS2A01G176200 | chr4A | 619505140 | 619507172 | 2032 | True | 338.666667 | 627 | 84.081000 | 3885 | 5379 | 3 | chr4A.!!$R2 | 1494 |
8 | TraesCS2A01G176200 | chr4A | 619440417 | 619445926 | 5509 | True | 338.166667 | 632 | 85.282667 | 3885 | 5379 | 6 | chr4A.!!$R1 | 1494 |
9 | TraesCS2A01G176200 | chr4A | 619576585 | 619578522 | 1937 | True | 336.250000 | 621 | 84.144250 | 3885 | 5379 | 4 | chr4A.!!$R3 | 1494 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
33 | 34 | 0.035439 | ATGCGTCCCAGGAACGATTT | 60.035 | 50.000 | 0.50 | 0.0 | 0.00 | 2.17 | F |
92 | 93 | 0.107017 | AATGGCCCAATGACGAGGAG | 60.107 | 55.000 | 0.00 | 0.0 | 0.00 | 3.69 | F |
154 | 155 | 0.108520 | CGGGCTGGCTCGTTTACTAA | 60.109 | 55.000 | 6.70 | 0.0 | 34.82 | 2.24 | F |
324 | 326 | 0.320508 | GAAACCCACTGACTCCCGAC | 60.321 | 60.000 | 0.00 | 0.0 | 0.00 | 4.79 | F |
1820 | 1895 | 0.325933 | TGATGGTCCAGCCTGTTGAG | 59.674 | 55.000 | 4.29 | 0.0 | 38.35 | 3.02 | F |
2918 | 4296 | 0.388134 | TGAACGTAAGCGCAGGAGAC | 60.388 | 55.000 | 11.47 | 0.0 | 42.83 | 3.36 | F |
4414 | 9172 | 1.261619 | GCTATCCGTTTGAAGCATCGG | 59.738 | 52.381 | 0.00 | 0.0 | 43.65 | 4.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1342 | 1415 | 0.036105 | CCTGGCCTCAAAATTTGGGC | 60.036 | 55.000 | 21.84 | 21.84 | 45.24 | 5.36 | R |
1433 | 1506 | 2.421725 | TCCGTATGTAGTCCCTAGGGA | 58.578 | 52.381 | 27.73 | 27.73 | 42.90 | 4.20 | R |
1902 | 1977 | 2.568623 | AGCATCAAAACGAAGGACCT | 57.431 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 | R |
2236 | 2404 | 2.686558 | GCAAAATGCAGAAGTCGTGA | 57.313 | 45.000 | 0.00 | 0.00 | 44.26 | 4.35 | R |
3048 | 4426 | 1.275573 | GAAGGCTAGAGGGAAACACGT | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 | R |
4887 | 13211 | 1.512926 | CAGTACCCTGTGAACACTGC | 58.487 | 55.000 | 6.51 | 0.00 | 33.80 | 4.40 | R |
5304 | 14633 | 1.139058 | CTACCCAGAATCCCAGAACGG | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 4.44 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 4.467084 | GCCGATGCGTCCCAGGAA | 62.467 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
28 | 29 | 2.511600 | CCGATGCGTCCCAGGAAC | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
29 | 30 | 2.885644 | CGATGCGTCCCAGGAACG | 60.886 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
30 | 31 | 2.577059 | GATGCGTCCCAGGAACGA | 59.423 | 61.111 | 0.50 | 0.00 | 0.00 | 3.85 |
31 | 32 | 1.144057 | GATGCGTCCCAGGAACGAT | 59.856 | 57.895 | 0.50 | 0.00 | 0.00 | 3.73 |
32 | 33 | 0.462047 | GATGCGTCCCAGGAACGATT | 60.462 | 55.000 | 0.50 | 0.00 | 0.00 | 3.34 |
33 | 34 | 0.035439 | ATGCGTCCCAGGAACGATTT | 60.035 | 50.000 | 0.50 | 0.00 | 0.00 | 2.17 |
34 | 35 | 0.250553 | TGCGTCCCAGGAACGATTTT | 60.251 | 50.000 | 0.50 | 0.00 | 0.00 | 1.82 |
35 | 36 | 0.879090 | GCGTCCCAGGAACGATTTTT | 59.121 | 50.000 | 0.50 | 0.00 | 0.00 | 1.94 |
36 | 37 | 2.078392 | GCGTCCCAGGAACGATTTTTA | 58.922 | 47.619 | 0.50 | 0.00 | 0.00 | 1.52 |
37 | 38 | 2.095372 | GCGTCCCAGGAACGATTTTTAG | 59.905 | 50.000 | 0.50 | 0.00 | 0.00 | 1.85 |
38 | 39 | 2.095372 | CGTCCCAGGAACGATTTTTAGC | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
39 | 40 | 2.095372 | GTCCCAGGAACGATTTTTAGCG | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
40 | 41 | 1.202143 | CCCAGGAACGATTTTTAGCGC | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 5.92 |
41 | 42 | 1.202143 | CCAGGAACGATTTTTAGCGCC | 60.202 | 52.381 | 2.29 | 0.00 | 0.00 | 6.53 |
42 | 43 | 1.737793 | CAGGAACGATTTTTAGCGCCT | 59.262 | 47.619 | 2.29 | 0.00 | 0.00 | 5.52 |
43 | 44 | 2.007608 | AGGAACGATTTTTAGCGCCTC | 58.992 | 47.619 | 2.29 | 0.00 | 0.00 | 4.70 |
44 | 45 | 1.063616 | GGAACGATTTTTAGCGCCTCC | 59.936 | 52.381 | 2.29 | 0.00 | 0.00 | 4.30 |
45 | 46 | 2.007608 | GAACGATTTTTAGCGCCTCCT | 58.992 | 47.619 | 2.29 | 0.00 | 0.00 | 3.69 |
46 | 47 | 1.369625 | ACGATTTTTAGCGCCTCCTG | 58.630 | 50.000 | 2.29 | 0.00 | 0.00 | 3.86 |
47 | 48 | 1.066430 | ACGATTTTTAGCGCCTCCTGA | 60.066 | 47.619 | 2.29 | 0.00 | 0.00 | 3.86 |
48 | 49 | 1.594862 | CGATTTTTAGCGCCTCCTGAG | 59.405 | 52.381 | 2.29 | 0.00 | 0.00 | 3.35 |
57 | 58 | 4.101448 | CCTCCTGAGGGCCCAACG | 62.101 | 72.222 | 27.56 | 11.12 | 44.87 | 4.10 |
58 | 59 | 4.101448 | CTCCTGAGGGCCCAACGG | 62.101 | 72.222 | 27.56 | 21.57 | 0.00 | 4.44 |
68 | 69 | 3.190878 | CCCAACGGCTGAAGATGC | 58.809 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
69 | 70 | 1.377725 | CCCAACGGCTGAAGATGCT | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
70 | 71 | 1.372087 | CCCAACGGCTGAAGATGCTC | 61.372 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
71 | 72 | 0.392193 | CCAACGGCTGAAGATGCTCT | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
72 | 73 | 1.446907 | CAACGGCTGAAGATGCTCTT | 58.553 | 50.000 | 0.00 | 0.00 | 39.87 | 2.85 |
73 | 74 | 2.621338 | CAACGGCTGAAGATGCTCTTA | 58.379 | 47.619 | 0.00 | 0.00 | 36.73 | 2.10 |
74 | 75 | 3.002791 | CAACGGCTGAAGATGCTCTTAA | 58.997 | 45.455 | 0.00 | 0.00 | 36.73 | 1.85 |
75 | 76 | 3.550437 | ACGGCTGAAGATGCTCTTAAT | 57.450 | 42.857 | 0.00 | 0.00 | 36.73 | 1.40 |
76 | 77 | 3.201290 | ACGGCTGAAGATGCTCTTAATG | 58.799 | 45.455 | 0.00 | 0.00 | 36.73 | 1.90 |
77 | 78 | 2.547211 | CGGCTGAAGATGCTCTTAATGG | 59.453 | 50.000 | 0.00 | 0.00 | 36.73 | 3.16 |
78 | 79 | 2.292845 | GGCTGAAGATGCTCTTAATGGC | 59.707 | 50.000 | 0.00 | 0.00 | 36.73 | 4.40 |
79 | 80 | 2.292845 | GCTGAAGATGCTCTTAATGGCC | 59.707 | 50.000 | 0.00 | 0.00 | 36.73 | 5.36 |
80 | 81 | 2.883386 | CTGAAGATGCTCTTAATGGCCC | 59.117 | 50.000 | 0.00 | 0.00 | 36.73 | 5.80 |
81 | 82 | 2.241941 | TGAAGATGCTCTTAATGGCCCA | 59.758 | 45.455 | 0.00 | 0.00 | 36.73 | 5.36 |
82 | 83 | 3.290710 | GAAGATGCTCTTAATGGCCCAA | 58.709 | 45.455 | 0.00 | 0.00 | 36.73 | 4.12 |
83 | 84 | 3.607490 | AGATGCTCTTAATGGCCCAAT | 57.393 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
84 | 85 | 3.228453 | AGATGCTCTTAATGGCCCAATG | 58.772 | 45.455 | 0.00 | 0.00 | 0.00 | 2.82 |
85 | 86 | 2.824689 | TGCTCTTAATGGCCCAATGA | 57.175 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
86 | 87 | 2.378038 | TGCTCTTAATGGCCCAATGAC | 58.622 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
87 | 88 | 1.334869 | GCTCTTAATGGCCCAATGACG | 59.665 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
88 | 89 | 2.917933 | CTCTTAATGGCCCAATGACGA | 58.082 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
89 | 90 | 2.874701 | CTCTTAATGGCCCAATGACGAG | 59.125 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
90 | 91 | 1.949525 | CTTAATGGCCCAATGACGAGG | 59.050 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
91 | 92 | 1.208706 | TAATGGCCCAATGACGAGGA | 58.791 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
92 | 93 | 0.107017 | AATGGCCCAATGACGAGGAG | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
93 | 94 | 2.514824 | GGCCCAATGACGAGGAGC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
94 | 95 | 2.514824 | GCCCAATGACGAGGAGCC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
95 | 96 | 2.202932 | CCCAATGACGAGGAGCCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
96 | 97 | 2.892425 | CCAATGACGAGGAGCCGC | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
97 | 98 | 2.185350 | CAATGACGAGGAGCCGCT | 59.815 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
98 | 99 | 1.880340 | CAATGACGAGGAGCCGCTC | 60.880 | 63.158 | 12.27 | 12.27 | 0.00 | 5.03 |
111 | 112 | 4.293648 | CGCTCCCGTGACCACACA | 62.294 | 66.667 | 0.00 | 0.00 | 46.20 | 3.72 |
112 | 113 | 2.110213 | GCTCCCGTGACCACACAA | 59.890 | 61.111 | 0.00 | 0.00 | 46.20 | 3.33 |
113 | 114 | 2.251642 | GCTCCCGTGACCACACAAC | 61.252 | 63.158 | 0.00 | 0.00 | 46.20 | 3.32 |
114 | 115 | 1.597027 | CTCCCGTGACCACACAACC | 60.597 | 63.158 | 0.00 | 0.00 | 46.20 | 3.77 |
115 | 116 | 2.593436 | CCCGTGACCACACAACCC | 60.593 | 66.667 | 0.00 | 0.00 | 46.20 | 4.11 |
116 | 117 | 2.190843 | CCGTGACCACACAACCCA | 59.809 | 61.111 | 0.00 | 0.00 | 46.20 | 4.51 |
117 | 118 | 1.452289 | CCGTGACCACACAACCCAA | 60.452 | 57.895 | 0.00 | 0.00 | 46.20 | 4.12 |
118 | 119 | 0.821711 | CCGTGACCACACAACCCAAT | 60.822 | 55.000 | 0.00 | 0.00 | 46.20 | 3.16 |
119 | 120 | 0.310543 | CGTGACCACACAACCCAATG | 59.689 | 55.000 | 0.00 | 0.00 | 46.20 | 2.82 |
120 | 121 | 1.398692 | GTGACCACACAACCCAATGT | 58.601 | 50.000 | 0.00 | 0.00 | 45.32 | 2.71 |
128 | 129 | 3.011949 | CACAACCCAATGTGCTACAAC | 57.988 | 47.619 | 0.00 | 0.00 | 43.67 | 3.32 |
129 | 130 | 1.606668 | ACAACCCAATGTGCTACAACG | 59.393 | 47.619 | 0.00 | 0.00 | 30.82 | 4.10 |
130 | 131 | 1.606668 | CAACCCAATGTGCTACAACGT | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
131 | 132 | 1.975660 | ACCCAATGTGCTACAACGTT | 58.024 | 45.000 | 0.00 | 0.00 | 0.00 | 3.99 |
132 | 133 | 1.877443 | ACCCAATGTGCTACAACGTTC | 59.123 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
133 | 134 | 1.199097 | CCCAATGTGCTACAACGTTCC | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
134 | 135 | 1.876799 | CCAATGTGCTACAACGTTCCA | 59.123 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
135 | 136 | 2.350388 | CCAATGTGCTACAACGTTCCAC | 60.350 | 50.000 | 0.00 | 4.47 | 0.00 | 4.02 |
152 | 153 | 2.264794 | CGGGCTGGCTCGTTTACT | 59.735 | 61.111 | 6.70 | 0.00 | 34.82 | 2.24 |
153 | 154 | 1.514087 | CGGGCTGGCTCGTTTACTA | 59.486 | 57.895 | 6.70 | 0.00 | 34.82 | 1.82 |
154 | 155 | 0.108520 | CGGGCTGGCTCGTTTACTAA | 60.109 | 55.000 | 6.70 | 0.00 | 34.82 | 2.24 |
155 | 156 | 1.673626 | CGGGCTGGCTCGTTTACTAAA | 60.674 | 52.381 | 6.70 | 0.00 | 34.82 | 1.85 |
156 | 157 | 2.640184 | GGGCTGGCTCGTTTACTAAAT | 58.360 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
157 | 158 | 2.354821 | GGGCTGGCTCGTTTACTAAATG | 59.645 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
158 | 159 | 3.007635 | GGCTGGCTCGTTTACTAAATGT | 58.992 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
159 | 160 | 3.181510 | GGCTGGCTCGTTTACTAAATGTG | 60.182 | 47.826 | 0.00 | 0.88 | 0.00 | 3.21 |
160 | 161 | 3.727970 | GCTGGCTCGTTTACTAAATGTGC | 60.728 | 47.826 | 15.14 | 15.14 | 42.88 | 4.57 |
162 | 163 | 3.034406 | GCTCGTTTACTAAATGTGCCG | 57.966 | 47.619 | 13.44 | 1.04 | 39.64 | 5.69 |
163 | 164 | 2.786700 | GCTCGTTTACTAAATGTGCCGC | 60.787 | 50.000 | 13.44 | 4.85 | 39.64 | 6.53 |
164 | 165 | 1.390803 | TCGTTTACTAAATGTGCCGCG | 59.609 | 47.619 | 0.00 | 0.00 | 0.00 | 6.46 |
165 | 166 | 1.530856 | GTTTACTAAATGTGCCGCGC | 58.469 | 50.000 | 0.00 | 0.00 | 0.00 | 6.86 |
166 | 167 | 0.448593 | TTTACTAAATGTGCCGCGCC | 59.551 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
167 | 168 | 0.391927 | TTACTAAATGTGCCGCGCCT | 60.392 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
168 | 169 | 1.087202 | TACTAAATGTGCCGCGCCTG | 61.087 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
169 | 170 | 3.112126 | CTAAATGTGCCGCGCCTGG | 62.112 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
183 | 184 | 2.362120 | CTGGGCCAGGAAGCAAGG | 60.362 | 66.667 | 26.34 | 0.00 | 0.00 | 3.61 |
188 | 189 | 2.281761 | CCAGGAAGCAAGGCACGT | 60.282 | 61.111 | 0.00 | 0.00 | 0.00 | 4.49 |
189 | 190 | 2.620112 | CCAGGAAGCAAGGCACGTG | 61.620 | 63.158 | 12.28 | 12.28 | 41.76 | 4.49 |
190 | 191 | 2.281761 | AGGAAGCAAGGCACGTGG | 60.282 | 61.111 | 18.88 | 0.86 | 38.52 | 4.94 |
191 | 192 | 3.365265 | GGAAGCAAGGCACGTGGG | 61.365 | 66.667 | 18.88 | 0.00 | 38.52 | 4.61 |
192 | 193 | 4.043200 | GAAGCAAGGCACGTGGGC | 62.043 | 66.667 | 18.88 | 10.45 | 38.52 | 5.36 |
239 | 240 | 2.008045 | GCACGGCCCGTCTAATAAACA | 61.008 | 52.381 | 5.41 | 0.00 | 38.32 | 2.83 |
243 | 244 | 2.542595 | CGGCCCGTCTAATAAACATGTC | 59.457 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
245 | 246 | 3.808174 | GGCCCGTCTAATAAACATGTCTC | 59.192 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
289 | 291 | 4.792804 | GGCCAGCTCTGCTCCCAC | 62.793 | 72.222 | 0.00 | 0.00 | 36.40 | 4.61 |
290 | 292 | 4.792804 | GCCAGCTCTGCTCCCACC | 62.793 | 72.222 | 0.00 | 0.00 | 36.40 | 4.61 |
291 | 293 | 4.463879 | CCAGCTCTGCTCCCACCG | 62.464 | 72.222 | 0.00 | 0.00 | 36.40 | 4.94 |
324 | 326 | 0.320508 | GAAACCCACTGACTCCCGAC | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
334 | 336 | 2.272797 | CTCCCGACTCCGACTCCT | 59.727 | 66.667 | 0.00 | 0.00 | 38.22 | 3.69 |
594 | 596 | 1.593265 | GGCCAGCCAATTTGAGGTG | 59.407 | 57.895 | 3.12 | 4.34 | 35.81 | 4.00 |
601 | 603 | 2.037641 | AGCCAATTTGAGGTGCCTTTTC | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
605 | 607 | 2.746279 | TTTGAGGTGCCTTTTCTCCA | 57.254 | 45.000 | 0.00 | 0.00 | 0.00 | 3.86 |
704 | 706 | 4.116961 | GTGCTATCTGCCACGTACATTAA | 58.883 | 43.478 | 0.00 | 0.00 | 42.00 | 1.40 |
718 | 720 | 6.788458 | CACGTACATTAACACACACACATAAC | 59.212 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
743 | 745 | 5.781210 | TGCACATAATTTCTTGTGTCCAA | 57.219 | 34.783 | 13.87 | 0.00 | 44.01 | 3.53 |
817 | 819 | 4.902443 | TGTAAATTTTCGCTGTGTCCAA | 57.098 | 36.364 | 0.00 | 0.00 | 0.00 | 3.53 |
824 | 826 | 4.678509 | TTTCGCTGTGTCCAATTATGTC | 57.321 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
983 | 985 | 8.096621 | TGTCATATTTACAAATCCTAGACCCA | 57.903 | 34.615 | 0.00 | 0.00 | 0.00 | 4.51 |
1035 | 1037 | 3.647649 | CTGGTCGATGGCTGTCGCA | 62.648 | 63.158 | 7.78 | 1.88 | 41.22 | 5.10 |
1162 | 1164 | 1.066286 | CCTCCTTGCTCTCAGTCCTTG | 60.066 | 57.143 | 0.00 | 0.00 | 0.00 | 3.61 |
1342 | 1415 | 4.446385 | CACTTCACATTTGCAACAGAATGG | 59.554 | 41.667 | 12.27 | 3.45 | 43.62 | 3.16 |
1367 | 1440 | 4.467438 | CCAAATTTTGAGGCCAGGATAGTT | 59.533 | 41.667 | 5.01 | 0.00 | 0.00 | 2.24 |
1397 | 1470 | 7.146888 | TGGGAGGTGGTATTATTAGGTAGTACT | 60.147 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
1398 | 1471 | 7.395772 | GGGAGGTGGTATTATTAGGTAGTACTC | 59.604 | 44.444 | 0.00 | 0.00 | 0.00 | 2.59 |
1399 | 1472 | 7.395772 | GGAGGTGGTATTATTAGGTAGTACTCC | 59.604 | 44.444 | 0.00 | 0.48 | 0.00 | 3.85 |
1400 | 1473 | 7.244558 | AGGTGGTATTATTAGGTAGTACTCCC | 58.755 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
1401 | 1474 | 7.076045 | AGGTGGTATTATTAGGTAGTACTCCCT | 59.924 | 40.741 | 12.22 | 12.22 | 34.74 | 4.20 |
1402 | 1475 | 7.395772 | GGTGGTATTATTAGGTAGTACTCCCTC | 59.604 | 44.444 | 10.79 | 0.00 | 32.08 | 4.30 |
1403 | 1476 | 7.395772 | GTGGTATTATTAGGTAGTACTCCCTCC | 59.604 | 44.444 | 10.79 | 4.83 | 32.08 | 4.30 |
1404 | 1477 | 7.075397 | TGGTATTATTAGGTAGTACTCCCTCCA | 59.925 | 40.741 | 10.79 | 7.45 | 32.08 | 3.86 |
1405 | 1478 | 8.121185 | GGTATTATTAGGTAGTACTCCCTCCAT | 58.879 | 40.741 | 10.79 | 7.24 | 32.08 | 3.41 |
1406 | 1479 | 9.544579 | GTATTATTAGGTAGTACTCCCTCCATT | 57.455 | 37.037 | 10.79 | 0.00 | 32.08 | 3.16 |
1408 | 1481 | 6.997942 | ATTAGGTAGTACTCCCTCCATTTC | 57.002 | 41.667 | 10.79 | 0.00 | 32.08 | 2.17 |
1409 | 1482 | 4.628661 | AGGTAGTACTCCCTCCATTTCT | 57.371 | 45.455 | 0.11 | 0.00 | 0.00 | 2.52 |
1410 | 1483 | 5.745988 | AGGTAGTACTCCCTCCATTTCTA | 57.254 | 43.478 | 0.11 | 0.00 | 0.00 | 2.10 |
1411 | 1484 | 6.101274 | AGGTAGTACTCCCTCCATTTCTAA | 57.899 | 41.667 | 0.11 | 0.00 | 0.00 | 2.10 |
1412 | 1485 | 6.509386 | AGGTAGTACTCCCTCCATTTCTAAA | 58.491 | 40.000 | 0.11 | 0.00 | 0.00 | 1.85 |
1413 | 1486 | 7.140304 | AGGTAGTACTCCCTCCATTTCTAAAT | 58.860 | 38.462 | 0.11 | 0.00 | 0.00 | 1.40 |
1414 | 1487 | 8.294690 | AGGTAGTACTCCCTCCATTTCTAAATA | 58.705 | 37.037 | 0.11 | 0.00 | 0.00 | 1.40 |
1415 | 1488 | 9.102453 | GGTAGTACTCCCTCCATTTCTAAATAT | 57.898 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
1421 | 1494 | 9.453830 | ACTCCCTCCATTTCTAAATATAAGTCT | 57.546 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
1441 | 1514 | 7.201702 | AGTCTTTTTAGAGATTTCCCTAGGG | 57.798 | 40.000 | 23.22 | 23.22 | 0.00 | 3.53 |
1442 | 1515 | 6.966461 | AGTCTTTTTAGAGATTTCCCTAGGGA | 59.034 | 38.462 | 27.73 | 27.73 | 43.52 | 4.20 |
1443 | 1516 | 7.049133 | GTCTTTTTAGAGATTTCCCTAGGGAC | 58.951 | 42.308 | 31.18 | 19.00 | 45.11 | 4.46 |
1444 | 1517 | 6.966461 | TCTTTTTAGAGATTTCCCTAGGGACT | 59.034 | 38.462 | 31.18 | 23.56 | 45.11 | 3.85 |
1445 | 1518 | 8.127038 | TCTTTTTAGAGATTTCCCTAGGGACTA | 58.873 | 37.037 | 31.18 | 23.06 | 45.11 | 2.59 |
1446 | 1519 | 7.672122 | TTTTAGAGATTTCCCTAGGGACTAC | 57.328 | 40.000 | 31.18 | 21.83 | 45.11 | 2.73 |
1447 | 1520 | 4.901785 | AGAGATTTCCCTAGGGACTACA | 57.098 | 45.455 | 31.18 | 13.37 | 45.11 | 2.74 |
1448 | 1521 | 5.426325 | AGAGATTTCCCTAGGGACTACAT | 57.574 | 43.478 | 31.18 | 18.84 | 45.11 | 2.29 |
1449 | 1522 | 6.547396 | AGAGATTTCCCTAGGGACTACATA | 57.453 | 41.667 | 31.18 | 12.11 | 45.11 | 2.29 |
1450 | 1523 | 6.316513 | AGAGATTTCCCTAGGGACTACATAC | 58.683 | 44.000 | 31.18 | 17.14 | 45.11 | 2.39 |
1451 | 1524 | 5.078256 | AGATTTCCCTAGGGACTACATACG | 58.922 | 45.833 | 31.18 | 0.00 | 45.11 | 3.06 |
1452 | 1525 | 2.965671 | TCCCTAGGGACTACATACGG | 57.034 | 55.000 | 27.73 | 0.00 | 41.75 | 4.02 |
1453 | 1526 | 2.421725 | TCCCTAGGGACTACATACGGA | 58.578 | 52.381 | 27.73 | 0.00 | 41.75 | 4.69 |
1454 | 1527 | 2.991713 | TCCCTAGGGACTACATACGGAT | 59.008 | 50.000 | 27.73 | 0.00 | 41.75 | 4.18 |
1455 | 1528 | 3.090037 | CCCTAGGGACTACATACGGATG | 58.910 | 54.545 | 24.99 | 5.94 | 41.75 | 3.51 |
1456 | 1529 | 3.499926 | CCCTAGGGACTACATACGGATGT | 60.500 | 52.174 | 24.99 | 19.12 | 42.77 | 3.06 |
1457 | 1530 | 4.263639 | CCCTAGGGACTACATACGGATGTA | 60.264 | 50.000 | 24.99 | 19.32 | 41.95 | 2.29 |
1458 | 1531 | 5.507637 | CCTAGGGACTACATACGGATGTAT | 58.492 | 45.833 | 20.64 | 11.04 | 45.42 | 2.29 |
1459 | 1532 | 6.353342 | CCCTAGGGACTACATACGGATGTATA | 60.353 | 46.154 | 24.99 | 9.08 | 41.95 | 1.47 |
1460 | 1533 | 7.288560 | CCTAGGGACTACATACGGATGTATAT | 58.711 | 42.308 | 20.64 | 12.15 | 45.42 | 0.86 |
1461 | 1534 | 8.435187 | CCTAGGGACTACATACGGATGTATATA | 58.565 | 40.741 | 20.64 | 8.62 | 45.42 | 0.86 |
1462 | 1535 | 9.491675 | CTAGGGACTACATACGGATGTATATAG | 57.508 | 40.741 | 20.64 | 13.28 | 45.42 | 1.31 |
1463 | 1536 | 8.098963 | AGGGACTACATACGGATGTATATAGA | 57.901 | 38.462 | 20.64 | 0.00 | 45.42 | 1.98 |
1464 | 1537 | 7.992033 | AGGGACTACATACGGATGTATATAGAC | 59.008 | 40.741 | 20.64 | 10.95 | 45.42 | 2.59 |
1465 | 1538 | 7.772292 | GGGACTACATACGGATGTATATAGACA | 59.228 | 40.741 | 20.64 | 2.07 | 45.42 | 3.41 |
1466 | 1539 | 9.339850 | GGACTACATACGGATGTATATAGACAT | 57.660 | 37.037 | 20.64 | 12.70 | 45.42 | 3.06 |
1497 | 1570 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
1498 | 1571 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
1499 | 1572 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1500 | 1573 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
1501 | 1574 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1502 | 1575 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1503 | 1576 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
1504 | 1577 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
1505 | 1578 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
1506 | 1579 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1507 | 1580 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
1508 | 1581 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1509 | 1582 | 4.439057 | TCATTTTGCTCCGTATGTAGTCC | 58.561 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
1510 | 1583 | 3.965379 | TTTTGCTCCGTATGTAGTCCA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
1511 | 1584 | 4.481368 | TTTTGCTCCGTATGTAGTCCAT | 57.519 | 40.909 | 0.00 | 0.00 | 37.58 | 3.41 |
1512 | 1585 | 5.601583 | TTTTGCTCCGTATGTAGTCCATA | 57.398 | 39.130 | 0.00 | 0.00 | 34.86 | 2.74 |
1513 | 1586 | 5.801531 | TTTGCTCCGTATGTAGTCCATAT | 57.198 | 39.130 | 0.00 | 0.00 | 38.29 | 1.78 |
1514 | 1587 | 5.801531 | TTGCTCCGTATGTAGTCCATATT | 57.198 | 39.130 | 0.00 | 0.00 | 38.29 | 1.28 |
1515 | 1588 | 5.134202 | TGCTCCGTATGTAGTCCATATTG | 57.866 | 43.478 | 0.00 | 0.00 | 38.29 | 1.90 |
1516 | 1589 | 4.021456 | TGCTCCGTATGTAGTCCATATTGG | 60.021 | 45.833 | 0.00 | 0.00 | 38.29 | 3.16 |
1517 | 1590 | 4.219944 | GCTCCGTATGTAGTCCATATTGGA | 59.780 | 45.833 | 0.00 | 0.00 | 45.98 | 3.53 |
1532 | 1605 | 8.337118 | TCCATATTGGAATCTCTAAAAGGACT | 57.663 | 34.615 | 0.00 | 0.00 | 45.00 | 3.85 |
1533 | 1606 | 8.781951 | TCCATATTGGAATCTCTAAAAGGACTT | 58.218 | 33.333 | 0.00 | 0.00 | 45.00 | 3.01 |
1550 | 1623 | 9.907229 | AAAAGGACTTATATTTAGGAACAGAGG | 57.093 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
1791 | 1866 | 8.898761 | TGTAATGTTGATCTGTTAACAGTTTGT | 58.101 | 29.630 | 29.83 | 17.05 | 44.12 | 2.83 |
1820 | 1895 | 0.325933 | TGATGGTCCAGCCTGTTGAG | 59.674 | 55.000 | 4.29 | 0.00 | 38.35 | 3.02 |
1951 | 2026 | 3.436704 | TCATTTCTTTGATGTCGCCACTC | 59.563 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1987 | 2062 | 8.033178 | TCTTCATTTGACCAGATCACCATATA | 57.967 | 34.615 | 0.00 | 0.00 | 36.92 | 0.86 |
2245 | 2413 | 8.071368 | TGTAACCATAAACATTTTCACGACTTC | 58.929 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2256 | 2424 | 1.266718 | TCACGACTTCTGCATTTTGCC | 59.733 | 47.619 | 0.00 | 0.00 | 44.23 | 4.52 |
2401 | 2569 | 4.954875 | AGTTTGAAGTCTCTTGACCTCAG | 58.045 | 43.478 | 0.00 | 0.00 | 42.48 | 3.35 |
2495 | 2741 | 5.526846 | TGAGCTAAATTTGCCTTTTGTTTGG | 59.473 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2529 | 2775 | 7.747690 | TCTACTTATTTTCCCAAGTACCAACA | 58.252 | 34.615 | 0.00 | 0.00 | 36.44 | 3.33 |
2538 | 2784 | 5.450453 | TCCCAAGTACCAACAATCAGAAAA | 58.550 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2540 | 2786 | 5.278957 | CCCAAGTACCAACAATCAGAAAAGG | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2572 | 2827 | 1.067142 | TGATACTTGTGACGGACAGCC | 60.067 | 52.381 | 0.00 | 0.00 | 35.44 | 4.85 |
2918 | 4296 | 0.388134 | TGAACGTAAGCGCAGGAGAC | 60.388 | 55.000 | 11.47 | 0.00 | 42.83 | 3.36 |
2945 | 4323 | 9.099071 | ACTGCTTCTCTAATATATCTGTGGAAT | 57.901 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3178 | 4556 | 3.950397 | TCAGCGACACTTATTTTGGGAT | 58.050 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
3196 | 4574 | 6.742559 | TGGGATGGAAGGAGTATTACTTAC | 57.257 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
3223 | 4601 | 1.761784 | TGTTTGCCTCATTGTTTGGCT | 59.238 | 42.857 | 15.06 | 0.00 | 46.23 | 4.75 |
3303 | 4685 | 3.826157 | CAGACAACCTAGAATTGCCCAAA | 59.174 | 43.478 | 6.61 | 0.00 | 0.00 | 3.28 |
3647 | 5056 | 7.093771 | GGACAATTCTCATGGAAACCAATACTT | 60.094 | 37.037 | 0.00 | 0.00 | 36.95 | 2.24 |
3987 | 8406 | 4.559251 | GCGTACTCTTATCAGCATTATCGG | 59.441 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
4414 | 9172 | 1.261619 | GCTATCCGTTTGAAGCATCGG | 59.738 | 52.381 | 0.00 | 0.00 | 43.65 | 4.18 |
4562 | 9420 | 8.770438 | TTAGTTTTGTTTCATGTTTTGCTCTT | 57.230 | 26.923 | 0.00 | 0.00 | 0.00 | 2.85 |
4841 | 9723 | 3.045634 | CTGGAGGGTCTCTCTCTCTCTA | 58.954 | 54.545 | 0.00 | 0.00 | 42.91 | 2.43 |
4887 | 13211 | 7.518161 | CATGTTGTGTACTGTTACTAACATGG | 58.482 | 38.462 | 23.16 | 15.21 | 45.81 | 3.66 |
5031 | 14279 | 5.940470 | ACTGATTGTTCCTTCAGGTAACATC | 59.060 | 40.000 | 10.04 | 10.01 | 42.93 | 3.06 |
5064 | 14323 | 9.978044 | AGTAGTCGTGTTTCTTAACTTAGAAAT | 57.022 | 29.630 | 0.00 | 0.00 | 43.73 | 2.17 |
5085 | 14344 | 6.445451 | AATCTGAGGGATTGTAGCATGTAT | 57.555 | 37.500 | 0.00 | 0.00 | 42.46 | 2.29 |
5095 | 14354 | 7.600752 | GGGATTGTAGCATGTATAGTTTCTCTC | 59.399 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
5099 | 14358 | 7.708051 | TGTAGCATGTATAGTTTCTCTCACTC | 58.292 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
5304 | 14633 | 0.657368 | CGAACTTGCGACCAGTTTGC | 60.657 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
5473 | 14821 | 4.789807 | CACTGAATTTCTCCATGGATCCT | 58.210 | 43.478 | 16.63 | 0.00 | 0.00 | 3.24 |
5489 | 14837 | 3.067320 | GGATCCTTTGATTACTGCCTTGC | 59.933 | 47.826 | 3.84 | 0.00 | 0.00 | 4.01 |
5519 | 14867 | 4.532834 | TGGTGAAATTTATCCCTGGTAGC | 58.467 | 43.478 | 8.15 | 0.00 | 0.00 | 3.58 |
5522 | 14870 | 4.580580 | GTGAAATTTATCCCTGGTAGCCTG | 59.419 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
5633 | 14983 | 4.625742 | GTCAGTCACACGTTGCAGTATTAT | 59.374 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
5634 | 14984 | 4.862574 | TCAGTCACACGTTGCAGTATTATC | 59.137 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
5651 | 15001 | 8.103305 | CAGTATTATCCCCTATGTACTGCAAAT | 58.897 | 37.037 | 0.00 | 0.00 | 34.33 | 2.32 |
5850 | 15200 | 4.758674 | CGATGATTTTGTCCATATGCTCCT | 59.241 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
5882 | 15232 | 2.096417 | GTGTTACTCGTGTGCCATGTTC | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5883 | 15233 | 2.139917 | GTTACTCGTGTGCCATGTTCA | 58.860 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
5917 | 15268 | 1.130561 | GACGGGTAGCTTGTTTGATGC | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
5932 | 15283 | 2.867624 | TGATGCTGATTTCTATGGGCC | 58.132 | 47.619 | 0.00 | 0.00 | 0.00 | 5.80 |
5960 | 15311 | 6.083098 | CACATTTGGGTCTGTGTTTTATGA | 57.917 | 37.500 | 0.00 | 0.00 | 38.33 | 2.15 |
5999 | 15352 | 2.344950 | GTGATCTTGTGACTCCAGCAG | 58.655 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
6019 | 15372 | 4.494526 | GCAGTTGCATTTGTGTTTTTGAGG | 60.495 | 41.667 | 0.00 | 0.00 | 41.59 | 3.86 |
6022 | 15375 | 4.462508 | TGCATTTGTGTTTTTGAGGTCA | 57.537 | 36.364 | 0.00 | 0.00 | 0.00 | 4.02 |
6023 | 15376 | 4.180057 | TGCATTTGTGTTTTTGAGGTCAC | 58.820 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
6024 | 15377 | 3.555547 | GCATTTGTGTTTTTGAGGTCACC | 59.444 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
6026 | 15379 | 4.448537 | TTTGTGTTTTTGAGGTCACCTG | 57.551 | 40.909 | 0.00 | 0.00 | 31.76 | 4.00 |
6037 | 15431 | 1.187087 | GGTCACCTGCTGTAGCTAGT | 58.813 | 55.000 | 5.38 | 0.00 | 42.66 | 2.57 |
6058 | 15718 | 7.012421 | GCTAGTGTTATCATACCTTTTCCCAAG | 59.988 | 40.741 | 0.00 | 0.00 | 0.00 | 3.61 |
6059 | 15719 | 5.652452 | AGTGTTATCATACCTTTTCCCAAGC | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
6060 | 15720 | 5.417580 | GTGTTATCATACCTTTTCCCAAGCA | 59.582 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
6061 | 15721 | 6.096846 | GTGTTATCATACCTTTTCCCAAGCAT | 59.903 | 38.462 | 0.00 | 0.00 | 0.00 | 3.79 |
6062 | 15722 | 7.284489 | GTGTTATCATACCTTTTCCCAAGCATA | 59.716 | 37.037 | 0.00 | 0.00 | 0.00 | 3.14 |
6063 | 15723 | 8.004215 | TGTTATCATACCTTTTCCCAAGCATAT | 58.996 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
6065 | 15725 | 6.713762 | TCATACCTTTTCCCAAGCATATTG | 57.286 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
6066 | 15726 | 6.430864 | TCATACCTTTTCCCAAGCATATTGA | 58.569 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6067 | 15727 | 7.068702 | TCATACCTTTTCCCAAGCATATTGAT | 58.931 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
6068 | 15728 | 8.224025 | TCATACCTTTTCCCAAGCATATTGATA | 58.776 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
6071 | 15731 | 7.955918 | ACCTTTTCCCAAGCATATTGATATTC | 58.044 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
6072 | 15732 | 7.786464 | ACCTTTTCCCAAGCATATTGATATTCT | 59.214 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
6073 | 15733 | 8.302438 | CCTTTTCCCAAGCATATTGATATTCTC | 58.698 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
6074 | 15734 | 9.075678 | CTTTTCCCAAGCATATTGATATTCTCT | 57.924 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
6076 | 15736 | 9.507329 | TTTCCCAAGCATATTGATATTCTCTAC | 57.493 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
6079 | 15759 | 7.490725 | CCCAAGCATATTGATATTCTCTACTCG | 59.509 | 40.741 | 0.00 | 0.00 | 0.00 | 4.18 |
6083 | 15763 | 9.632807 | AGCATATTGATATTCTCTACTCGTTTC | 57.367 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
6084 | 15764 | 8.579600 | GCATATTGATATTCTCTACTCGTTTCG | 58.420 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
6096 | 15776 | 2.286833 | ACTCGTTTCGTTCCATGTTGTG | 59.713 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
6098 | 15778 | 3.455327 | TCGTTTCGTTCCATGTTGTGTA | 58.545 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
6099 | 15779 | 4.059511 | TCGTTTCGTTCCATGTTGTGTAT | 58.940 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
6100 | 15780 | 4.084276 | TCGTTTCGTTCCATGTTGTGTATG | 60.084 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
6101 | 15781 | 4.319190 | CGTTTCGTTCCATGTTGTGTATGT | 60.319 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
6102 | 15782 | 5.107414 | CGTTTCGTTCCATGTTGTGTATGTA | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6104 | 15784 | 7.201453 | CGTTTCGTTCCATGTTGTGTATGTATA | 60.201 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
6106 | 15786 | 8.725405 | TTCGTTCCATGTTGTGTATGTATATT | 57.275 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
6107 | 15787 | 9.819267 | TTCGTTCCATGTTGTGTATGTATATTA | 57.181 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
6108 | 15788 | 9.471084 | TCGTTCCATGTTGTGTATGTATATTAG | 57.529 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
6154 | 16014 | 9.787435 | AACTAGTTTGGTGTTGTAGATATTGAA | 57.213 | 29.630 | 1.12 | 0.00 | 0.00 | 2.69 |
6205 | 16154 | 3.764237 | AAATGTCACCACCTAACGAGT | 57.236 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
6206 | 16155 | 3.314541 | AATGTCACCACCTAACGAGTC | 57.685 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
6210 | 16159 | 0.456312 | CACCACCTAACGAGTCTCGC | 60.456 | 60.000 | 22.00 | 0.00 | 45.12 | 5.03 |
6211 | 16160 | 0.608582 | ACCACCTAACGAGTCTCGCT | 60.609 | 55.000 | 22.00 | 12.82 | 45.12 | 4.93 |
6219 | 16168 | 4.539881 | GAGTCTCGCTCGACCGGC | 62.540 | 72.222 | 0.00 | 0.00 | 34.46 | 6.13 |
6227 | 16176 | 3.788766 | CTCGACCGGCGGCAAAAG | 61.789 | 66.667 | 28.71 | 14.68 | 41.33 | 2.27 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 4.467084 | TTCCTGGGACGCATCGGC | 62.467 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
11 | 12 | 2.511600 | GTTCCTGGGACGCATCGG | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
12 | 13 | 2.629050 | ATCGTTCCTGGGACGCATCG | 62.629 | 60.000 | 22.70 | 0.00 | 0.00 | 3.84 |
13 | 14 | 0.462047 | AATCGTTCCTGGGACGCATC | 60.462 | 55.000 | 22.70 | 0.00 | 0.00 | 3.91 |
14 | 15 | 0.035439 | AAATCGTTCCTGGGACGCAT | 60.035 | 50.000 | 22.70 | 13.59 | 0.00 | 4.73 |
15 | 16 | 0.250553 | AAAATCGTTCCTGGGACGCA | 60.251 | 50.000 | 22.70 | 11.89 | 0.00 | 5.24 |
16 | 17 | 0.879090 | AAAAATCGTTCCTGGGACGC | 59.121 | 50.000 | 22.70 | 0.00 | 0.00 | 5.19 |
17 | 18 | 2.095372 | GCTAAAAATCGTTCCTGGGACG | 59.905 | 50.000 | 21.56 | 21.56 | 0.00 | 4.79 |
18 | 19 | 2.095372 | CGCTAAAAATCGTTCCTGGGAC | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
19 | 20 | 2.352388 | CGCTAAAAATCGTTCCTGGGA | 58.648 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
20 | 21 | 1.202143 | GCGCTAAAAATCGTTCCTGGG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
21 | 22 | 1.202143 | GGCGCTAAAAATCGTTCCTGG | 60.202 | 52.381 | 7.64 | 0.00 | 0.00 | 4.45 |
22 | 23 | 1.737793 | AGGCGCTAAAAATCGTTCCTG | 59.262 | 47.619 | 7.64 | 0.00 | 0.00 | 3.86 |
23 | 24 | 2.007608 | GAGGCGCTAAAAATCGTTCCT | 58.992 | 47.619 | 7.64 | 0.00 | 0.00 | 3.36 |
24 | 25 | 1.063616 | GGAGGCGCTAAAAATCGTTCC | 59.936 | 52.381 | 7.64 | 0.00 | 0.00 | 3.62 |
25 | 26 | 2.007608 | AGGAGGCGCTAAAAATCGTTC | 58.992 | 47.619 | 7.64 | 0.00 | 0.00 | 3.95 |
26 | 27 | 1.737793 | CAGGAGGCGCTAAAAATCGTT | 59.262 | 47.619 | 7.64 | 0.00 | 0.00 | 3.85 |
27 | 28 | 1.066430 | TCAGGAGGCGCTAAAAATCGT | 60.066 | 47.619 | 7.64 | 0.00 | 0.00 | 3.73 |
28 | 29 | 1.594862 | CTCAGGAGGCGCTAAAAATCG | 59.405 | 52.381 | 7.64 | 0.00 | 0.00 | 3.34 |
29 | 30 | 1.943340 | CCTCAGGAGGCGCTAAAAATC | 59.057 | 52.381 | 7.64 | 0.00 | 42.44 | 2.17 |
30 | 31 | 2.044123 | CCTCAGGAGGCGCTAAAAAT | 57.956 | 50.000 | 7.64 | 0.00 | 42.44 | 1.82 |
31 | 32 | 3.551259 | CCTCAGGAGGCGCTAAAAA | 57.449 | 52.632 | 7.64 | 0.00 | 42.44 | 1.94 |
41 | 42 | 4.101448 | CCGTTGGGCCCTCAGGAG | 62.101 | 72.222 | 25.70 | 8.26 | 33.47 | 3.69 |
51 | 52 | 1.372087 | GAGCATCTTCAGCCGTTGGG | 61.372 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
52 | 53 | 2.093216 | GAGCATCTTCAGCCGTTGG | 58.907 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
64 | 65 | 3.005155 | GTCATTGGGCCATTAAGAGCATC | 59.995 | 47.826 | 7.26 | 0.00 | 0.00 | 3.91 |
65 | 66 | 2.961062 | GTCATTGGGCCATTAAGAGCAT | 59.039 | 45.455 | 7.26 | 0.00 | 0.00 | 3.79 |
66 | 67 | 2.378038 | GTCATTGGGCCATTAAGAGCA | 58.622 | 47.619 | 7.26 | 0.00 | 0.00 | 4.26 |
67 | 68 | 1.334869 | CGTCATTGGGCCATTAAGAGC | 59.665 | 52.381 | 7.26 | 0.00 | 0.00 | 4.09 |
68 | 69 | 2.874701 | CTCGTCATTGGGCCATTAAGAG | 59.125 | 50.000 | 7.26 | 9.29 | 0.00 | 2.85 |
69 | 70 | 2.421388 | CCTCGTCATTGGGCCATTAAGA | 60.421 | 50.000 | 7.26 | 2.87 | 0.00 | 2.10 |
70 | 71 | 1.949525 | CCTCGTCATTGGGCCATTAAG | 59.050 | 52.381 | 7.26 | 0.00 | 0.00 | 1.85 |
71 | 72 | 1.562008 | TCCTCGTCATTGGGCCATTAA | 59.438 | 47.619 | 7.26 | 0.00 | 0.00 | 1.40 |
72 | 73 | 1.140852 | CTCCTCGTCATTGGGCCATTA | 59.859 | 52.381 | 7.26 | 0.00 | 0.00 | 1.90 |
73 | 74 | 0.107017 | CTCCTCGTCATTGGGCCATT | 60.107 | 55.000 | 7.26 | 0.00 | 0.00 | 3.16 |
74 | 75 | 1.528824 | CTCCTCGTCATTGGGCCAT | 59.471 | 57.895 | 7.26 | 0.00 | 0.00 | 4.40 |
75 | 76 | 2.989639 | CTCCTCGTCATTGGGCCA | 59.010 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
76 | 77 | 2.514824 | GCTCCTCGTCATTGGGCC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
77 | 78 | 2.514824 | GGCTCCTCGTCATTGGGC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
78 | 79 | 2.202932 | CGGCTCCTCGTCATTGGG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.12 |
79 | 80 | 2.892425 | GCGGCTCCTCGTCATTGG | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
80 | 81 | 1.880340 | GAGCGGCTCCTCGTCATTG | 60.880 | 63.158 | 19.20 | 0.00 | 0.00 | 2.82 |
81 | 82 | 2.496817 | GAGCGGCTCCTCGTCATT | 59.503 | 61.111 | 19.20 | 0.00 | 0.00 | 2.57 |
82 | 83 | 3.532155 | GGAGCGGCTCCTCGTCAT | 61.532 | 66.667 | 35.90 | 0.00 | 46.41 | 3.06 |
94 | 95 | 3.800685 | TTGTGTGGTCACGGGAGCG | 62.801 | 63.158 | 12.93 | 0.00 | 46.49 | 5.03 |
95 | 96 | 2.110213 | TTGTGTGGTCACGGGAGC | 59.890 | 61.111 | 10.62 | 10.62 | 46.49 | 4.70 |
96 | 97 | 1.597027 | GGTTGTGTGGTCACGGGAG | 60.597 | 63.158 | 0.00 | 0.00 | 46.49 | 4.30 |
97 | 98 | 2.506962 | GGTTGTGTGGTCACGGGA | 59.493 | 61.111 | 0.00 | 0.00 | 46.49 | 5.14 |
98 | 99 | 2.593436 | GGGTTGTGTGGTCACGGG | 60.593 | 66.667 | 0.00 | 0.00 | 46.49 | 5.28 |
99 | 100 | 0.821711 | ATTGGGTTGTGTGGTCACGG | 60.822 | 55.000 | 0.00 | 0.00 | 46.49 | 4.94 |
100 | 101 | 0.310543 | CATTGGGTTGTGTGGTCACG | 59.689 | 55.000 | 0.00 | 0.00 | 46.49 | 4.35 |
101 | 102 | 1.066908 | CACATTGGGTTGTGTGGTCAC | 59.933 | 52.381 | 0.00 | 0.00 | 41.65 | 3.67 |
102 | 103 | 1.397672 | CACATTGGGTTGTGTGGTCA | 58.602 | 50.000 | 0.00 | 0.00 | 41.65 | 4.02 |
103 | 104 | 0.031994 | GCACATTGGGTTGTGTGGTC | 59.968 | 55.000 | 7.50 | 0.00 | 46.93 | 4.02 |
104 | 105 | 2.123409 | GCACATTGGGTTGTGTGGT | 58.877 | 52.632 | 7.50 | 0.00 | 46.93 | 4.16 |
105 | 106 | 1.269448 | GTAGCACATTGGGTTGTGTGG | 59.731 | 52.381 | 7.50 | 0.00 | 46.93 | 4.17 |
106 | 107 | 1.952990 | TGTAGCACATTGGGTTGTGTG | 59.047 | 47.619 | 6.46 | 1.38 | 46.93 | 3.82 |
107 | 108 | 2.356665 | TGTAGCACATTGGGTTGTGT | 57.643 | 45.000 | 6.46 | 0.00 | 46.93 | 3.72 |
109 | 110 | 1.606668 | CGTTGTAGCACATTGGGTTGT | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
110 | 111 | 1.606668 | ACGTTGTAGCACATTGGGTTG | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
111 | 112 | 1.975660 | ACGTTGTAGCACATTGGGTT | 58.024 | 45.000 | 0.00 | 0.00 | 0.00 | 4.11 |
112 | 113 | 1.877443 | GAACGTTGTAGCACATTGGGT | 59.123 | 47.619 | 5.00 | 0.00 | 0.00 | 4.51 |
113 | 114 | 1.199097 | GGAACGTTGTAGCACATTGGG | 59.801 | 52.381 | 5.00 | 0.00 | 0.00 | 4.12 |
114 | 115 | 1.876799 | TGGAACGTTGTAGCACATTGG | 59.123 | 47.619 | 5.00 | 0.00 | 0.00 | 3.16 |
115 | 116 | 2.916111 | GTGGAACGTTGTAGCACATTG | 58.084 | 47.619 | 5.00 | 0.00 | 0.00 | 2.82 |
133 | 134 | 2.047655 | TAAACGAGCCAGCCCGTG | 60.048 | 61.111 | 0.00 | 0.00 | 39.14 | 4.94 |
134 | 135 | 1.252904 | TAGTAAACGAGCCAGCCCGT | 61.253 | 55.000 | 0.00 | 0.00 | 41.14 | 5.28 |
135 | 136 | 0.108520 | TTAGTAAACGAGCCAGCCCG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
136 | 137 | 2.103537 | TTTAGTAAACGAGCCAGCCC | 57.896 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
137 | 138 | 3.007635 | ACATTTAGTAAACGAGCCAGCC | 58.992 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
138 | 139 | 3.727970 | GCACATTTAGTAAACGAGCCAGC | 60.728 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
139 | 140 | 3.181510 | GGCACATTTAGTAAACGAGCCAG | 60.182 | 47.826 | 20.59 | 0.70 | 39.35 | 4.85 |
140 | 141 | 2.745281 | GGCACATTTAGTAAACGAGCCA | 59.255 | 45.455 | 20.59 | 0.00 | 39.35 | 4.75 |
141 | 142 | 2.222953 | CGGCACATTTAGTAAACGAGCC | 60.223 | 50.000 | 17.00 | 17.00 | 36.33 | 4.70 |
142 | 143 | 2.786700 | GCGGCACATTTAGTAAACGAGC | 60.787 | 50.000 | 2.98 | 2.98 | 0.00 | 5.03 |
143 | 144 | 2.534150 | CGCGGCACATTTAGTAAACGAG | 60.534 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
144 | 145 | 1.390803 | CGCGGCACATTTAGTAAACGA | 59.609 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
145 | 146 | 1.793113 | CGCGGCACATTTAGTAAACG | 58.207 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
146 | 147 | 1.530856 | GCGCGGCACATTTAGTAAAC | 58.469 | 50.000 | 8.83 | 0.00 | 0.00 | 2.01 |
147 | 148 | 0.448593 | GGCGCGGCACATTTAGTAAA | 59.551 | 50.000 | 29.32 | 0.00 | 0.00 | 2.01 |
148 | 149 | 0.391927 | AGGCGCGGCACATTTAGTAA | 60.392 | 50.000 | 34.94 | 0.00 | 0.00 | 2.24 |
149 | 150 | 1.087202 | CAGGCGCGGCACATTTAGTA | 61.087 | 55.000 | 34.94 | 0.00 | 0.00 | 1.82 |
150 | 151 | 2.046314 | AGGCGCGGCACATTTAGT | 60.046 | 55.556 | 34.94 | 8.37 | 0.00 | 2.24 |
151 | 152 | 2.404789 | CAGGCGCGGCACATTTAG | 59.595 | 61.111 | 34.94 | 10.86 | 0.00 | 1.85 |
152 | 153 | 3.130819 | CCAGGCGCGGCACATTTA | 61.131 | 61.111 | 34.94 | 0.00 | 0.00 | 1.40 |
166 | 167 | 2.362120 | CCTTGCTTCCTGGCCCAG | 60.362 | 66.667 | 2.91 | 2.91 | 0.00 | 4.45 |
167 | 168 | 4.684134 | GCCTTGCTTCCTGGCCCA | 62.684 | 66.667 | 0.00 | 0.00 | 40.71 | 5.36 |
168 | 169 | 4.684134 | TGCCTTGCTTCCTGGCCC | 62.684 | 66.667 | 0.00 | 0.00 | 45.56 | 5.80 |
169 | 170 | 3.376918 | GTGCCTTGCTTCCTGGCC | 61.377 | 66.667 | 0.00 | 0.00 | 45.56 | 5.36 |
170 | 171 | 3.741476 | CGTGCCTTGCTTCCTGGC | 61.741 | 66.667 | 0.00 | 0.00 | 46.26 | 4.85 |
171 | 172 | 2.281761 | ACGTGCCTTGCTTCCTGG | 60.282 | 61.111 | 0.00 | 0.00 | 0.00 | 4.45 |
172 | 173 | 2.620112 | CCACGTGCCTTGCTTCCTG | 61.620 | 63.158 | 10.91 | 0.00 | 0.00 | 3.86 |
173 | 174 | 2.281761 | CCACGTGCCTTGCTTCCT | 60.282 | 61.111 | 10.91 | 0.00 | 0.00 | 3.36 |
174 | 175 | 3.365265 | CCCACGTGCCTTGCTTCC | 61.365 | 66.667 | 10.91 | 0.00 | 0.00 | 3.46 |
175 | 176 | 4.043200 | GCCCACGTGCCTTGCTTC | 62.043 | 66.667 | 10.91 | 0.00 | 0.00 | 3.86 |
239 | 240 | 2.665000 | CACGGCCCACAGAGACAT | 59.335 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
302 | 304 | 1.353091 | GGGAGTCAGTGGGTTTCTCT | 58.647 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
324 | 326 | 2.912987 | ATCGGGGACAGGAGTCGGAG | 62.913 | 65.000 | 0.00 | 0.00 | 45.92 | 4.63 |
334 | 336 | 1.382695 | GGGAGGAGAATCGGGGACA | 60.383 | 63.158 | 0.00 | 0.00 | 34.37 | 4.02 |
575 | 577 | 1.978617 | ACCTCAAATTGGCTGGCCG | 60.979 | 57.895 | 7.14 | 0.00 | 39.42 | 6.13 |
584 | 586 | 3.575805 | TGGAGAAAAGGCACCTCAAATT | 58.424 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
594 | 596 | 1.827344 | CTTGGGGAATGGAGAAAAGGC | 59.173 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
652 | 654 | 9.557061 | CATAATCCACCTGATAGATAATCCATG | 57.443 | 37.037 | 0.00 | 0.00 | 33.22 | 3.66 |
704 | 706 | 3.441922 | TGTGCAAAGTTATGTGTGTGTGT | 59.558 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
718 | 720 | 6.700960 | TTGGACACAAGAAATTATGTGCAAAG | 59.299 | 34.615 | 15.13 | 0.00 | 46.22 | 2.77 |
782 | 784 | 9.698617 | GCGAAAATTTACATTCTAGTATCGTTT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
784 | 786 | 8.540492 | CAGCGAAAATTTACATTCTAGTATCGT | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
785 | 787 | 8.540492 | ACAGCGAAAATTTACATTCTAGTATCG | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
854 | 856 | 0.764271 | TCACCTGATTGGACACAGCA | 59.236 | 50.000 | 0.00 | 0.00 | 39.71 | 4.41 |
968 | 970 | 2.305927 | CAGTGGTGGGTCTAGGATTTGT | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1041 | 1043 | 2.920912 | AGAACGAGGCGGAACCCA | 60.921 | 61.111 | 0.00 | 0.00 | 40.58 | 4.51 |
1236 | 1247 | 1.375908 | CGCCTGCTTCAGCCAGTAA | 60.376 | 57.895 | 0.00 | 0.00 | 41.18 | 2.24 |
1342 | 1415 | 0.036105 | CCTGGCCTCAAAATTTGGGC | 60.036 | 55.000 | 21.84 | 21.84 | 45.24 | 5.36 |
1367 | 1440 | 2.598288 | ATAATACCACCTCCCACCCA | 57.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
1415 | 1488 | 8.769359 | CCCTAGGGAAATCTCTAAAAAGACTTA | 58.231 | 37.037 | 24.99 | 0.00 | 37.50 | 2.24 |
1416 | 1489 | 7.461363 | TCCCTAGGGAAATCTCTAAAAAGACTT | 59.539 | 37.037 | 29.24 | 0.00 | 42.05 | 3.01 |
1417 | 1490 | 6.966461 | TCCCTAGGGAAATCTCTAAAAAGACT | 59.034 | 38.462 | 29.24 | 0.00 | 42.05 | 3.24 |
1418 | 1491 | 7.196637 | TCCCTAGGGAAATCTCTAAAAAGAC | 57.803 | 40.000 | 29.24 | 0.00 | 42.05 | 3.01 |
1430 | 1503 | 9.787227 | ACATCCGTATGTAGTCCCTAGGGAAAT | 62.787 | 44.444 | 32.73 | 24.62 | 44.41 | 2.17 |
1431 | 1504 | 8.576523 | ACATCCGTATGTAGTCCCTAGGGAAA | 62.577 | 46.154 | 32.73 | 20.33 | 44.41 | 3.13 |
1432 | 1505 | 7.179123 | ACATCCGTATGTAGTCCCTAGGGAA | 62.179 | 48.000 | 32.73 | 17.49 | 44.41 | 3.97 |
1433 | 1506 | 2.421725 | TCCGTATGTAGTCCCTAGGGA | 58.578 | 52.381 | 27.73 | 27.73 | 42.90 | 4.20 |
1434 | 1507 | 2.965671 | TCCGTATGTAGTCCCTAGGG | 57.034 | 55.000 | 23.22 | 23.22 | 0.00 | 3.53 |
1435 | 1508 | 3.764218 | ACATCCGTATGTAGTCCCTAGG | 58.236 | 50.000 | 0.06 | 0.06 | 44.66 | 3.02 |
1475 | 1548 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
1476 | 1549 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1477 | 1550 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1478 | 1551 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
1479 | 1552 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1480 | 1553 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1481 | 1554 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1482 | 1555 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
1483 | 1556 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1484 | 1557 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1485 | 1558 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1486 | 1559 | 4.508124 | GGACTACATACGGAGCAAAATGAG | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
1487 | 1560 | 4.081365 | TGGACTACATACGGAGCAAAATGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1488 | 1561 | 4.188462 | TGGACTACATACGGAGCAAAATG | 58.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
1489 | 1562 | 4.481368 | TGGACTACATACGGAGCAAAAT | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
1490 | 1563 | 3.965379 | TGGACTACATACGGAGCAAAA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
1491 | 1564 | 5.801531 | ATATGGACTACATACGGAGCAAA | 57.198 | 39.130 | 0.00 | 0.00 | 44.41 | 3.68 |
1492 | 1565 | 5.510690 | CCAATATGGACTACATACGGAGCAA | 60.511 | 44.000 | 0.00 | 0.00 | 44.41 | 3.91 |
1493 | 1566 | 4.021456 | CCAATATGGACTACATACGGAGCA | 60.021 | 45.833 | 0.00 | 0.00 | 44.41 | 4.26 |
1494 | 1567 | 4.219944 | TCCAATATGGACTACATACGGAGC | 59.780 | 45.833 | 0.00 | 0.00 | 42.67 | 4.70 |
1495 | 1568 | 5.977489 | TCCAATATGGACTACATACGGAG | 57.023 | 43.478 | 0.00 | 0.00 | 42.67 | 4.63 |
1507 | 1580 | 8.337118 | AGTCCTTTTAGAGATTCCAATATGGA | 57.663 | 34.615 | 0.00 | 0.00 | 46.61 | 3.41 |
1508 | 1581 | 8.986929 | AAGTCCTTTTAGAGATTCCAATATGG | 57.013 | 34.615 | 0.00 | 0.00 | 39.43 | 2.74 |
1524 | 1597 | 9.907229 | CCTCTGTTCCTAAATATAAGTCCTTTT | 57.093 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
1525 | 1598 | 8.495260 | CCCTCTGTTCCTAAATATAAGTCCTTT | 58.505 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
1526 | 1599 | 7.849904 | TCCCTCTGTTCCTAAATATAAGTCCTT | 59.150 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
1527 | 1600 | 7.371043 | TCCCTCTGTTCCTAAATATAAGTCCT | 58.629 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
1528 | 1601 | 7.290481 | ACTCCCTCTGTTCCTAAATATAAGTCC | 59.710 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
1529 | 1602 | 8.252624 | ACTCCCTCTGTTCCTAAATATAAGTC | 57.747 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1530 | 1603 | 9.900112 | ATACTCCCTCTGTTCCTAAATATAAGT | 57.100 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1534 | 1607 | 9.670442 | TGTAATACTCCCTCTGTTCCTAAATAT | 57.330 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
1535 | 1608 | 9.144298 | CTGTAATACTCCCTCTGTTCCTAAATA | 57.856 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1536 | 1609 | 7.844779 | TCTGTAATACTCCCTCTGTTCCTAAAT | 59.155 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1537 | 1610 | 7.186972 | TCTGTAATACTCCCTCTGTTCCTAAA | 58.813 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
1538 | 1611 | 6.738635 | TCTGTAATACTCCCTCTGTTCCTAA | 58.261 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1539 | 1612 | 6.337185 | TCTGTAATACTCCCTCTGTTCCTA | 57.663 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
1540 | 1613 | 5.205056 | CTCTGTAATACTCCCTCTGTTCCT | 58.795 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1541 | 1614 | 4.202172 | GCTCTGTAATACTCCCTCTGTTCC | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1542 | 1615 | 4.402793 | TGCTCTGTAATACTCCCTCTGTTC | 59.597 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
1543 | 1616 | 4.353777 | TGCTCTGTAATACTCCCTCTGTT | 58.646 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1544 | 1617 | 3.982516 | TGCTCTGTAATACTCCCTCTGT | 58.017 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1545 | 1618 | 5.543507 | ATTGCTCTGTAATACTCCCTCTG | 57.456 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
1546 | 1619 | 6.567602 | AAATTGCTCTGTAATACTCCCTCT | 57.432 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
1547 | 1620 | 7.631717 | AAAAATTGCTCTGTAATACTCCCTC | 57.368 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1548 | 1621 | 9.528489 | TTTAAAAATTGCTCTGTAATACTCCCT | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 4.20 |
1791 | 1866 | 4.227300 | AGGCTGGACCATCATTTACAAGTA | 59.773 | 41.667 | 0.00 | 0.00 | 43.14 | 2.24 |
1902 | 1977 | 2.568623 | AGCATCAAAACGAAGGACCT | 57.431 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1951 | 2026 | 5.645067 | TGGTCAAATGAAGAGACATAGCAAG | 59.355 | 40.000 | 0.00 | 0.00 | 34.04 | 4.01 |
2066 | 2224 | 8.520351 | ACTGGTTTAAATGAAAAGTACATAGCC | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 3.93 |
2228 | 2396 | 4.630894 | TGCAGAAGTCGTGAAAATGTTT | 57.369 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
2236 | 2404 | 2.686558 | GCAAAATGCAGAAGTCGTGA | 57.313 | 45.000 | 0.00 | 0.00 | 44.26 | 4.35 |
2256 | 2424 | 5.983118 | TGAGTGTAATATTACATGACTGCCG | 59.017 | 40.000 | 26.70 | 0.00 | 44.59 | 5.69 |
2401 | 2569 | 6.738114 | TCACCAGAATTGTTCACTGATTTTC | 58.262 | 36.000 | 0.00 | 0.00 | 34.07 | 2.29 |
2495 | 2741 | 4.876679 | GGGAAAATAAGTAGAGAGTGGTGC | 59.123 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
2538 | 2784 | 9.313118 | GTCACAAGTATCAAAAATTCAAAACCT | 57.687 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
2540 | 2786 | 8.265998 | CCGTCACAAGTATCAAAAATTCAAAAC | 58.734 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2572 | 2827 | 4.737855 | TCTCTAAGATTTCACTTCCGGG | 57.262 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
2698 | 4074 | 7.884354 | ACATTAAATTCCACAAGGCAAATTCAT | 59.116 | 29.630 | 0.00 | 0.00 | 33.74 | 2.57 |
2699 | 4075 | 7.172875 | CACATTAAATTCCACAAGGCAAATTCA | 59.827 | 33.333 | 0.00 | 0.00 | 33.74 | 2.57 |
2710 | 4086 | 8.768397 | AGAGGACTATACACATTAAATTCCACA | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
2798 | 4175 | 5.171476 | AGAGAGTAATGTTCCATTCACACG | 58.829 | 41.667 | 0.00 | 0.00 | 0.00 | 4.49 |
2918 | 4296 | 7.890515 | TCCACAGATATATTAGAGAAGCAGTG | 58.109 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
2945 | 4323 | 4.042809 | ACACAGGTGATTATTGTCCAAGGA | 59.957 | 41.667 | 6.40 | 0.00 | 0.00 | 3.36 |
3047 | 4425 | 1.349067 | AGGCTAGAGGGAAACACGTT | 58.651 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
3048 | 4426 | 1.275573 | GAAGGCTAGAGGGAAACACGT | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
3178 | 4556 | 8.746530 | CAACTAGTGTAAGTAATACTCCTTCCA | 58.253 | 37.037 | 0.00 | 0.00 | 35.42 | 3.53 |
3196 | 4574 | 4.836125 | ACAATGAGGCAAACAACTAGTG | 57.164 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
3223 | 4601 | 8.593945 | ATTAACTGAGGATTTGCCAAATAGAA | 57.406 | 30.769 | 1.95 | 0.00 | 40.02 | 2.10 |
3273 | 4655 | 6.541641 | GCAATTCTAGGTTGTCTGAAGATCAT | 59.458 | 38.462 | 0.00 | 0.00 | 0.00 | 2.45 |
3353 | 4742 | 6.406849 | GGTGTGTTGCCATAACATATCCAAAT | 60.407 | 38.462 | 0.00 | 0.00 | 32.23 | 2.32 |
3647 | 5056 | 7.336679 | CAGATAAACACCCACAATATGAAGTGA | 59.663 | 37.037 | 0.00 | 0.00 | 37.97 | 3.41 |
3820 | 7778 | 8.378172 | GGAAACCCCTTTCATTAAAAAGAAAG | 57.622 | 34.615 | 15.80 | 15.80 | 46.36 | 2.62 |
3966 | 8385 | 7.916450 | GGATACCGATAATGCTGATAAGAGTAC | 59.084 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
3987 | 8406 | 3.202151 | TGTTGGGGAAATGGAGAGGATAC | 59.798 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
4414 | 9172 | 2.564721 | AAAGGCAAGGAAGCACGGC | 61.565 | 57.895 | 0.00 | 0.00 | 35.83 | 5.68 |
4841 | 9723 | 6.210385 | ACATGTGTGTGTAGAAAGAGAGAGAT | 59.790 | 38.462 | 0.00 | 0.00 | 37.14 | 2.75 |
4887 | 13211 | 1.512926 | CAGTACCCTGTGAACACTGC | 58.487 | 55.000 | 6.51 | 0.00 | 33.80 | 4.40 |
5031 | 14279 | 4.688511 | AGAAACACGACTACTAGCTGAG | 57.311 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
5063 | 14322 | 6.728164 | ACTATACATGCTACAATCCCTCAGAT | 59.272 | 38.462 | 0.00 | 0.00 | 36.48 | 2.90 |
5064 | 14323 | 6.077993 | ACTATACATGCTACAATCCCTCAGA | 58.922 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
5085 | 14344 | 2.217510 | AGGGCGAGTGAGAGAAACTA | 57.782 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5095 | 14354 | 3.009723 | ACATATGTCAAAAGGGCGAGTG | 58.990 | 45.455 | 1.41 | 0.00 | 0.00 | 3.51 |
5304 | 14633 | 1.139058 | CTACCCAGAATCCCAGAACGG | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 4.44 |
5473 | 14821 | 3.153369 | TCAGGCAAGGCAGTAATCAAA | 57.847 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
5489 | 14837 | 6.040166 | CAGGGATAAATTTCACCAAGATCAGG | 59.960 | 42.308 | 13.21 | 0.00 | 0.00 | 3.86 |
5519 | 14867 | 1.199327 | CTGACAAGCTGATTGCACAGG | 59.801 | 52.381 | 18.69 | 6.87 | 45.94 | 4.00 |
5522 | 14870 | 1.242076 | ACCTGACAAGCTGATTGCAC | 58.758 | 50.000 | 5.42 | 1.27 | 45.94 | 4.57 |
5633 | 14983 | 4.853468 | TTGATTTGCAGTACATAGGGGA | 57.147 | 40.909 | 0.00 | 0.00 | 0.00 | 4.81 |
5634 | 14984 | 4.889409 | ACATTGATTTGCAGTACATAGGGG | 59.111 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
5651 | 15001 | 4.582869 | CCAGGAACATCTCTGAACATTGA | 58.417 | 43.478 | 0.00 | 0.00 | 33.11 | 2.57 |
5773 | 15123 | 9.909644 | AGCTCGAATATAACTACAATTAACGAT | 57.090 | 29.630 | 0.00 | 0.00 | 0.00 | 3.73 |
5774 | 15124 | 9.740239 | AAGCTCGAATATAACTACAATTAACGA | 57.260 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
5813 | 15163 | 3.827008 | ATCATCGCATGAGGTTACAGT | 57.173 | 42.857 | 0.00 | 0.00 | 43.53 | 3.55 |
5850 | 15200 | 1.855978 | CGAGTAACACGCACAGAAACA | 59.144 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
5882 | 15232 | 5.448632 | GCTACCCGTCTTTCATTTACCAATG | 60.449 | 44.000 | 0.00 | 0.00 | 41.25 | 2.82 |
5883 | 15233 | 4.638865 | GCTACCCGTCTTTCATTTACCAAT | 59.361 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
5917 | 15268 | 2.213499 | GTGTCGGCCCATAGAAATCAG | 58.787 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
5932 | 15283 | 1.264020 | CACAGACCCAAATGTGTGTCG | 59.736 | 52.381 | 0.00 | 0.00 | 40.39 | 4.35 |
5960 | 15311 | 9.747898 | AAGATCACGGACTAGAGAAGAATATAT | 57.252 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
5970 | 15321 | 3.692101 | AGTCACAAGATCACGGACTAGAG | 59.308 | 47.826 | 0.00 | 0.00 | 37.08 | 2.43 |
5978 | 15331 | 1.337167 | TGCTGGAGTCACAAGATCACG | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
5981 | 15334 | 2.740981 | CAACTGCTGGAGTCACAAGATC | 59.259 | 50.000 | 1.22 | 0.00 | 31.73 | 2.75 |
5999 | 15352 | 4.629200 | TGACCTCAAAAACACAAATGCAAC | 59.371 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
6019 | 15372 | 1.546476 | ACACTAGCTACAGCAGGTGAC | 59.454 | 52.381 | 23.47 | 0.00 | 43.24 | 3.67 |
6022 | 15375 | 4.023980 | TGATAACACTAGCTACAGCAGGT | 58.976 | 43.478 | 3.70 | 0.00 | 45.16 | 4.00 |
6023 | 15376 | 4.655762 | TGATAACACTAGCTACAGCAGG | 57.344 | 45.455 | 3.70 | 0.00 | 45.16 | 4.85 |
6024 | 15377 | 6.015856 | AGGTATGATAACACTAGCTACAGCAG | 60.016 | 42.308 | 3.70 | 2.04 | 45.16 | 4.24 |
6026 | 15379 | 6.334102 | AGGTATGATAACACTAGCTACAGC | 57.666 | 41.667 | 0.00 | 0.00 | 42.49 | 4.40 |
6037 | 15431 | 5.575157 | TGCTTGGGAAAAGGTATGATAACA | 58.425 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
6058 | 15718 | 8.579600 | CGAAACGAGTAGAGAATATCAATATGC | 58.420 | 37.037 | 0.00 | 0.00 | 0.00 | 3.14 |
6059 | 15719 | 9.613957 | ACGAAACGAGTAGAGAATATCAATATG | 57.386 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
6061 | 15721 | 9.661187 | GAACGAAACGAGTAGAGAATATCAATA | 57.339 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
6062 | 15722 | 7.648510 | GGAACGAAACGAGTAGAGAATATCAAT | 59.351 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
6063 | 15723 | 6.971184 | GGAACGAAACGAGTAGAGAATATCAA | 59.029 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
6065 | 15725 | 6.493116 | TGGAACGAAACGAGTAGAGAATATC | 58.507 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
6066 | 15726 | 6.446781 | TGGAACGAAACGAGTAGAGAATAT | 57.553 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
6067 | 15727 | 5.885230 | TGGAACGAAACGAGTAGAGAATA | 57.115 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
6068 | 15728 | 4.778534 | TGGAACGAAACGAGTAGAGAAT | 57.221 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
6071 | 15731 | 3.834610 | ACATGGAACGAAACGAGTAGAG | 58.165 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
6072 | 15732 | 3.928727 | ACATGGAACGAAACGAGTAGA | 57.071 | 42.857 | 0.00 | 0.00 | 0.00 | 2.59 |
6073 | 15733 | 3.739300 | ACAACATGGAACGAAACGAGTAG | 59.261 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
6074 | 15734 | 3.491639 | CACAACATGGAACGAAACGAGTA | 59.508 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
6075 | 15735 | 2.286833 | CACAACATGGAACGAAACGAGT | 59.713 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
6076 | 15736 | 2.286833 | ACACAACATGGAACGAAACGAG | 59.713 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
6079 | 15759 | 5.103290 | ACATACACAACATGGAACGAAAC | 57.897 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
6083 | 15763 | 9.256477 | ACTAATATACATACACAACATGGAACG | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
6132 | 15867 | 8.635765 | ACATTCAATATCTACAACACCAAACT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
6210 | 16159 | 3.788766 | CTTTTGCCGCCGGTCGAG | 61.789 | 66.667 | 17.96 | 10.09 | 41.67 | 4.04 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.