Multiple sequence alignment - TraesCS2A01G176200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G176200 chr2A 100.000 6228 0 0 1 6228 135471834 135478061 0.000000e+00 11502.0
1 TraesCS2A01G176200 chr2A 100.000 29 0 0 810 838 135472569 135472597 3.000000e-03 54.7
2 TraesCS2A01G176200 chr2A 100.000 29 0 0 736 764 135472643 135472671 3.000000e-03 54.7
3 TraesCS2A01G176200 chr2D 94.718 3332 86 34 2734 6019 128455147 128458434 0.000000e+00 5096.0
4 TraesCS2A01G176200 chr2D 96.471 1190 35 6 1552 2738 128448833 128450018 0.000000e+00 1958.0
5 TraesCS2A01G176200 chr2D 94.937 1185 53 4 215 1397 128447653 128448832 0.000000e+00 1849.0
6 TraesCS2A01G176200 chr2D 97.500 40 1 0 6166 6205 128458838 128458877 1.120000e-07 69.4
7 TraesCS2A01G176200 chr2B 94.213 1538 76 9 1558 3091 182356901 182358429 0.000000e+00 2335.0
8 TraesCS2A01G176200 chr2B 94.240 1198 60 5 4829 6019 182360535 182361730 0.000000e+00 1821.0
9 TraesCS2A01G176200 chr2B 97.310 632 15 2 3854 4484 182359566 182360196 0.000000e+00 1072.0
10 TraesCS2A01G176200 chr2B 93.935 643 25 5 3188 3819 182358431 182359070 0.000000e+00 959.0
11 TraesCS2A01G176200 chr2B 95.315 555 23 1 840 1391 182356343 182356897 0.000000e+00 878.0
12 TraesCS2A01G176200 chr2B 95.858 338 12 2 4518 4855 182360198 182360533 4.250000e-151 545.0
13 TraesCS2A01G176200 chr2B 94.966 298 9 3 506 801 182356017 182355724 4.400000e-126 462.0
14 TraesCS2A01G176200 chr2B 84.615 104 6 6 6123 6220 182362216 182362315 1.850000e-15 95.3
15 TraesCS2A01G176200 chr2B 100.000 31 0 0 810 840 182355791 182355761 2.420000e-04 58.4
16 TraesCS2A01G176200 chr5D 89.655 986 71 14 3879 4847 548625484 548624513 0.000000e+00 1227.0
17 TraesCS2A01G176200 chr5D 90.226 931 67 13 1554 2478 548628766 548627854 0.000000e+00 1194.0
18 TraesCS2A01G176200 chr5D 89.692 650 45 7 3188 3817 548626132 548625485 0.000000e+00 809.0
19 TraesCS2A01G176200 chr5D 90.574 488 42 4 2609 3094 548626616 548626131 1.460000e-180 643.0
20 TraesCS2A01G176200 chr5D 87.164 335 32 6 985 1310 548629238 548628906 2.740000e-98 370.0
21 TraesCS2A01G176200 chr5D 81.070 243 28 9 5121 5351 548624028 548623792 1.780000e-40 178.0
22 TraesCS2A01G176200 chr5D 83.851 161 16 3 4973 5123 548624232 548624072 1.810000e-30 145.0
23 TraesCS2A01G176200 chr5D 93.258 89 5 1 3106 3193 527095744 527095656 5.070000e-26 130.0
24 TraesCS2A01G176200 chr5B 91.038 703 50 7 3950 4640 692772874 692772173 0.000000e+00 937.0
25 TraesCS2A01G176200 chr5B 91.147 497 32 5 1554 2048 692785130 692784644 0.000000e+00 664.0
26 TraesCS2A01G176200 chr5B 90.517 464 38 4 2609 3070 692783754 692783295 5.340000e-170 608.0
27 TraesCS2A01G176200 chr5B 90.476 441 31 5 2047 2478 692784562 692784124 7.000000e-159 571.0
28 TraesCS2A01G176200 chr5B 88.295 393 40 6 3886 4274 692773259 692772869 3.400000e-127 466.0
29 TraesCS2A01G176200 chr5B 89.820 334 24 5 985 1309 692785603 692785271 2.680000e-113 420.0
30 TraesCS2A01G176200 chr5B 93.839 211 13 0 3497 3707 692776135 692775925 1.010000e-82 318.0
31 TraesCS2A01G176200 chr5B 94.578 166 8 1 1394 1559 129721945 129721781 8.010000e-64 255.0
32 TraesCS2A01G176200 chr5B 79.167 336 33 18 5139 5448 692771720 692771396 1.370000e-46 198.0
33 TraesCS2A01G176200 chr5B 91.892 111 7 1 3707 3817 692773376 692773268 3.010000e-33 154.0
34 TraesCS2A01G176200 chr5B 88.976 127 9 3 3379 3505 692783296 692783175 1.080000e-32 152.0
35 TraesCS2A01G176200 chr5B 87.255 102 11 2 3093 3193 663133982 663133882 1.420000e-21 115.0
36 TraesCS2A01G176200 chr5B 88.462 52 6 0 160 211 512982546 512982495 5.210000e-06 63.9
37 TraesCS2A01G176200 chr4A 86.386 617 38 11 3885 4496 619442110 619441535 3.170000e-177 632.0
38 TraesCS2A01G176200 chr4A 86.224 617 39 11 3885 4496 619507172 619506597 1.470000e-175 627.0
39 TraesCS2A01G176200 chr4A 86.062 617 40 9 3885 4496 619578522 619577947 6.860000e-174 621.0
40 TraesCS2A01G176200 chr4A 86.067 567 33 11 3935 4496 619445926 619445401 9.060000e-158 568.0
41 TraesCS2A01G176200 chr4A 84.341 364 32 11 4494 4855 619577854 619577514 3.600000e-87 333.0
42 TraesCS2A01G176200 chr4A 84.928 345 28 10 4512 4855 619445289 619444968 1.670000e-85 327.0
43 TraesCS2A01G176200 chr4A 82.927 246 27 7 5144 5379 619505380 619505140 2.280000e-49 207.0
44 TraesCS2A01G176200 chr4A 82.520 246 28 7 5144 5379 619576825 619576585 1.060000e-47 202.0
45 TraesCS2A01G176200 chr4A 82.114 246 29 7 5144 5379 619440657 619440417 4.930000e-46 196.0
46 TraesCS2A01G176200 chr4A 83.654 208 26 4 4921 5120 619577099 619576892 8.240000e-44 189.0
47 TraesCS2A01G176200 chr4A 83.092 207 27 3 4922 5120 619440930 619440724 1.380000e-41 182.0
48 TraesCS2A01G176200 chr4A 83.092 207 27 3 4922 5120 619505653 619505447 1.380000e-41 182.0
49 TraesCS2A01G176200 chr4A 89.109 101 9 1 4922 5020 619444860 619444760 2.360000e-24 124.0
50 TraesCS2A01G176200 chr1D 96.951 164 5 0 1394 1557 46634616 46634453 6.150000e-70 276.0
51 TraesCS2A01G176200 chr1D 94.545 165 7 2 1395 1559 387944782 387944944 2.880000e-63 254.0
52 TraesCS2A01G176200 chr1D 88.889 99 9 2 3092 3189 313208373 313208276 3.050000e-23 121.0
53 TraesCS2A01G176200 chr1D 86.538 104 10 3 3093 3194 128673594 128673695 1.840000e-20 111.0
54 TraesCS2A01G176200 chr4D 95.758 165 7 0 1393 1557 479687423 479687259 3.700000e-67 267.0
55 TraesCS2A01G176200 chr6B 94.186 172 9 1 1386 1556 36133494 36133665 1.720000e-65 261.0
56 TraesCS2A01G176200 chr4B 95.152 165 8 0 1393 1557 606916926 606916762 1.720000e-65 261.0
57 TraesCS2A01G176200 chr5A 95.092 163 8 0 1395 1557 320214405 320214243 2.230000e-64 257.0
58 TraesCS2A01G176200 chr3D 95.062 162 8 0 1395 1556 128214007 128214168 8.010000e-64 255.0
59 TraesCS2A01G176200 chr3D 91.111 180 15 1 1391 1569 598889897 598889718 6.240000e-60 243.0
60 TraesCS2A01G176200 chr3B 92.000 175 14 0 1382 1556 552226394 552226568 4.820000e-61 246.0
61 TraesCS2A01G176200 chr3A 92.708 96 7 0 3098 3193 545363211 545363306 8.420000e-29 139.0
62 TraesCS2A01G176200 chr1B 87.879 99 10 2 3092 3189 423584100 423584003 1.420000e-21 115.0
63 TraesCS2A01G176200 chr6D 85.577 104 11 4 3090 3191 68866246 68866145 8.540000e-19 106.0
64 TraesCS2A01G176200 chr7B 84.545 110 11 5 3084 3190 376359542 376359648 3.070000e-18 104.0
65 TraesCS2A01G176200 chr6A 88.889 54 4 2 3820 3872 64256801 64256853 1.450000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G176200 chr2A 135471834 135478061 6227 False 11502.000000 11502 100.000000 1 6228 1 chr2A.!!$F1 6227
1 TraesCS2A01G176200 chr2D 128455147 128458877 3730 False 2582.700000 5096 96.109000 2734 6205 2 chr2D.!!$F2 3471
2 TraesCS2A01G176200 chr2D 128447653 128450018 2365 False 1903.500000 1958 95.704000 215 2738 2 chr2D.!!$F1 2523
3 TraesCS2A01G176200 chr2B 182356343 182362315 5972 False 1100.757143 2335 93.640857 840 6220 7 chr2B.!!$F1 5380
4 TraesCS2A01G176200 chr5D 548623792 548629238 5446 True 652.285714 1227 87.461714 985 5351 7 chr5D.!!$R2 4366
5 TraesCS2A01G176200 chr5B 692783175 692785603 2428 True 483.000000 664 90.187200 985 3505 5 chr5B.!!$R5 2520
6 TraesCS2A01G176200 chr5B 692771396 692776135 4739 True 414.600000 937 88.846200 3497 5448 5 chr5B.!!$R4 1951
7 TraesCS2A01G176200 chr4A 619505140 619507172 2032 True 338.666667 627 84.081000 3885 5379 3 chr4A.!!$R2 1494
8 TraesCS2A01G176200 chr4A 619440417 619445926 5509 True 338.166667 632 85.282667 3885 5379 6 chr4A.!!$R1 1494
9 TraesCS2A01G176200 chr4A 619576585 619578522 1937 True 336.250000 621 84.144250 3885 5379 4 chr4A.!!$R3 1494


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.035439 ATGCGTCCCAGGAACGATTT 60.035 50.000 0.50 0.0 0.00 2.17 F
92 93 0.107017 AATGGCCCAATGACGAGGAG 60.107 55.000 0.00 0.0 0.00 3.69 F
154 155 0.108520 CGGGCTGGCTCGTTTACTAA 60.109 55.000 6.70 0.0 34.82 2.24 F
324 326 0.320508 GAAACCCACTGACTCCCGAC 60.321 60.000 0.00 0.0 0.00 4.79 F
1820 1895 0.325933 TGATGGTCCAGCCTGTTGAG 59.674 55.000 4.29 0.0 38.35 3.02 F
2918 4296 0.388134 TGAACGTAAGCGCAGGAGAC 60.388 55.000 11.47 0.0 42.83 3.36 F
4414 9172 1.261619 GCTATCCGTTTGAAGCATCGG 59.738 52.381 0.00 0.0 43.65 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1415 0.036105 CCTGGCCTCAAAATTTGGGC 60.036 55.000 21.84 21.84 45.24 5.36 R
1433 1506 2.421725 TCCGTATGTAGTCCCTAGGGA 58.578 52.381 27.73 27.73 42.90 4.20 R
1902 1977 2.568623 AGCATCAAAACGAAGGACCT 57.431 45.000 0.00 0.00 0.00 3.85 R
2236 2404 2.686558 GCAAAATGCAGAAGTCGTGA 57.313 45.000 0.00 0.00 44.26 4.35 R
3048 4426 1.275573 GAAGGCTAGAGGGAAACACGT 59.724 52.381 0.00 0.00 0.00 4.49 R
4887 13211 1.512926 CAGTACCCTGTGAACACTGC 58.487 55.000 6.51 0.00 33.80 4.40 R
5304 14633 1.139058 CTACCCAGAATCCCAGAACGG 59.861 57.143 0.00 0.00 0.00 4.44 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.467084 GCCGATGCGTCCCAGGAA 62.467 66.667 0.00 0.00 0.00 3.36
28 29 2.511600 CCGATGCGTCCCAGGAAC 60.512 66.667 0.00 0.00 0.00 3.62
29 30 2.885644 CGATGCGTCCCAGGAACG 60.886 66.667 0.00 0.00 0.00 3.95
30 31 2.577059 GATGCGTCCCAGGAACGA 59.423 61.111 0.50 0.00 0.00 3.85
31 32 1.144057 GATGCGTCCCAGGAACGAT 59.856 57.895 0.50 0.00 0.00 3.73
32 33 0.462047 GATGCGTCCCAGGAACGATT 60.462 55.000 0.50 0.00 0.00 3.34
33 34 0.035439 ATGCGTCCCAGGAACGATTT 60.035 50.000 0.50 0.00 0.00 2.17
34 35 0.250553 TGCGTCCCAGGAACGATTTT 60.251 50.000 0.50 0.00 0.00 1.82
35 36 0.879090 GCGTCCCAGGAACGATTTTT 59.121 50.000 0.50 0.00 0.00 1.94
36 37 2.078392 GCGTCCCAGGAACGATTTTTA 58.922 47.619 0.50 0.00 0.00 1.52
37 38 2.095372 GCGTCCCAGGAACGATTTTTAG 59.905 50.000 0.50 0.00 0.00 1.85
38 39 2.095372 CGTCCCAGGAACGATTTTTAGC 59.905 50.000 0.00 0.00 0.00 3.09
39 40 2.095372 GTCCCAGGAACGATTTTTAGCG 59.905 50.000 0.00 0.00 0.00 4.26
40 41 1.202143 CCCAGGAACGATTTTTAGCGC 60.202 52.381 0.00 0.00 0.00 5.92
41 42 1.202143 CCAGGAACGATTTTTAGCGCC 60.202 52.381 2.29 0.00 0.00 6.53
42 43 1.737793 CAGGAACGATTTTTAGCGCCT 59.262 47.619 2.29 0.00 0.00 5.52
43 44 2.007608 AGGAACGATTTTTAGCGCCTC 58.992 47.619 2.29 0.00 0.00 4.70
44 45 1.063616 GGAACGATTTTTAGCGCCTCC 59.936 52.381 2.29 0.00 0.00 4.30
45 46 2.007608 GAACGATTTTTAGCGCCTCCT 58.992 47.619 2.29 0.00 0.00 3.69
46 47 1.369625 ACGATTTTTAGCGCCTCCTG 58.630 50.000 2.29 0.00 0.00 3.86
47 48 1.066430 ACGATTTTTAGCGCCTCCTGA 60.066 47.619 2.29 0.00 0.00 3.86
48 49 1.594862 CGATTTTTAGCGCCTCCTGAG 59.405 52.381 2.29 0.00 0.00 3.35
57 58 4.101448 CCTCCTGAGGGCCCAACG 62.101 72.222 27.56 11.12 44.87 4.10
58 59 4.101448 CTCCTGAGGGCCCAACGG 62.101 72.222 27.56 21.57 0.00 4.44
68 69 3.190878 CCCAACGGCTGAAGATGC 58.809 61.111 0.00 0.00 0.00 3.91
69 70 1.377725 CCCAACGGCTGAAGATGCT 60.378 57.895 0.00 0.00 0.00 3.79
70 71 1.372087 CCCAACGGCTGAAGATGCTC 61.372 60.000 0.00 0.00 0.00 4.26
71 72 0.392193 CCAACGGCTGAAGATGCTCT 60.392 55.000 0.00 0.00 0.00 4.09
72 73 1.446907 CAACGGCTGAAGATGCTCTT 58.553 50.000 0.00 0.00 39.87 2.85
73 74 2.621338 CAACGGCTGAAGATGCTCTTA 58.379 47.619 0.00 0.00 36.73 2.10
74 75 3.002791 CAACGGCTGAAGATGCTCTTAA 58.997 45.455 0.00 0.00 36.73 1.85
75 76 3.550437 ACGGCTGAAGATGCTCTTAAT 57.450 42.857 0.00 0.00 36.73 1.40
76 77 3.201290 ACGGCTGAAGATGCTCTTAATG 58.799 45.455 0.00 0.00 36.73 1.90
77 78 2.547211 CGGCTGAAGATGCTCTTAATGG 59.453 50.000 0.00 0.00 36.73 3.16
78 79 2.292845 GGCTGAAGATGCTCTTAATGGC 59.707 50.000 0.00 0.00 36.73 4.40
79 80 2.292845 GCTGAAGATGCTCTTAATGGCC 59.707 50.000 0.00 0.00 36.73 5.36
80 81 2.883386 CTGAAGATGCTCTTAATGGCCC 59.117 50.000 0.00 0.00 36.73 5.80
81 82 2.241941 TGAAGATGCTCTTAATGGCCCA 59.758 45.455 0.00 0.00 36.73 5.36
82 83 3.290710 GAAGATGCTCTTAATGGCCCAA 58.709 45.455 0.00 0.00 36.73 4.12
83 84 3.607490 AGATGCTCTTAATGGCCCAAT 57.393 42.857 0.00 0.00 0.00 3.16
84 85 3.228453 AGATGCTCTTAATGGCCCAATG 58.772 45.455 0.00 0.00 0.00 2.82
85 86 2.824689 TGCTCTTAATGGCCCAATGA 57.175 45.000 0.00 0.00 0.00 2.57
86 87 2.378038 TGCTCTTAATGGCCCAATGAC 58.622 47.619 0.00 0.00 0.00 3.06
87 88 1.334869 GCTCTTAATGGCCCAATGACG 59.665 52.381 0.00 0.00 0.00 4.35
88 89 2.917933 CTCTTAATGGCCCAATGACGA 58.082 47.619 0.00 0.00 0.00 4.20
89 90 2.874701 CTCTTAATGGCCCAATGACGAG 59.125 50.000 0.00 0.00 0.00 4.18
90 91 1.949525 CTTAATGGCCCAATGACGAGG 59.050 52.381 0.00 0.00 0.00 4.63
91 92 1.208706 TAATGGCCCAATGACGAGGA 58.791 50.000 0.00 0.00 0.00 3.71
92 93 0.107017 AATGGCCCAATGACGAGGAG 60.107 55.000 0.00 0.00 0.00 3.69
93 94 2.514824 GGCCCAATGACGAGGAGC 60.515 66.667 0.00 0.00 0.00 4.70
94 95 2.514824 GCCCAATGACGAGGAGCC 60.515 66.667 0.00 0.00 0.00 4.70
95 96 2.202932 CCCAATGACGAGGAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
96 97 2.892425 CCAATGACGAGGAGCCGC 60.892 66.667 0.00 0.00 0.00 6.53
97 98 2.185350 CAATGACGAGGAGCCGCT 59.815 61.111 0.00 0.00 0.00 5.52
98 99 1.880340 CAATGACGAGGAGCCGCTC 60.880 63.158 12.27 12.27 0.00 5.03
111 112 4.293648 CGCTCCCGTGACCACACA 62.294 66.667 0.00 0.00 46.20 3.72
112 113 2.110213 GCTCCCGTGACCACACAA 59.890 61.111 0.00 0.00 46.20 3.33
113 114 2.251642 GCTCCCGTGACCACACAAC 61.252 63.158 0.00 0.00 46.20 3.32
114 115 1.597027 CTCCCGTGACCACACAACC 60.597 63.158 0.00 0.00 46.20 3.77
115 116 2.593436 CCCGTGACCACACAACCC 60.593 66.667 0.00 0.00 46.20 4.11
116 117 2.190843 CCGTGACCACACAACCCA 59.809 61.111 0.00 0.00 46.20 4.51
117 118 1.452289 CCGTGACCACACAACCCAA 60.452 57.895 0.00 0.00 46.20 4.12
118 119 0.821711 CCGTGACCACACAACCCAAT 60.822 55.000 0.00 0.00 46.20 3.16
119 120 0.310543 CGTGACCACACAACCCAATG 59.689 55.000 0.00 0.00 46.20 2.82
120 121 1.398692 GTGACCACACAACCCAATGT 58.601 50.000 0.00 0.00 45.32 2.71
128 129 3.011949 CACAACCCAATGTGCTACAAC 57.988 47.619 0.00 0.00 43.67 3.32
129 130 1.606668 ACAACCCAATGTGCTACAACG 59.393 47.619 0.00 0.00 30.82 4.10
130 131 1.606668 CAACCCAATGTGCTACAACGT 59.393 47.619 0.00 0.00 0.00 3.99
131 132 1.975660 ACCCAATGTGCTACAACGTT 58.024 45.000 0.00 0.00 0.00 3.99
132 133 1.877443 ACCCAATGTGCTACAACGTTC 59.123 47.619 0.00 0.00 0.00 3.95
133 134 1.199097 CCCAATGTGCTACAACGTTCC 59.801 52.381 0.00 0.00 0.00 3.62
134 135 1.876799 CCAATGTGCTACAACGTTCCA 59.123 47.619 0.00 0.00 0.00 3.53
135 136 2.350388 CCAATGTGCTACAACGTTCCAC 60.350 50.000 0.00 4.47 0.00 4.02
152 153 2.264794 CGGGCTGGCTCGTTTACT 59.735 61.111 6.70 0.00 34.82 2.24
153 154 1.514087 CGGGCTGGCTCGTTTACTA 59.486 57.895 6.70 0.00 34.82 1.82
154 155 0.108520 CGGGCTGGCTCGTTTACTAA 60.109 55.000 6.70 0.00 34.82 2.24
155 156 1.673626 CGGGCTGGCTCGTTTACTAAA 60.674 52.381 6.70 0.00 34.82 1.85
156 157 2.640184 GGGCTGGCTCGTTTACTAAAT 58.360 47.619 0.00 0.00 0.00 1.40
157 158 2.354821 GGGCTGGCTCGTTTACTAAATG 59.645 50.000 0.00 0.00 0.00 2.32
158 159 3.007635 GGCTGGCTCGTTTACTAAATGT 58.992 45.455 0.00 0.00 0.00 2.71
159 160 3.181510 GGCTGGCTCGTTTACTAAATGTG 60.182 47.826 0.00 0.88 0.00 3.21
160 161 3.727970 GCTGGCTCGTTTACTAAATGTGC 60.728 47.826 15.14 15.14 42.88 4.57
162 163 3.034406 GCTCGTTTACTAAATGTGCCG 57.966 47.619 13.44 1.04 39.64 5.69
163 164 2.786700 GCTCGTTTACTAAATGTGCCGC 60.787 50.000 13.44 4.85 39.64 6.53
164 165 1.390803 TCGTTTACTAAATGTGCCGCG 59.609 47.619 0.00 0.00 0.00 6.46
165 166 1.530856 GTTTACTAAATGTGCCGCGC 58.469 50.000 0.00 0.00 0.00 6.86
166 167 0.448593 TTTACTAAATGTGCCGCGCC 59.551 50.000 0.00 0.00 0.00 6.53
167 168 0.391927 TTACTAAATGTGCCGCGCCT 60.392 50.000 0.00 0.00 0.00 5.52
168 169 1.087202 TACTAAATGTGCCGCGCCTG 61.087 55.000 0.00 0.00 0.00 4.85
169 170 3.112126 CTAAATGTGCCGCGCCTGG 62.112 63.158 0.00 0.00 0.00 4.45
183 184 2.362120 CTGGGCCAGGAAGCAAGG 60.362 66.667 26.34 0.00 0.00 3.61
188 189 2.281761 CCAGGAAGCAAGGCACGT 60.282 61.111 0.00 0.00 0.00 4.49
189 190 2.620112 CCAGGAAGCAAGGCACGTG 61.620 63.158 12.28 12.28 41.76 4.49
190 191 2.281761 AGGAAGCAAGGCACGTGG 60.282 61.111 18.88 0.86 38.52 4.94
191 192 3.365265 GGAAGCAAGGCACGTGGG 61.365 66.667 18.88 0.00 38.52 4.61
192 193 4.043200 GAAGCAAGGCACGTGGGC 62.043 66.667 18.88 10.45 38.52 5.36
239 240 2.008045 GCACGGCCCGTCTAATAAACA 61.008 52.381 5.41 0.00 38.32 2.83
243 244 2.542595 CGGCCCGTCTAATAAACATGTC 59.457 50.000 0.00 0.00 0.00 3.06
245 246 3.808174 GGCCCGTCTAATAAACATGTCTC 59.192 47.826 0.00 0.00 0.00 3.36
289 291 4.792804 GGCCAGCTCTGCTCCCAC 62.793 72.222 0.00 0.00 36.40 4.61
290 292 4.792804 GCCAGCTCTGCTCCCACC 62.793 72.222 0.00 0.00 36.40 4.61
291 293 4.463879 CCAGCTCTGCTCCCACCG 62.464 72.222 0.00 0.00 36.40 4.94
324 326 0.320508 GAAACCCACTGACTCCCGAC 60.321 60.000 0.00 0.00 0.00 4.79
334 336 2.272797 CTCCCGACTCCGACTCCT 59.727 66.667 0.00 0.00 38.22 3.69
594 596 1.593265 GGCCAGCCAATTTGAGGTG 59.407 57.895 3.12 4.34 35.81 4.00
601 603 2.037641 AGCCAATTTGAGGTGCCTTTTC 59.962 45.455 0.00 0.00 0.00 2.29
605 607 2.746279 TTTGAGGTGCCTTTTCTCCA 57.254 45.000 0.00 0.00 0.00 3.86
704 706 4.116961 GTGCTATCTGCCACGTACATTAA 58.883 43.478 0.00 0.00 42.00 1.40
718 720 6.788458 CACGTACATTAACACACACACATAAC 59.212 38.462 0.00 0.00 0.00 1.89
743 745 5.781210 TGCACATAATTTCTTGTGTCCAA 57.219 34.783 13.87 0.00 44.01 3.53
817 819 4.902443 TGTAAATTTTCGCTGTGTCCAA 57.098 36.364 0.00 0.00 0.00 3.53
824 826 4.678509 TTTCGCTGTGTCCAATTATGTC 57.321 40.909 0.00 0.00 0.00 3.06
983 985 8.096621 TGTCATATTTACAAATCCTAGACCCA 57.903 34.615 0.00 0.00 0.00 4.51
1035 1037 3.647649 CTGGTCGATGGCTGTCGCA 62.648 63.158 7.78 1.88 41.22 5.10
1162 1164 1.066286 CCTCCTTGCTCTCAGTCCTTG 60.066 57.143 0.00 0.00 0.00 3.61
1342 1415 4.446385 CACTTCACATTTGCAACAGAATGG 59.554 41.667 12.27 3.45 43.62 3.16
1367 1440 4.467438 CCAAATTTTGAGGCCAGGATAGTT 59.533 41.667 5.01 0.00 0.00 2.24
1397 1470 7.146888 TGGGAGGTGGTATTATTAGGTAGTACT 60.147 40.741 0.00 0.00 0.00 2.73
1398 1471 7.395772 GGGAGGTGGTATTATTAGGTAGTACTC 59.604 44.444 0.00 0.00 0.00 2.59
1399 1472 7.395772 GGAGGTGGTATTATTAGGTAGTACTCC 59.604 44.444 0.00 0.48 0.00 3.85
1400 1473 7.244558 AGGTGGTATTATTAGGTAGTACTCCC 58.755 42.308 0.00 0.00 0.00 4.30
1401 1474 7.076045 AGGTGGTATTATTAGGTAGTACTCCCT 59.924 40.741 12.22 12.22 34.74 4.20
1402 1475 7.395772 GGTGGTATTATTAGGTAGTACTCCCTC 59.604 44.444 10.79 0.00 32.08 4.30
1403 1476 7.395772 GTGGTATTATTAGGTAGTACTCCCTCC 59.604 44.444 10.79 4.83 32.08 4.30
1404 1477 7.075397 TGGTATTATTAGGTAGTACTCCCTCCA 59.925 40.741 10.79 7.45 32.08 3.86
1405 1478 8.121185 GGTATTATTAGGTAGTACTCCCTCCAT 58.879 40.741 10.79 7.24 32.08 3.41
1406 1479 9.544579 GTATTATTAGGTAGTACTCCCTCCATT 57.455 37.037 10.79 0.00 32.08 3.16
1408 1481 6.997942 ATTAGGTAGTACTCCCTCCATTTC 57.002 41.667 10.79 0.00 32.08 2.17
1409 1482 4.628661 AGGTAGTACTCCCTCCATTTCT 57.371 45.455 0.11 0.00 0.00 2.52
1410 1483 5.745988 AGGTAGTACTCCCTCCATTTCTA 57.254 43.478 0.11 0.00 0.00 2.10
1411 1484 6.101274 AGGTAGTACTCCCTCCATTTCTAA 57.899 41.667 0.11 0.00 0.00 2.10
1412 1485 6.509386 AGGTAGTACTCCCTCCATTTCTAAA 58.491 40.000 0.11 0.00 0.00 1.85
1413 1486 7.140304 AGGTAGTACTCCCTCCATTTCTAAAT 58.860 38.462 0.11 0.00 0.00 1.40
1414 1487 8.294690 AGGTAGTACTCCCTCCATTTCTAAATA 58.705 37.037 0.11 0.00 0.00 1.40
1415 1488 9.102453 GGTAGTACTCCCTCCATTTCTAAATAT 57.898 37.037 0.00 0.00 0.00 1.28
1421 1494 9.453830 ACTCCCTCCATTTCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
1441 1514 7.201702 AGTCTTTTTAGAGATTTCCCTAGGG 57.798 40.000 23.22 23.22 0.00 3.53
1442 1515 6.966461 AGTCTTTTTAGAGATTTCCCTAGGGA 59.034 38.462 27.73 27.73 43.52 4.20
1443 1516 7.049133 GTCTTTTTAGAGATTTCCCTAGGGAC 58.951 42.308 31.18 19.00 45.11 4.46
1444 1517 6.966461 TCTTTTTAGAGATTTCCCTAGGGACT 59.034 38.462 31.18 23.56 45.11 3.85
1445 1518 8.127038 TCTTTTTAGAGATTTCCCTAGGGACTA 58.873 37.037 31.18 23.06 45.11 2.59
1446 1519 7.672122 TTTTAGAGATTTCCCTAGGGACTAC 57.328 40.000 31.18 21.83 45.11 2.73
1447 1520 4.901785 AGAGATTTCCCTAGGGACTACA 57.098 45.455 31.18 13.37 45.11 2.74
1448 1521 5.426325 AGAGATTTCCCTAGGGACTACAT 57.574 43.478 31.18 18.84 45.11 2.29
1449 1522 6.547396 AGAGATTTCCCTAGGGACTACATA 57.453 41.667 31.18 12.11 45.11 2.29
1450 1523 6.316513 AGAGATTTCCCTAGGGACTACATAC 58.683 44.000 31.18 17.14 45.11 2.39
1451 1524 5.078256 AGATTTCCCTAGGGACTACATACG 58.922 45.833 31.18 0.00 45.11 3.06
1452 1525 2.965671 TCCCTAGGGACTACATACGG 57.034 55.000 27.73 0.00 41.75 4.02
1453 1526 2.421725 TCCCTAGGGACTACATACGGA 58.578 52.381 27.73 0.00 41.75 4.69
1454 1527 2.991713 TCCCTAGGGACTACATACGGAT 59.008 50.000 27.73 0.00 41.75 4.18
1455 1528 3.090037 CCCTAGGGACTACATACGGATG 58.910 54.545 24.99 5.94 41.75 3.51
1456 1529 3.499926 CCCTAGGGACTACATACGGATGT 60.500 52.174 24.99 19.12 42.77 3.06
1457 1530 4.263639 CCCTAGGGACTACATACGGATGTA 60.264 50.000 24.99 19.32 41.95 2.29
1458 1531 5.507637 CCTAGGGACTACATACGGATGTAT 58.492 45.833 20.64 11.04 45.42 2.29
1459 1532 6.353342 CCCTAGGGACTACATACGGATGTATA 60.353 46.154 24.99 9.08 41.95 1.47
1460 1533 7.288560 CCTAGGGACTACATACGGATGTATAT 58.711 42.308 20.64 12.15 45.42 0.86
1461 1534 8.435187 CCTAGGGACTACATACGGATGTATATA 58.565 40.741 20.64 8.62 45.42 0.86
1462 1535 9.491675 CTAGGGACTACATACGGATGTATATAG 57.508 40.741 20.64 13.28 45.42 1.31
1463 1536 8.098963 AGGGACTACATACGGATGTATATAGA 57.901 38.462 20.64 0.00 45.42 1.98
1464 1537 7.992033 AGGGACTACATACGGATGTATATAGAC 59.008 40.741 20.64 10.95 45.42 2.59
1465 1538 7.772292 GGGACTACATACGGATGTATATAGACA 59.228 40.741 20.64 2.07 45.42 3.41
1466 1539 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
1497 1570 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1498 1571 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1499 1572 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1500 1573 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1501 1574 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1502 1575 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1503 1576 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1504 1577 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1505 1578 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1506 1579 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1507 1580 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1508 1581 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1509 1582 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1510 1583 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1511 1584 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1512 1585 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
1513 1586 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
1514 1587 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
1515 1588 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
1516 1589 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
1517 1590 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
1532 1605 8.337118 TCCATATTGGAATCTCTAAAAGGACT 57.663 34.615 0.00 0.00 45.00 3.85
1533 1606 8.781951 TCCATATTGGAATCTCTAAAAGGACTT 58.218 33.333 0.00 0.00 45.00 3.01
1550 1623 9.907229 AAAAGGACTTATATTTAGGAACAGAGG 57.093 33.333 0.00 0.00 0.00 3.69
1791 1866 8.898761 TGTAATGTTGATCTGTTAACAGTTTGT 58.101 29.630 29.83 17.05 44.12 2.83
1820 1895 0.325933 TGATGGTCCAGCCTGTTGAG 59.674 55.000 4.29 0.00 38.35 3.02
1951 2026 3.436704 TCATTTCTTTGATGTCGCCACTC 59.563 43.478 0.00 0.00 0.00 3.51
1987 2062 8.033178 TCTTCATTTGACCAGATCACCATATA 57.967 34.615 0.00 0.00 36.92 0.86
2245 2413 8.071368 TGTAACCATAAACATTTTCACGACTTC 58.929 33.333 0.00 0.00 0.00 3.01
2256 2424 1.266718 TCACGACTTCTGCATTTTGCC 59.733 47.619 0.00 0.00 44.23 4.52
2401 2569 4.954875 AGTTTGAAGTCTCTTGACCTCAG 58.045 43.478 0.00 0.00 42.48 3.35
2495 2741 5.526846 TGAGCTAAATTTGCCTTTTGTTTGG 59.473 36.000 0.00 0.00 0.00 3.28
2529 2775 7.747690 TCTACTTATTTTCCCAAGTACCAACA 58.252 34.615 0.00 0.00 36.44 3.33
2538 2784 5.450453 TCCCAAGTACCAACAATCAGAAAA 58.550 37.500 0.00 0.00 0.00 2.29
2540 2786 5.278957 CCCAAGTACCAACAATCAGAAAAGG 60.279 44.000 0.00 0.00 0.00 3.11
2572 2827 1.067142 TGATACTTGTGACGGACAGCC 60.067 52.381 0.00 0.00 35.44 4.85
2918 4296 0.388134 TGAACGTAAGCGCAGGAGAC 60.388 55.000 11.47 0.00 42.83 3.36
2945 4323 9.099071 ACTGCTTCTCTAATATATCTGTGGAAT 57.901 33.333 0.00 0.00 0.00 3.01
3178 4556 3.950397 TCAGCGACACTTATTTTGGGAT 58.050 40.909 0.00 0.00 0.00 3.85
3196 4574 6.742559 TGGGATGGAAGGAGTATTACTTAC 57.257 41.667 0.00 0.00 0.00 2.34
3223 4601 1.761784 TGTTTGCCTCATTGTTTGGCT 59.238 42.857 15.06 0.00 46.23 4.75
3303 4685 3.826157 CAGACAACCTAGAATTGCCCAAA 59.174 43.478 6.61 0.00 0.00 3.28
3647 5056 7.093771 GGACAATTCTCATGGAAACCAATACTT 60.094 37.037 0.00 0.00 36.95 2.24
3987 8406 4.559251 GCGTACTCTTATCAGCATTATCGG 59.441 45.833 0.00 0.00 0.00 4.18
4414 9172 1.261619 GCTATCCGTTTGAAGCATCGG 59.738 52.381 0.00 0.00 43.65 4.18
4562 9420 8.770438 TTAGTTTTGTTTCATGTTTTGCTCTT 57.230 26.923 0.00 0.00 0.00 2.85
4841 9723 3.045634 CTGGAGGGTCTCTCTCTCTCTA 58.954 54.545 0.00 0.00 42.91 2.43
4887 13211 7.518161 CATGTTGTGTACTGTTACTAACATGG 58.482 38.462 23.16 15.21 45.81 3.66
5031 14279 5.940470 ACTGATTGTTCCTTCAGGTAACATC 59.060 40.000 10.04 10.01 42.93 3.06
5064 14323 9.978044 AGTAGTCGTGTTTCTTAACTTAGAAAT 57.022 29.630 0.00 0.00 43.73 2.17
5085 14344 6.445451 AATCTGAGGGATTGTAGCATGTAT 57.555 37.500 0.00 0.00 42.46 2.29
5095 14354 7.600752 GGGATTGTAGCATGTATAGTTTCTCTC 59.399 40.741 0.00 0.00 0.00 3.20
5099 14358 7.708051 TGTAGCATGTATAGTTTCTCTCACTC 58.292 38.462 0.00 0.00 0.00 3.51
5304 14633 0.657368 CGAACTTGCGACCAGTTTGC 60.657 55.000 0.00 0.00 0.00 3.68
5473 14821 4.789807 CACTGAATTTCTCCATGGATCCT 58.210 43.478 16.63 0.00 0.00 3.24
5489 14837 3.067320 GGATCCTTTGATTACTGCCTTGC 59.933 47.826 3.84 0.00 0.00 4.01
5519 14867 4.532834 TGGTGAAATTTATCCCTGGTAGC 58.467 43.478 8.15 0.00 0.00 3.58
5522 14870 4.580580 GTGAAATTTATCCCTGGTAGCCTG 59.419 45.833 0.00 0.00 0.00 4.85
5633 14983 4.625742 GTCAGTCACACGTTGCAGTATTAT 59.374 41.667 0.00 0.00 0.00 1.28
5634 14984 4.862574 TCAGTCACACGTTGCAGTATTATC 59.137 41.667 0.00 0.00 0.00 1.75
5651 15001 8.103305 CAGTATTATCCCCTATGTACTGCAAAT 58.897 37.037 0.00 0.00 34.33 2.32
5850 15200 4.758674 CGATGATTTTGTCCATATGCTCCT 59.241 41.667 0.00 0.00 0.00 3.69
5882 15232 2.096417 GTGTTACTCGTGTGCCATGTTC 60.096 50.000 0.00 0.00 0.00 3.18
5883 15233 2.139917 GTTACTCGTGTGCCATGTTCA 58.860 47.619 0.00 0.00 0.00 3.18
5917 15268 1.130561 GACGGGTAGCTTGTTTGATGC 59.869 52.381 0.00 0.00 0.00 3.91
5932 15283 2.867624 TGATGCTGATTTCTATGGGCC 58.132 47.619 0.00 0.00 0.00 5.80
5960 15311 6.083098 CACATTTGGGTCTGTGTTTTATGA 57.917 37.500 0.00 0.00 38.33 2.15
5999 15352 2.344950 GTGATCTTGTGACTCCAGCAG 58.655 52.381 0.00 0.00 0.00 4.24
6019 15372 4.494526 GCAGTTGCATTTGTGTTTTTGAGG 60.495 41.667 0.00 0.00 41.59 3.86
6022 15375 4.462508 TGCATTTGTGTTTTTGAGGTCA 57.537 36.364 0.00 0.00 0.00 4.02
6023 15376 4.180057 TGCATTTGTGTTTTTGAGGTCAC 58.820 39.130 0.00 0.00 0.00 3.67
6024 15377 3.555547 GCATTTGTGTTTTTGAGGTCACC 59.444 43.478 0.00 0.00 0.00 4.02
6026 15379 4.448537 TTTGTGTTTTTGAGGTCACCTG 57.551 40.909 0.00 0.00 31.76 4.00
6037 15431 1.187087 GGTCACCTGCTGTAGCTAGT 58.813 55.000 5.38 0.00 42.66 2.57
6058 15718 7.012421 GCTAGTGTTATCATACCTTTTCCCAAG 59.988 40.741 0.00 0.00 0.00 3.61
6059 15719 5.652452 AGTGTTATCATACCTTTTCCCAAGC 59.348 40.000 0.00 0.00 0.00 4.01
6060 15720 5.417580 GTGTTATCATACCTTTTCCCAAGCA 59.582 40.000 0.00 0.00 0.00 3.91
6061 15721 6.096846 GTGTTATCATACCTTTTCCCAAGCAT 59.903 38.462 0.00 0.00 0.00 3.79
6062 15722 7.284489 GTGTTATCATACCTTTTCCCAAGCATA 59.716 37.037 0.00 0.00 0.00 3.14
6063 15723 8.004215 TGTTATCATACCTTTTCCCAAGCATAT 58.996 33.333 0.00 0.00 0.00 1.78
6065 15725 6.713762 TCATACCTTTTCCCAAGCATATTG 57.286 37.500 0.00 0.00 0.00 1.90
6066 15726 6.430864 TCATACCTTTTCCCAAGCATATTGA 58.569 36.000 0.00 0.00 0.00 2.57
6067 15727 7.068702 TCATACCTTTTCCCAAGCATATTGAT 58.931 34.615 0.00 0.00 0.00 2.57
6068 15728 8.224025 TCATACCTTTTCCCAAGCATATTGATA 58.776 33.333 0.00 0.00 0.00 2.15
6071 15731 7.955918 ACCTTTTCCCAAGCATATTGATATTC 58.044 34.615 0.00 0.00 0.00 1.75
6072 15732 7.786464 ACCTTTTCCCAAGCATATTGATATTCT 59.214 33.333 0.00 0.00 0.00 2.40
6073 15733 8.302438 CCTTTTCCCAAGCATATTGATATTCTC 58.698 37.037 0.00 0.00 0.00 2.87
6074 15734 9.075678 CTTTTCCCAAGCATATTGATATTCTCT 57.924 33.333 0.00 0.00 0.00 3.10
6076 15736 9.507329 TTTCCCAAGCATATTGATATTCTCTAC 57.493 33.333 0.00 0.00 0.00 2.59
6079 15759 7.490725 CCCAAGCATATTGATATTCTCTACTCG 59.509 40.741 0.00 0.00 0.00 4.18
6083 15763 9.632807 AGCATATTGATATTCTCTACTCGTTTC 57.367 33.333 0.00 0.00 0.00 2.78
6084 15764 8.579600 GCATATTGATATTCTCTACTCGTTTCG 58.420 37.037 0.00 0.00 0.00 3.46
6096 15776 2.286833 ACTCGTTTCGTTCCATGTTGTG 59.713 45.455 0.00 0.00 0.00 3.33
6098 15778 3.455327 TCGTTTCGTTCCATGTTGTGTA 58.545 40.909 0.00 0.00 0.00 2.90
6099 15779 4.059511 TCGTTTCGTTCCATGTTGTGTAT 58.940 39.130 0.00 0.00 0.00 2.29
6100 15780 4.084276 TCGTTTCGTTCCATGTTGTGTATG 60.084 41.667 0.00 0.00 0.00 2.39
6101 15781 4.319190 CGTTTCGTTCCATGTTGTGTATGT 60.319 41.667 0.00 0.00 0.00 2.29
6102 15782 5.107414 CGTTTCGTTCCATGTTGTGTATGTA 60.107 40.000 0.00 0.00 0.00 2.29
6104 15784 7.201453 CGTTTCGTTCCATGTTGTGTATGTATA 60.201 37.037 0.00 0.00 0.00 1.47
6106 15786 8.725405 TTCGTTCCATGTTGTGTATGTATATT 57.275 30.769 0.00 0.00 0.00 1.28
6107 15787 9.819267 TTCGTTCCATGTTGTGTATGTATATTA 57.181 29.630 0.00 0.00 0.00 0.98
6108 15788 9.471084 TCGTTCCATGTTGTGTATGTATATTAG 57.529 33.333 0.00 0.00 0.00 1.73
6154 16014 9.787435 AACTAGTTTGGTGTTGTAGATATTGAA 57.213 29.630 1.12 0.00 0.00 2.69
6205 16154 3.764237 AAATGTCACCACCTAACGAGT 57.236 42.857 0.00 0.00 0.00 4.18
6206 16155 3.314541 AATGTCACCACCTAACGAGTC 57.685 47.619 0.00 0.00 0.00 3.36
6210 16159 0.456312 CACCACCTAACGAGTCTCGC 60.456 60.000 22.00 0.00 45.12 5.03
6211 16160 0.608582 ACCACCTAACGAGTCTCGCT 60.609 55.000 22.00 12.82 45.12 4.93
6219 16168 4.539881 GAGTCTCGCTCGACCGGC 62.540 72.222 0.00 0.00 34.46 6.13
6227 16176 3.788766 CTCGACCGGCGGCAAAAG 61.789 66.667 28.71 14.68 41.33 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.467084 TTCCTGGGACGCATCGGC 62.467 66.667 0.00 0.00 0.00 5.54
11 12 2.511600 GTTCCTGGGACGCATCGG 60.512 66.667 0.00 0.00 0.00 4.18
12 13 2.629050 ATCGTTCCTGGGACGCATCG 62.629 60.000 22.70 0.00 0.00 3.84
13 14 0.462047 AATCGTTCCTGGGACGCATC 60.462 55.000 22.70 0.00 0.00 3.91
14 15 0.035439 AAATCGTTCCTGGGACGCAT 60.035 50.000 22.70 13.59 0.00 4.73
15 16 0.250553 AAAATCGTTCCTGGGACGCA 60.251 50.000 22.70 11.89 0.00 5.24
16 17 0.879090 AAAAATCGTTCCTGGGACGC 59.121 50.000 22.70 0.00 0.00 5.19
17 18 2.095372 GCTAAAAATCGTTCCTGGGACG 59.905 50.000 21.56 21.56 0.00 4.79
18 19 2.095372 CGCTAAAAATCGTTCCTGGGAC 59.905 50.000 0.00 0.00 0.00 4.46
19 20 2.352388 CGCTAAAAATCGTTCCTGGGA 58.648 47.619 0.00 0.00 0.00 4.37
20 21 1.202143 GCGCTAAAAATCGTTCCTGGG 60.202 52.381 0.00 0.00 0.00 4.45
21 22 1.202143 GGCGCTAAAAATCGTTCCTGG 60.202 52.381 7.64 0.00 0.00 4.45
22 23 1.737793 AGGCGCTAAAAATCGTTCCTG 59.262 47.619 7.64 0.00 0.00 3.86
23 24 2.007608 GAGGCGCTAAAAATCGTTCCT 58.992 47.619 7.64 0.00 0.00 3.36
24 25 1.063616 GGAGGCGCTAAAAATCGTTCC 59.936 52.381 7.64 0.00 0.00 3.62
25 26 2.007608 AGGAGGCGCTAAAAATCGTTC 58.992 47.619 7.64 0.00 0.00 3.95
26 27 1.737793 CAGGAGGCGCTAAAAATCGTT 59.262 47.619 7.64 0.00 0.00 3.85
27 28 1.066430 TCAGGAGGCGCTAAAAATCGT 60.066 47.619 7.64 0.00 0.00 3.73
28 29 1.594862 CTCAGGAGGCGCTAAAAATCG 59.405 52.381 7.64 0.00 0.00 3.34
29 30 1.943340 CCTCAGGAGGCGCTAAAAATC 59.057 52.381 7.64 0.00 42.44 2.17
30 31 2.044123 CCTCAGGAGGCGCTAAAAAT 57.956 50.000 7.64 0.00 42.44 1.82
31 32 3.551259 CCTCAGGAGGCGCTAAAAA 57.449 52.632 7.64 0.00 42.44 1.94
41 42 4.101448 CCGTTGGGCCCTCAGGAG 62.101 72.222 25.70 8.26 33.47 3.69
51 52 1.372087 GAGCATCTTCAGCCGTTGGG 61.372 60.000 0.00 0.00 0.00 4.12
52 53 2.093216 GAGCATCTTCAGCCGTTGG 58.907 57.895 0.00 0.00 0.00 3.77
64 65 3.005155 GTCATTGGGCCATTAAGAGCATC 59.995 47.826 7.26 0.00 0.00 3.91
65 66 2.961062 GTCATTGGGCCATTAAGAGCAT 59.039 45.455 7.26 0.00 0.00 3.79
66 67 2.378038 GTCATTGGGCCATTAAGAGCA 58.622 47.619 7.26 0.00 0.00 4.26
67 68 1.334869 CGTCATTGGGCCATTAAGAGC 59.665 52.381 7.26 0.00 0.00 4.09
68 69 2.874701 CTCGTCATTGGGCCATTAAGAG 59.125 50.000 7.26 9.29 0.00 2.85
69 70 2.421388 CCTCGTCATTGGGCCATTAAGA 60.421 50.000 7.26 2.87 0.00 2.10
70 71 1.949525 CCTCGTCATTGGGCCATTAAG 59.050 52.381 7.26 0.00 0.00 1.85
71 72 1.562008 TCCTCGTCATTGGGCCATTAA 59.438 47.619 7.26 0.00 0.00 1.40
72 73 1.140852 CTCCTCGTCATTGGGCCATTA 59.859 52.381 7.26 0.00 0.00 1.90
73 74 0.107017 CTCCTCGTCATTGGGCCATT 60.107 55.000 7.26 0.00 0.00 3.16
74 75 1.528824 CTCCTCGTCATTGGGCCAT 59.471 57.895 7.26 0.00 0.00 4.40
75 76 2.989639 CTCCTCGTCATTGGGCCA 59.010 61.111 0.00 0.00 0.00 5.36
76 77 2.514824 GCTCCTCGTCATTGGGCC 60.515 66.667 0.00 0.00 0.00 5.80
77 78 2.514824 GGCTCCTCGTCATTGGGC 60.515 66.667 0.00 0.00 0.00 5.36
78 79 2.202932 CGGCTCCTCGTCATTGGG 60.203 66.667 0.00 0.00 0.00 4.12
79 80 2.892425 GCGGCTCCTCGTCATTGG 60.892 66.667 0.00 0.00 0.00 3.16
80 81 1.880340 GAGCGGCTCCTCGTCATTG 60.880 63.158 19.20 0.00 0.00 2.82
81 82 2.496817 GAGCGGCTCCTCGTCATT 59.503 61.111 19.20 0.00 0.00 2.57
82 83 3.532155 GGAGCGGCTCCTCGTCAT 61.532 66.667 35.90 0.00 46.41 3.06
94 95 3.800685 TTGTGTGGTCACGGGAGCG 62.801 63.158 12.93 0.00 46.49 5.03
95 96 2.110213 TTGTGTGGTCACGGGAGC 59.890 61.111 10.62 10.62 46.49 4.70
96 97 1.597027 GGTTGTGTGGTCACGGGAG 60.597 63.158 0.00 0.00 46.49 4.30
97 98 2.506962 GGTTGTGTGGTCACGGGA 59.493 61.111 0.00 0.00 46.49 5.14
98 99 2.593436 GGGTTGTGTGGTCACGGG 60.593 66.667 0.00 0.00 46.49 5.28
99 100 0.821711 ATTGGGTTGTGTGGTCACGG 60.822 55.000 0.00 0.00 46.49 4.94
100 101 0.310543 CATTGGGTTGTGTGGTCACG 59.689 55.000 0.00 0.00 46.49 4.35
101 102 1.066908 CACATTGGGTTGTGTGGTCAC 59.933 52.381 0.00 0.00 41.65 3.67
102 103 1.397672 CACATTGGGTTGTGTGGTCA 58.602 50.000 0.00 0.00 41.65 4.02
103 104 0.031994 GCACATTGGGTTGTGTGGTC 59.968 55.000 7.50 0.00 46.93 4.02
104 105 2.123409 GCACATTGGGTTGTGTGGT 58.877 52.632 7.50 0.00 46.93 4.16
105 106 1.269448 GTAGCACATTGGGTTGTGTGG 59.731 52.381 7.50 0.00 46.93 4.17
106 107 1.952990 TGTAGCACATTGGGTTGTGTG 59.047 47.619 6.46 1.38 46.93 3.82
107 108 2.356665 TGTAGCACATTGGGTTGTGT 57.643 45.000 6.46 0.00 46.93 3.72
109 110 1.606668 CGTTGTAGCACATTGGGTTGT 59.393 47.619 0.00 0.00 0.00 3.32
110 111 1.606668 ACGTTGTAGCACATTGGGTTG 59.393 47.619 0.00 0.00 0.00 3.77
111 112 1.975660 ACGTTGTAGCACATTGGGTT 58.024 45.000 0.00 0.00 0.00 4.11
112 113 1.877443 GAACGTTGTAGCACATTGGGT 59.123 47.619 5.00 0.00 0.00 4.51
113 114 1.199097 GGAACGTTGTAGCACATTGGG 59.801 52.381 5.00 0.00 0.00 4.12
114 115 1.876799 TGGAACGTTGTAGCACATTGG 59.123 47.619 5.00 0.00 0.00 3.16
115 116 2.916111 GTGGAACGTTGTAGCACATTG 58.084 47.619 5.00 0.00 0.00 2.82
133 134 2.047655 TAAACGAGCCAGCCCGTG 60.048 61.111 0.00 0.00 39.14 4.94
134 135 1.252904 TAGTAAACGAGCCAGCCCGT 61.253 55.000 0.00 0.00 41.14 5.28
135 136 0.108520 TTAGTAAACGAGCCAGCCCG 60.109 55.000 0.00 0.00 0.00 6.13
136 137 2.103537 TTTAGTAAACGAGCCAGCCC 57.896 50.000 0.00 0.00 0.00 5.19
137 138 3.007635 ACATTTAGTAAACGAGCCAGCC 58.992 45.455 0.00 0.00 0.00 4.85
138 139 3.727970 GCACATTTAGTAAACGAGCCAGC 60.728 47.826 0.00 0.00 0.00 4.85
139 140 3.181510 GGCACATTTAGTAAACGAGCCAG 60.182 47.826 20.59 0.70 39.35 4.85
140 141 2.745281 GGCACATTTAGTAAACGAGCCA 59.255 45.455 20.59 0.00 39.35 4.75
141 142 2.222953 CGGCACATTTAGTAAACGAGCC 60.223 50.000 17.00 17.00 36.33 4.70
142 143 2.786700 GCGGCACATTTAGTAAACGAGC 60.787 50.000 2.98 2.98 0.00 5.03
143 144 2.534150 CGCGGCACATTTAGTAAACGAG 60.534 50.000 0.00 0.00 0.00 4.18
144 145 1.390803 CGCGGCACATTTAGTAAACGA 59.609 47.619 0.00 0.00 0.00 3.85
145 146 1.793113 CGCGGCACATTTAGTAAACG 58.207 50.000 0.00 0.00 0.00 3.60
146 147 1.530856 GCGCGGCACATTTAGTAAAC 58.469 50.000 8.83 0.00 0.00 2.01
147 148 0.448593 GGCGCGGCACATTTAGTAAA 59.551 50.000 29.32 0.00 0.00 2.01
148 149 0.391927 AGGCGCGGCACATTTAGTAA 60.392 50.000 34.94 0.00 0.00 2.24
149 150 1.087202 CAGGCGCGGCACATTTAGTA 61.087 55.000 34.94 0.00 0.00 1.82
150 151 2.046314 AGGCGCGGCACATTTAGT 60.046 55.556 34.94 8.37 0.00 2.24
151 152 2.404789 CAGGCGCGGCACATTTAG 59.595 61.111 34.94 10.86 0.00 1.85
152 153 3.130819 CCAGGCGCGGCACATTTA 61.131 61.111 34.94 0.00 0.00 1.40
166 167 2.362120 CCTTGCTTCCTGGCCCAG 60.362 66.667 2.91 2.91 0.00 4.45
167 168 4.684134 GCCTTGCTTCCTGGCCCA 62.684 66.667 0.00 0.00 40.71 5.36
168 169 4.684134 TGCCTTGCTTCCTGGCCC 62.684 66.667 0.00 0.00 45.56 5.80
169 170 3.376918 GTGCCTTGCTTCCTGGCC 61.377 66.667 0.00 0.00 45.56 5.36
170 171 3.741476 CGTGCCTTGCTTCCTGGC 61.741 66.667 0.00 0.00 46.26 4.85
171 172 2.281761 ACGTGCCTTGCTTCCTGG 60.282 61.111 0.00 0.00 0.00 4.45
172 173 2.620112 CCACGTGCCTTGCTTCCTG 61.620 63.158 10.91 0.00 0.00 3.86
173 174 2.281761 CCACGTGCCTTGCTTCCT 60.282 61.111 10.91 0.00 0.00 3.36
174 175 3.365265 CCCACGTGCCTTGCTTCC 61.365 66.667 10.91 0.00 0.00 3.46
175 176 4.043200 GCCCACGTGCCTTGCTTC 62.043 66.667 10.91 0.00 0.00 3.86
239 240 2.665000 CACGGCCCACAGAGACAT 59.335 61.111 0.00 0.00 0.00 3.06
302 304 1.353091 GGGAGTCAGTGGGTTTCTCT 58.647 55.000 0.00 0.00 0.00 3.10
324 326 2.912987 ATCGGGGACAGGAGTCGGAG 62.913 65.000 0.00 0.00 45.92 4.63
334 336 1.382695 GGGAGGAGAATCGGGGACA 60.383 63.158 0.00 0.00 34.37 4.02
575 577 1.978617 ACCTCAAATTGGCTGGCCG 60.979 57.895 7.14 0.00 39.42 6.13
584 586 3.575805 TGGAGAAAAGGCACCTCAAATT 58.424 40.909 0.00 0.00 0.00 1.82
594 596 1.827344 CTTGGGGAATGGAGAAAAGGC 59.173 52.381 0.00 0.00 0.00 4.35
652 654 9.557061 CATAATCCACCTGATAGATAATCCATG 57.443 37.037 0.00 0.00 33.22 3.66
704 706 3.441922 TGTGCAAAGTTATGTGTGTGTGT 59.558 39.130 0.00 0.00 0.00 3.72
718 720 6.700960 TTGGACACAAGAAATTATGTGCAAAG 59.299 34.615 15.13 0.00 46.22 2.77
782 784 9.698617 GCGAAAATTTACATTCTAGTATCGTTT 57.301 29.630 0.00 0.00 0.00 3.60
784 786 8.540492 CAGCGAAAATTTACATTCTAGTATCGT 58.460 33.333 0.00 0.00 0.00 3.73
785 787 8.540492 ACAGCGAAAATTTACATTCTAGTATCG 58.460 33.333 0.00 0.00 0.00 2.92
854 856 0.764271 TCACCTGATTGGACACAGCA 59.236 50.000 0.00 0.00 39.71 4.41
968 970 2.305927 CAGTGGTGGGTCTAGGATTTGT 59.694 50.000 0.00 0.00 0.00 2.83
1041 1043 2.920912 AGAACGAGGCGGAACCCA 60.921 61.111 0.00 0.00 40.58 4.51
1236 1247 1.375908 CGCCTGCTTCAGCCAGTAA 60.376 57.895 0.00 0.00 41.18 2.24
1342 1415 0.036105 CCTGGCCTCAAAATTTGGGC 60.036 55.000 21.84 21.84 45.24 5.36
1367 1440 2.598288 ATAATACCACCTCCCACCCA 57.402 50.000 0.00 0.00 0.00 4.51
1415 1488 8.769359 CCCTAGGGAAATCTCTAAAAAGACTTA 58.231 37.037 24.99 0.00 37.50 2.24
1416 1489 7.461363 TCCCTAGGGAAATCTCTAAAAAGACTT 59.539 37.037 29.24 0.00 42.05 3.01
1417 1490 6.966461 TCCCTAGGGAAATCTCTAAAAAGACT 59.034 38.462 29.24 0.00 42.05 3.24
1418 1491 7.196637 TCCCTAGGGAAATCTCTAAAAAGAC 57.803 40.000 29.24 0.00 42.05 3.01
1430 1503 9.787227 ACATCCGTATGTAGTCCCTAGGGAAAT 62.787 44.444 32.73 24.62 44.41 2.17
1431 1504 8.576523 ACATCCGTATGTAGTCCCTAGGGAAA 62.577 46.154 32.73 20.33 44.41 3.13
1432 1505 7.179123 ACATCCGTATGTAGTCCCTAGGGAA 62.179 48.000 32.73 17.49 44.41 3.97
1433 1506 2.421725 TCCGTATGTAGTCCCTAGGGA 58.578 52.381 27.73 27.73 42.90 4.20
1434 1507 2.965671 TCCGTATGTAGTCCCTAGGG 57.034 55.000 23.22 23.22 0.00 3.53
1435 1508 3.764218 ACATCCGTATGTAGTCCCTAGG 58.236 50.000 0.06 0.06 44.66 3.02
1475 1548 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1476 1549 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1477 1550 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1478 1551 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1479 1552 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1480 1553 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1481 1554 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1482 1555 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1483 1556 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1484 1557 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1485 1558 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1486 1559 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1487 1560 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1488 1561 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
1489 1562 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1490 1563 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1491 1564 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
1492 1565 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
1493 1566 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
1494 1567 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
1495 1568 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
1507 1580 8.337118 AGTCCTTTTAGAGATTCCAATATGGA 57.663 34.615 0.00 0.00 46.61 3.41
1508 1581 8.986929 AAGTCCTTTTAGAGATTCCAATATGG 57.013 34.615 0.00 0.00 39.43 2.74
1524 1597 9.907229 CCTCTGTTCCTAAATATAAGTCCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
1525 1598 8.495260 CCCTCTGTTCCTAAATATAAGTCCTTT 58.505 37.037 0.00 0.00 0.00 3.11
1526 1599 7.849904 TCCCTCTGTTCCTAAATATAAGTCCTT 59.150 37.037 0.00 0.00 0.00 3.36
1527 1600 7.371043 TCCCTCTGTTCCTAAATATAAGTCCT 58.629 38.462 0.00 0.00 0.00 3.85
1528 1601 7.290481 ACTCCCTCTGTTCCTAAATATAAGTCC 59.710 40.741 0.00 0.00 0.00 3.85
1529 1602 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
1530 1603 9.900112 ATACTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
1534 1607 9.670442 TGTAATACTCCCTCTGTTCCTAAATAT 57.330 33.333 0.00 0.00 0.00 1.28
1535 1608 9.144298 CTGTAATACTCCCTCTGTTCCTAAATA 57.856 37.037 0.00 0.00 0.00 1.40
1536 1609 7.844779 TCTGTAATACTCCCTCTGTTCCTAAAT 59.155 37.037 0.00 0.00 0.00 1.40
1537 1610 7.186972 TCTGTAATACTCCCTCTGTTCCTAAA 58.813 38.462 0.00 0.00 0.00 1.85
1538 1611 6.738635 TCTGTAATACTCCCTCTGTTCCTAA 58.261 40.000 0.00 0.00 0.00 2.69
1539 1612 6.337185 TCTGTAATACTCCCTCTGTTCCTA 57.663 41.667 0.00 0.00 0.00 2.94
1540 1613 5.205056 CTCTGTAATACTCCCTCTGTTCCT 58.795 45.833 0.00 0.00 0.00 3.36
1541 1614 4.202172 GCTCTGTAATACTCCCTCTGTTCC 60.202 50.000 0.00 0.00 0.00 3.62
1542 1615 4.402793 TGCTCTGTAATACTCCCTCTGTTC 59.597 45.833 0.00 0.00 0.00 3.18
1543 1616 4.353777 TGCTCTGTAATACTCCCTCTGTT 58.646 43.478 0.00 0.00 0.00 3.16
1544 1617 3.982516 TGCTCTGTAATACTCCCTCTGT 58.017 45.455 0.00 0.00 0.00 3.41
1545 1618 5.543507 ATTGCTCTGTAATACTCCCTCTG 57.456 43.478 0.00 0.00 0.00 3.35
1546 1619 6.567602 AAATTGCTCTGTAATACTCCCTCT 57.432 37.500 0.00 0.00 0.00 3.69
1547 1620 7.631717 AAAAATTGCTCTGTAATACTCCCTC 57.368 36.000 0.00 0.00 0.00 4.30
1548 1621 9.528489 TTTAAAAATTGCTCTGTAATACTCCCT 57.472 29.630 0.00 0.00 0.00 4.20
1791 1866 4.227300 AGGCTGGACCATCATTTACAAGTA 59.773 41.667 0.00 0.00 43.14 2.24
1902 1977 2.568623 AGCATCAAAACGAAGGACCT 57.431 45.000 0.00 0.00 0.00 3.85
1951 2026 5.645067 TGGTCAAATGAAGAGACATAGCAAG 59.355 40.000 0.00 0.00 34.04 4.01
2066 2224 8.520351 ACTGGTTTAAATGAAAAGTACATAGCC 58.480 33.333 0.00 0.00 0.00 3.93
2228 2396 4.630894 TGCAGAAGTCGTGAAAATGTTT 57.369 36.364 0.00 0.00 0.00 2.83
2236 2404 2.686558 GCAAAATGCAGAAGTCGTGA 57.313 45.000 0.00 0.00 44.26 4.35
2256 2424 5.983118 TGAGTGTAATATTACATGACTGCCG 59.017 40.000 26.70 0.00 44.59 5.69
2401 2569 6.738114 TCACCAGAATTGTTCACTGATTTTC 58.262 36.000 0.00 0.00 34.07 2.29
2495 2741 4.876679 GGGAAAATAAGTAGAGAGTGGTGC 59.123 45.833 0.00 0.00 0.00 5.01
2538 2784 9.313118 GTCACAAGTATCAAAAATTCAAAACCT 57.687 29.630 0.00 0.00 0.00 3.50
2540 2786 8.265998 CCGTCACAAGTATCAAAAATTCAAAAC 58.734 33.333 0.00 0.00 0.00 2.43
2572 2827 4.737855 TCTCTAAGATTTCACTTCCGGG 57.262 45.455 0.00 0.00 0.00 5.73
2698 4074 7.884354 ACATTAAATTCCACAAGGCAAATTCAT 59.116 29.630 0.00 0.00 33.74 2.57
2699 4075 7.172875 CACATTAAATTCCACAAGGCAAATTCA 59.827 33.333 0.00 0.00 33.74 2.57
2710 4086 8.768397 AGAGGACTATACACATTAAATTCCACA 58.232 33.333 0.00 0.00 0.00 4.17
2798 4175 5.171476 AGAGAGTAATGTTCCATTCACACG 58.829 41.667 0.00 0.00 0.00 4.49
2918 4296 7.890515 TCCACAGATATATTAGAGAAGCAGTG 58.109 38.462 0.00 0.00 0.00 3.66
2945 4323 4.042809 ACACAGGTGATTATTGTCCAAGGA 59.957 41.667 6.40 0.00 0.00 3.36
3047 4425 1.349067 AGGCTAGAGGGAAACACGTT 58.651 50.000 0.00 0.00 0.00 3.99
3048 4426 1.275573 GAAGGCTAGAGGGAAACACGT 59.724 52.381 0.00 0.00 0.00 4.49
3178 4556 8.746530 CAACTAGTGTAAGTAATACTCCTTCCA 58.253 37.037 0.00 0.00 35.42 3.53
3196 4574 4.836125 ACAATGAGGCAAACAACTAGTG 57.164 40.909 0.00 0.00 0.00 2.74
3223 4601 8.593945 ATTAACTGAGGATTTGCCAAATAGAA 57.406 30.769 1.95 0.00 40.02 2.10
3273 4655 6.541641 GCAATTCTAGGTTGTCTGAAGATCAT 59.458 38.462 0.00 0.00 0.00 2.45
3353 4742 6.406849 GGTGTGTTGCCATAACATATCCAAAT 60.407 38.462 0.00 0.00 32.23 2.32
3647 5056 7.336679 CAGATAAACACCCACAATATGAAGTGA 59.663 37.037 0.00 0.00 37.97 3.41
3820 7778 8.378172 GGAAACCCCTTTCATTAAAAAGAAAG 57.622 34.615 15.80 15.80 46.36 2.62
3966 8385 7.916450 GGATACCGATAATGCTGATAAGAGTAC 59.084 40.741 0.00 0.00 0.00 2.73
3987 8406 3.202151 TGTTGGGGAAATGGAGAGGATAC 59.798 47.826 0.00 0.00 0.00 2.24
4414 9172 2.564721 AAAGGCAAGGAAGCACGGC 61.565 57.895 0.00 0.00 35.83 5.68
4841 9723 6.210385 ACATGTGTGTGTAGAAAGAGAGAGAT 59.790 38.462 0.00 0.00 37.14 2.75
4887 13211 1.512926 CAGTACCCTGTGAACACTGC 58.487 55.000 6.51 0.00 33.80 4.40
5031 14279 4.688511 AGAAACACGACTACTAGCTGAG 57.311 45.455 0.00 0.00 0.00 3.35
5063 14322 6.728164 ACTATACATGCTACAATCCCTCAGAT 59.272 38.462 0.00 0.00 36.48 2.90
5064 14323 6.077993 ACTATACATGCTACAATCCCTCAGA 58.922 40.000 0.00 0.00 0.00 3.27
5085 14344 2.217510 AGGGCGAGTGAGAGAAACTA 57.782 50.000 0.00 0.00 0.00 2.24
5095 14354 3.009723 ACATATGTCAAAAGGGCGAGTG 58.990 45.455 1.41 0.00 0.00 3.51
5304 14633 1.139058 CTACCCAGAATCCCAGAACGG 59.861 57.143 0.00 0.00 0.00 4.44
5473 14821 3.153369 TCAGGCAAGGCAGTAATCAAA 57.847 42.857 0.00 0.00 0.00 2.69
5489 14837 6.040166 CAGGGATAAATTTCACCAAGATCAGG 59.960 42.308 13.21 0.00 0.00 3.86
5519 14867 1.199327 CTGACAAGCTGATTGCACAGG 59.801 52.381 18.69 6.87 45.94 4.00
5522 14870 1.242076 ACCTGACAAGCTGATTGCAC 58.758 50.000 5.42 1.27 45.94 4.57
5633 14983 4.853468 TTGATTTGCAGTACATAGGGGA 57.147 40.909 0.00 0.00 0.00 4.81
5634 14984 4.889409 ACATTGATTTGCAGTACATAGGGG 59.111 41.667 0.00 0.00 0.00 4.79
5651 15001 4.582869 CCAGGAACATCTCTGAACATTGA 58.417 43.478 0.00 0.00 33.11 2.57
5773 15123 9.909644 AGCTCGAATATAACTACAATTAACGAT 57.090 29.630 0.00 0.00 0.00 3.73
5774 15124 9.740239 AAGCTCGAATATAACTACAATTAACGA 57.260 29.630 0.00 0.00 0.00 3.85
5813 15163 3.827008 ATCATCGCATGAGGTTACAGT 57.173 42.857 0.00 0.00 43.53 3.55
5850 15200 1.855978 CGAGTAACACGCACAGAAACA 59.144 47.619 0.00 0.00 0.00 2.83
5882 15232 5.448632 GCTACCCGTCTTTCATTTACCAATG 60.449 44.000 0.00 0.00 41.25 2.82
5883 15233 4.638865 GCTACCCGTCTTTCATTTACCAAT 59.361 41.667 0.00 0.00 0.00 3.16
5917 15268 2.213499 GTGTCGGCCCATAGAAATCAG 58.787 52.381 0.00 0.00 0.00 2.90
5932 15283 1.264020 CACAGACCCAAATGTGTGTCG 59.736 52.381 0.00 0.00 40.39 4.35
5960 15311 9.747898 AAGATCACGGACTAGAGAAGAATATAT 57.252 33.333 0.00 0.00 0.00 0.86
5970 15321 3.692101 AGTCACAAGATCACGGACTAGAG 59.308 47.826 0.00 0.00 37.08 2.43
5978 15331 1.337167 TGCTGGAGTCACAAGATCACG 60.337 52.381 0.00 0.00 0.00 4.35
5981 15334 2.740981 CAACTGCTGGAGTCACAAGATC 59.259 50.000 1.22 0.00 31.73 2.75
5999 15352 4.629200 TGACCTCAAAAACACAAATGCAAC 59.371 37.500 0.00 0.00 0.00 4.17
6019 15372 1.546476 ACACTAGCTACAGCAGGTGAC 59.454 52.381 23.47 0.00 43.24 3.67
6022 15375 4.023980 TGATAACACTAGCTACAGCAGGT 58.976 43.478 3.70 0.00 45.16 4.00
6023 15376 4.655762 TGATAACACTAGCTACAGCAGG 57.344 45.455 3.70 0.00 45.16 4.85
6024 15377 6.015856 AGGTATGATAACACTAGCTACAGCAG 60.016 42.308 3.70 2.04 45.16 4.24
6026 15379 6.334102 AGGTATGATAACACTAGCTACAGC 57.666 41.667 0.00 0.00 42.49 4.40
6037 15431 5.575157 TGCTTGGGAAAAGGTATGATAACA 58.425 37.500 0.00 0.00 0.00 2.41
6058 15718 8.579600 CGAAACGAGTAGAGAATATCAATATGC 58.420 37.037 0.00 0.00 0.00 3.14
6059 15719 9.613957 ACGAAACGAGTAGAGAATATCAATATG 57.386 33.333 0.00 0.00 0.00 1.78
6061 15721 9.661187 GAACGAAACGAGTAGAGAATATCAATA 57.339 33.333 0.00 0.00 0.00 1.90
6062 15722 7.648510 GGAACGAAACGAGTAGAGAATATCAAT 59.351 37.037 0.00 0.00 0.00 2.57
6063 15723 6.971184 GGAACGAAACGAGTAGAGAATATCAA 59.029 38.462 0.00 0.00 0.00 2.57
6065 15725 6.493116 TGGAACGAAACGAGTAGAGAATATC 58.507 40.000 0.00 0.00 0.00 1.63
6066 15726 6.446781 TGGAACGAAACGAGTAGAGAATAT 57.553 37.500 0.00 0.00 0.00 1.28
6067 15727 5.885230 TGGAACGAAACGAGTAGAGAATA 57.115 39.130 0.00 0.00 0.00 1.75
6068 15728 4.778534 TGGAACGAAACGAGTAGAGAAT 57.221 40.909 0.00 0.00 0.00 2.40
6071 15731 3.834610 ACATGGAACGAAACGAGTAGAG 58.165 45.455 0.00 0.00 0.00 2.43
6072 15732 3.928727 ACATGGAACGAAACGAGTAGA 57.071 42.857 0.00 0.00 0.00 2.59
6073 15733 3.739300 ACAACATGGAACGAAACGAGTAG 59.261 43.478 0.00 0.00 0.00 2.57
6074 15734 3.491639 CACAACATGGAACGAAACGAGTA 59.508 43.478 0.00 0.00 0.00 2.59
6075 15735 2.286833 CACAACATGGAACGAAACGAGT 59.713 45.455 0.00 0.00 0.00 4.18
6076 15736 2.286833 ACACAACATGGAACGAAACGAG 59.713 45.455 0.00 0.00 0.00 4.18
6079 15759 5.103290 ACATACACAACATGGAACGAAAC 57.897 39.130 0.00 0.00 0.00 2.78
6083 15763 9.256477 ACTAATATACATACACAACATGGAACG 57.744 33.333 0.00 0.00 0.00 3.95
6132 15867 8.635765 ACATTCAATATCTACAACACCAAACT 57.364 30.769 0.00 0.00 0.00 2.66
6210 16159 3.788766 CTTTTGCCGCCGGTCGAG 61.789 66.667 17.96 10.09 41.67 4.04



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.