Multiple sequence alignment - TraesCS2A01G175900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G175900 chr2A 100.000 4767 0 0 906 5672 134884137 134879371 0.000000e+00 8804
1 TraesCS2A01G175900 chr2A 100.000 615 0 0 1 615 134885042 134884428 0.000000e+00 1136
2 TraesCS2A01G175900 chr2B 92.866 3364 147 38 1774 5094 181616005 181612692 0.000000e+00 4796
3 TraesCS2A01G175900 chr2B 92.045 528 27 7 938 1461 181616823 181616307 0.000000e+00 728
4 TraesCS2A01G175900 chr2B 87.078 503 28 13 95 583 181617966 181617487 8.360000e-148 534
5 TraesCS2A01G175900 chr2B 80.383 209 23 9 5159 5365 181608498 181608306 5.920000e-30 143
6 TraesCS2A01G175900 chr2D 95.479 1681 64 8 1972 3642 127946040 127944362 0.000000e+00 2673
7 TraesCS2A01G175900 chr2D 95.750 1153 32 6 3640 4779 127941962 127940814 0.000000e+00 1842
8 TraesCS2A01G175900 chr2D 93.805 565 22 5 906 1461 127946927 127946367 0.000000e+00 837
9 TraesCS2A01G175900 chr2D 87.603 605 29 11 1 583 127947606 127947026 0.000000e+00 660
10 TraesCS2A01G175900 chr2D 90.467 493 21 4 4903 5395 127940757 127940291 1.340000e-175 627
11 TraesCS2A01G175900 chr2D 91.935 248 19 1 5425 5672 127940248 127940002 4.210000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G175900 chr2A 134879371 134885042 5671 True 4970.000000 8804 100.0000 1 5672 2 chr2A.!!$R1 5671
1 TraesCS2A01G175900 chr2B 181612692 181617966 5274 True 2019.333333 4796 90.6630 95 5094 3 chr2B.!!$R2 4999
2 TraesCS2A01G175900 chr2D 127940002 127947606 7604 True 1164.166667 2673 92.5065 1 5672 6 chr2D.!!$R1 5671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 539 1.003262 CCAAACACGCAGCATTTCCG 61.003 55.000 0.00 0.0 0.0 4.30 F
1590 1951 0.034089 GGTCTCCCCCTGTTTCCATG 60.034 60.000 0.00 0.0 0.0 3.66 F
2428 2830 0.105964 TAGTGGCGTGCTGACTGTTT 59.894 50.000 7.15 0.0 0.0 2.83 F
3355 3771 1.818674 GTAACCCCTAACCGTTCGAGA 59.181 52.381 0.00 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 2830 0.036388 CCGGCAGCTTCTTCTTGGTA 60.036 55.000 0.00 0.0 0.00 3.25 R
3445 3862 0.468226 TGACGCCCAGACTTCAAACT 59.532 50.000 0.00 0.0 0.00 2.66 R
4146 6967 1.404391 CATCTGAAGCAATGGGAGCAC 59.596 52.381 0.00 0.0 0.00 4.40 R
5297 8203 0.694771 AGCTCCAAGCACAGGATGAA 59.305 50.000 1.29 0.0 45.56 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.374758 AGAGGCACGCTTGTACTGC 60.375 57.895 0.00 0.00 31.65 4.40
66 67 1.571919 GCTTGTACTGCACCCGATAG 58.428 55.000 6.56 0.00 0.00 2.08
73 74 5.353938 TGTACTGCACCCGATAGAATAAAC 58.646 41.667 0.00 0.00 39.76 2.01
90 99 7.450627 AGAATAAACGTAACGCATCTGTTTAC 58.549 34.615 0.00 0.00 37.70 2.01
91 100 6.956299 ATAAACGTAACGCATCTGTTTACT 57.044 33.333 0.00 0.00 37.70 2.24
124 133 1.080298 GTCATTTGCAGCCACAGCC 60.080 57.895 0.00 0.00 41.25 4.85
163 172 9.674824 AAAATAGTATACGGAGAGTATGTTTCG 57.325 33.333 0.00 0.00 45.10 3.46
211 220 4.314440 GCTGACACCGACTGCCCA 62.314 66.667 0.00 0.00 0.00 5.36
236 245 2.586357 GCAGTAGTAGCAGCGGGC 60.586 66.667 0.00 0.00 45.30 6.13
246 255 4.473520 CAGCGGGCGTTCCATCCT 62.474 66.667 0.00 0.00 34.36 3.24
247 256 3.717294 AGCGGGCGTTCCATCCTT 61.717 61.111 0.00 0.00 34.36 3.36
248 257 3.508840 GCGGGCGTTCCATCCTTG 61.509 66.667 0.00 0.00 34.36 3.61
249 258 2.824041 CGGGCGTTCCATCCTTGG 60.824 66.667 0.00 0.00 45.15 3.61
250 259 2.440247 GGGCGTTCCATCCTTGGG 60.440 66.667 0.00 0.00 43.81 4.12
258 267 2.767960 GTTCCATCCTTGGGCATTCAAT 59.232 45.455 0.00 0.00 43.81 2.57
265 274 3.903090 TCCTTGGGCATTCAATTTCAAGT 59.097 39.130 0.00 0.00 32.28 3.16
290 299 3.120060 CCGAGTTTGCTCCATCAAAAGAG 60.120 47.826 0.00 0.00 37.65 2.85
299 308 2.632996 TCCATCAAAAGAGGACGTGACT 59.367 45.455 0.00 0.00 0.00 3.41
502 539 1.003262 CCAAACACGCAGCATTTCCG 61.003 55.000 0.00 0.00 0.00 4.30
535 572 1.870055 AAATGAAGGCAGCAGCACCG 61.870 55.000 2.65 0.00 44.61 4.94
550 587 2.143419 ACCGCCTCTGATGATCCCC 61.143 63.158 0.00 0.00 0.00 4.81
565 602 1.075600 CCCCCAACAACCAACCACT 60.076 57.895 0.00 0.00 0.00 4.00
597 670 1.361793 TCGCCACCGCAAGTATAAAC 58.638 50.000 0.00 0.00 34.03 2.01
605 678 5.445010 CCACCGCAAGTATAAACTTTCGTAC 60.445 44.000 8.92 0.00 46.58 3.67
611 684 7.462462 CGCAAGTATAAACTTTCGTACTCCTTC 60.462 40.741 2.81 0.00 43.60 3.46
613 686 7.472334 AGTATAAACTTTCGTACTCCTTCCA 57.528 36.000 0.00 0.00 29.00 3.53
614 687 7.545489 AGTATAAACTTTCGTACTCCTTCCAG 58.455 38.462 0.00 0.00 29.00 3.86
984 1330 2.782222 TTCTCGGAATCGGAGCGGG 61.782 63.158 12.29 0.00 36.95 6.13
1364 1722 0.440371 CTTCGTTCCTCGCTTGCTTC 59.560 55.000 0.00 0.00 39.67 3.86
1455 1816 2.612212 TGTTGACTTTTCCTTCACTCGC 59.388 45.455 0.00 0.00 0.00 5.03
1461 1822 1.760479 TTTCCTTCACTCGCCGGGAA 61.760 55.000 2.18 0.00 34.72 3.97
1462 1823 2.434359 CCTTCACTCGCCGGGAAC 60.434 66.667 2.18 0.00 0.00 3.62
1463 1824 2.657237 CTTCACTCGCCGGGAACT 59.343 61.111 2.18 0.00 0.00 3.01
1464 1825 1.446272 CTTCACTCGCCGGGAACTC 60.446 63.158 2.18 0.00 0.00 3.01
1465 1826 2.837371 CTTCACTCGCCGGGAACTCC 62.837 65.000 2.18 0.00 0.00 3.85
1479 1840 2.092914 GGAACTCCGGATTTCTGATGGT 60.093 50.000 27.63 7.83 0.00 3.55
1480 1841 3.610911 GAACTCCGGATTTCTGATGGTT 58.389 45.455 23.37 12.57 0.00 3.67
1483 1844 4.962155 ACTCCGGATTTCTGATGGTTATC 58.038 43.478 3.57 0.00 0.00 1.75
1485 1846 3.067106 CCGGATTTCTGATGGTTATCGG 58.933 50.000 0.00 0.00 40.42 4.18
1487 1848 3.741344 CGGATTTCTGATGGTTATCGGTC 59.259 47.826 0.00 0.00 40.06 4.79
1495 1856 3.055675 TGATGGTTATCGGTCGGTTTTCT 60.056 43.478 0.00 0.00 36.04 2.52
1504 1865 2.356553 CGGTTTTCTCGTCGGCCA 60.357 61.111 2.24 0.00 0.00 5.36
1505 1866 2.664436 CGGTTTTCTCGTCGGCCAC 61.664 63.158 2.24 0.00 0.00 5.01
1506 1867 2.322830 GGTTTTCTCGTCGGCCACC 61.323 63.158 2.24 0.00 0.00 4.61
1519 1880 4.135153 CCACCGAGGCTCCGTGAG 62.135 72.222 29.50 18.69 0.00 3.51
1520 1881 3.374402 CACCGAGGCTCCGTGAGT 61.374 66.667 25.51 6.56 31.39 3.41
1523 1884 4.803426 CGAGGCTCCGTGAGTGCC 62.803 72.222 9.32 0.00 45.29 5.01
1528 1889 3.449227 CTCCGTGAGTGCCGCCTA 61.449 66.667 0.00 0.00 0.00 3.93
1529 1890 3.701604 CTCCGTGAGTGCCGCCTAC 62.702 68.421 0.00 0.00 0.00 3.18
1530 1891 4.063967 CCGTGAGTGCCGCCTACA 62.064 66.667 0.00 0.00 0.00 2.74
1531 1892 2.507102 CGTGAGTGCCGCCTACAG 60.507 66.667 0.00 0.00 0.00 2.74
1542 1903 2.793933 GCCGCCTACAGTAGTTTCTACG 60.794 54.545 6.84 1.25 0.00 3.51
1551 1912 5.693814 ACAGTAGTTTCTACGTAGTTTCCG 58.306 41.667 21.53 7.29 37.78 4.30
1553 1914 2.951726 AGTTTCTACGTAGTTTCCGGC 58.048 47.619 21.53 7.09 37.78 6.13
1581 1942 3.756783 CCTCTCCGGTCTCCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
1582 1943 2.443016 CTCTCCGGTCTCCCCCTG 60.443 72.222 0.00 0.00 0.00 4.45
1584 1945 2.284699 CTCCGGTCTCCCCCTGTT 60.285 66.667 0.00 0.00 0.00 3.16
1585 1946 1.918800 CTCCGGTCTCCCCCTGTTT 60.919 63.158 0.00 0.00 0.00 2.83
1586 1947 1.900545 CTCCGGTCTCCCCCTGTTTC 61.901 65.000 0.00 0.00 0.00 2.78
1587 1948 2.669240 CGGTCTCCCCCTGTTTCC 59.331 66.667 0.00 0.00 0.00 3.13
1588 1949 2.221299 CGGTCTCCCCCTGTTTCCA 61.221 63.158 0.00 0.00 0.00 3.53
1589 1950 1.562672 CGGTCTCCCCCTGTTTCCAT 61.563 60.000 0.00 0.00 0.00 3.41
1590 1951 0.034089 GGTCTCCCCCTGTTTCCATG 60.034 60.000 0.00 0.00 0.00 3.66
1591 1952 0.034089 GTCTCCCCCTGTTTCCATGG 60.034 60.000 4.97 4.97 0.00 3.66
1592 1953 0.477597 TCTCCCCCTGTTTCCATGGT 60.478 55.000 12.58 0.00 0.00 3.55
1593 1954 0.323725 CTCCCCCTGTTTCCATGGTG 60.324 60.000 12.58 0.00 0.00 4.17
1594 1955 1.305213 CCCCCTGTTTCCATGGTGG 60.305 63.158 12.58 7.47 39.43 4.61
1595 1956 1.773635 CCCCTGTTTCCATGGTGGA 59.226 57.895 12.58 0.00 46.61 4.02
1605 1966 3.754219 TCCATGGTGGAATTTGATCCA 57.246 42.857 12.58 0.00 45.00 3.41
1629 1990 2.639327 ATGCTTTGTCCGGCTTGCC 61.639 57.895 0.00 0.75 0.00 4.52
1635 1996 4.084888 GTCCGGCTTGCCGAAACG 62.085 66.667 32.16 17.01 34.88 3.60
1638 1999 2.098298 CGGCTTGCCGAAACGATG 59.902 61.111 27.61 0.00 34.88 3.84
1641 2002 2.485122 CTTGCCGAAACGATGCCC 59.515 61.111 0.00 0.00 0.00 5.36
1642 2003 3.381169 CTTGCCGAAACGATGCCCG 62.381 63.158 0.00 0.00 45.44 6.13
1643 2004 3.885538 TTGCCGAAACGATGCCCGA 62.886 57.895 2.54 0.00 41.76 5.14
1644 2005 2.895372 GCCGAAACGATGCCCGAT 60.895 61.111 2.54 0.00 41.76 4.18
1645 2006 2.469516 GCCGAAACGATGCCCGATT 61.470 57.895 2.54 0.00 41.76 3.34
1647 2008 0.450184 CCGAAACGATGCCCGATTTT 59.550 50.000 2.54 0.00 41.76 1.82
1648 2009 1.135517 CCGAAACGATGCCCGATTTTT 60.136 47.619 2.54 0.00 41.76 1.94
1649 2010 2.096174 CCGAAACGATGCCCGATTTTTA 59.904 45.455 2.54 0.00 41.76 1.52
1650 2011 3.350912 CGAAACGATGCCCGATTTTTAG 58.649 45.455 2.54 0.00 41.76 1.85
1651 2012 3.691498 GAAACGATGCCCGATTTTTAGG 58.309 45.455 2.54 0.00 41.76 2.69
1654 2015 0.310854 GATGCCCGATTTTTAGGCCG 59.689 55.000 0.00 0.00 46.55 6.13
1655 2016 1.106944 ATGCCCGATTTTTAGGCCGG 61.107 55.000 0.00 0.00 46.55 6.13
1658 2019 1.077285 CCGATTTTTAGGCCGGGGT 60.077 57.895 2.18 0.00 38.42 4.95
1659 2020 0.180878 CCGATTTTTAGGCCGGGGTA 59.819 55.000 2.18 0.00 38.42 3.69
1660 2021 1.408544 CCGATTTTTAGGCCGGGGTAA 60.409 52.381 2.18 0.00 38.42 2.85
1661 2022 2.578786 CGATTTTTAGGCCGGGGTAAT 58.421 47.619 2.18 0.00 0.00 1.89
1662 2023 2.551032 CGATTTTTAGGCCGGGGTAATC 59.449 50.000 2.18 3.98 0.00 1.75
1666 2027 1.402107 TTAGGCCGGGGTAATCGTCC 61.402 60.000 2.18 0.00 0.00 4.79
1670 2065 0.393402 GCCGGGGTAATCGTCCTTTT 60.393 55.000 2.18 0.00 0.00 2.27
1671 2066 1.660167 CCGGGGTAATCGTCCTTTTC 58.340 55.000 0.00 0.00 0.00 2.29
1674 2069 2.674747 CGGGGTAATCGTCCTTTTCGAA 60.675 50.000 0.00 0.00 40.61 3.71
1676 2071 3.368739 GGGGTAATCGTCCTTTTCGAAGA 60.369 47.826 0.00 0.00 40.61 2.87
1678 2073 4.692155 GGGTAATCGTCCTTTTCGAAGAAA 59.308 41.667 0.00 0.00 45.90 2.52
1708 2103 7.636150 ATGCTTACTTCAATTCTATGTTGCT 57.364 32.000 0.00 0.00 0.00 3.91
1710 2105 6.881065 TGCTTACTTCAATTCTATGTTGCTCT 59.119 34.615 0.00 0.00 0.00 4.09
1711 2106 7.148356 TGCTTACTTCAATTCTATGTTGCTCTG 60.148 37.037 0.00 0.00 0.00 3.35
1712 2107 7.148340 GCTTACTTCAATTCTATGTTGCTCTGT 60.148 37.037 0.00 0.00 0.00 3.41
1713 2108 6.734104 ACTTCAATTCTATGTTGCTCTGTC 57.266 37.500 0.00 0.00 0.00 3.51
1715 2110 5.426689 TCAATTCTATGTTGCTCTGTCCT 57.573 39.130 0.00 0.00 0.00 3.85
1716 2111 5.423015 TCAATTCTATGTTGCTCTGTCCTC 58.577 41.667 0.00 0.00 0.00 3.71
1717 2112 5.046376 TCAATTCTATGTTGCTCTGTCCTCA 60.046 40.000 0.00 0.00 0.00 3.86
1718 2113 4.890158 TTCTATGTTGCTCTGTCCTCAA 57.110 40.909 0.00 0.00 0.00 3.02
1726 2121 5.048504 TGTTGCTCTGTCCTCAAAATTCATC 60.049 40.000 0.00 0.00 0.00 2.92
1729 2124 4.699257 GCTCTGTCCTCAAAATTCATCTGT 59.301 41.667 0.00 0.00 0.00 3.41
1736 2131 7.706179 TGTCCTCAAAATTCATCTGTTTTTGTC 59.294 33.333 14.60 8.90 39.90 3.18
1740 2135 8.114359 TCAAAATTCATCTGTTTTTGTCGAAC 57.886 30.769 14.60 0.00 39.90 3.95
1741 2136 7.221838 TCAAAATTCATCTGTTTTTGTCGAACC 59.778 33.333 14.60 0.00 39.90 3.62
1742 2137 6.391227 AATTCATCTGTTTTTGTCGAACCT 57.609 33.333 0.00 0.00 0.00 3.50
1743 2138 4.811555 TCATCTGTTTTTGTCGAACCTG 57.188 40.909 0.00 0.00 0.00 4.00
1744 2139 3.563808 TCATCTGTTTTTGTCGAACCTGG 59.436 43.478 0.00 0.00 0.00 4.45
1745 2140 2.294074 TCTGTTTTTGTCGAACCTGGG 58.706 47.619 0.00 0.00 0.00 4.45
1746 2141 2.021457 CTGTTTTTGTCGAACCTGGGT 58.979 47.619 0.00 0.00 0.00 4.51
1747 2142 2.018515 TGTTTTTGTCGAACCTGGGTC 58.981 47.619 0.28 0.28 0.00 4.46
1749 2144 0.841289 TTTTGTCGAACCTGGGTCCT 59.159 50.000 6.08 0.00 0.00 3.85
1750 2145 0.107831 TTTGTCGAACCTGGGTCCTG 59.892 55.000 6.08 0.00 0.00 3.86
1751 2146 0.761323 TTGTCGAACCTGGGTCCTGA 60.761 55.000 6.08 0.00 0.00 3.86
1753 2148 0.613777 GTCGAACCTGGGTCCTGATT 59.386 55.000 6.08 0.00 0.00 2.57
1755 2150 0.905357 CGAACCTGGGTCCTGATTCT 59.095 55.000 6.08 0.00 0.00 2.40
1756 2151 1.406069 CGAACCTGGGTCCTGATTCTG 60.406 57.143 6.08 0.00 0.00 3.02
1757 2152 1.630878 GAACCTGGGTCCTGATTCTGT 59.369 52.381 0.00 0.00 0.00 3.41
1758 2153 2.642171 ACCTGGGTCCTGATTCTGTA 57.358 50.000 0.00 0.00 0.00 2.74
1759 2154 2.915869 ACCTGGGTCCTGATTCTGTAA 58.084 47.619 0.00 0.00 0.00 2.41
1760 2155 3.464828 ACCTGGGTCCTGATTCTGTAAT 58.535 45.455 0.00 0.00 0.00 1.89
1761 2156 3.200825 ACCTGGGTCCTGATTCTGTAATG 59.799 47.826 0.00 0.00 0.00 1.90
1762 2157 3.209410 CTGGGTCCTGATTCTGTAATGC 58.791 50.000 0.00 0.00 0.00 3.56
1763 2158 2.092429 TGGGTCCTGATTCTGTAATGCC 60.092 50.000 0.00 0.00 0.00 4.40
1764 2159 2.576615 GGTCCTGATTCTGTAATGCCC 58.423 52.381 0.00 0.00 0.00 5.36
1765 2160 2.173569 GGTCCTGATTCTGTAATGCCCT 59.826 50.000 0.00 0.00 0.00 5.19
1766 2161 3.372025 GGTCCTGATTCTGTAATGCCCTT 60.372 47.826 0.00 0.00 0.00 3.95
1767 2162 3.879892 GTCCTGATTCTGTAATGCCCTTC 59.120 47.826 0.00 0.00 0.00 3.46
1768 2163 3.523157 TCCTGATTCTGTAATGCCCTTCA 59.477 43.478 0.00 0.00 0.00 3.02
1769 2164 4.018506 TCCTGATTCTGTAATGCCCTTCAA 60.019 41.667 0.00 0.00 0.00 2.69
1770 2165 4.891756 CCTGATTCTGTAATGCCCTTCAAT 59.108 41.667 0.00 0.00 0.00 2.57
1771 2166 6.064060 CCTGATTCTGTAATGCCCTTCAATA 58.936 40.000 0.00 0.00 0.00 1.90
1772 2167 6.206243 CCTGATTCTGTAATGCCCTTCAATAG 59.794 42.308 0.00 0.00 0.00 1.73
1791 2186 0.872388 GTTCGATTTGTTCCCGTGCT 59.128 50.000 0.00 0.00 0.00 4.40
1817 2213 3.792294 GCGATTAGCGATGTGAGAATTG 58.208 45.455 0.00 0.00 44.57 2.32
1827 2223 4.033358 CGATGTGAGAATTGCCAAGTAGAC 59.967 45.833 0.00 0.00 0.00 2.59
1829 2225 4.973168 TGTGAGAATTGCCAAGTAGACTT 58.027 39.130 0.00 0.00 36.45 3.01
1851 2247 3.057596 TGCAGTACTTACATTTTGCAGGC 60.058 43.478 0.00 0.00 36.71 4.85
1861 2257 0.179032 TTTTGCAGGCGTCCTCTGAA 60.179 50.000 0.00 0.00 34.36 3.02
1874 2271 4.321156 CGTCCTCTGAATCTCTGATCCATC 60.321 50.000 0.00 0.00 0.00 3.51
1879 2276 4.961099 TCTGAATCTCTGATCCATCTGTGT 59.039 41.667 0.00 0.00 0.00 3.72
1881 2278 4.202090 TGAATCTCTGATCCATCTGTGTCG 60.202 45.833 0.00 0.00 0.00 4.35
1886 2283 0.176680 GATCCATCTGTGTCGCTGGT 59.823 55.000 0.00 0.00 0.00 4.00
1888 2285 1.262417 TCCATCTGTGTCGCTGGTTA 58.738 50.000 0.00 0.00 0.00 2.85
1892 2289 1.324383 TCTGTGTCGCTGGTTAGTGA 58.676 50.000 0.00 0.00 40.96 3.41
1897 2294 0.815734 GTCGCTGGTTAGTGAGGCTA 59.184 55.000 0.00 0.00 43.64 3.93
1936 2334 1.488527 GCCATAGGCTAGTCGAAACG 58.511 55.000 0.00 0.00 46.69 3.60
1967 2365 3.791586 GCTCCAGGGGCCTCTGTC 61.792 72.222 30.85 15.69 33.14 3.51
1970 2368 2.693864 CCAGGGGCCTCTGTCCAT 60.694 66.667 30.85 0.00 38.32 3.41
1995 2393 0.804364 TCTCCGTGATTGCACAATGC 59.196 50.000 0.00 0.00 45.41 3.56
2015 2415 2.350522 CGATCCATATGGCAAGCTACC 58.649 52.381 17.58 0.00 34.44 3.18
2042 2442 8.273780 AGCATTGATTTAGTAAAAGTCCAGAG 57.726 34.615 0.00 0.00 0.00 3.35
2061 2461 1.158434 GCGTATTTGGAAACCACGGA 58.842 50.000 9.07 0.00 33.06 4.69
2080 2480 2.044946 GTCTGGGTGATGGGTGGC 60.045 66.667 0.00 0.00 0.00 5.01
2301 2703 4.082787 CGGTGAATCTGTGTTGCCTAATTT 60.083 41.667 0.00 0.00 0.00 1.82
2345 2747 2.353208 GCTGTCACCTAGTCTGTCTTGG 60.353 54.545 1.45 1.45 43.06 3.61
2419 2821 0.931005 GCTATCAACTAGTGGCGTGC 59.069 55.000 0.00 0.00 0.00 5.34
2428 2830 0.105964 TAGTGGCGTGCTGACTGTTT 59.894 50.000 7.15 0.00 0.00 2.83
2491 2893 3.649073 TGATTGTGTAGTTCGTGTCTGG 58.351 45.455 0.00 0.00 0.00 3.86
2532 2934 8.434589 TGGTCAGTTGATGGATGTATATATGA 57.565 34.615 0.00 0.00 0.00 2.15
2573 2980 6.039159 CCATTTGGCAGTTAATTGGTGTTTTT 59.961 34.615 0.00 0.00 0.00 1.94
2585 2992 5.688348 TTGGTGTTTTTGTTTTCGAATCG 57.312 34.783 0.00 0.00 0.00 3.34
2743 3154 5.779529 ATGCAGATGTTTCAGAGTTGTTT 57.220 34.783 0.00 0.00 0.00 2.83
2760 3171 9.566432 AGAGTTGTTTTAAGATTCTCAGTGATT 57.434 29.630 0.00 0.00 0.00 2.57
3149 3565 2.432510 AGAGTATGCTGAGCCACTTACC 59.567 50.000 9.73 0.00 0.00 2.85
3188 3604 2.036346 AGGTGATGCTGAAAAGGTTTGC 59.964 45.455 0.00 0.00 0.00 3.68
3355 3771 1.818674 GTAACCCCTAACCGTTCGAGA 59.181 52.381 0.00 0.00 0.00 4.04
3445 3862 4.528206 TGAAAGATGGAGTCTGAGCTTACA 59.472 41.667 0.00 0.00 37.23 2.41
3474 3891 3.119101 AGTCTGGGCGTCAGTATTACTTG 60.119 47.826 7.56 0.00 43.76 3.16
3480 3897 4.092968 GGGCGTCAGTATTACTTGAACAAG 59.907 45.833 12.22 12.22 43.79 3.16
3522 3939 6.616137 TGTTCTCCAGATAGTCTCCTAGAGTA 59.384 42.308 0.00 0.00 34.88 2.59
3531 3948 3.140623 GTCTCCTAGAGTATCCGTGTCC 58.859 54.545 0.00 0.00 33.66 4.02
3602 4019 2.432456 TTGCTGCCGTACTGCTCG 60.432 61.111 10.75 3.22 43.25 5.03
3630 4049 9.032624 ACTTGAATAGTTTTGAGTAGCTAGGTA 57.967 33.333 0.00 0.00 31.29 3.08
3717 6538 8.795341 CATCAGATTCAATTTCACATTTTCTCG 58.205 33.333 0.00 0.00 0.00 4.04
3807 6628 3.269592 TTCCTTTGAGACTGGTCCCTA 57.730 47.619 0.00 0.00 0.00 3.53
3831 6652 4.424061 TGTGATATTTCTTGCTGTGCAC 57.576 40.909 10.75 10.75 38.71 4.57
4146 6967 1.134367 CTGCCTGATGCCAGACAATTG 59.866 52.381 3.24 3.24 43.02 2.32
4300 7121 2.916934 ACCAAAGTCCTGCCAAGGTATA 59.083 45.455 0.00 0.00 44.82 1.47
4301 7122 3.279434 CCAAAGTCCTGCCAAGGTATAC 58.721 50.000 0.00 0.00 44.82 1.47
4302 7123 3.054361 CCAAAGTCCTGCCAAGGTATACT 60.054 47.826 2.25 0.00 44.82 2.12
4303 7124 3.914426 AAGTCCTGCCAAGGTATACTG 57.086 47.619 2.25 0.00 44.82 2.74
4304 7125 2.834113 AGTCCTGCCAAGGTATACTGT 58.166 47.619 2.25 0.00 44.82 3.55
4305 7126 2.766828 AGTCCTGCCAAGGTATACTGTC 59.233 50.000 2.25 0.00 44.82 3.51
4306 7127 2.500098 GTCCTGCCAAGGTATACTGTCA 59.500 50.000 2.25 0.00 44.82 3.58
4307 7128 2.766263 TCCTGCCAAGGTATACTGTCAG 59.234 50.000 2.25 0.00 44.82 3.51
4311 7132 3.580895 TGCCAAGGTATACTGTCAGACAA 59.419 43.478 6.91 0.00 0.00 3.18
4316 7137 6.481313 CCAAGGTATACTGTCAGACAATCATG 59.519 42.308 6.91 0.00 0.00 3.07
4340 7161 6.183361 TGTCCAACCATATCACTGAATCCTAG 60.183 42.308 0.00 0.00 0.00 3.02
4367 7188 5.533154 TCGAAATTAACATTTCACACCCACT 59.467 36.000 8.11 0.00 46.17 4.00
4378 7199 2.154462 CACACCCACTCCATTTGTCTC 58.846 52.381 0.00 0.00 0.00 3.36
4392 7213 6.611236 TCCATTTGTCTCTGTAGGATGTATCA 59.389 38.462 0.00 0.00 0.00 2.15
4416 7237 1.677217 GCTTCAGTGTCCATGAGACCC 60.677 57.143 10.60 1.48 45.68 4.46
4472 7293 3.611766 AACAGAAGGGAACTACGGATG 57.388 47.619 0.00 0.00 42.68 3.51
4473 7294 1.831736 ACAGAAGGGAACTACGGATGG 59.168 52.381 0.00 0.00 42.68 3.51
4727 7549 1.190984 CGAGATCGCCATGATTGTTCG 59.809 52.381 0.00 0.00 37.47 3.95
4779 7613 4.019321 AGAGTAAGCTGGAGGTAAAATGCA 60.019 41.667 0.00 0.00 0.00 3.96
4780 7614 4.265073 AGTAAGCTGGAGGTAAAATGCAG 58.735 43.478 0.00 0.00 38.97 4.41
4781 7615 2.887151 AGCTGGAGGTAAAATGCAGT 57.113 45.000 0.00 0.00 38.29 4.40
4782 7616 4.301072 AAGCTGGAGGTAAAATGCAGTA 57.699 40.909 0.00 0.00 38.29 2.74
4783 7617 4.301072 AGCTGGAGGTAAAATGCAGTAA 57.699 40.909 0.00 0.00 38.29 2.24
4784 7618 4.662278 AGCTGGAGGTAAAATGCAGTAAA 58.338 39.130 0.00 0.00 38.29 2.01
4785 7619 5.076873 AGCTGGAGGTAAAATGCAGTAAAA 58.923 37.500 0.00 0.00 38.29 1.52
4786 7620 5.538433 AGCTGGAGGTAAAATGCAGTAAAAA 59.462 36.000 0.00 0.00 38.29 1.94
4787 7621 6.211384 AGCTGGAGGTAAAATGCAGTAAAAAT 59.789 34.615 0.00 0.00 38.29 1.82
4788 7622 7.396055 AGCTGGAGGTAAAATGCAGTAAAAATA 59.604 33.333 0.00 0.00 38.29 1.40
4789 7623 7.702348 GCTGGAGGTAAAATGCAGTAAAAATAG 59.298 37.037 0.00 0.00 38.29 1.73
4790 7624 8.062065 TGGAGGTAAAATGCAGTAAAAATAGG 57.938 34.615 0.00 0.00 0.00 2.57
4791 7625 6.978659 GGAGGTAAAATGCAGTAAAAATAGGC 59.021 38.462 0.00 0.00 0.00 3.93
4792 7626 6.560711 AGGTAAAATGCAGTAAAAATAGGCG 58.439 36.000 0.00 0.00 0.00 5.52
4793 7627 6.152154 AGGTAAAATGCAGTAAAAATAGGCGT 59.848 34.615 0.00 0.00 0.00 5.68
4794 7628 6.809689 GGTAAAATGCAGTAAAAATAGGCGTT 59.190 34.615 0.00 0.00 35.38 4.84
4795 7629 6.704512 AAAATGCAGTAAAAATAGGCGTTG 57.295 33.333 0.00 0.00 34.25 4.10
4796 7630 5.385509 AATGCAGTAAAAATAGGCGTTGT 57.614 34.783 0.00 0.00 32.88 3.32
4797 7631 6.503589 AATGCAGTAAAAATAGGCGTTGTA 57.496 33.333 0.00 0.00 32.88 2.41
4798 7632 5.285798 TGCAGTAAAAATAGGCGTTGTAC 57.714 39.130 0.00 0.00 0.00 2.90
4799 7633 4.755629 TGCAGTAAAAATAGGCGTTGTACA 59.244 37.500 0.00 0.00 0.00 2.90
4800 7634 5.238868 TGCAGTAAAAATAGGCGTTGTACAA 59.761 36.000 3.59 3.59 0.00 2.41
4803 7637 7.357777 GCAGTAAAAATAGGCGTTGTACAAAAC 60.358 37.037 10.51 5.21 0.00 2.43
4819 7653 0.526739 AAACGTTTGGAAGCCGTTGC 60.527 50.000 13.81 0.00 43.32 4.17
4841 7675 0.179936 AGGGATGTAAGCAGCAGAGC 59.820 55.000 0.00 0.00 31.62 4.09
4858 7692 3.869623 GCAGGAGCTCTGGATTTCA 57.130 52.632 14.64 0.00 43.54 2.69
4859 7693 1.377536 GCAGGAGCTCTGGATTTCAC 58.622 55.000 14.64 0.00 43.54 3.18
4860 7694 2.016096 GCAGGAGCTCTGGATTTCACC 61.016 57.143 14.64 0.00 43.54 4.02
4861 7695 0.915364 AGGAGCTCTGGATTTCACCC 59.085 55.000 14.64 0.00 0.00 4.61
4862 7696 0.915364 GGAGCTCTGGATTTCACCCT 59.085 55.000 14.64 0.00 0.00 4.34
4863 7697 1.283321 GGAGCTCTGGATTTCACCCTT 59.717 52.381 14.64 0.00 0.00 3.95
4864 7698 2.363683 GAGCTCTGGATTTCACCCTTG 58.636 52.381 6.43 0.00 0.00 3.61
4865 7699 1.707427 AGCTCTGGATTTCACCCTTGT 59.293 47.619 0.00 0.00 0.00 3.16
4866 7700 2.087646 GCTCTGGATTTCACCCTTGTC 58.912 52.381 0.00 0.00 0.00 3.18
4867 7701 2.290577 GCTCTGGATTTCACCCTTGTCT 60.291 50.000 0.00 0.00 0.00 3.41
4868 7702 3.604582 CTCTGGATTTCACCCTTGTCTC 58.395 50.000 0.00 0.00 0.00 3.36
4869 7703 2.978978 TCTGGATTTCACCCTTGTCTCA 59.021 45.455 0.00 0.00 0.00 3.27
4870 7704 3.394274 TCTGGATTTCACCCTTGTCTCAA 59.606 43.478 0.00 0.00 0.00 3.02
4871 7705 3.486383 TGGATTTCACCCTTGTCTCAAC 58.514 45.455 0.00 0.00 0.00 3.18
4872 7706 2.484264 GGATTTCACCCTTGTCTCAACG 59.516 50.000 0.00 0.00 0.00 4.10
4873 7707 2.992124 TTTCACCCTTGTCTCAACGA 57.008 45.000 0.00 0.00 0.00 3.85
4874 7708 3.485463 TTTCACCCTTGTCTCAACGAT 57.515 42.857 0.00 0.00 0.00 3.73
4875 7709 3.485463 TTCACCCTTGTCTCAACGATT 57.515 42.857 0.00 0.00 0.00 3.34
4876 7710 4.610605 TTCACCCTTGTCTCAACGATTA 57.389 40.909 0.00 0.00 0.00 1.75
4877 7711 3.921677 TCACCCTTGTCTCAACGATTAC 58.078 45.455 0.00 0.00 0.00 1.89
4878 7712 3.322541 TCACCCTTGTCTCAACGATTACA 59.677 43.478 0.00 0.00 0.00 2.41
4879 7713 3.432252 CACCCTTGTCTCAACGATTACAC 59.568 47.826 0.00 0.00 0.00 2.90
4880 7714 3.000727 CCCTTGTCTCAACGATTACACC 58.999 50.000 0.00 0.00 0.00 4.16
4881 7715 3.306780 CCCTTGTCTCAACGATTACACCT 60.307 47.826 0.00 0.00 0.00 4.00
4882 7716 4.315803 CCTTGTCTCAACGATTACACCTT 58.684 43.478 0.00 0.00 0.00 3.50
4883 7717 4.755123 CCTTGTCTCAACGATTACACCTTT 59.245 41.667 0.00 0.00 0.00 3.11
4884 7718 5.107065 CCTTGTCTCAACGATTACACCTTTC 60.107 44.000 0.00 0.00 0.00 2.62
4885 7719 4.312443 TGTCTCAACGATTACACCTTTCC 58.688 43.478 0.00 0.00 0.00 3.13
4886 7720 4.039973 TGTCTCAACGATTACACCTTTCCT 59.960 41.667 0.00 0.00 0.00 3.36
4887 7721 4.389077 GTCTCAACGATTACACCTTTCCTG 59.611 45.833 0.00 0.00 0.00 3.86
4888 7722 4.039973 TCTCAACGATTACACCTTTCCTGT 59.960 41.667 0.00 0.00 0.00 4.00
4889 7723 4.312443 TCAACGATTACACCTTTCCTGTC 58.688 43.478 0.00 0.00 0.00 3.51
4890 7724 4.039973 TCAACGATTACACCTTTCCTGTCT 59.960 41.667 0.00 0.00 0.00 3.41
4891 7725 3.926616 ACGATTACACCTTTCCTGTCTG 58.073 45.455 0.00 0.00 0.00 3.51
4892 7726 2.673368 CGATTACACCTTTCCTGTCTGC 59.327 50.000 0.00 0.00 0.00 4.26
4893 7727 3.674997 GATTACACCTTTCCTGTCTGCA 58.325 45.455 0.00 0.00 0.00 4.41
4894 7728 3.569194 TTACACCTTTCCTGTCTGCAA 57.431 42.857 0.00 0.00 0.00 4.08
4895 7729 2.664402 ACACCTTTCCTGTCTGCAAT 57.336 45.000 0.00 0.00 0.00 3.56
4896 7730 2.233271 ACACCTTTCCTGTCTGCAATG 58.767 47.619 0.00 0.00 0.00 2.82
4897 7731 2.158623 ACACCTTTCCTGTCTGCAATGA 60.159 45.455 0.00 0.00 0.00 2.57
4898 7732 2.227388 CACCTTTCCTGTCTGCAATGAC 59.773 50.000 0.00 0.00 37.47 3.06
4899 7733 2.158623 ACCTTTCCTGTCTGCAATGACA 60.159 45.455 8.36 8.36 43.72 3.58
4900 7734 3.087031 CCTTTCCTGTCTGCAATGACAT 58.913 45.455 9.03 0.00 44.66 3.06
4901 7735 3.119602 CCTTTCCTGTCTGCAATGACATG 60.120 47.826 9.03 7.06 44.66 3.21
4935 7824 5.847515 GTGGTTAACTTAATGCACGTGTAAC 59.152 40.000 18.38 13.94 0.00 2.50
4939 7828 4.725556 ACTTAATGCACGTGTAACTGTG 57.274 40.909 18.38 6.46 41.78 3.66
4940 7829 4.124238 ACTTAATGCACGTGTAACTGTGT 58.876 39.130 18.38 7.08 41.23 3.72
4943 7832 2.232756 TGCACGTGTAACTGTGTGAT 57.767 45.000 18.38 0.00 41.23 3.06
4960 7849 3.689161 TGTGATTGTACTGCAGCCAATAC 59.311 43.478 24.32 21.21 0.00 1.89
5065 7971 2.187100 TGGAATTTGCCCTTTGATCCC 58.813 47.619 0.00 0.00 0.00 3.85
5068 7974 0.614415 ATTTGCCCTTTGATCCCGCA 60.614 50.000 0.00 0.00 0.00 5.69
5094 8000 0.733729 GACGATGTAGCAGACGAGGT 59.266 55.000 0.00 0.00 0.00 3.85
5095 8001 1.938577 GACGATGTAGCAGACGAGGTA 59.061 52.381 0.00 0.00 0.00 3.08
5096 8002 1.669779 ACGATGTAGCAGACGAGGTAC 59.330 52.381 0.00 0.00 41.55 3.34
5124 8030 1.272147 GCATCACCTTCTTCCCTGGTT 60.272 52.381 0.00 0.00 30.72 3.67
5133 8039 3.611025 TCTTCCCTGGTTTGAATTGGT 57.389 42.857 0.00 0.00 0.00 3.67
5154 8060 4.641989 GGTGCTCATACTCAAATGGTGATT 59.358 41.667 0.00 0.00 35.07 2.57
5167 8073 6.097270 TCAAATGGTGATTTTCATCCATCCTC 59.903 38.462 10.15 0.00 37.32 3.71
5198 8104 1.001641 CCAGGAGTCCAGGGCAAAG 60.002 63.158 12.87 0.00 0.00 2.77
5270 8176 0.325933 CTGCATGACTCTTGTCCCCA 59.674 55.000 0.00 0.00 42.28 4.96
5279 8185 2.853542 TTGTCCCCAGCTGCTCCA 60.854 61.111 8.66 0.00 0.00 3.86
5297 8203 1.476085 CCAGCTCGATCACTTCTCTGT 59.524 52.381 0.00 0.00 0.00 3.41
5313 8219 1.699083 TCTGTTCATCCTGTGCTTGGA 59.301 47.619 0.00 0.00 38.06 3.53
5318 8224 0.035725 CATCCTGTGCTTGGAGCTCA 60.036 55.000 17.19 0.00 42.97 4.26
5320 8226 0.251354 TCCTGTGCTTGGAGCTCATC 59.749 55.000 17.19 0.00 42.82 2.92
5408 8343 5.108027 CCAAATCCAACGTTTCGATCAAAAC 60.108 40.000 0.00 0.00 36.09 2.43
5417 8352 5.935448 GTTTCGATCAAAACGGACAAAAA 57.065 34.783 0.00 0.00 30.16 1.94
5435 8370 1.091537 AAATATGGTCCAACGCACCG 58.908 50.000 0.00 0.00 36.61 4.94
5451 8386 3.496131 CGACGCAAACGGATGGGG 61.496 66.667 10.64 0.00 46.04 4.96
5463 8398 1.884928 CGGATGGGGGTTCGTTTTCTT 60.885 52.381 0.00 0.00 0.00 2.52
5464 8399 1.816835 GGATGGGGGTTCGTTTTCTTC 59.183 52.381 0.00 0.00 0.00 2.87
5471 8406 1.509703 GTTCGTTTTCTTCTCGCCCT 58.490 50.000 0.00 0.00 0.00 5.19
5472 8407 1.871676 GTTCGTTTTCTTCTCGCCCTT 59.128 47.619 0.00 0.00 0.00 3.95
5473 8408 3.062042 GTTCGTTTTCTTCTCGCCCTTA 58.938 45.455 0.00 0.00 0.00 2.69
5509 8444 1.167781 AATTTGGGTCGCGTTTCCGT 61.168 50.000 5.77 0.00 36.15 4.69
5520 8455 0.316689 CGTTTCCGTCAAAAAGCGCT 60.317 50.000 2.64 2.64 0.00 5.92
5555 8490 3.017581 CCCTTGTCCTCCCCCTGG 61.018 72.222 0.00 0.00 0.00 4.45
5556 8491 2.204151 CCTTGTCCTCCCCCTGGT 60.204 66.667 0.00 0.00 0.00 4.00
5561 8496 4.393778 TCCTCCCCCTGGTCCGAC 62.394 72.222 0.00 0.00 0.00 4.79
5598 8533 0.039618 TGCCATTTCCCCTTCTCACC 59.960 55.000 0.00 0.00 0.00 4.02
5652 8587 3.423154 CACCGCCTCAAAGGACGC 61.423 66.667 0.00 0.00 37.67 5.19
5655 8590 2.357517 CGCCTCAAAGGACGCTGT 60.358 61.111 0.00 0.00 37.67 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.709125 TACAAGCGTGCCTCTGCGTT 62.709 55.000 0.00 0.00 41.78 4.84
35 36 3.220999 TACAAGCGTGCCTCTGCGT 62.221 57.895 0.00 0.00 41.78 5.24
57 58 4.085415 GCGTTACGTTTATTCTATCGGGTG 60.085 45.833 6.63 0.00 0.00 4.61
66 67 7.450627 AGTAAACAGATGCGTTACGTTTATTC 58.549 34.615 6.63 0.00 35.27 1.75
73 74 3.247442 TGGAGTAAACAGATGCGTTACG 58.753 45.455 0.00 0.00 0.00 3.18
90 99 5.171476 CAAATGACTGTACTACCACTGGAG 58.829 45.833 0.71 0.00 0.00 3.86
91 100 4.562757 GCAAATGACTGTACTACCACTGGA 60.563 45.833 0.71 0.00 0.00 3.86
124 133 6.200286 CGTATACTATTTTACAGTGGCTGTGG 59.800 42.308 11.57 0.00 45.01 4.17
163 172 0.741221 GAGGGATCACTGTTGCCGTC 60.741 60.000 0.00 0.00 0.00 4.79
211 220 0.817654 TGCTACTACTGCACGATGCT 59.182 50.000 10.54 0.00 45.31 3.79
221 230 2.280823 GAACGCCCGCTGCTACTACT 62.281 60.000 0.00 0.00 38.05 2.57
241 250 4.475051 TGAAATTGAATGCCCAAGGATG 57.525 40.909 0.00 0.00 0.00 3.51
242 251 4.533311 ACTTGAAATTGAATGCCCAAGGAT 59.467 37.500 14.48 0.00 36.33 3.24
243 252 3.903090 ACTTGAAATTGAATGCCCAAGGA 59.097 39.130 14.48 0.00 36.33 3.36
244 253 4.020839 AGACTTGAAATTGAATGCCCAAGG 60.021 41.667 14.48 0.00 36.33 3.61
245 254 5.143376 AGACTTGAAATTGAATGCCCAAG 57.857 39.130 10.72 10.72 37.57 3.61
246 255 4.021192 GGAGACTTGAAATTGAATGCCCAA 60.021 41.667 0.00 0.00 0.00 4.12
247 256 3.511146 GGAGACTTGAAATTGAATGCCCA 59.489 43.478 0.00 0.00 0.00 5.36
248 257 3.428045 CGGAGACTTGAAATTGAATGCCC 60.428 47.826 0.00 0.00 0.00 5.36
249 258 3.440173 TCGGAGACTTGAAATTGAATGCC 59.560 43.478 0.00 0.00 0.00 4.40
250 259 4.154918 ACTCGGAGACTTGAAATTGAATGC 59.845 41.667 12.86 0.00 0.00 3.56
258 267 3.131396 GAGCAAACTCGGAGACTTGAAA 58.869 45.455 20.86 0.00 32.04 2.69
265 274 1.266178 TGATGGAGCAAACTCGGAGA 58.734 50.000 12.86 0.00 44.48 3.71
290 299 0.108992 TTCCATACGCAGTCACGTCC 60.109 55.000 0.00 0.00 44.43 4.79
299 308 2.343101 CTCGTTCCTTTTCCATACGCA 58.657 47.619 0.00 0.00 32.65 5.24
366 375 1.377202 CCGTCCCTGTCACAATGGG 60.377 63.158 0.00 0.00 42.20 4.00
379 388 1.952296 ACCGTATGTCATCTACCGTCC 59.048 52.381 0.00 0.00 0.00 4.79
489 526 3.737172 GCACCGGAAATGCTGCGT 61.737 61.111 9.46 0.00 40.08 5.24
502 539 1.206578 CATTTGACACGACGGCACC 59.793 57.895 0.00 0.00 0.00 5.01
535 572 0.179006 GTTGGGGGATCATCAGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
550 587 1.398958 CCCCAGTGGTTGGTTGTTGG 61.399 60.000 8.74 0.00 46.25 3.77
565 602 3.059386 GGCGAAATTCGTGCCCCA 61.059 61.111 17.05 0.00 42.81 4.96
963 1309 1.589196 GCTCCGATTCCGAGAACCG 60.589 63.158 6.25 0.00 38.22 4.44
967 1313 3.217017 CCCGCTCCGATTCCGAGA 61.217 66.667 6.25 0.00 38.22 4.04
968 1314 4.951963 GCCCGCTCCGATTCCGAG 62.952 72.222 0.00 0.00 38.22 4.63
995 1341 3.157217 ATCAGAGCGCCCATCGGAC 62.157 63.158 2.29 0.00 38.94 4.79
1329 1682 1.754226 CGAAGGAAGGAGGAGGAAGAG 59.246 57.143 0.00 0.00 0.00 2.85
1364 1722 4.514577 ATGCGACCGGGAGAAGCG 62.515 66.667 6.32 0.24 0.00 4.68
1461 1822 4.501571 CGATAACCATCAGAAATCCGGAGT 60.502 45.833 11.34 3.58 0.00 3.85
1462 1823 3.990469 CGATAACCATCAGAAATCCGGAG 59.010 47.826 11.34 0.00 0.00 4.63
1463 1824 3.244078 CCGATAACCATCAGAAATCCGGA 60.244 47.826 6.61 6.61 0.00 5.14
1464 1825 3.067106 CCGATAACCATCAGAAATCCGG 58.933 50.000 0.00 0.00 0.00 5.14
1465 1826 3.728845 ACCGATAACCATCAGAAATCCG 58.271 45.455 0.00 0.00 0.00 4.18
1466 1827 3.741344 CGACCGATAACCATCAGAAATCC 59.259 47.826 0.00 0.00 0.00 3.01
1467 1828 3.741344 CCGACCGATAACCATCAGAAATC 59.259 47.826 0.00 0.00 0.00 2.17
1468 1829 3.134081 ACCGACCGATAACCATCAGAAAT 59.866 43.478 0.00 0.00 0.00 2.17
1475 1836 3.528532 GAGAAAACCGACCGATAACCAT 58.471 45.455 0.00 0.00 0.00 3.55
1479 1840 2.728846 CGACGAGAAAACCGACCGATAA 60.729 50.000 0.00 0.00 0.00 1.75
1480 1841 1.202065 CGACGAGAAAACCGACCGATA 60.202 52.381 0.00 0.00 0.00 2.92
1483 1844 2.084681 CCGACGAGAAAACCGACCG 61.085 63.158 0.00 0.00 0.00 4.79
1485 1846 2.378084 GGCCGACGAGAAAACCGAC 61.378 63.158 0.00 0.00 0.00 4.79
1487 1848 2.356553 TGGCCGACGAGAAAACCG 60.357 61.111 0.00 0.00 0.00 4.44
1504 1865 3.374402 CACTCACGGAGCCTCGGT 61.374 66.667 0.00 0.00 32.04 4.69
1505 1866 4.803426 GCACTCACGGAGCCTCGG 62.803 72.222 0.00 0.00 32.04 4.63
1506 1867 4.803426 GGCACTCACGGAGCCTCG 62.803 72.222 0.00 0.00 46.05 4.63
1511 1872 3.449227 TAGGCGGCACTCACGGAG 61.449 66.667 13.08 0.03 35.52 4.63
1512 1873 3.755628 GTAGGCGGCACTCACGGA 61.756 66.667 13.08 0.00 0.00 4.69
1513 1874 3.989698 CTGTAGGCGGCACTCACGG 62.990 68.421 13.08 4.62 0.00 4.94
1514 1875 1.929806 TACTGTAGGCGGCACTCACG 61.930 60.000 13.08 4.31 0.00 4.35
1515 1876 0.179134 CTACTGTAGGCGGCACTCAC 60.179 60.000 13.08 3.85 0.00 3.51
1516 1877 0.611062 ACTACTGTAGGCGGCACTCA 60.611 55.000 18.38 6.17 0.00 3.41
1517 1878 0.531200 AACTACTGTAGGCGGCACTC 59.469 55.000 18.38 1.08 0.00 3.51
1518 1879 0.974383 AAACTACTGTAGGCGGCACT 59.026 50.000 18.38 0.00 0.00 4.40
1519 1880 1.067071 AGAAACTACTGTAGGCGGCAC 60.067 52.381 18.38 8.19 0.00 5.01
1520 1881 1.263356 AGAAACTACTGTAGGCGGCA 58.737 50.000 18.38 0.00 0.00 5.69
1523 1884 3.754188 ACGTAGAAACTACTGTAGGCG 57.246 47.619 18.38 13.50 0.00 5.52
1527 1888 6.128282 CCGGAAACTACGTAGAAACTACTGTA 60.128 42.308 28.74 0.00 0.00 2.74
1528 1889 5.335191 CCGGAAACTACGTAGAAACTACTGT 60.335 44.000 28.74 0.00 0.00 3.55
1529 1890 5.091431 CCGGAAACTACGTAGAAACTACTG 58.909 45.833 28.74 15.86 0.00 2.74
1530 1891 4.379918 GCCGGAAACTACGTAGAAACTACT 60.380 45.833 28.74 1.40 0.00 2.57
1531 1892 3.854240 GCCGGAAACTACGTAGAAACTAC 59.146 47.826 28.74 11.96 0.00 2.73
1570 1931 2.221299 TGGAAACAGGGGGAGACCG 61.221 63.158 0.00 0.00 44.86 4.79
1571 1932 3.916184 TGGAAACAGGGGGAGACC 58.084 61.111 0.00 0.00 43.61 3.85
1585 1946 3.754219 TGGATCAAATTCCACCATGGA 57.246 42.857 21.47 0.00 46.61 3.41
1594 1955 4.950205 AGCATGGGAATGGATCAAATTC 57.050 40.909 10.47 10.47 34.00 2.17
1595 1956 5.045432 ACAAAGCATGGGAATGGATCAAATT 60.045 36.000 0.00 0.00 0.00 1.82
1596 1957 4.472108 ACAAAGCATGGGAATGGATCAAAT 59.528 37.500 0.00 0.00 0.00 2.32
1603 1964 0.457035 CGGACAAAGCATGGGAATGG 59.543 55.000 0.00 0.00 0.00 3.16
1605 1966 1.322538 GCCGGACAAAGCATGGGAAT 61.323 55.000 5.05 0.00 0.00 3.01
1608 1969 1.978617 AAGCCGGACAAAGCATGGG 60.979 57.895 5.05 0.00 0.00 4.00
1629 1990 2.256445 AAAAATCGGGCATCGTTTCG 57.744 45.000 0.00 0.00 40.32 3.46
1635 1996 0.310854 CGGCCTAAAAATCGGGCATC 59.689 55.000 0.00 0.00 46.87 3.91
1638 1999 3.116463 CCGGCCTAAAAATCGGGC 58.884 61.111 0.00 0.00 44.59 6.13
1641 2002 2.041251 TTACCCCGGCCTAAAAATCG 57.959 50.000 0.00 0.00 0.00 3.34
1642 2003 2.551032 CGATTACCCCGGCCTAAAAATC 59.449 50.000 0.00 3.08 0.00 2.17
1643 2004 2.092267 ACGATTACCCCGGCCTAAAAAT 60.092 45.455 0.00 0.00 0.00 1.82
1644 2005 1.281577 ACGATTACCCCGGCCTAAAAA 59.718 47.619 0.00 0.00 0.00 1.94
1645 2006 0.911053 ACGATTACCCCGGCCTAAAA 59.089 50.000 0.00 0.00 0.00 1.52
1647 2008 2.126951 GACGATTACCCCGGCCTAA 58.873 57.895 0.00 0.00 0.00 2.69
1648 2009 3.860681 GACGATTACCCCGGCCTA 58.139 61.111 0.00 0.00 0.00 3.93
1651 2012 0.393402 AAAAGGACGATTACCCCGGC 60.393 55.000 0.00 0.00 0.00 6.13
1652 2013 1.660167 GAAAAGGACGATTACCCCGG 58.340 55.000 0.00 0.00 0.00 5.73
1654 2015 2.678471 TCGAAAAGGACGATTACCCC 57.322 50.000 0.00 0.00 34.85 4.95
1655 2016 3.853475 TCTTCGAAAAGGACGATTACCC 58.147 45.455 0.00 0.00 39.45 3.69
1656 2017 5.851047 TTTCTTCGAAAAGGACGATTACC 57.149 39.130 0.00 0.00 39.45 2.85
1681 2076 9.143631 GCAACATAGAATTGAAGTAAGCATTTT 57.856 29.630 0.00 0.00 0.00 1.82
1682 2077 8.526147 AGCAACATAGAATTGAAGTAAGCATTT 58.474 29.630 0.00 0.00 0.00 2.32
1686 2081 7.148340 ACAGAGCAACATAGAATTGAAGTAAGC 60.148 37.037 0.00 0.00 0.00 3.09
1688 2083 7.334421 GGACAGAGCAACATAGAATTGAAGTAA 59.666 37.037 0.00 0.00 0.00 2.24
1702 2097 4.206375 TGAATTTTGAGGACAGAGCAACA 58.794 39.130 0.00 0.00 0.00 3.33
1708 2103 7.587037 AAAACAGATGAATTTTGAGGACAGA 57.413 32.000 0.00 0.00 0.00 3.41
1710 2105 7.555087 ACAAAAACAGATGAATTTTGAGGACA 58.445 30.769 22.78 0.00 43.36 4.02
1711 2106 7.096477 CGACAAAAACAGATGAATTTTGAGGAC 60.096 37.037 22.78 14.59 43.36 3.85
1712 2107 6.917477 CGACAAAAACAGATGAATTTTGAGGA 59.083 34.615 22.78 0.00 43.36 3.71
1713 2108 6.917477 TCGACAAAAACAGATGAATTTTGAGG 59.083 34.615 22.78 16.85 43.36 3.86
1715 2110 7.221838 GGTTCGACAAAAACAGATGAATTTTGA 59.778 33.333 22.78 8.61 43.36 2.69
1716 2111 7.222611 AGGTTCGACAAAAACAGATGAATTTTG 59.777 33.333 18.23 18.23 45.14 2.44
1717 2112 7.222611 CAGGTTCGACAAAAACAGATGAATTTT 59.777 33.333 0.00 0.00 0.00 1.82
1718 2113 6.697019 CAGGTTCGACAAAAACAGATGAATTT 59.303 34.615 0.00 0.00 0.00 1.82
1726 2121 2.021457 ACCCAGGTTCGACAAAAACAG 58.979 47.619 0.00 0.00 0.00 3.16
1729 2124 1.213430 AGGACCCAGGTTCGACAAAAA 59.787 47.619 0.00 0.00 0.00 1.94
1736 2131 0.905357 AGAATCAGGACCCAGGTTCG 59.095 55.000 0.00 0.00 0.00 3.95
1740 2135 3.813443 CATTACAGAATCAGGACCCAGG 58.187 50.000 0.00 0.00 0.00 4.45
1741 2136 3.209410 GCATTACAGAATCAGGACCCAG 58.791 50.000 0.00 0.00 0.00 4.45
1742 2137 2.092429 GGCATTACAGAATCAGGACCCA 60.092 50.000 0.00 0.00 0.00 4.51
1743 2138 2.576615 GGCATTACAGAATCAGGACCC 58.423 52.381 0.00 0.00 0.00 4.46
1744 2139 2.173569 AGGGCATTACAGAATCAGGACC 59.826 50.000 0.00 0.00 0.00 4.46
1745 2140 3.567478 AGGGCATTACAGAATCAGGAC 57.433 47.619 0.00 0.00 0.00 3.85
1746 2141 3.523157 TGAAGGGCATTACAGAATCAGGA 59.477 43.478 0.00 0.00 0.00 3.86
1747 2142 3.889815 TGAAGGGCATTACAGAATCAGG 58.110 45.455 0.00 0.00 0.00 3.86
1749 2144 6.662755 ACTATTGAAGGGCATTACAGAATCA 58.337 36.000 0.00 0.00 0.00 2.57
1750 2145 7.519008 CGAACTATTGAAGGGCATTACAGAATC 60.519 40.741 0.00 0.00 0.00 2.52
1751 2146 6.260936 CGAACTATTGAAGGGCATTACAGAAT 59.739 38.462 0.00 0.00 0.00 2.40
1753 2148 5.105106 TCGAACTATTGAAGGGCATTACAGA 60.105 40.000 0.00 0.00 0.00 3.41
1755 2150 5.092554 TCGAACTATTGAAGGGCATTACA 57.907 39.130 0.00 0.00 0.00 2.41
1756 2151 6.619801 AATCGAACTATTGAAGGGCATTAC 57.380 37.500 0.00 0.00 0.00 1.89
1757 2152 6.601613 ACAAATCGAACTATTGAAGGGCATTA 59.398 34.615 9.62 0.00 0.00 1.90
1758 2153 5.418840 ACAAATCGAACTATTGAAGGGCATT 59.581 36.000 9.62 0.00 0.00 3.56
1759 2154 4.949856 ACAAATCGAACTATTGAAGGGCAT 59.050 37.500 9.62 0.00 0.00 4.40
1760 2155 4.331968 ACAAATCGAACTATTGAAGGGCA 58.668 39.130 9.62 0.00 0.00 5.36
1761 2156 4.965119 ACAAATCGAACTATTGAAGGGC 57.035 40.909 9.62 0.00 0.00 5.19
1762 2157 5.163652 GGGAACAAATCGAACTATTGAAGGG 60.164 44.000 9.62 0.00 0.00 3.95
1763 2158 5.447279 CGGGAACAAATCGAACTATTGAAGG 60.447 44.000 9.62 0.00 0.00 3.46
1764 2159 5.121768 ACGGGAACAAATCGAACTATTGAAG 59.878 40.000 9.62 0.00 0.00 3.02
1765 2160 4.998672 ACGGGAACAAATCGAACTATTGAA 59.001 37.500 9.62 0.00 0.00 2.69
1766 2161 4.390603 CACGGGAACAAATCGAACTATTGA 59.609 41.667 9.62 0.00 0.00 2.57
1767 2162 4.647964 CACGGGAACAAATCGAACTATTG 58.352 43.478 0.00 0.00 0.00 1.90
1768 2163 3.126343 GCACGGGAACAAATCGAACTATT 59.874 43.478 0.00 0.00 0.00 1.73
1769 2164 2.676342 GCACGGGAACAAATCGAACTAT 59.324 45.455 0.00 0.00 0.00 2.12
1770 2165 2.070783 GCACGGGAACAAATCGAACTA 58.929 47.619 0.00 0.00 0.00 2.24
1771 2166 0.872388 GCACGGGAACAAATCGAACT 59.128 50.000 0.00 0.00 0.00 3.01
1772 2167 0.872388 AGCACGGGAACAAATCGAAC 59.128 50.000 0.00 0.00 0.00 3.95
1791 2186 3.066203 TCTCACATCGCTAATCGCAGTAA 59.934 43.478 0.00 0.00 39.08 2.24
1827 2223 5.156355 CCTGCAAAATGTAAGTACTGCAAG 58.844 41.667 0.00 0.00 39.15 4.01
1829 2225 3.057596 GCCTGCAAAATGTAAGTACTGCA 60.058 43.478 0.00 0.00 37.46 4.41
1831 2227 3.188460 ACGCCTGCAAAATGTAAGTACTG 59.812 43.478 0.00 0.00 0.00 2.74
1835 2231 1.539827 GGACGCCTGCAAAATGTAAGT 59.460 47.619 0.00 0.00 0.00 2.24
1839 2235 0.250901 AGAGGACGCCTGCAAAATGT 60.251 50.000 2.98 0.00 31.76 2.71
1851 2247 2.954989 TGGATCAGAGATTCAGAGGACG 59.045 50.000 0.00 0.00 0.00 4.79
1861 2257 2.035704 GCGACACAGATGGATCAGAGAT 59.964 50.000 0.00 0.00 0.00 2.75
1874 2271 1.670087 CCTCACTAACCAGCGACACAG 60.670 57.143 0.00 0.00 0.00 3.66
1879 2276 1.776662 ATAGCCTCACTAACCAGCGA 58.223 50.000 0.00 0.00 33.57 4.93
1881 2278 4.402056 TGTTATAGCCTCACTAACCAGC 57.598 45.455 0.00 0.00 33.57 4.85
1886 2283 3.650942 CCCCCATGTTATAGCCTCACTAA 59.349 47.826 0.00 0.00 33.57 2.24
1888 2285 2.057922 CCCCCATGTTATAGCCTCACT 58.942 52.381 0.00 0.00 0.00 3.41
1892 2289 1.446016 GGACCCCCATGTTATAGCCT 58.554 55.000 0.00 0.00 0.00 4.58
1897 2294 1.702957 CATACGGGACCCCCATGTTAT 59.297 52.381 4.46 0.00 45.83 1.89
1936 2334 2.427506 CTGGAGCTGTAGGTTTTCCAC 58.572 52.381 0.00 0.00 43.73 4.02
1967 2365 2.547211 GCAATCACGGAGAGATGAATGG 59.453 50.000 0.00 0.00 38.00 3.16
1970 2368 2.028203 TGTGCAATCACGGAGAGATGAA 60.028 45.455 0.00 0.00 46.01 2.57
1995 2393 2.350522 GGTAGCTTGCCATATGGATCG 58.649 52.381 26.47 12.44 37.39 3.69
1996 2394 2.028112 TCGGTAGCTTGCCATATGGATC 60.028 50.000 26.47 9.18 37.39 3.36
2015 2415 7.064609 TCTGGACTTTTACTAAATCAATGCTCG 59.935 37.037 0.00 0.00 0.00 5.03
2042 2442 1.135888 GTCCGTGGTTTCCAAATACGC 60.136 52.381 0.00 0.00 34.18 4.42
2061 2461 2.592993 CCACCCATCACCCAGACGT 61.593 63.158 0.00 0.00 0.00 4.34
2080 2480 4.728534 CCAATATGTACCAACAACAACCG 58.271 43.478 0.00 0.00 39.58 4.44
2180 2580 5.525378 CGTCCCTTCTCCAGAATAAATGAAG 59.475 44.000 0.00 0.00 33.01 3.02
2301 2703 6.312426 AGCAACAAACATTTGATTTCGACAAA 59.688 30.769 11.24 2.59 40.55 2.83
2345 2747 0.451783 CAGCCATTTCCAGTAACGGC 59.548 55.000 0.00 0.00 36.52 5.68
2370 2772 3.253432 GCAGGTATATAAGCCAAGTTGCC 59.747 47.826 0.00 0.00 0.00 4.52
2419 2821 5.049818 CAGCTTCTTCTTGGTAAACAGTCAG 60.050 44.000 0.00 0.00 0.00 3.51
2428 2830 0.036388 CCGGCAGCTTCTTCTTGGTA 60.036 55.000 0.00 0.00 0.00 3.25
2451 2853 0.555769 AACCAAAACCTCCCTGCTGA 59.444 50.000 0.00 0.00 0.00 4.26
2457 2859 2.698274 ACACAATCAACCAAAACCTCCC 59.302 45.455 0.00 0.00 0.00 4.30
2491 2893 2.288948 TGACCAGTGGCATTGAAAATGC 60.289 45.455 9.78 15.02 43.85 3.56
2532 2934 4.036734 CCAAATGGCGTGCTAATTCAGTAT 59.963 41.667 0.00 0.00 0.00 2.12
2573 2980 0.947960 TTGCCAGCGATTCGAAAACA 59.052 45.000 10.88 0.00 0.00 2.83
2585 2992 4.367450 TGTAGAAATGTTTGTTTGCCAGC 58.633 39.130 0.00 0.00 0.00 4.85
2821 3234 2.025510 AGAGCTTTATTGCTTCCTGCCT 60.026 45.455 0.00 0.00 44.17 4.75
2822 3235 2.373224 AGAGCTTTATTGCTTCCTGCC 58.627 47.619 0.00 0.00 44.17 4.85
2870 3284 7.490079 CCGCAGTTACATATAGAAACAACACTA 59.510 37.037 0.00 0.00 0.00 2.74
2873 3287 6.167685 ACCGCAGTTACATATAGAAACAACA 58.832 36.000 0.00 0.00 0.00 3.33
2881 3295 4.749598 TGCAATGACCGCAGTTACATATAG 59.250 41.667 0.00 0.00 33.55 1.31
2954 3370 9.927668 ATTATGTTGGTTTCCAAATCTTTAGTG 57.072 29.630 2.65 0.00 45.73 2.74
2981 3397 0.859232 CACCTCCGTGAACAAGAACG 59.141 55.000 0.00 0.00 43.14 3.95
3164 3580 4.640771 AACCTTTTCAGCATCACCTAGA 57.359 40.909 0.00 0.00 0.00 2.43
3355 3771 6.389830 TTTCTTTCACATACATGTTGCTGT 57.610 33.333 2.30 2.99 39.39 4.40
3445 3862 0.468226 TGACGCCCAGACTTCAAACT 59.532 50.000 0.00 0.00 0.00 2.66
3474 3891 9.683069 AACATTCATTGTGTAAGATTCTTGTTC 57.317 29.630 9.22 1.07 38.99 3.18
3480 3897 8.044060 TGGAGAACATTCATTGTGTAAGATTC 57.956 34.615 0.00 0.00 38.99 2.52
3522 3939 2.257371 CACGACACGGACACGGAT 59.743 61.111 0.00 0.00 46.48 4.18
3602 4019 9.303537 CCTAGCTACTCAAAACTATTCAAGTAC 57.696 37.037 0.00 0.00 37.50 2.73
3630 4049 5.595257 TGCACATACATTAATGGCATGTT 57.405 34.783 24.35 13.70 36.23 2.71
3717 6538 4.151512 CGCCACAAAAATTCCAACAATACC 59.848 41.667 0.00 0.00 0.00 2.73
3807 6628 5.865552 GTGCACAGCAAGAAATATCACAAAT 59.134 36.000 13.17 0.00 41.47 2.32
3831 6652 3.076621 TGCTTAGGTGAACAAGATGCTG 58.923 45.455 0.00 0.00 0.00 4.41
4146 6967 1.404391 CATCTGAAGCAATGGGAGCAC 59.596 52.381 0.00 0.00 0.00 4.40
4311 7132 5.635278 TCAGTGATATGGTTGGACATGAT 57.365 39.130 0.00 0.00 32.39 2.45
4316 7137 5.041191 AGGATTCAGTGATATGGTTGGAC 57.959 43.478 0.00 0.00 0.00 4.02
4322 7143 6.749139 TCGAAACTAGGATTCAGTGATATGG 58.251 40.000 10.13 0.00 0.00 2.74
4367 7188 6.611236 TGATACATCCTACAGAGACAAATGGA 59.389 38.462 0.00 0.00 0.00 3.41
4378 7199 5.614308 TGAAGCCAATGATACATCCTACAG 58.386 41.667 0.00 0.00 0.00 2.74
4392 7213 2.306805 TCTCATGGACACTGAAGCCAAT 59.693 45.455 0.00 0.00 34.95 3.16
4416 7237 2.218115 TTACCGGGGCAAAGGGGATG 62.218 60.000 6.32 0.00 0.00 3.51
4472 7293 2.253414 GACAAAGAATCGCCGCACCC 62.253 60.000 0.00 0.00 0.00 4.61
4473 7294 1.134694 GACAAAGAATCGCCGCACC 59.865 57.895 0.00 0.00 0.00 5.01
4779 7613 6.852345 CGTTTTGTACAACGCCTATTTTTACT 59.148 34.615 8.07 0.00 42.81 2.24
4780 7614 7.014347 CGTTTTGTACAACGCCTATTTTTAC 57.986 36.000 8.07 0.00 42.81 2.01
4792 7626 3.548668 GGCTTCCAAACGTTTTGTACAAC 59.451 43.478 11.66 0.00 0.00 3.32
4793 7627 3.731264 CGGCTTCCAAACGTTTTGTACAA 60.731 43.478 11.66 3.59 0.00 2.41
4794 7628 2.223294 CGGCTTCCAAACGTTTTGTACA 60.223 45.455 11.66 0.00 0.00 2.90
4795 7629 2.223317 ACGGCTTCCAAACGTTTTGTAC 60.223 45.455 11.66 2.44 37.61 2.90
4796 7630 2.015587 ACGGCTTCCAAACGTTTTGTA 58.984 42.857 11.66 0.70 37.61 2.41
4797 7631 0.812549 ACGGCTTCCAAACGTTTTGT 59.187 45.000 11.66 0.00 37.61 2.83
4798 7632 3.633573 ACGGCTTCCAAACGTTTTG 57.366 47.368 11.66 8.43 37.61 2.44
4819 7653 1.483827 TCTGCTGCTTACATCCCTGAG 59.516 52.381 0.00 0.00 0.00 3.35
4820 7654 1.483827 CTCTGCTGCTTACATCCCTGA 59.516 52.381 0.00 0.00 0.00 3.86
4826 7660 0.907486 TCCTGCTCTGCTGCTTACAT 59.093 50.000 0.00 0.00 0.00 2.29
4841 7675 1.407989 GGGTGAAATCCAGAGCTCCTG 60.408 57.143 10.93 8.10 42.55 3.86
4856 7690 3.322541 TGTAATCGTTGAGACAAGGGTGA 59.677 43.478 0.00 0.00 0.00 4.02
4857 7691 3.432252 GTGTAATCGTTGAGACAAGGGTG 59.568 47.826 0.00 0.00 0.00 4.61
4858 7692 3.556423 GGTGTAATCGTTGAGACAAGGGT 60.556 47.826 0.00 0.00 0.00 4.34
4859 7693 3.000727 GGTGTAATCGTTGAGACAAGGG 58.999 50.000 0.00 0.00 0.00 3.95
4860 7694 3.926616 AGGTGTAATCGTTGAGACAAGG 58.073 45.455 0.00 0.00 0.00 3.61
4861 7695 5.107065 GGAAAGGTGTAATCGTTGAGACAAG 60.107 44.000 0.00 0.00 0.00 3.16
4862 7696 4.753107 GGAAAGGTGTAATCGTTGAGACAA 59.247 41.667 0.00 0.00 0.00 3.18
4863 7697 4.039973 AGGAAAGGTGTAATCGTTGAGACA 59.960 41.667 0.00 0.00 0.00 3.41
4864 7698 4.389077 CAGGAAAGGTGTAATCGTTGAGAC 59.611 45.833 0.00 0.00 0.00 3.36
4865 7699 4.039973 ACAGGAAAGGTGTAATCGTTGAGA 59.960 41.667 0.00 0.00 0.00 3.27
4866 7700 4.315803 ACAGGAAAGGTGTAATCGTTGAG 58.684 43.478 0.00 0.00 0.00 3.02
4867 7701 4.039973 AGACAGGAAAGGTGTAATCGTTGA 59.960 41.667 0.00 0.00 0.00 3.18
4868 7702 4.152402 CAGACAGGAAAGGTGTAATCGTTG 59.848 45.833 0.00 0.00 0.00 4.10
4869 7703 4.315803 CAGACAGGAAAGGTGTAATCGTT 58.684 43.478 0.00 0.00 0.00 3.85
4870 7704 3.864921 GCAGACAGGAAAGGTGTAATCGT 60.865 47.826 0.00 0.00 0.00 3.73
4871 7705 2.673368 GCAGACAGGAAAGGTGTAATCG 59.327 50.000 0.00 0.00 0.00 3.34
4872 7706 3.674997 TGCAGACAGGAAAGGTGTAATC 58.325 45.455 0.00 0.00 0.00 1.75
4873 7707 3.788227 TGCAGACAGGAAAGGTGTAAT 57.212 42.857 0.00 0.00 0.00 1.89
4874 7708 3.569194 TTGCAGACAGGAAAGGTGTAA 57.431 42.857 0.00 0.00 0.00 2.41
4875 7709 3.072330 TCATTGCAGACAGGAAAGGTGTA 59.928 43.478 0.00 0.00 0.00 2.90
4876 7710 2.158623 TCATTGCAGACAGGAAAGGTGT 60.159 45.455 0.00 0.00 0.00 4.16
4877 7711 2.227388 GTCATTGCAGACAGGAAAGGTG 59.773 50.000 1.41 0.00 38.40 4.00
4878 7712 2.158623 TGTCATTGCAGACAGGAAAGGT 60.159 45.455 4.76 0.00 43.18 3.50
4879 7713 2.507484 TGTCATTGCAGACAGGAAAGG 58.493 47.619 4.76 0.00 43.18 3.11
4899 7733 8.469200 CATTAAGTTAACCACCATGATGAACAT 58.531 33.333 0.88 0.00 40.17 2.71
4900 7734 7.576666 GCATTAAGTTAACCACCATGATGAACA 60.577 37.037 0.88 0.00 0.00 3.18
4901 7735 6.751888 GCATTAAGTTAACCACCATGATGAAC 59.248 38.462 0.88 0.00 0.00 3.18
4910 7744 3.251487 ACACGTGCATTAAGTTAACCACC 59.749 43.478 17.22 5.72 0.00 4.61
4935 7824 1.466167 GGCTGCAGTACAATCACACAG 59.534 52.381 16.64 0.00 0.00 3.66
4939 7828 3.242413 CGTATTGGCTGCAGTACAATCAC 60.242 47.826 29.41 24.01 36.36 3.06
4940 7829 2.935849 CGTATTGGCTGCAGTACAATCA 59.064 45.455 29.41 18.56 36.36 2.57
4943 7832 2.616960 CTCGTATTGGCTGCAGTACAA 58.383 47.619 22.24 22.24 0.00 2.41
4993 7882 5.991568 TCGCATCGACAGACAAAATAAAAA 58.008 33.333 0.00 0.00 0.00 1.94
5094 8000 3.445008 AGAAGGTGATGCTCCAAGAGTA 58.555 45.455 0.00 0.00 31.39 2.59
5095 8001 2.264455 AGAAGGTGATGCTCCAAGAGT 58.736 47.619 0.00 0.00 31.39 3.24
5096 8002 3.269178 GAAGAAGGTGATGCTCCAAGAG 58.731 50.000 0.00 0.00 0.00 2.85
5108 8014 2.656947 TCAAACCAGGGAAGAAGGTG 57.343 50.000 0.00 0.00 35.42 4.00
5124 8030 6.350361 CCATTTGAGTATGAGCACCAATTCAA 60.350 38.462 0.00 0.00 0.00 2.69
5133 8039 6.433716 TGAAAATCACCATTTGAGTATGAGCA 59.566 34.615 0.00 0.00 37.77 4.26
5154 8060 5.382616 CATGAAGATGGAGGATGGATGAAA 58.617 41.667 0.00 0.00 0.00 2.69
5167 8073 1.489649 ACTCCTGGAGCATGAAGATGG 59.510 52.381 23.43 0.00 32.04 3.51
5226 8132 0.771127 AGCCCTAGTTTGCAACCTGA 59.229 50.000 6.78 0.00 0.00 3.86
5279 8185 2.822561 TGAACAGAGAAGTGATCGAGCT 59.177 45.455 0.90 0.00 0.00 4.09
5297 8203 0.694771 AGCTCCAAGCACAGGATGAA 59.305 50.000 1.29 0.00 45.56 2.57
5318 8224 1.678627 AGTTAGCGATGTCGAGCAGAT 59.321 47.619 6.60 0.00 43.02 2.90
5320 8226 2.757686 TAGTTAGCGATGTCGAGCAG 57.242 50.000 6.60 0.00 43.02 4.24
5414 8349 2.094957 CGGTGCGTTGGACCATATTTTT 60.095 45.455 8.24 0.00 32.45 1.94
5415 8350 1.470890 CGGTGCGTTGGACCATATTTT 59.529 47.619 8.24 0.00 32.45 1.82
5416 8351 1.091537 CGGTGCGTTGGACCATATTT 58.908 50.000 8.24 0.00 32.45 1.40
5417 8352 0.250793 TCGGTGCGTTGGACCATATT 59.749 50.000 8.24 0.00 32.45 1.28
5418 8353 0.461339 GTCGGTGCGTTGGACCATAT 60.461 55.000 8.24 0.00 32.45 1.78
5419 8354 1.079681 GTCGGTGCGTTGGACCATA 60.080 57.895 8.24 0.00 32.45 2.74
5420 8355 2.358247 GTCGGTGCGTTGGACCAT 60.358 61.111 8.24 0.00 32.45 3.55
5421 8356 4.953868 CGTCGGTGCGTTGGACCA 62.954 66.667 8.24 0.00 32.45 4.02
5432 8367 2.740826 CCATCCGTTTGCGTCGGT 60.741 61.111 12.34 0.45 46.86 4.69
5435 8370 3.131478 CCCCCATCCGTTTGCGTC 61.131 66.667 0.00 0.00 36.15 5.19
5451 8386 0.516001 GGGCGAGAAGAAAACGAACC 59.484 55.000 0.00 0.00 0.00 3.62
5463 8398 2.676632 TAAATGCGTTAAGGGCGAGA 57.323 45.000 0.00 0.00 0.00 4.04
5464 8399 2.032030 CCATAAATGCGTTAAGGGCGAG 60.032 50.000 0.00 0.00 28.53 5.03
5471 8406 4.744795 ATTTGGGCCATAAATGCGTTAA 57.255 36.364 7.26 0.00 0.00 2.01
5472 8407 4.744795 AATTTGGGCCATAAATGCGTTA 57.255 36.364 7.26 0.00 0.00 3.18
5473 8408 3.625649 AATTTGGGCCATAAATGCGTT 57.374 38.095 7.26 1.52 0.00 4.84
5509 8444 2.030363 CCCACATGTTAGCGCTTTTTGA 60.030 45.455 18.68 0.00 0.00 2.69
5581 8516 0.704076 TGGGTGAGAAGGGGAAATGG 59.296 55.000 0.00 0.00 0.00 3.16
5652 8587 4.838152 CCGGGATGGCGGTGACAG 62.838 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.