Multiple sequence alignment - TraesCS2A01G175600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G175600 chr2A 100.000 5114 0 0 1 5114 133988139 133983026 0.000000e+00 9444.0
1 TraesCS2A01G175600 chr2A 86.938 712 72 4 4416 5114 584584400 584585103 0.000000e+00 780.0
2 TraesCS2A01G175600 chr2A 77.881 538 87 16 4584 5114 49711113 49710601 6.430000e-79 305.0
3 TraesCS2A01G175600 chr2A 88.889 72 7 1 4515 4586 49711675 49711605 2.540000e-13 87.9
4 TraesCS2A01G175600 chr2D 96.213 1294 35 5 3123 4416 127115049 127113770 0.000000e+00 2106.0
5 TraesCS2A01G175600 chr2D 95.447 1142 29 6 1922 3043 127116184 127115046 0.000000e+00 1799.0
6 TraesCS2A01G175600 chr2D 93.328 1169 62 7 758 1919 127117433 127116274 0.000000e+00 1712.0
7 TraesCS2A01G175600 chr2D 82.852 589 81 14 29 605 6300904 6300324 1.270000e-140 510.0
8 TraesCS2A01G175600 chr2D 87.900 438 48 5 34 468 606123348 606123783 1.270000e-140 510.0
9 TraesCS2A01G175600 chr2D 89.744 78 7 1 621 698 127227739 127227663 1.170000e-16 99.0
10 TraesCS2A01G175600 chr2B 96.980 927 22 3 3490 4416 180886705 180885785 0.000000e+00 1552.0
11 TraesCS2A01G175600 chr5D 87.219 712 71 8 4415 5114 135714517 135713814 0.000000e+00 793.0
12 TraesCS2A01G175600 chr5D 95.098 102 4 1 3025 3126 547542625 547542525 5.300000e-35 159.0
13 TraesCS2A01G175600 chr7D 87.055 703 68 13 4425 5114 432950699 432950007 0.000000e+00 773.0
14 TraesCS2A01G175600 chr7D 96.907 97 2 1 3030 3126 343751918 343752013 1.470000e-35 161.0
15 TraesCS2A01G175600 chr3D 85.190 709 82 12 4416 5111 177486180 177486878 0.000000e+00 706.0
16 TraesCS2A01G175600 chr3D 91.071 112 8 2 3020 3129 253386306 253386195 3.190000e-32 150.0
17 TraesCS2A01G175600 chr3D 91.071 112 6 4 3030 3139 482205982 482205873 1.150000e-31 148.0
18 TraesCS2A01G175600 chr3B 85.092 597 80 7 4479 5068 256361296 256361890 7.330000e-168 601.0
19 TraesCS2A01G175600 chr7B 84.245 603 75 16 29 624 113145012 113145601 2.070000e-158 569.0
20 TraesCS2A01G175600 chr7B 94.898 98 5 0 3038 3135 138653874 138653777 2.470000e-33 154.0
21 TraesCS2A01G175600 chr5B 88.864 440 47 2 29 467 606586363 606586801 1.620000e-149 540.0
22 TraesCS2A01G175600 chr5B 88.435 441 48 3 29 467 628674419 628674858 3.510000e-146 529.0
23 TraesCS2A01G175600 chr5B 88.209 441 49 3 29 467 625094870 625095309 1.630000e-144 523.0
24 TraesCS2A01G175600 chr5B 87.075 441 54 3 29 467 623162520 623162959 3.560000e-136 496.0
25 TraesCS2A01G175600 chr5B 86.771 446 55 4 24 467 626833491 626833934 1.280000e-135 494.0
26 TraesCS2A01G175600 chr5A 86.292 445 57 3 26 467 666865227 666865670 9.960000e-132 481.0
27 TraesCS2A01G175600 chr1B 85.083 362 35 7 4770 5114 512698306 512697947 8.150000e-93 351.0
28 TraesCS2A01G175600 chr1B 78.652 356 50 19 4475 4827 667715048 667715380 4.010000e-51 213.0
29 TraesCS2A01G175600 chr1B 80.342 234 36 5 4881 5107 638793224 638792994 8.810000e-38 169.0
30 TraesCS2A01G175600 chr6B 84.751 341 39 6 4787 5114 644810890 644811230 3.820000e-86 329.0
31 TraesCS2A01G175600 chr4A 100.000 90 0 0 3037 3126 544888198 544888287 3.170000e-37 167.0
32 TraesCS2A01G175600 chr1A 96.970 99 1 2 3026 3123 511009313 511009216 1.140000e-36 165.0
33 TraesCS2A01G175600 chr4B 96.000 100 3 1 3028 3126 11712876 11712975 1.470000e-35 161.0
34 TraesCS2A01G175600 chr4B 93.333 105 7 0 3033 3137 29271930 29271826 6.860000e-34 156.0
35 TraesCS2A01G175600 chr1D 86.076 79 11 0 5036 5114 347394214 347394292 9.120000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G175600 chr2A 133983026 133988139 5113 True 9444.000000 9444 100.000 1 5114 1 chr2A.!!$R1 5113
1 TraesCS2A01G175600 chr2A 584584400 584585103 703 False 780.000000 780 86.938 4416 5114 1 chr2A.!!$F1 698
2 TraesCS2A01G175600 chr2D 127113770 127117433 3663 True 1872.333333 2106 94.996 758 4416 3 chr2D.!!$R3 3658
3 TraesCS2A01G175600 chr2D 6300324 6300904 580 True 510.000000 510 82.852 29 605 1 chr2D.!!$R1 576
4 TraesCS2A01G175600 chr2B 180885785 180886705 920 True 1552.000000 1552 96.980 3490 4416 1 chr2B.!!$R1 926
5 TraesCS2A01G175600 chr5D 135713814 135714517 703 True 793.000000 793 87.219 4415 5114 1 chr5D.!!$R1 699
6 TraesCS2A01G175600 chr7D 432950007 432950699 692 True 773.000000 773 87.055 4425 5114 1 chr7D.!!$R1 689
7 TraesCS2A01G175600 chr3D 177486180 177486878 698 False 706.000000 706 85.190 4416 5111 1 chr3D.!!$F1 695
8 TraesCS2A01G175600 chr3B 256361296 256361890 594 False 601.000000 601 85.092 4479 5068 1 chr3B.!!$F1 589
9 TraesCS2A01G175600 chr7B 113145012 113145601 589 False 569.000000 569 84.245 29 624 1 chr7B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 326 0.035725 TCTGACGAGGCGGACTAAGA 60.036 55.000 0.00 0.00 0.00 2.10 F
677 693 0.037605 ACAACCGATCCTTGGTCGTC 60.038 55.000 0.00 0.00 39.29 4.20 F
752 768 0.106149 CCGCCATAGTTACCAGGGTC 59.894 60.000 0.00 0.00 0.00 4.46 F
1856 1878 0.251698 TGGCATCCAAGGCATGTTCA 60.252 50.000 0.00 0.00 39.34 3.18 F
1857 1879 1.117150 GGCATCCAAGGCATGTTCAT 58.883 50.000 0.00 0.00 0.00 2.57 F
3324 3454 1.064389 AGGTTCTTGGATAAGGCAGCC 60.064 52.381 1.84 1.84 34.59 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1226 1.095228 ATACAATGTTCCCCAGCGCG 61.095 55.000 0.0 0.0 0.00 6.86 R
2379 2491 0.538584 TTGATGACGAGCATGAGCCT 59.461 50.000 0.0 0.0 43.56 4.58 R
2427 2539 4.576463 CCAACAGCAGATAGATACAAACCC 59.424 45.833 0.0 0.0 0.00 4.11 R
2823 2935 2.484889 GGTCCTCTCTTGTGTGTGTTC 58.515 52.381 0.0 0.0 0.00 3.18 R
3457 3587 2.885894 TGTGCATTTGTGAGATTGCAGA 59.114 40.909 0.0 0.0 44.99 4.26 R
4717 4848 0.247460 CAGGCCGATGACAAGTGAGA 59.753 55.000 0.0 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.735132 CGCGACGCTTTCTCCCCA 62.735 66.667 19.02 0.00 0.00 4.96
22 23 2.125106 GCGACGCTTTCTCCCCAT 60.125 61.111 13.73 0.00 0.00 4.00
23 24 2.464459 GCGACGCTTTCTCCCCATG 61.464 63.158 13.73 0.00 0.00 3.66
24 25 1.218047 CGACGCTTTCTCCCCATGA 59.782 57.895 0.00 0.00 0.00 3.07
25 26 0.391130 CGACGCTTTCTCCCCATGAA 60.391 55.000 0.00 0.00 0.00 2.57
26 27 1.373570 GACGCTTTCTCCCCATGAAG 58.626 55.000 0.00 0.00 0.00 3.02
27 28 0.984230 ACGCTTTCTCCCCATGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
37 38 1.000731 CCCCATGAAGAGAGATCGAGC 59.999 57.143 0.00 0.00 0.00 5.03
52 53 3.612371 GAGCTCGTCGCCGTCAAGT 62.612 63.158 0.00 0.00 40.39 3.16
61 62 2.707849 GCCGTCAAGTAGGAGCCGA 61.708 63.158 0.00 0.00 0.00 5.54
77 78 2.808315 GAAGGAGATCGAGCGCCA 59.192 61.111 25.33 0.00 0.00 5.69
81 82 2.964389 GAGATCGAGCGCCAAGGC 60.964 66.667 2.29 0.00 37.85 4.35
112 113 1.202177 CCGAAGATTTTGTGGCCGATG 60.202 52.381 0.00 0.00 0.00 3.84
124 125 4.470170 CCGATGTCGACGCGGTCA 62.470 66.667 30.23 7.47 43.02 4.02
144 145 2.417257 GGCTGCCATTGCCGAATGA 61.417 57.895 15.17 0.00 41.49 2.57
151 152 1.203052 CCATTGCCGAATGAAGCTTGT 59.797 47.619 2.10 0.00 41.49 3.16
154 155 1.512734 GCCGAATGAAGCTTGTGCG 60.513 57.895 2.10 2.35 45.42 5.34
161 162 1.004440 GAAGCTTGTGCGAGGAGGT 60.004 57.895 2.10 0.00 45.42 3.85
163 164 1.758440 AAGCTTGTGCGAGGAGGTGA 61.758 55.000 0.00 0.00 45.42 4.02
208 211 2.757868 CTCGAAGACCTCATCCTCAAGT 59.242 50.000 0.00 0.00 0.00 3.16
220 223 3.047718 CTCAAGTAGGCGGTCGCGA 62.048 63.158 3.71 3.71 43.06 5.87
231 234 2.665185 GTCGCGACCAACCTTGCT 60.665 61.111 28.61 0.00 0.00 3.91
243 246 0.465460 ACCTTGCTGCGAAGGACAAA 60.465 50.000 26.61 2.11 44.87 2.83
297 300 3.450457 AGAGGCAGAAGTTCATCGATCTT 59.550 43.478 5.50 0.00 0.00 2.40
306 309 3.446873 AGTTCATCGATCTTGTCAGCTCT 59.553 43.478 0.00 0.00 0.00 4.09
320 323 2.113433 GCTCTGACGAGGCGGACTA 61.113 63.158 0.00 0.00 37.75 2.59
323 326 0.035725 TCTGACGAGGCGGACTAAGA 60.036 55.000 0.00 0.00 0.00 2.10
324 327 0.809385 CTGACGAGGCGGACTAAGAA 59.191 55.000 0.00 0.00 0.00 2.52
335 338 0.606604 GACTAAGAACCTCCACCGCA 59.393 55.000 0.00 0.00 0.00 5.69
366 369 0.165944 CCGCGAGCTCGTTCATTTTT 59.834 50.000 34.46 0.00 42.22 1.94
370 373 3.153735 GCGAGCTCGTTCATTTTTGTAC 58.846 45.455 34.46 11.51 42.22 2.90
379 382 5.467399 TCGTTCATTTTTGTACATCGACCTT 59.533 36.000 0.00 0.00 0.00 3.50
411 415 3.043199 GAGATCCCCCACCCCCTA 58.957 66.667 0.00 0.00 0.00 3.53
412 416 1.320512 GAGATCCCCCACCCCCTAA 59.679 63.158 0.00 0.00 0.00 2.69
415 427 1.132168 AGATCCCCCACCCCCTAATAC 60.132 57.143 0.00 0.00 0.00 1.89
420 432 2.335933 CCCCACCCCCTAATACTAGTG 58.664 57.143 5.39 0.00 0.00 2.74
424 436 3.899980 CCACCCCCTAATACTAGTGGTAC 59.100 52.174 5.39 0.00 39.91 3.34
472 484 7.168219 AGTATGTGATGAATTAGTGTGGTTGT 58.832 34.615 0.00 0.00 0.00 3.32
478 490 9.691362 GTGATGAATTAGTGTGGTTGTAATTTT 57.309 29.630 0.00 0.00 0.00 1.82
534 550 2.107705 CGGATCTACTCTGCCGTGT 58.892 57.895 0.00 0.00 38.99 4.49
541 557 4.569761 TCTACTCTGCCGTGTATGATTC 57.430 45.455 0.00 0.00 0.00 2.52
548 564 0.462375 CCGTGTATGATTCCGACCCA 59.538 55.000 0.00 0.00 0.00 4.51
549 565 1.070134 CCGTGTATGATTCCGACCCAT 59.930 52.381 0.00 0.00 0.00 4.00
556 572 6.094325 GTGTATGATTCCGACCCATAAAACAA 59.906 38.462 0.00 0.00 0.00 2.83
560 576 5.126384 TGATTCCGACCCATAAAACAATTCC 59.874 40.000 0.00 0.00 0.00 3.01
561 577 4.035612 TCCGACCCATAAAACAATTCCA 57.964 40.909 0.00 0.00 0.00 3.53
565 581 4.320641 CGACCCATAAAACAATTCCACGTT 60.321 41.667 0.00 0.00 0.00 3.99
584 600 5.678910 CGTTAAACTGTAAACGCCGTATA 57.321 39.130 13.16 0.00 41.55 1.47
601 617 4.175516 CGTATACGGGTCAGCTTTTTACA 58.824 43.478 17.61 0.00 35.37 2.41
607 623 2.160205 GGTCAGCTTTTTACAGGGTCC 58.840 52.381 0.00 0.00 0.00 4.46
611 627 0.521735 GCTTTTTACAGGGTCCGCTG 59.478 55.000 9.54 9.54 0.00 5.18
612 628 0.521735 CTTTTTACAGGGTCCGCTGC 59.478 55.000 10.88 0.00 0.00 5.25
615 631 1.476845 TTTACAGGGTCCGCTGCAGA 61.477 55.000 20.43 0.00 0.00 4.26
617 633 1.960040 TACAGGGTCCGCTGCAGATG 61.960 60.000 20.43 8.81 0.00 2.90
624 640 0.755079 TCCGCTGCAGATGCTCTAAT 59.245 50.000 20.43 0.00 42.66 1.73
625 641 1.146637 CCGCTGCAGATGCTCTAATC 58.853 55.000 20.43 0.00 42.66 1.75
626 642 1.539712 CCGCTGCAGATGCTCTAATCA 60.540 52.381 20.43 0.00 42.66 2.57
627 643 1.793532 CGCTGCAGATGCTCTAATCAG 59.206 52.381 20.43 0.00 42.66 2.90
628 644 2.545322 CGCTGCAGATGCTCTAATCAGA 60.545 50.000 20.43 0.00 42.66 3.27
643 659 8.839310 CTCTAATCAGAGGTTTCTCAAAAGAA 57.161 34.615 0.00 0.00 44.05 2.52
644 660 9.277783 CTCTAATCAGAGGTTTCTCAAAAGAAA 57.722 33.333 0.00 0.00 44.35 2.52
657 673 9.717942 TTTCTCAAAAGAAAAGAAAAATGGACA 57.282 25.926 0.00 0.00 46.09 4.02
658 674 9.717942 TTCTCAAAAGAAAAGAAAAATGGACAA 57.282 25.926 0.00 0.00 38.58 3.18
659 675 9.150348 TCTCAAAAGAAAAGAAAAATGGACAAC 57.850 29.630 0.00 0.00 0.00 3.32
660 676 8.839310 TCAAAAGAAAAGAAAAATGGACAACA 57.161 26.923 0.00 0.00 0.00 3.33
661 677 9.277783 TCAAAAGAAAAGAAAAATGGACAACAA 57.722 25.926 0.00 0.00 0.00 2.83
662 678 9.328721 CAAAAGAAAAGAAAAATGGACAACAAC 57.671 29.630 0.00 0.00 0.00 3.32
663 679 7.609760 AAGAAAAGAAAAATGGACAACAACC 57.390 32.000 0.00 0.00 0.00 3.77
664 680 5.810074 AGAAAAGAAAAATGGACAACAACCG 59.190 36.000 0.00 0.00 0.00 4.44
665 681 4.993029 AAGAAAAATGGACAACAACCGA 57.007 36.364 0.00 0.00 0.00 4.69
666 682 5.529581 AAGAAAAATGGACAACAACCGAT 57.470 34.783 0.00 0.00 0.00 4.18
667 683 5.121221 AGAAAAATGGACAACAACCGATC 57.879 39.130 0.00 0.00 0.00 3.69
668 684 3.934457 AAAATGGACAACAACCGATCC 57.066 42.857 0.00 0.00 0.00 3.36
669 685 2.879103 AATGGACAACAACCGATCCT 57.121 45.000 0.00 0.00 32.06 3.24
670 686 2.879103 ATGGACAACAACCGATCCTT 57.121 45.000 0.00 0.00 32.06 3.36
671 687 1.890876 TGGACAACAACCGATCCTTG 58.109 50.000 0.00 0.00 32.06 3.61
672 688 1.165270 GGACAACAACCGATCCTTGG 58.835 55.000 3.48 0.00 0.00 3.61
673 689 1.544759 GGACAACAACCGATCCTTGGT 60.545 52.381 3.48 0.00 42.98 3.67
674 690 1.804748 GACAACAACCGATCCTTGGTC 59.195 52.381 3.48 0.00 39.29 4.02
675 691 0.796312 CAACAACCGATCCTTGGTCG 59.204 55.000 3.48 0.00 39.29 4.79
676 692 0.395312 AACAACCGATCCTTGGTCGT 59.605 50.000 0.00 0.00 39.29 4.34
677 693 0.037605 ACAACCGATCCTTGGTCGTC 60.038 55.000 0.00 0.00 39.29 4.20
678 694 1.076533 CAACCGATCCTTGGTCGTCG 61.077 60.000 0.00 0.00 39.29 5.12
679 695 2.582498 CCGATCCTTGGTCGTCGC 60.582 66.667 0.00 0.00 37.39 5.19
680 696 2.180769 CGATCCTTGGTCGTCGCA 59.819 61.111 0.00 0.00 34.56 5.10
681 697 1.874019 CGATCCTTGGTCGTCGCAG 60.874 63.158 0.00 0.00 34.56 5.18
682 698 1.511305 GATCCTTGGTCGTCGCAGA 59.489 57.895 0.00 0.00 0.00 4.26
683 699 0.108804 GATCCTTGGTCGTCGCAGAA 60.109 55.000 0.00 0.00 39.69 3.02
684 700 0.320374 ATCCTTGGTCGTCGCAGAAA 59.680 50.000 0.00 0.00 39.69 2.52
685 701 0.319555 TCCTTGGTCGTCGCAGAAAG 60.320 55.000 0.00 0.00 39.69 2.62
686 702 0.319555 CCTTGGTCGTCGCAGAAAGA 60.320 55.000 0.00 0.00 39.69 2.52
687 703 1.497991 CTTGGTCGTCGCAGAAAGAA 58.502 50.000 0.00 0.00 39.69 2.52
688 704 1.864711 CTTGGTCGTCGCAGAAAGAAA 59.135 47.619 0.00 0.00 39.69 2.52
689 705 1.942677 TGGTCGTCGCAGAAAGAAAA 58.057 45.000 0.00 0.00 39.69 2.29
690 706 2.281517 TGGTCGTCGCAGAAAGAAAAA 58.718 42.857 0.00 0.00 39.69 1.94
691 707 2.875933 TGGTCGTCGCAGAAAGAAAAAT 59.124 40.909 0.00 0.00 39.69 1.82
692 708 4.059511 TGGTCGTCGCAGAAAGAAAAATA 58.940 39.130 0.00 0.00 39.69 1.40
693 709 4.512198 TGGTCGTCGCAGAAAGAAAAATAA 59.488 37.500 0.00 0.00 39.69 1.40
694 710 4.844522 GGTCGTCGCAGAAAGAAAAATAAC 59.155 41.667 0.00 0.00 39.69 1.89
695 711 5.437263 GTCGTCGCAGAAAGAAAAATAACA 58.563 37.500 0.00 0.00 39.69 2.41
696 712 5.905181 GTCGTCGCAGAAAGAAAAATAACAA 59.095 36.000 0.00 0.00 39.69 2.83
697 713 6.577427 GTCGTCGCAGAAAGAAAAATAACAAT 59.423 34.615 0.00 0.00 39.69 2.71
698 714 6.795114 TCGTCGCAGAAAGAAAAATAACAATC 59.205 34.615 0.00 0.00 39.69 2.67
699 715 6.236684 CGTCGCAGAAAGAAAAATAACAATCG 60.237 38.462 0.00 0.00 39.69 3.34
700 716 6.795114 GTCGCAGAAAGAAAAATAACAATCGA 59.205 34.615 0.00 0.00 39.69 3.59
701 717 7.322699 GTCGCAGAAAGAAAAATAACAATCGAA 59.677 33.333 0.00 0.00 39.69 3.71
702 718 8.020819 TCGCAGAAAGAAAAATAACAATCGAAT 58.979 29.630 0.00 0.00 0.00 3.34
703 719 9.272901 CGCAGAAAGAAAAATAACAATCGAATA 57.727 29.630 0.00 0.00 0.00 1.75
715 731 9.559732 AATAACAATCGAATATCCAATGACTGA 57.440 29.630 0.00 0.00 0.00 3.41
716 732 7.864108 AACAATCGAATATCCAATGACTGAA 57.136 32.000 0.00 0.00 0.00 3.02
717 733 7.251704 ACAATCGAATATCCAATGACTGAAC 57.748 36.000 0.00 0.00 0.00 3.18
718 734 6.260936 ACAATCGAATATCCAATGACTGAACC 59.739 38.462 0.00 0.00 0.00 3.62
719 735 5.614324 TCGAATATCCAATGACTGAACCT 57.386 39.130 0.00 0.00 0.00 3.50
720 736 5.989477 TCGAATATCCAATGACTGAACCTT 58.011 37.500 0.00 0.00 0.00 3.50
721 737 6.414732 TCGAATATCCAATGACTGAACCTTT 58.585 36.000 0.00 0.00 0.00 3.11
722 738 6.538742 TCGAATATCCAATGACTGAACCTTTC 59.461 38.462 0.00 0.00 0.00 2.62
723 739 6.510157 CGAATATCCAATGACTGAACCTTTCG 60.510 42.308 0.00 0.00 0.00 3.46
724 740 3.485463 TCCAATGACTGAACCTTTCGT 57.515 42.857 0.00 0.00 0.00 3.85
725 741 3.399330 TCCAATGACTGAACCTTTCGTC 58.601 45.455 0.00 0.00 35.38 4.20
726 742 3.071023 TCCAATGACTGAACCTTTCGTCT 59.929 43.478 10.22 0.00 35.63 4.18
727 743 4.282449 TCCAATGACTGAACCTTTCGTCTA 59.718 41.667 10.22 2.00 35.63 2.59
728 744 5.046591 TCCAATGACTGAACCTTTCGTCTAT 60.047 40.000 10.22 3.47 35.63 1.98
729 745 5.063944 CCAATGACTGAACCTTTCGTCTATG 59.936 44.000 10.22 9.03 35.63 2.23
730 746 4.866508 TGACTGAACCTTTCGTCTATGT 57.133 40.909 10.22 0.00 35.63 2.29
731 747 4.806330 TGACTGAACCTTTCGTCTATGTC 58.194 43.478 10.22 0.00 35.63 3.06
732 748 4.523173 TGACTGAACCTTTCGTCTATGTCT 59.477 41.667 10.22 0.00 35.63 3.41
733 749 5.061920 ACTGAACCTTTCGTCTATGTCTC 57.938 43.478 0.00 0.00 0.00 3.36
734 750 4.082136 ACTGAACCTTTCGTCTATGTCTCC 60.082 45.833 0.00 0.00 0.00 3.71
735 751 3.119602 TGAACCTTTCGTCTATGTCTCCG 60.120 47.826 0.00 0.00 0.00 4.63
736 752 1.134560 ACCTTTCGTCTATGTCTCCGC 59.865 52.381 0.00 0.00 0.00 5.54
737 753 1.536284 CCTTTCGTCTATGTCTCCGCC 60.536 57.143 0.00 0.00 0.00 6.13
738 754 1.134367 CTTTCGTCTATGTCTCCGCCA 59.866 52.381 0.00 0.00 0.00 5.69
739 755 1.399714 TTCGTCTATGTCTCCGCCAT 58.600 50.000 0.00 0.00 0.00 4.40
740 756 2.265589 TCGTCTATGTCTCCGCCATA 57.734 50.000 0.00 0.00 0.00 2.74
741 757 2.152016 TCGTCTATGTCTCCGCCATAG 58.848 52.381 0.00 0.00 41.97 2.23
742 758 1.880675 CGTCTATGTCTCCGCCATAGT 59.119 52.381 7.16 0.00 41.55 2.12
743 759 2.293677 CGTCTATGTCTCCGCCATAGTT 59.706 50.000 7.16 0.00 41.55 2.24
744 760 3.501062 CGTCTATGTCTCCGCCATAGTTA 59.499 47.826 7.16 0.00 41.55 2.24
745 761 4.613167 CGTCTATGTCTCCGCCATAGTTAC 60.613 50.000 7.16 0.32 41.55 2.50
746 762 3.825014 TCTATGTCTCCGCCATAGTTACC 59.175 47.826 7.16 0.00 41.55 2.85
747 763 1.855295 TGTCTCCGCCATAGTTACCA 58.145 50.000 0.00 0.00 0.00 3.25
748 764 1.754803 TGTCTCCGCCATAGTTACCAG 59.245 52.381 0.00 0.00 0.00 4.00
749 765 1.068741 GTCTCCGCCATAGTTACCAGG 59.931 57.143 0.00 0.00 0.00 4.45
750 766 0.393077 CTCCGCCATAGTTACCAGGG 59.607 60.000 0.00 0.00 0.00 4.45
751 767 0.325860 TCCGCCATAGTTACCAGGGT 60.326 55.000 0.00 0.00 0.00 4.34
752 768 0.106149 CCGCCATAGTTACCAGGGTC 59.894 60.000 0.00 0.00 0.00 4.46
753 769 0.828022 CGCCATAGTTACCAGGGTCA 59.172 55.000 0.00 0.00 0.00 4.02
754 770 1.208535 CGCCATAGTTACCAGGGTCAA 59.791 52.381 0.00 0.00 0.00 3.18
755 771 2.355310 CGCCATAGTTACCAGGGTCAAA 60.355 50.000 0.00 0.00 0.00 2.69
756 772 3.692690 GCCATAGTTACCAGGGTCAAAA 58.307 45.455 0.00 0.00 0.00 2.44
802 818 1.340399 ATGGATCAGAAGCCGGAGCA 61.340 55.000 5.05 0.00 43.56 4.26
808 824 2.048127 GAAGCCGGAGCACGTCTT 60.048 61.111 5.05 0.00 44.35 3.01
945 961 3.314307 AATAGAGACTCCCATCGGACA 57.686 47.619 0.00 0.00 33.32 4.02
966 982 3.388024 CAGGGAGAGGATATTTTCGGTGA 59.612 47.826 0.00 0.00 0.00 4.02
1051 1067 7.681304 GCATTCTCGTCAAGGTACATCTAACTA 60.681 40.741 0.00 0.00 0.00 2.24
1065 1081 1.614413 CTAACTAGCAGATCCGACCCC 59.386 57.143 0.00 0.00 0.00 4.95
1130 1151 1.304134 GTTCCCTGGGGCGAAATGT 60.304 57.895 14.00 0.00 34.68 2.71
1205 1226 3.338249 TCCTAAGACTGATTGCTGTTGC 58.662 45.455 0.00 0.00 40.20 4.17
1267 1288 0.601311 GGGAGTGCGCATATGGAGTC 60.601 60.000 15.91 0.60 0.00 3.36
1293 1314 2.165437 TCGGGATGCTATTTGTTTTGCC 59.835 45.455 0.00 0.00 0.00 4.52
1301 1322 3.498018 GCTATTTGTTTTGCCCAACTTGG 59.502 43.478 0.12 0.12 37.25 3.61
1337 1358 4.586001 GCACCCCTTGACATGAATATCATT 59.414 41.667 0.00 0.00 34.28 2.57
1351 1372 7.303182 TGAATATCATTGATAGACGAAGGGT 57.697 36.000 11.77 0.00 0.00 4.34
1388 1409 4.511527 TCAGAACCTGAGAAGATTGATGC 58.488 43.478 0.00 0.00 35.39 3.91
1408 1429 7.312154 TGATGCAATGTTAAGCGTTTATTTCT 58.688 30.769 0.00 0.00 0.00 2.52
1471 1492 7.179269 TGTTGGGCTTAGGAAAATTATGTACT 58.821 34.615 0.00 0.00 0.00 2.73
1473 1494 8.837389 GTTGGGCTTAGGAAAATTATGTACTAG 58.163 37.037 0.00 0.00 0.00 2.57
1521 1543 5.571784 ACAATGCTTATGTTGAGACATGG 57.428 39.130 0.00 0.00 45.80 3.66
1537 1559 2.374504 ACATGGCCTTCTATCAGGATGG 59.625 50.000 3.32 0.00 35.71 3.51
1553 1575 0.905809 ATGGTGCAACATGCCATGGT 60.906 50.000 18.48 0.00 44.23 3.55
1665 1687 6.055588 GGTGAGCCTTCTTGTATTAAGCATA 58.944 40.000 0.00 0.00 0.00 3.14
1698 1720 8.980481 TTCTTTAAAGTCACAATCTTCTTCCT 57.020 30.769 14.74 0.00 0.00 3.36
1711 1733 3.909995 TCTTCTTCCTTGAAGACCATGGA 59.090 43.478 21.47 0.00 46.54 3.41
1727 1749 3.636300 CCATGGAAGAACTGACAACCAAA 59.364 43.478 5.56 0.00 0.00 3.28
1730 1752 4.531854 TGGAAGAACTGACAACCAAATCA 58.468 39.130 0.00 0.00 0.00 2.57
1755 1777 9.237187 CATATAGTCGTATATATGGAGCATCCT 57.763 37.037 15.78 0.00 41.83 3.24
1782 1804 9.624697 TTTTTACATTCTTTAGCATGACATGAC 57.375 29.630 19.76 10.26 0.00 3.06
1783 1805 5.824904 ACATTCTTTAGCATGACATGACC 57.175 39.130 19.76 2.27 0.00 4.02
1790 1812 3.472283 AGCATGACATGACCTCAGATC 57.528 47.619 19.76 0.00 0.00 2.75
1791 1813 2.133553 GCATGACATGACCTCAGATCG 58.866 52.381 19.76 0.00 0.00 3.69
1792 1814 2.133553 CATGACATGACCTCAGATCGC 58.866 52.381 10.03 0.00 0.00 4.58
1812 1834 3.871006 CGCATGGTTAGTTGCTCTATTCA 59.129 43.478 0.00 0.00 36.71 2.57
1821 1843 7.351223 GTTAGTTGCTCTATTCATGATTCTGC 58.649 38.462 0.00 0.00 0.00 4.26
1856 1878 0.251698 TGGCATCCAAGGCATGTTCA 60.252 50.000 0.00 0.00 39.34 3.18
1857 1879 1.117150 GGCATCCAAGGCATGTTCAT 58.883 50.000 0.00 0.00 0.00 2.57
1858 1880 2.309613 GGCATCCAAGGCATGTTCATA 58.690 47.619 0.00 0.00 0.00 2.15
1859 1881 2.295349 GGCATCCAAGGCATGTTCATAG 59.705 50.000 0.00 0.00 0.00 2.23
1860 1882 2.954318 GCATCCAAGGCATGTTCATAGT 59.046 45.455 0.00 0.00 0.00 2.12
1861 1883 4.136796 GCATCCAAGGCATGTTCATAGTA 58.863 43.478 0.00 0.00 0.00 1.82
1867 1890 6.767902 TCCAAGGCATGTTCATAGTATTCTTC 59.232 38.462 0.00 0.00 0.00 2.87
1868 1891 6.769822 CCAAGGCATGTTCATAGTATTCTTCT 59.230 38.462 0.00 0.00 0.00 2.85
1897 1920 6.386927 TCACAGTTATCTTCCTGGGTGATATT 59.613 38.462 9.27 1.90 33.73 1.28
1903 1926 6.838401 ATCTTCCTGGGTGATATTCTCTTT 57.162 37.500 0.00 0.00 0.00 2.52
1904 1927 5.994250 TCTTCCTGGGTGATATTCTCTTTG 58.006 41.667 0.00 0.00 0.00 2.77
1908 1931 6.180472 TCCTGGGTGATATTCTCTTTGTTTC 58.820 40.000 0.00 0.00 0.00 2.78
1919 1942 4.130118 TCTCTTTGTTTCTGCTGGTTCTC 58.870 43.478 0.00 0.00 0.00 2.87
1920 1943 3.879295 CTCTTTGTTTCTGCTGGTTCTCA 59.121 43.478 0.00 0.00 0.00 3.27
1971 2081 2.641815 AGGACTTGAATGCTTGGAGAGT 59.358 45.455 0.00 0.00 0.00 3.24
2198 2310 2.435805 CAGTCTTCCTGCTAAGCCCATA 59.564 50.000 0.00 0.00 33.59 2.74
2202 2314 1.424638 TCCTGCTAAGCCCATAGACC 58.575 55.000 0.00 0.00 0.00 3.85
2212 2324 7.182749 TGCTAAGCCCATAGACCTTATTCATAT 59.817 37.037 0.00 0.00 0.00 1.78
2279 2391 9.817809 TCTAACCATTCTGTTGATGAATACTAC 57.182 33.333 0.00 0.00 33.38 2.73
2285 2397 6.471233 TCTGTTGATGAATACTACTGAGGG 57.529 41.667 0.00 0.00 0.00 4.30
2289 2401 7.331026 TGTTGATGAATACTACTGAGGGAAAG 58.669 38.462 0.00 0.00 0.00 2.62
2379 2491 2.026356 TGCTCCAGCCTTATGCAACTTA 60.026 45.455 0.00 0.00 44.83 2.24
2427 2539 8.599774 GGAACTGAGAATCTAATTTTCTTCTCG 58.400 37.037 14.02 12.01 44.15 4.04
2649 2761 6.326583 GGGCTATAGGATATGGTATTGCTACA 59.673 42.308 1.04 0.00 30.85 2.74
2652 2764 8.258007 GCTATAGGATATGGTATTGCTACAACA 58.742 37.037 1.04 0.00 0.00 3.33
2757 2869 7.004691 AGAGTATTTTCCAGGTTACTTTTGCT 58.995 34.615 0.00 0.00 0.00 3.91
2762 2874 3.295973 TCCAGGTTACTTTTGCTGCTTT 58.704 40.909 0.00 0.00 0.00 3.51
2823 2935 2.092753 TCTTTATGAGGCCAGGAGCAAG 60.093 50.000 5.01 0.00 46.50 4.01
2960 3090 3.407698 ACATTTTGTCATGTCCGTGCTA 58.592 40.909 0.00 0.00 31.26 3.49
3047 3177 7.872061 TGGATCAACATAATATGTACTCCCT 57.128 36.000 18.21 0.00 44.07 4.20
3048 3178 7.907389 TGGATCAACATAATATGTACTCCCTC 58.093 38.462 18.21 7.52 44.07 4.30
3049 3179 7.734865 TGGATCAACATAATATGTACTCCCTCT 59.265 37.037 18.21 0.00 44.07 3.69
3050 3180 8.037758 GGATCAACATAATATGTACTCCCTCTG 58.962 40.741 6.30 0.00 44.07 3.35
3051 3181 7.914427 TCAACATAATATGTACTCCCTCTGT 57.086 36.000 6.30 0.00 44.07 3.41
3052 3182 9.601810 ATCAACATAATATGTACTCCCTCTGTA 57.398 33.333 6.30 0.00 44.07 2.74
3053 3183 9.429109 TCAACATAATATGTACTCCCTCTGTAA 57.571 33.333 6.30 0.00 44.07 2.41
3056 3186 9.435570 ACATAATATGTACTCCCTCTGTAAACT 57.564 33.333 3.75 0.00 42.78 2.66
3067 3197 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3068 3198 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3069 3199 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3070 3200 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3071 3201 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3119 3249 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3120 3250 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
3121 3251 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
3122 3252 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3123 3253 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3124 3254 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3166 3296 4.322877 GGGAAGTTGGAGAGAAAGGTACTC 60.323 50.000 0.00 0.00 38.49 2.59
3168 3298 3.174779 AGTTGGAGAGAAAGGTACTCCC 58.825 50.000 0.00 0.00 46.57 4.30
3228 3358 5.283717 GCAACATACTTTTACTGTCATTGCG 59.716 40.000 0.00 0.00 0.00 4.85
3229 3359 6.370593 CAACATACTTTTACTGTCATTGCGT 58.629 36.000 0.00 0.00 0.00 5.24
3230 3360 6.554334 ACATACTTTTACTGTCATTGCGTT 57.446 33.333 0.00 0.00 0.00 4.84
3231 3361 7.661127 ACATACTTTTACTGTCATTGCGTTA 57.339 32.000 0.00 0.00 0.00 3.18
3232 3362 7.515643 ACATACTTTTACTGTCATTGCGTTAC 58.484 34.615 0.00 0.00 0.00 2.50
3258 3388 5.424757 TCCTATGGTTTTGTATGAAGTCGG 58.575 41.667 0.00 0.00 0.00 4.79
3262 3392 3.003897 TGGTTTTGTATGAAGTCGGCAAC 59.996 43.478 0.00 0.00 0.00 4.17
3283 3413 6.292114 GCAACGAATGTTCACGTATCATATCA 60.292 38.462 0.00 0.00 41.87 2.15
3324 3454 1.064389 AGGTTCTTGGATAAGGCAGCC 60.064 52.381 1.84 1.84 34.59 4.85
3345 3475 4.640647 GCCGTTATTTCTGATCTTCCCTTT 59.359 41.667 0.00 0.00 0.00 3.11
3457 3587 3.003480 GCGACTGGAGTATTCTTTGCTT 58.997 45.455 0.00 0.00 0.00 3.91
3804 3934 3.664025 CTTCGTCATCGCTGGGGCA 62.664 63.158 0.00 0.00 38.60 5.36
3946 4076 3.324846 AGCTATCATCACCCTTATTGCGA 59.675 43.478 0.00 0.00 0.00 5.10
4134 4264 4.864704 AAATCCATTGTAACCACACCAC 57.135 40.909 0.00 0.00 33.30 4.16
4135 4265 3.517296 ATCCATTGTAACCACACCACA 57.483 42.857 0.00 0.00 33.30 4.17
4136 4266 2.577700 TCCATTGTAACCACACCACAC 58.422 47.619 0.00 0.00 33.30 3.82
4137 4267 1.611491 CCATTGTAACCACACCACACC 59.389 52.381 0.00 0.00 33.30 4.16
4138 4268 2.302260 CATTGTAACCACACCACACCA 58.698 47.619 0.00 0.00 33.30 4.17
4139 4269 2.509166 TTGTAACCACACCACACCAA 57.491 45.000 0.00 0.00 33.30 3.67
4140 4270 2.738587 TGTAACCACACCACACCAAT 57.261 45.000 0.00 0.00 0.00 3.16
4141 4271 3.019799 TGTAACCACACCACACCAATT 57.980 42.857 0.00 0.00 0.00 2.32
4142 4272 2.690497 TGTAACCACACCACACCAATTG 59.310 45.455 0.00 0.00 0.00 2.32
4143 4273 2.151502 AACCACACCACACCAATTGA 57.848 45.000 7.12 0.00 0.00 2.57
4163 4293 9.283768 CAATTGAAAGTGTATATATAGGCCACA 57.716 33.333 5.01 0.00 0.00 4.17
4227 4357 5.295292 GGGTATCTGAGAATGATGTGTTGTG 59.705 44.000 0.00 0.00 0.00 3.33
4269 4399 5.632347 GCACCTTCAGAAAGATGATTTTGTG 59.368 40.000 0.00 0.00 34.14 3.33
4283 4413 6.395426 TGATTTTGTGAAGTTCTGAATGCT 57.605 33.333 4.17 0.00 0.00 3.79
4286 4416 1.532437 TGTGAAGTTCTGAATGCTGCG 59.468 47.619 4.17 0.00 0.00 5.18
4289 4419 3.076621 TGAAGTTCTGAATGCTGCGAAT 58.923 40.909 4.17 0.00 0.00 3.34
4305 4435 4.348656 TGCGAATAGTGTCGATCTTACAC 58.651 43.478 16.39 16.39 46.09 2.90
4331 4461 5.116084 TCCTAGCATTTCTAATGGCTGTT 57.884 39.130 0.00 0.00 37.17 3.16
4336 4466 3.950395 GCATTTCTAATGGCTGTTCTCCT 59.050 43.478 1.99 0.00 0.00 3.69
4394 4524 6.898451 CAAATGTTTGTATGCAACATTTGC 57.102 33.333 27.85 3.88 44.51 3.68
4430 4560 8.751302 ATTCATATTTTGGGAAACGTTTGTAC 57.249 30.769 20.10 8.65 0.00 2.90
4434 4564 5.838531 TTTTGGGAAACGTTTGTACTCAT 57.161 34.783 20.10 0.00 0.00 2.90
4455 4585 1.741770 GGCTGATCTTTCGGTGCGT 60.742 57.895 0.00 0.00 0.00 5.24
4464 4594 3.719883 TTCGGTGCGTGTCAACCGT 62.720 57.895 12.99 0.00 45.06 4.83
4466 4596 2.279918 GGTGCGTGTCAACCGTCT 60.280 61.111 0.00 0.00 0.00 4.18
4467 4597 2.308039 GGTGCGTGTCAACCGTCTC 61.308 63.158 0.00 0.00 0.00 3.36
4468 4598 2.028484 TGCGTGTCAACCGTCTCC 59.972 61.111 0.00 0.00 0.00 3.71
4469 4599 3.103911 GCGTGTCAACCGTCTCCG 61.104 66.667 0.00 0.00 0.00 4.63
4470 4600 2.333938 CGTGTCAACCGTCTCCGT 59.666 61.111 0.00 0.00 0.00 4.69
4471 4601 2.014554 CGTGTCAACCGTCTCCGTG 61.015 63.158 0.00 0.00 0.00 4.94
4472 4602 1.663702 GTGTCAACCGTCTCCGTGG 60.664 63.158 0.00 0.00 0.00 4.94
4473 4603 2.048503 GTCAACCGTCTCCGTGGG 60.049 66.667 0.00 0.00 0.00 4.61
4491 4621 3.375239 TCCGTGGGCGTTCGATCA 61.375 61.111 0.00 0.00 36.15 2.92
4556 4687 1.270550 CTTGCAACTCCACCCATGTTC 59.729 52.381 0.00 0.00 0.00 3.18
4692 4823 0.958876 GACCTTCGCCGTCCCAATTT 60.959 55.000 0.00 0.00 0.00 1.82
4717 4848 9.650714 TTCATCCCTCATATTTTCTTTCATCAT 57.349 29.630 0.00 0.00 0.00 2.45
4735 4866 1.134580 CATCTCACTTGTCATCGGCCT 60.135 52.381 0.00 0.00 0.00 5.19
4774 4905 2.441348 TCGCATCTCCGTGCCCTA 60.441 61.111 0.00 0.00 42.06 3.53
4808 4939 4.740822 GCCAAGCCACCACCCGAT 62.741 66.667 0.00 0.00 0.00 4.18
4845 4976 3.315142 GATCCGTGCAGCCCAGTCA 62.315 63.158 0.00 0.00 0.00 3.41
4896 5039 0.834261 TGATGTCGGTGTCAGGGGAA 60.834 55.000 0.00 0.00 0.00 3.97
4912 5055 0.985490 GGAACCCTCCCTGCTGATCT 60.985 60.000 0.00 0.00 35.42 2.75
4971 5115 7.835822 AGCCATTGTTGCAATAGTTGTTTATA 58.164 30.769 0.59 0.00 0.00 0.98
5070 5214 7.880195 ACAAAGCTCTTGTTACAATAGTCATCT 59.120 33.333 11.22 0.00 0.00 2.90
5096 5240 4.686091 GTGTTTCTGAAATAAAGCCCTTGC 59.314 41.667 6.06 0.00 37.95 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.735132 TGGGGAGAAAGCGTCGCG 62.735 66.667 12.30 0.00 0.00 5.87
5 6 2.125106 ATGGGGAGAAAGCGTCGC 60.125 61.111 9.80 9.80 0.00 5.19
6 7 0.391130 TTCATGGGGAGAAAGCGTCG 60.391 55.000 0.00 0.00 0.00 5.12
7 8 1.066143 TCTTCATGGGGAGAAAGCGTC 60.066 52.381 0.00 0.00 0.00 5.19
8 9 0.984230 TCTTCATGGGGAGAAAGCGT 59.016 50.000 0.00 0.00 0.00 5.07
9 10 1.208052 TCTCTTCATGGGGAGAAAGCG 59.792 52.381 13.45 0.00 35.91 4.68
10 11 2.503356 TCTCTCTTCATGGGGAGAAAGC 59.497 50.000 15.58 0.00 38.01 3.51
11 12 4.501229 CGATCTCTCTTCATGGGGAGAAAG 60.501 50.000 15.58 8.43 38.01 2.62
12 13 3.386078 CGATCTCTCTTCATGGGGAGAAA 59.614 47.826 15.58 7.02 38.01 2.52
13 14 2.961741 CGATCTCTCTTCATGGGGAGAA 59.038 50.000 15.58 9.69 38.01 2.87
14 15 2.175715 TCGATCTCTCTTCATGGGGAGA 59.824 50.000 14.53 14.53 38.85 3.71
15 16 2.557924 CTCGATCTCTCTTCATGGGGAG 59.442 54.545 8.79 8.79 0.00 4.30
16 17 2.591923 CTCGATCTCTCTTCATGGGGA 58.408 52.381 0.00 0.00 0.00 4.81
17 18 1.000731 GCTCGATCTCTCTTCATGGGG 59.999 57.143 0.00 0.00 0.00 4.96
18 19 1.962807 AGCTCGATCTCTCTTCATGGG 59.037 52.381 0.00 0.00 0.00 4.00
19 20 2.350676 CGAGCTCGATCTCTCTTCATGG 60.351 54.545 32.06 0.00 43.02 3.66
20 21 2.290367 ACGAGCTCGATCTCTCTTCATG 59.710 50.000 40.58 8.52 43.02 3.07
21 22 2.548057 GACGAGCTCGATCTCTCTTCAT 59.452 50.000 40.58 15.16 43.02 2.57
22 23 1.937223 GACGAGCTCGATCTCTCTTCA 59.063 52.381 40.58 0.00 43.02 3.02
23 24 1.070843 CGACGAGCTCGATCTCTCTTC 60.071 57.143 40.58 23.39 46.14 2.87
24 25 0.934496 CGACGAGCTCGATCTCTCTT 59.066 55.000 40.58 17.32 46.14 2.85
25 26 1.495584 GCGACGAGCTCGATCTCTCT 61.496 60.000 40.58 18.13 46.14 3.10
26 27 1.083015 GCGACGAGCTCGATCTCTC 60.083 63.158 40.58 25.50 46.14 3.20
27 28 2.539338 GGCGACGAGCTCGATCTCT 61.539 63.158 40.58 19.74 46.14 3.10
52 53 0.472898 TCGATCTCCTTCGGCTCCTA 59.527 55.000 0.00 0.00 39.56 2.94
61 62 1.142748 CTTGGCGCTCGATCTCCTT 59.857 57.895 7.64 0.00 0.00 3.36
129 130 0.966875 AGCTTCATTCGGCAATGGCA 60.967 50.000 7.75 0.00 43.71 4.92
142 143 1.004560 CCTCCTCGCACAAGCTTCA 60.005 57.895 0.00 0.00 39.10 3.02
144 145 1.302033 CACCTCCTCGCACAAGCTT 60.302 57.895 0.00 0.00 39.10 3.74
151 152 4.742201 GCGCTTCACCTCCTCGCA 62.742 66.667 0.00 0.00 44.50 5.10
154 155 4.821589 CCGGCGCTTCACCTCCTC 62.822 72.222 7.64 0.00 0.00 3.71
172 173 2.179517 GAGCTCCTCGTCGTGGTG 59.820 66.667 12.76 11.46 0.00 4.17
220 223 1.898574 CCTTCGCAGCAAGGTTGGT 60.899 57.895 12.94 0.00 38.58 3.67
231 234 0.937699 CGTCGTCTTTGTCCTTCGCA 60.938 55.000 0.00 0.00 0.00 5.10
271 274 2.709213 GATGAACTTCTGCCTCTGCTT 58.291 47.619 0.00 0.00 38.71 3.91
280 283 4.032672 GCTGACAAGATCGATGAACTTCTG 59.967 45.833 0.54 0.00 0.00 3.02
306 309 0.524862 GTTCTTAGTCCGCCTCGTCA 59.475 55.000 0.00 0.00 0.00 4.35
312 315 0.108281 GTGGAGGTTCTTAGTCCGCC 60.108 60.000 10.41 10.41 42.62 6.13
313 316 0.108281 GGTGGAGGTTCTTAGTCCGC 60.108 60.000 0.00 0.00 39.71 5.54
314 317 0.172803 CGGTGGAGGTTCTTAGTCCG 59.827 60.000 0.00 0.00 32.51 4.79
320 323 1.079127 CGATGCGGTGGAGGTTCTT 60.079 57.895 0.00 0.00 0.00 2.52
323 326 2.264794 GACGATGCGGTGGAGGTT 59.735 61.111 0.00 0.00 0.00 3.50
324 327 3.771160 GGACGATGCGGTGGAGGT 61.771 66.667 0.00 0.00 0.00 3.85
347 350 0.165944 AAAAATGAACGAGCTCGCGG 59.834 50.000 34.83 10.93 44.43 6.46
350 353 4.383774 TGTACAAAAATGAACGAGCTCG 57.616 40.909 33.45 33.45 46.33 5.03
359 362 4.083003 GCCAAGGTCGATGTACAAAAATGA 60.083 41.667 0.00 0.00 0.00 2.57
366 369 0.535335 GAGGCCAAGGTCGATGTACA 59.465 55.000 5.01 0.00 0.00 2.90
370 373 2.892425 GCGAGGCCAAGGTCGATG 60.892 66.667 15.64 0.00 38.50 3.84
442 454 8.768019 CCACACTAATTCATCACATACTACATG 58.232 37.037 0.00 0.00 0.00 3.21
460 472 5.507650 GCGGGAAAAATTACAACCACACTAA 60.508 40.000 0.00 0.00 0.00 2.24
519 534 4.021894 GGAATCATACACGGCAGAGTAGAT 60.022 45.833 0.55 1.81 0.00 1.98
532 548 5.746284 TGTTTTATGGGTCGGAATCATACA 58.254 37.500 2.32 0.00 0.00 2.29
534 550 7.013846 GGAATTGTTTTATGGGTCGGAATCATA 59.986 37.037 0.00 0.00 0.00 2.15
541 557 3.426963 CGTGGAATTGTTTTATGGGTCGG 60.427 47.826 0.00 0.00 0.00 4.79
556 572 4.319694 GGCGTTTACAGTTTAACGTGGAAT 60.320 41.667 17.08 0.00 46.40 3.01
560 576 2.033832 ACGGCGTTTACAGTTTAACGTG 60.034 45.455 6.77 13.58 46.40 4.49
561 577 2.200899 ACGGCGTTTACAGTTTAACGT 58.799 42.857 6.77 0.00 46.40 3.99
580 596 4.569564 CCTGTAAAAAGCTGACCCGTATAC 59.430 45.833 0.00 0.00 0.00 1.47
584 600 1.544759 CCCTGTAAAAAGCTGACCCGT 60.545 52.381 0.00 0.00 0.00 5.28
591 607 0.400594 AGCGGACCCTGTAAAAAGCT 59.599 50.000 0.00 0.00 0.00 3.74
592 608 0.521735 CAGCGGACCCTGTAAAAAGC 59.478 55.000 2.66 0.00 0.00 3.51
593 609 0.521735 GCAGCGGACCCTGTAAAAAG 59.478 55.000 10.54 0.00 35.28 2.27
594 610 0.179015 TGCAGCGGACCCTGTAAAAA 60.179 50.000 10.54 0.00 35.28 1.94
601 617 4.479993 GCATCTGCAGCGGACCCT 62.480 66.667 9.47 0.00 41.59 4.34
624 640 7.938140 TTCTTTTCTTTTGAGAAACCTCTGA 57.062 32.000 1.35 0.00 37.50 3.27
625 641 8.986477 TTTTCTTTTCTTTTGAGAAACCTCTG 57.014 30.769 1.35 0.00 38.66 3.35
628 644 9.166173 CCATTTTTCTTTTCTTTTGAGAAACCT 57.834 29.630 1.35 0.00 38.66 3.50
629 645 9.161629 TCCATTTTTCTTTTCTTTTGAGAAACC 57.838 29.630 1.35 0.00 38.66 3.27
630 646 9.973246 GTCCATTTTTCTTTTCTTTTGAGAAAC 57.027 29.630 1.35 0.00 38.66 2.78
631 647 9.717942 TGTCCATTTTTCTTTTCTTTTGAGAAA 57.282 25.926 0.00 0.00 37.56 2.52
632 648 9.717942 TTGTCCATTTTTCTTTTCTTTTGAGAA 57.282 25.926 0.00 0.00 0.00 2.87
633 649 9.150348 GTTGTCCATTTTTCTTTTCTTTTGAGA 57.850 29.630 0.00 0.00 0.00 3.27
634 650 8.934825 TGTTGTCCATTTTTCTTTTCTTTTGAG 58.065 29.630 0.00 0.00 0.00 3.02
635 651 8.839310 TGTTGTCCATTTTTCTTTTCTTTTGA 57.161 26.923 0.00 0.00 0.00 2.69
636 652 9.328721 GTTGTTGTCCATTTTTCTTTTCTTTTG 57.671 29.630 0.00 0.00 0.00 2.44
637 653 8.511321 GGTTGTTGTCCATTTTTCTTTTCTTTT 58.489 29.630 0.00 0.00 0.00 2.27
638 654 7.148490 CGGTTGTTGTCCATTTTTCTTTTCTTT 60.148 33.333 0.00 0.00 0.00 2.52
639 655 6.312672 CGGTTGTTGTCCATTTTTCTTTTCTT 59.687 34.615 0.00 0.00 0.00 2.52
640 656 5.810074 CGGTTGTTGTCCATTTTTCTTTTCT 59.190 36.000 0.00 0.00 0.00 2.52
641 657 5.808030 TCGGTTGTTGTCCATTTTTCTTTTC 59.192 36.000 0.00 0.00 0.00 2.29
642 658 5.725362 TCGGTTGTTGTCCATTTTTCTTTT 58.275 33.333 0.00 0.00 0.00 2.27
643 659 5.331876 TCGGTTGTTGTCCATTTTTCTTT 57.668 34.783 0.00 0.00 0.00 2.52
644 660 4.993029 TCGGTTGTTGTCCATTTTTCTT 57.007 36.364 0.00 0.00 0.00 2.52
645 661 4.022329 GGATCGGTTGTTGTCCATTTTTCT 60.022 41.667 0.00 0.00 0.00 2.52
646 662 4.022329 AGGATCGGTTGTTGTCCATTTTTC 60.022 41.667 0.00 0.00 33.12 2.29
647 663 3.895041 AGGATCGGTTGTTGTCCATTTTT 59.105 39.130 0.00 0.00 33.12 1.94
648 664 3.496331 AGGATCGGTTGTTGTCCATTTT 58.504 40.909 0.00 0.00 33.12 1.82
649 665 3.154827 AGGATCGGTTGTTGTCCATTT 57.845 42.857 0.00 0.00 33.12 2.32
650 666 2.819608 CAAGGATCGGTTGTTGTCCATT 59.180 45.455 0.00 0.00 33.12 3.16
651 667 2.436417 CAAGGATCGGTTGTTGTCCAT 58.564 47.619 0.00 0.00 33.12 3.41
652 668 1.544537 CCAAGGATCGGTTGTTGTCCA 60.545 52.381 5.88 0.00 33.12 4.02
653 669 1.165270 CCAAGGATCGGTTGTTGTCC 58.835 55.000 5.88 0.00 0.00 4.02
654 670 1.804748 GACCAAGGATCGGTTGTTGTC 59.195 52.381 0.00 3.94 36.69 3.18
655 671 1.876416 CGACCAAGGATCGGTTGTTGT 60.876 52.381 0.00 0.00 36.69 3.32
656 672 0.796312 CGACCAAGGATCGGTTGTTG 59.204 55.000 0.00 0.00 36.69 3.33
657 673 3.226884 CGACCAAGGATCGGTTGTT 57.773 52.632 0.00 0.00 36.69 2.83
658 674 2.055299 ACGACCAAGGATCGGTTGT 58.945 52.632 5.55 5.55 44.82 3.32
659 675 1.076533 CGACGACCAAGGATCGGTTG 61.077 60.000 13.03 4.43 43.95 3.77
660 676 1.214589 CGACGACCAAGGATCGGTT 59.785 57.895 13.03 0.00 43.95 4.44
661 677 2.882876 CGACGACCAAGGATCGGT 59.117 61.111 13.03 0.00 43.95 4.69
662 678 2.582498 GCGACGACCAAGGATCGG 60.582 66.667 0.00 0.00 43.95 4.18
663 679 1.874019 CTGCGACGACCAAGGATCG 60.874 63.158 0.00 8.75 45.17 3.69
664 680 0.108804 TTCTGCGACGACCAAGGATC 60.109 55.000 0.00 0.00 0.00 3.36
665 681 0.320374 TTTCTGCGACGACCAAGGAT 59.680 50.000 0.00 0.00 0.00 3.24
666 682 0.319555 CTTTCTGCGACGACCAAGGA 60.320 55.000 0.00 0.00 0.00 3.36
667 683 0.319555 TCTTTCTGCGACGACCAAGG 60.320 55.000 0.00 0.00 0.00 3.61
668 684 1.497991 TTCTTTCTGCGACGACCAAG 58.502 50.000 0.00 0.00 0.00 3.61
669 685 1.942677 TTTCTTTCTGCGACGACCAA 58.057 45.000 0.00 0.00 0.00 3.67
670 686 1.942677 TTTTCTTTCTGCGACGACCA 58.057 45.000 0.00 0.00 0.00 4.02
671 687 3.537793 ATTTTTCTTTCTGCGACGACC 57.462 42.857 0.00 0.00 0.00 4.79
672 688 5.437263 TGTTATTTTTCTTTCTGCGACGAC 58.563 37.500 0.00 0.00 0.00 4.34
673 689 5.660629 TGTTATTTTTCTTTCTGCGACGA 57.339 34.783 0.00 0.00 0.00 4.20
674 690 6.236684 CGATTGTTATTTTTCTTTCTGCGACG 60.237 38.462 0.00 0.00 0.00 5.12
675 691 6.795114 TCGATTGTTATTTTTCTTTCTGCGAC 59.205 34.615 0.00 0.00 0.00 5.19
676 692 6.893759 TCGATTGTTATTTTTCTTTCTGCGA 58.106 32.000 0.00 0.00 0.00 5.10
677 693 7.547285 TTCGATTGTTATTTTTCTTTCTGCG 57.453 32.000 0.00 0.00 0.00 5.18
689 705 9.559732 TCAGTCATTGGATATTCGATTGTTATT 57.440 29.630 0.00 0.00 0.00 1.40
690 706 9.559732 TTCAGTCATTGGATATTCGATTGTTAT 57.440 29.630 0.00 0.00 0.00 1.89
691 707 8.826710 GTTCAGTCATTGGATATTCGATTGTTA 58.173 33.333 0.00 0.00 0.00 2.41
692 708 7.201732 GGTTCAGTCATTGGATATTCGATTGTT 60.202 37.037 0.00 0.00 0.00 2.83
693 709 6.260936 GGTTCAGTCATTGGATATTCGATTGT 59.739 38.462 0.00 0.00 0.00 2.71
694 710 6.484643 AGGTTCAGTCATTGGATATTCGATTG 59.515 38.462 0.00 0.00 0.00 2.67
695 711 6.595682 AGGTTCAGTCATTGGATATTCGATT 58.404 36.000 0.00 0.00 0.00 3.34
696 712 6.179906 AGGTTCAGTCATTGGATATTCGAT 57.820 37.500 0.00 0.00 0.00 3.59
697 713 5.614324 AGGTTCAGTCATTGGATATTCGA 57.386 39.130 0.00 0.00 0.00 3.71
698 714 6.510157 CGAAAGGTTCAGTCATTGGATATTCG 60.510 42.308 0.00 0.00 0.00 3.34
699 715 6.316390 ACGAAAGGTTCAGTCATTGGATATTC 59.684 38.462 0.00 0.00 0.00 1.75
700 716 6.180472 ACGAAAGGTTCAGTCATTGGATATT 58.820 36.000 0.00 0.00 0.00 1.28
701 717 5.745227 ACGAAAGGTTCAGTCATTGGATAT 58.255 37.500 0.00 0.00 0.00 1.63
702 718 5.046591 AGACGAAAGGTTCAGTCATTGGATA 60.047 40.000 12.23 0.00 36.42 2.59
703 719 4.003648 GACGAAAGGTTCAGTCATTGGAT 58.996 43.478 0.00 0.00 35.12 3.41
704 720 3.071023 AGACGAAAGGTTCAGTCATTGGA 59.929 43.478 12.23 0.00 36.42 3.53
705 721 3.403038 AGACGAAAGGTTCAGTCATTGG 58.597 45.455 12.23 0.00 36.42 3.16
706 722 5.639506 ACATAGACGAAAGGTTCAGTCATTG 59.360 40.000 12.23 11.07 36.42 2.82
707 723 5.794894 ACATAGACGAAAGGTTCAGTCATT 58.205 37.500 12.23 1.75 36.42 2.57
708 724 5.186021 AGACATAGACGAAAGGTTCAGTCAT 59.814 40.000 12.23 5.05 36.42 3.06
709 725 4.523173 AGACATAGACGAAAGGTTCAGTCA 59.477 41.667 12.23 3.64 36.42 3.41
710 726 5.061920 AGACATAGACGAAAGGTTCAGTC 57.938 43.478 0.00 0.00 35.18 3.51
711 727 4.082136 GGAGACATAGACGAAAGGTTCAGT 60.082 45.833 0.00 0.00 0.00 3.41
712 728 4.425520 GGAGACATAGACGAAAGGTTCAG 58.574 47.826 0.00 0.00 0.00 3.02
713 729 3.119602 CGGAGACATAGACGAAAGGTTCA 60.120 47.826 0.00 0.00 0.00 3.18
714 730 3.436496 CGGAGACATAGACGAAAGGTTC 58.564 50.000 0.00 0.00 0.00 3.62
715 731 2.416972 GCGGAGACATAGACGAAAGGTT 60.417 50.000 0.00 0.00 0.00 3.50
716 732 1.134560 GCGGAGACATAGACGAAAGGT 59.865 52.381 0.00 0.00 0.00 3.50
717 733 1.536284 GGCGGAGACATAGACGAAAGG 60.536 57.143 0.00 0.00 31.66 3.11
718 734 1.841450 GGCGGAGACATAGACGAAAG 58.159 55.000 0.00 0.00 31.66 2.62
729 745 1.068741 CCTGGTAACTATGGCGGAGAC 59.931 57.143 0.00 0.00 37.61 3.36
730 746 1.410004 CCTGGTAACTATGGCGGAGA 58.590 55.000 0.00 0.00 37.61 3.71
731 747 0.393077 CCCTGGTAACTATGGCGGAG 59.607 60.000 0.00 0.00 37.61 4.63
732 748 0.325860 ACCCTGGTAACTATGGCGGA 60.326 55.000 0.00 0.00 37.61 5.54
733 749 0.106149 GACCCTGGTAACTATGGCGG 59.894 60.000 0.00 0.00 37.61 6.13
734 750 0.828022 TGACCCTGGTAACTATGGCG 59.172 55.000 0.00 0.00 37.61 5.69
735 751 3.359695 TTTGACCCTGGTAACTATGGC 57.640 47.619 0.00 0.00 37.61 4.40
736 752 4.014406 GGTTTTGACCCTGGTAACTATGG 58.986 47.826 0.00 0.00 37.61 2.74
737 753 4.658063 TGGTTTTGACCCTGGTAACTATG 58.342 43.478 0.00 0.00 37.61 2.23
738 754 4.809691 GCTGGTTTTGACCCTGGTAACTAT 60.810 45.833 0.00 0.00 37.61 2.12
739 755 3.497227 GCTGGTTTTGACCCTGGTAACTA 60.497 47.826 0.00 0.00 37.61 2.24
740 756 2.751816 GCTGGTTTTGACCCTGGTAACT 60.752 50.000 0.00 0.00 37.61 2.24
741 757 1.611977 GCTGGTTTTGACCCTGGTAAC 59.388 52.381 0.00 0.00 0.00 2.50
742 758 1.479757 GGCTGGTTTTGACCCTGGTAA 60.480 52.381 0.00 0.00 0.00 2.85
743 759 0.111639 GGCTGGTTTTGACCCTGGTA 59.888 55.000 0.00 0.00 0.00 3.25
744 760 1.152546 GGCTGGTTTTGACCCTGGT 60.153 57.895 0.00 0.00 0.00 4.00
745 761 2.268076 CGGCTGGTTTTGACCCTGG 61.268 63.158 0.00 0.00 0.00 4.45
746 762 2.919494 GCGGCTGGTTTTGACCCTG 61.919 63.158 0.00 0.00 0.00 4.45
747 763 2.597510 GCGGCTGGTTTTGACCCT 60.598 61.111 0.00 0.00 0.00 4.34
748 764 3.680786 GGCGGCTGGTTTTGACCC 61.681 66.667 0.00 0.00 0.00 4.46
749 765 2.022240 TTTGGCGGCTGGTTTTGACC 62.022 55.000 11.43 0.00 0.00 4.02
750 766 0.033366 ATTTGGCGGCTGGTTTTGAC 59.967 50.000 11.43 0.00 0.00 3.18
751 767 0.316841 GATTTGGCGGCTGGTTTTGA 59.683 50.000 11.43 0.00 0.00 2.69
752 768 0.033228 TGATTTGGCGGCTGGTTTTG 59.967 50.000 11.43 0.00 0.00 2.44
753 769 0.975887 ATGATTTGGCGGCTGGTTTT 59.024 45.000 11.43 0.00 0.00 2.43
754 770 0.247185 CATGATTTGGCGGCTGGTTT 59.753 50.000 11.43 0.00 0.00 3.27
755 771 1.606885 CCATGATTTGGCGGCTGGTT 61.607 55.000 11.43 0.00 39.09 3.67
756 772 2.053865 CCATGATTTGGCGGCTGGT 61.054 57.895 11.43 0.00 39.09 4.00
778 794 1.303309 CGGCTTCTGATCCATTCCAC 58.697 55.000 0.00 0.00 0.00 4.02
780 796 0.469917 TCCGGCTTCTGATCCATTCC 59.530 55.000 0.00 0.00 0.00 3.01
808 824 2.049802 GGAGAAACCACGCGACGA 60.050 61.111 15.93 0.00 38.79 4.20
928 944 0.396417 CCTGTCCGATGGGAGTCTCT 60.396 60.000 0.00 0.00 44.97 3.10
929 945 1.395826 CCCTGTCCGATGGGAGTCTC 61.396 65.000 0.00 0.00 44.97 3.36
930 946 1.381872 CCCTGTCCGATGGGAGTCT 60.382 63.158 0.00 0.00 44.97 3.24
931 947 1.381327 TCCCTGTCCGATGGGAGTC 60.381 63.158 0.00 0.00 46.69 3.36
945 961 3.643792 CTCACCGAAAATATCCTCTCCCT 59.356 47.826 0.00 0.00 0.00 4.20
966 982 1.492993 GGGTCTGCTTTGGTCCCTCT 61.493 60.000 0.00 0.00 35.63 3.69
1026 1042 6.565234 AGTTAGATGTACCTTGACGAGAATG 58.435 40.000 0.00 0.00 0.00 2.67
1034 1050 6.265649 GGATCTGCTAGTTAGATGTACCTTGA 59.734 42.308 13.99 0.00 35.14 3.02
1051 1067 2.835431 CTCGGGGTCGGATCTGCT 60.835 66.667 0.00 0.00 36.95 4.24
1094 1114 0.681175 ACCCCAGCAAGCAAATTCAC 59.319 50.000 0.00 0.00 0.00 3.18
1097 1117 0.686789 GGAACCCCAGCAAGCAAATT 59.313 50.000 0.00 0.00 0.00 1.82
1130 1151 1.962807 CCACCAACAATTTCTGCTCCA 59.037 47.619 0.00 0.00 0.00 3.86
1205 1226 1.095228 ATACAATGTTCCCCAGCGCG 61.095 55.000 0.00 0.00 0.00 6.86
1267 1288 6.198966 GCAAAACAAATAGCATCCCGAAATAG 59.801 38.462 0.00 0.00 0.00 1.73
1293 1314 3.254903 GCAACTAACCTAACCCAAGTTGG 59.745 47.826 15.52 15.52 44.50 3.77
1301 1322 1.353358 AGGGGTGCAACTAACCTAACC 59.647 52.381 0.00 0.00 37.85 2.85
1302 1323 2.817844 CAAGGGGTGCAACTAACCTAAC 59.182 50.000 0.00 0.00 35.12 2.34
1306 1327 1.244816 GTCAAGGGGTGCAACTAACC 58.755 55.000 0.00 0.00 36.74 2.85
1311 1332 1.327303 TTCATGTCAAGGGGTGCAAC 58.673 50.000 0.00 0.00 0.00 4.17
1337 1358 6.124340 TGTATCAACTACCCTTCGTCTATCA 58.876 40.000 0.00 0.00 0.00 2.15
1351 1372 9.219603 CTCAGGTTCTGAAATTTGTATCAACTA 57.780 33.333 0.00 0.00 40.18 2.24
1388 1409 6.616947 TGGGAGAAATAAACGCTTAACATTG 58.383 36.000 0.00 0.00 0.00 2.82
1408 1429 4.726317 TCCTTGATGAATCCATTACTGGGA 59.274 41.667 0.00 0.00 43.34 4.37
1471 1492 5.483937 TGAGGAGTAAATCAAAGACAGCCTA 59.516 40.000 0.00 0.00 0.00 3.93
1473 1494 4.393371 GTGAGGAGTAAATCAAAGACAGCC 59.607 45.833 0.00 0.00 0.00 4.85
1521 1543 1.141657 TGCACCATCCTGATAGAAGGC 59.858 52.381 0.00 0.00 37.24 4.35
1589 1611 3.828875 CCTCTAGGTTTAAGCTCTGGG 57.171 52.381 0.00 0.00 0.00 4.45
1665 1687 9.822185 AGATTGTGACTTTAAAGAAGCAAAAAT 57.178 25.926 21.92 16.13 0.00 1.82
1674 1696 8.840321 CAAGGAAGAAGATTGTGACTTTAAAGA 58.160 33.333 21.92 0.00 0.00 2.52
1698 1720 4.141505 TGTCAGTTCTTCCATGGTCTTCAA 60.142 41.667 12.58 0.00 0.00 2.69
1711 1733 9.167311 GACTATATGATTTGGTTGTCAGTTCTT 57.833 33.333 0.00 0.00 0.00 2.52
1713 1735 7.277981 ACGACTATATGATTTGGTTGTCAGTTC 59.722 37.037 0.00 0.00 0.00 3.01
1730 1752 9.815306 AAGGATGCTCCATATATACGACTATAT 57.185 33.333 0.00 0.00 39.61 0.86
1772 1794 2.133553 GCGATCTGAGGTCATGTCATG 58.866 52.381 6.47 6.47 0.00 3.07
1776 1798 1.202615 CCATGCGATCTGAGGTCATGT 60.203 52.381 0.00 0.00 34.36 3.21
1778 1800 1.126488 ACCATGCGATCTGAGGTCAT 58.874 50.000 0.00 0.00 0.00 3.06
1780 1802 2.101582 ACTAACCATGCGATCTGAGGTC 59.898 50.000 0.00 0.00 0.00 3.85
1781 1803 2.111384 ACTAACCATGCGATCTGAGGT 58.889 47.619 0.00 0.00 0.00 3.85
1782 1804 2.868583 CAACTAACCATGCGATCTGAGG 59.131 50.000 0.00 0.00 0.00 3.86
1783 1805 2.286294 GCAACTAACCATGCGATCTGAG 59.714 50.000 0.00 0.00 32.17 3.35
1790 1812 3.871006 TGAATAGAGCAACTAACCATGCG 59.129 43.478 0.00 0.00 46.98 4.73
1791 1813 5.528690 TCATGAATAGAGCAACTAACCATGC 59.471 40.000 18.76 0.00 40.50 4.06
1792 1814 7.741027 ATCATGAATAGAGCAACTAACCATG 57.259 36.000 0.00 18.16 41.16 3.66
1821 1843 5.188555 TGGATGCCAAGAATAGCTATCCTAG 59.811 44.000 6.72 0.00 37.47 3.02
1843 1865 6.769822 AGAAGAATACTATGAACATGCCTTGG 59.230 38.462 0.00 0.00 0.00 3.61
1867 1890 6.540189 CACCCAGGAAGATAACTGTGAAATAG 59.460 42.308 0.00 0.00 32.90 1.73
1868 1891 6.214615 TCACCCAGGAAGATAACTGTGAAATA 59.785 38.462 0.00 0.00 32.90 1.40
1897 1920 4.130118 GAGAACCAGCAGAAACAAAGAGA 58.870 43.478 0.00 0.00 0.00 3.10
1903 1926 4.890158 TCTATGAGAACCAGCAGAAACA 57.110 40.909 0.00 0.00 0.00 2.83
1904 1927 4.633565 CCTTCTATGAGAACCAGCAGAAAC 59.366 45.833 0.00 0.00 32.63 2.78
1908 1931 4.686191 ATCCTTCTATGAGAACCAGCAG 57.314 45.455 0.00 0.00 29.89 4.24
1971 2081 1.337703 GCGATGCCATTGAAAGCCATA 59.662 47.619 0.00 0.00 0.00 2.74
2212 2324 9.130661 TCACAAACATAAGAAAGAGGATTGAAA 57.869 29.630 0.00 0.00 0.00 2.69
2251 2363 9.911788 AGTATTCATCAACAGAATGGTTAGATT 57.088 29.630 0.00 0.00 43.62 2.40
2258 2370 7.440556 CCTCAGTAGTATTCATCAACAGAATGG 59.559 40.741 0.00 0.00 43.62 3.16
2264 2376 6.867519 TTCCCTCAGTAGTATTCATCAACA 57.132 37.500 0.00 0.00 0.00 3.33
2278 2390 9.566432 GTATTTCATCATAATCTTTCCCTCAGT 57.434 33.333 0.00 0.00 0.00 3.41
2279 2391 9.790344 AGTATTTCATCATAATCTTTCCCTCAG 57.210 33.333 0.00 0.00 0.00 3.35
2285 2397 9.162793 CGCAACAGTATTTCATCATAATCTTTC 57.837 33.333 0.00 0.00 0.00 2.62
2379 2491 0.538584 TTGATGACGAGCATGAGCCT 59.461 50.000 0.00 0.00 43.56 4.58
2427 2539 4.576463 CCAACAGCAGATAGATACAAACCC 59.424 45.833 0.00 0.00 0.00 4.11
2561 2673 6.428159 AGAAGTAATCACACCAAAGATGACAC 59.572 38.462 0.00 0.00 29.52 3.67
2757 2869 7.744087 TTCTAAGCTCATGTTCTTAAAAGCA 57.256 32.000 9.48 0.00 32.25 3.91
2762 2874 7.554118 CAGGGATTTCTAAGCTCATGTTCTTAA 59.446 37.037 9.48 0.93 0.00 1.85
2823 2935 2.484889 GGTCCTCTCTTGTGTGTGTTC 58.515 52.381 0.00 0.00 0.00 3.18
2891 3003 8.409371 TGTGCAAATTTCACTGAATAAGTAACA 58.591 29.630 16.46 0.00 36.83 2.41
2943 3055 3.120321 ACTTAGCACGGACATGACAAA 57.880 42.857 0.00 0.00 0.00 2.83
3025 3155 8.589338 ACAGAGGGAGTACATATTATGTTGATC 58.411 37.037 14.23 9.84 41.63 2.92
3042 3172 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3043 3173 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3044 3174 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3045 3175 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3093 3223 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
3094 3224 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
3095 3225 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
3096 3226 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
3097 3227 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3098 3228 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3099 3229 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3100 3230 8.518702 GGTACTCCCTCCGTAAACTAATATAAG 58.481 40.741 0.00 0.00 0.00 1.73
3101 3231 8.227507 AGGTACTCCCTCCGTAAACTAATATAA 58.772 37.037 0.00 0.00 40.71 0.98
3102 3232 7.759607 AGGTACTCCCTCCGTAAACTAATATA 58.240 38.462 0.00 0.00 40.71 0.86
3103 3233 6.618501 AGGTACTCCCTCCGTAAACTAATAT 58.381 40.000 0.00 0.00 40.71 1.28
3104 3234 6.018433 AGGTACTCCCTCCGTAAACTAATA 57.982 41.667 0.00 0.00 40.71 0.98
3105 3235 4.876580 AGGTACTCCCTCCGTAAACTAAT 58.123 43.478 0.00 0.00 40.71 1.73
3106 3236 4.322057 AGGTACTCCCTCCGTAAACTAA 57.678 45.455 0.00 0.00 40.71 2.24
3108 3238 2.915657 AGGTACTCCCTCCGTAAACT 57.084 50.000 0.00 0.00 40.71 2.66
3122 3252 6.827727 TCCCTTCATAAGCTTAATGAGGTAC 58.172 40.000 21.35 0.00 34.30 3.34
3123 3253 7.127339 ACTTCCCTTCATAAGCTTAATGAGGTA 59.873 37.037 21.35 10.60 34.30 3.08
3124 3254 5.975988 TCCCTTCATAAGCTTAATGAGGT 57.024 39.130 21.35 1.59 37.82 3.85
3182 3312 8.711457 GTTGCTTTGTGATAAAATAACTGCATT 58.289 29.630 0.00 0.00 0.00 3.56
3203 3333 6.381801 GCAATGACAGTAAAAGTATGTTGCT 58.618 36.000 0.00 0.00 0.00 3.91
3231 3361 7.926555 CGACTTCATACAAAACCATAGGATAGT 59.073 37.037 0.00 0.00 0.00 2.12
3232 3362 7.385205 CCGACTTCATACAAAACCATAGGATAG 59.615 40.741 0.00 0.00 0.00 2.08
3258 3388 3.715618 TGATACGTGAACATTCGTTGC 57.284 42.857 0.00 0.00 40.70 4.17
3262 3392 6.993175 AGTGATATGATACGTGAACATTCG 57.007 37.500 0.00 0.00 0.00 3.34
3312 3442 3.251004 CAGAAATAACGGCTGCCTTATCC 59.749 47.826 17.92 13.30 0.00 2.59
3324 3454 6.371548 TGTCAAAGGGAAGATCAGAAATAACG 59.628 38.462 0.00 0.00 0.00 3.18
3457 3587 2.885894 TGTGCATTTGTGAGATTGCAGA 59.114 40.909 0.00 0.00 44.99 4.26
3804 3934 3.276857 AGCAATGATGACGAAGCATTCT 58.723 40.909 3.90 3.16 44.75 2.40
3946 4076 0.621571 TGCCATTCCCTAGTCAGCCT 60.622 55.000 0.00 0.00 0.00 4.58
4134 4264 8.730680 GGCCTATATATACACTTTCAATTGGTG 58.269 37.037 5.42 8.56 37.05 4.17
4135 4265 8.444783 TGGCCTATATATACACTTTCAATTGGT 58.555 33.333 3.32 0.00 0.00 3.67
4136 4266 8.730680 GTGGCCTATATATACACTTTCAATTGG 58.269 37.037 3.32 0.00 0.00 3.16
4137 4267 9.283768 TGTGGCCTATATATACACTTTCAATTG 57.716 33.333 3.32 0.00 33.44 2.32
4138 4268 9.507329 CTGTGGCCTATATATACACTTTCAATT 57.493 33.333 3.32 0.00 33.44 2.32
4139 4269 8.880244 TCTGTGGCCTATATATACACTTTCAAT 58.120 33.333 3.32 0.00 33.44 2.57
4140 4270 8.257602 TCTGTGGCCTATATATACACTTTCAA 57.742 34.615 3.32 0.00 33.44 2.69
4141 4271 7.849322 TCTGTGGCCTATATATACACTTTCA 57.151 36.000 3.32 0.00 33.44 2.69
4142 4272 8.368668 AGTTCTGTGGCCTATATATACACTTTC 58.631 37.037 3.32 3.32 33.44 2.62
4143 4273 8.263854 AGTTCTGTGGCCTATATATACACTTT 57.736 34.615 3.32 0.00 33.44 2.66
4196 4326 3.574396 TCATTCTCAGATACCCTAAGCCG 59.426 47.826 0.00 0.00 0.00 5.52
4202 4332 5.190528 ACAACACATCATTCTCAGATACCCT 59.809 40.000 0.00 0.00 0.00 4.34
4227 4357 3.250040 GGTGCCATCACGGTATTATCAAC 59.750 47.826 0.00 0.00 44.03 3.18
4269 4399 3.754188 ATTCGCAGCATTCAGAACTTC 57.246 42.857 0.00 0.00 0.00 3.01
4283 4413 4.142556 TGTGTAAGATCGACACTATTCGCA 60.143 41.667 25.06 8.76 46.05 5.10
4286 4416 5.892568 AGGTGTGTAAGATCGACACTATTC 58.107 41.667 25.06 16.12 46.05 1.75
4289 4419 3.693085 GGAGGTGTGTAAGATCGACACTA 59.307 47.826 25.06 14.34 46.05 2.74
4305 4435 3.817647 GCCATTAGAAATGCTAGGAGGTG 59.182 47.826 0.00 0.00 0.00 4.00
4336 4466 8.201464 ACGTATATTGTATCCTGAACATGAACA 58.799 33.333 0.00 0.00 0.00 3.18
4408 4538 7.364200 TGAGTACAAACGTTTCCCAAAATATG 58.636 34.615 11.37 0.00 0.00 1.78
4430 4560 1.495878 CGAAAGATCAGCCGGATGAG 58.504 55.000 28.29 9.34 36.00 2.90
4434 4564 1.218047 CACCGAAAGATCAGCCGGA 59.782 57.895 21.14 0.00 44.29 5.14
4472 4602 4.446413 ATCGAACGCCCACGGACC 62.446 66.667 0.00 0.00 46.04 4.46
4473 4603 2.884207 GATCGAACGCCCACGGAC 60.884 66.667 0.00 0.00 46.04 4.79
4491 4621 1.683011 CCTGGCCATCCGATCAAAACT 60.683 52.381 5.51 0.00 34.14 2.66
4592 4723 1.497161 GTACCAGGCCATGTAGTCCT 58.503 55.000 5.01 0.00 0.00 3.85
4636 4767 3.319198 GACTGTTGGAGGGGCCGA 61.319 66.667 0.00 0.00 40.66 5.54
4674 4805 0.958876 GAAATTGGGACGGCGAAGGT 60.959 55.000 16.62 0.00 0.00 3.50
4692 4823 9.293404 GATGATGAAAGAAAATATGAGGGATGA 57.707 33.333 0.00 0.00 0.00 2.92
4713 4844 2.484417 GGCCGATGACAAGTGAGATGAT 60.484 50.000 0.00 0.00 0.00 2.45
4714 4845 1.134699 GGCCGATGACAAGTGAGATGA 60.135 52.381 0.00 0.00 0.00 2.92
4717 4848 0.247460 CAGGCCGATGACAAGTGAGA 59.753 55.000 0.00 0.00 0.00 3.27
4759 4890 0.601311 GATGTAGGGCACGGAGATGC 60.601 60.000 0.00 0.00 45.34 3.91
4774 4905 1.178276 GGCGATCCCGATCTAGATGT 58.822 55.000 10.74 0.00 38.22 3.06
4845 4976 2.357034 ACGCGCCACTGAAACGAT 60.357 55.556 5.73 0.00 0.00 3.73
4896 5039 0.980231 GACAGATCAGCAGGGAGGGT 60.980 60.000 0.00 0.00 0.00 4.34
4971 5115 7.225341 CCTTCTTTGCAACAAGAGCTTTATTTT 59.775 33.333 15.92 0.00 0.00 1.82
4975 5119 4.037923 CCCTTCTTTGCAACAAGAGCTTTA 59.962 41.667 15.92 0.00 0.00 1.85
5058 5202 9.725019 TTTCAGAAACACATAGATGACTATTGT 57.275 29.630 0.00 0.00 37.24 2.71
5070 5214 7.601856 CAAGGGCTTTATTTCAGAAACACATA 58.398 34.615 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.