AutoCloner

Multiple sequence alignment - TraesCS2A01G175500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G175500	chr2A	100.000	3449	0	0	1	3449	133963900	133960452	0.000000e+00	6370.0
1	TraesCS2A01G175500	chr2D	96.927	2701	58	8	766	3449	127088998	127086306	0.000000e+00	4505.0
2	TraesCS2A01G175500	chr2D	97.049	610	18	0	1	610	468167123	468166514	0.000000e+00	1027.0
3	TraesCS2A01G175500	chr2B	96.630	2700	65	7	766	3449	180823872	180821183	0.000000e+00	4458.0
4	TraesCS2A01G175500	chr4D	94.744	761	33	2	1	761	207744037	207743284	0.000000e+00	1177.0
5	TraesCS2A01G175500	chr4D	92.378	761	47	8	4	761	19341444	19340692	0.000000e+00	1074.0
6	TraesCS2A01G175500	chr4D	91.667	132	11	0	630	761	489511264	489511133	2.110000e-42	183.0
7	TraesCS2A01G175500	chr3D	96.825	630	20	0	1	630	101711153	101710524	0.000000e+00	1053.0
8	TraesCS2A01G175500	chr3D	95.893	633	23	2	1	630	357079980	357080612	0.000000e+00	1022.0
9	TraesCS2A01G175500	chr3D	91.603	131	11	0	630	760	114125214	114125084	7.600000e-42	182.0
10	TraesCS2A01G175500	chr4A	96.508	630	22	0	1	630	690127915	690127286	0.000000e+00	1042.0
11	TraesCS2A01G175500	chr1A	96.508	630	21	1	1	630	143802660	143803288	0.000000e+00	1040.0
12	TraesCS2A01G175500	chr7D	96.508	630	19	1	1	630	521760828	521760202	0.000000e+00	1038.0
13	TraesCS2A01G175500	chr7D	92.366	131	10	0	630	760	587752682	587752552	1.630000e-43	187.0
14	TraesCS2A01G175500	chr5D	96.343	629	23	0	1	629	553985059	553985687	0.000000e+00	1035.0
15	TraesCS2A01G175500	chr3B	92.481	133	9	1	630	761	405405473	405405341	4.540000e-44	189.0
16	TraesCS2A01G175500	chr1B	92.424	132	10	0	635	766	464485683	464485552	4.540000e-44	189.0
17	TraesCS2A01G175500	chr6D	92.366	131	10	0	630	760	65085450	65085320	1.630000e-43	187.0
18	TraesCS2A01G175500	chr5B	93.548	124	8	0	635	758	671348850	671348973	5.880000e-43	185.0
19	TraesCS2A01G175500	chrUn	91.603	131	11	0	630	760	359158803	359158933	7.600000e-42	182.0
20	TraesCS2A01G175500	chr7A	91.045	134	12	0	630	763	450086316	450086183	7.600000e-42	182.0
21	TraesCS2A01G175500	chr7A	100.000	28	0	0	1007	1034	195516754	195516727	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G175500	chr2A	133960452	133963900	3448	True	6370	6370	100.000	1	3449	1	chr2A.!!$R1	3448
1	TraesCS2A01G175500	chr2D	127086306	127088998	2692	True	4505	4505	96.927	766	3449	1	chr2D.!!$R1	2683
2	TraesCS2A01G175500	chr2D	468166514	468167123	609	True	1027	1027	97.049	1	610	1	chr2D.!!$R2	609
3	TraesCS2A01G175500	chr2B	180821183	180823872	2689	True	4458	4458	96.630	766	3449	1	chr2B.!!$R1	2683
4	TraesCS2A01G175500	chr4D	207743284	207744037	753	True	1177	1177	94.744	1	761	1	chr4D.!!$R2	760
5	TraesCS2A01G175500	chr4D	19340692	19341444	752	True	1074	1074	92.378	4	761	1	chr4D.!!$R1	757
6	TraesCS2A01G175500	chr3D	101710524	101711153	629	True	1053	1053	96.825	1	630	1	chr3D.!!$R1	629
7	TraesCS2A01G175500	chr3D	357079980	357080612	632	False	1022	1022	95.893	1	630	1	chr3D.!!$F1	629
8	TraesCS2A01G175500	chr4A	690127286	690127915	629	True	1042	1042	96.508	1	630	1	chr4A.!!$R1	629
9	TraesCS2A01G175500	chr1A	143802660	143803288	628	False	1040	1040	96.508	1	630	1	chr1A.!!$F1	629
10	TraesCS2A01G175500	chr7D	521760202	521760828	626	True	1038	1038	96.508	1	630	1	chr7D.!!$R1	629
11	TraesCS2A01G175500	chr5D	553985059	553985687	628	False	1035	1035	96.343	1	629	1	chr5D.!!$F1	628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
362	366	0.249699	TGGTGGTGCGTTGTCTACTG	60.250	55.0	0.0	0.0	0.00	2.74	F
2151	2179	0.108585	ATGCTGTCAAGGTGTTCCGT	59.891	50.0	0.0	0.0	39.05	4.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2247	2275	0.107945	CTACTGCCTCCCTGAACAGC	60.108	60.0	0.0	0.0	33.35	4.40	R
3154	3193	0.106519	CCCCCAAGCCTACATTCCAG	60.107	60.0	0.0	0.0	0.00	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	3.152341	AGTCAAAGGAGACATTGGCAAG	58.848	45.455	5.96	0.50	45.57	4.01
102	103	4.511826	GGAGACAAAGCTTATTATCACCGG	59.488	45.833	0.00	0.00	0.00	5.28
173	174	3.899981	AAGCGCAAGGCCGACATGA	62.900	57.895	11.47	0.00	45.17	3.07
293	294	1.523154	GCAATTGGCGTGGTGGAAGA	61.523	55.000	7.72	0.00	0.00	2.87
354	358	4.497984	TGCTGGTGGTGGTGCGTT	62.498	61.111	0.00	0.00	0.00	4.84
362	366	0.249699	TGGTGGTGCGTTGTCTACTG	60.250	55.000	0.00	0.00	0.00	2.74
465	470	8.274939	CGTTTTATGTTTTGCAAATGATGTCTT	58.725	29.630	13.65	1.82	0.00	3.01
467	472	8.883954	TTTATGTTTTGCAAATGATGTCTTCA	57.116	26.923	13.65	2.61	39.12	3.02
468	473	8.523523	TTATGTTTTGCAAATGATGTCTTCAG	57.476	30.769	13.65	0.00	37.89	3.02
597	602	9.261180	GATCATGATCATTTGCAAATTTGAGAT	57.739	29.630	27.30	19.54	37.74	2.75
630	635	3.513515	TGCTGTCCTGTTTTGAAGGTTTT	59.486	39.130	0.00	0.00	36.14	2.43
631	636	4.112634	GCTGTCCTGTTTTGAAGGTTTTC	58.887	43.478	0.00	0.00	36.14	2.29
632	637	4.142160	GCTGTCCTGTTTTGAAGGTTTTCT	60.142	41.667	0.00	0.00	36.14	2.52
634	639	4.770010	TGTCCTGTTTTGAAGGTTTTCTGT	59.230	37.500	0.00	0.00	36.14	3.41
635	640	5.245075	TGTCCTGTTTTGAAGGTTTTCTGTT	59.755	36.000	0.00	0.00	36.14	3.16
636	641	6.163476	GTCCTGTTTTGAAGGTTTTCTGTTT	58.837	36.000	0.00	0.00	36.14	2.83
664	669	2.265367	TGGTTTGAGGGCACTGATCTA	58.735	47.619	0.00	0.00	0.00	1.98
665	670	2.027192	TGGTTTGAGGGCACTGATCTAC	60.027	50.000	0.00	0.00	0.00	2.59
668	673	1.557099	TGAGGGCACTGATCTACGTT	58.443	50.000	0.00	0.00	0.00	3.99
671	676	2.032620	AGGGCACTGATCTACGTTAGG	58.967	52.381	0.00	0.00	0.00	2.69
678	683	5.234543	GCACTGATCTACGTTAGGGATTTTC	59.765	44.000	0.00	0.00	0.00	2.29
682	697	2.762327	TCTACGTTAGGGATTTTCGGCT	59.238	45.455	0.00	0.00	0.00	5.52
685	700	3.151554	ACGTTAGGGATTTTCGGCTTTT	58.848	40.909	0.00	0.00	0.00	2.27
714	729	6.049149	CGATATTTTCTCAGCCCTCAAACTA	58.951	40.000	0.00	0.00	0.00	2.24
737	752	8.581578	ACTAGTTTTGAAGGTTGAGTTTTTGAA	58.418	29.630	0.00	0.00	0.00	2.69
742	757	4.466015	TGAAGGTTGAGTTTTTGAAGGCTT	59.534	37.500	0.00	0.00	0.00	4.35
758	773	4.026356	AGGCTTTGTTAGACATGCTCTT	57.974	40.909	0.00	0.00	32.58	2.85
761	776	4.938226	GGCTTTGTTAGACATGCTCTTAGT	59.062	41.667	0.00	0.00	31.65	2.24
762	777	6.070767	AGGCTTTGTTAGACATGCTCTTAGTA	60.071	38.462	0.00	0.00	32.58	1.82
763	778	6.763610	GGCTTTGTTAGACATGCTCTTAGTAT	59.236	38.462	0.00	0.00	31.65	2.12
764	779	7.254590	GGCTTTGTTAGACATGCTCTTAGTATG	60.255	40.741	3.80	3.80	42.87	2.39
805	820	5.297776	CACACCTTTGAAATAGCCTAGGATG	59.702	44.000	14.75	0.00	0.00	3.51
806	821	4.276926	CACCTTTGAAATAGCCTAGGATGC	59.723	45.833	14.75	0.00	0.00	3.91
808	823	4.276926	CCTTTGAAATAGCCTAGGATGCAC	59.723	45.833	14.75	0.61	0.00	4.57
811	826	5.116084	TGAAATAGCCTAGGATGCACTTT	57.884	39.130	14.75	5.72	0.00	2.66
812	827	5.126067	TGAAATAGCCTAGGATGCACTTTC	58.874	41.667	14.75	14.45	34.59	2.62
813	828	4.778213	AATAGCCTAGGATGCACTTTCA	57.222	40.909	14.75	0.00	0.00	2.69
814	829	2.409948	AGCCTAGGATGCACTTTCAC	57.590	50.000	14.75	0.00	0.00	3.18
815	830	1.912043	AGCCTAGGATGCACTTTCACT	59.088	47.619	14.75	0.00	0.00	3.41
816	831	2.307098	AGCCTAGGATGCACTTTCACTT	59.693	45.455	14.75	0.00	0.00	3.16
817	832	3.519510	AGCCTAGGATGCACTTTCACTTA	59.480	43.478	14.75	0.00	0.00	2.24
824	840	6.739112	AGGATGCACTTTCACTTAAGTTTTC	58.261	36.000	5.07	0.00	36.24	2.29
970	998	0.917533	GAAACCTCCCCTAACCCTCC	59.082	60.000	0.00	0.00	0.00	4.30
992	1020	1.228737	CTCCCTCGATCTCCTCCCC	60.229	68.421	0.00	0.00	0.00	4.81
994	1022	0.403008	TCCCTCGATCTCCTCCCCTA	60.403	60.000	0.00	0.00	0.00	3.53
996	1024	0.251430	CCTCGATCTCCTCCCCTACC	60.251	65.000	0.00	0.00	0.00	3.18
1171	1199	3.036429	AAGCTCTCATCCACCCCGC	62.036	63.158	0.00	0.00	0.00	6.13
1698	1726	0.744414	TTGACCATGCGCTAAGGCTC	60.744	55.000	9.73	8.57	36.09	4.70
1794	1822	1.600636	CTGCCGCAAGAAAGACCCA	60.601	57.895	0.00	0.00	43.02	4.51
1926	1954	3.552875	CAGGACTGAGGATGCAATGAAT	58.447	45.455	0.00	0.00	0.00	2.57
2015	2043	2.124507	TTGTACCAGGCTGCCAGGAC	62.125	60.000	33.62	25.02	34.08	3.85
2047	2075	4.580167	GGGACGAATTGATGATTTGGATGA	59.420	41.667	0.00	0.00	34.01	2.92
2151	2179	0.108585	ATGCTGTCAAGGTGTTCCGT	59.891	50.000	0.00	0.00	39.05	4.69
2197	2225	5.300752	CACCTGGAACGAAATCATATAGCT	58.699	41.667	0.00	0.00	0.00	3.32
2247	2275	1.948104	TAGGGGATCGTTCAAATGCG	58.052	50.000	0.00	0.00	0.00	4.73
2526	2554	5.045215	TGTTCTTTGCTTCAGAATTTGCTG	58.955	37.500	0.00	0.00	32.86	4.41
2527	2555	4.924305	TCTTTGCTTCAGAATTTGCTGT	57.076	36.364	0.00	0.00	37.20	4.40
2528	2556	5.266733	TCTTTGCTTCAGAATTTGCTGTT	57.733	34.783	0.00	0.00	37.20	3.16
2536	2564	4.469657	TCAGAATTTGCTGTTTAGGTGGT	58.530	39.130	0.00	0.00	37.20	4.16
2611	2639	6.652481	GCATATCCTACATCAGTGCACTTAAT	59.348	38.462	18.94	11.23	0.00	1.40
2621	2649	5.616270	TCAGTGCACTTAATTGTAGGAACA	58.384	37.500	18.94	0.00	0.00	3.18
2634	2662	0.753262	AGGAACACGCAGAACTCTGT	59.247	50.000	8.46	0.00	45.45	3.41
2774	2813	1.276989	GGAACACTGGGTGTCGGATAA	59.723	52.381	3.74	0.00	46.79	1.75
2786	2825	4.873827	GGTGTCGGATAAGCTGTTAAATCA	59.126	41.667	0.00	0.00	0.00	2.57
2837	2876	7.497909	AGAAACGAGAAGGAAGTTTGTGAAATA	59.502	33.333	0.00	0.00	38.09	1.40
2895	2934	0.687354	AGTGGGATTGCTCAACTCGT	59.313	50.000	0.00	0.00	0.00	4.18
2955	2994	4.569162	CCCAATCGCTGATAGTTAAACGAA	59.431	41.667	0.00	0.00	32.79	3.85
3058	3097	3.769300	GGGTGCTTCATTTTTCCCTGTAT	59.231	43.478	0.00	0.00	32.89	2.29
3059	3098	4.381932	GGGTGCTTCATTTTTCCCTGTATG	60.382	45.833	0.00	0.00	32.89	2.39
3125	3164	5.981088	TTCGACAACCCACTACACTAATA	57.019	39.130	0.00	0.00	0.00	0.98
3154	3193	2.289694	TGCCTTAGTGCTTCAAGACTCC	60.290	50.000	0.00	0.00	0.00	3.85
3342	3381	4.295201	ACTGGATAATGGTAGGTACAGCA	58.705	43.478	0.00	0.00	0.00	4.41
3436	3475	1.757682	TTCCCAATGTTATCACGCCC	58.242	50.000	0.00	0.00	0.00	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	0.255318	CCCTCAAGCTTGATGCCTCT	59.745	55.000	28.57	0.00	44.23	3.69
69	70	1.203287	GCTTTGTCTCCAATGCCTTCC	59.797	52.381	0.00	0.00	42.74	3.46
102	103	5.923114	GCAAATTTCACCTCTTTCTTTCTCC	59.077	40.000	0.00	0.00	0.00	3.71
173	174	3.382278	TGAGCTTGATCATCCTCTCCTT	58.618	45.455	18.44	0.00	0.00	3.36
293	294	2.607187	CGCGATGTTCTCCTTGTACTT	58.393	47.619	0.00	0.00	0.00	2.24
354	358	1.073444	ACTCACCTCGGACAGTAGACA	59.927	52.381	0.00	0.00	0.00	3.41
362	366	0.748729	ATCGGAGACTCACCTCGGAC	60.749	60.000	4.53	0.00	42.59	4.79
465	470	6.720112	TGATCATCATCACATAGTCACTGA	57.280	37.500	0.00	0.00	33.80	3.41
467	472	7.041303	GCAAATGATCATCATCACATAGTCACT	60.041	37.037	9.06	0.00	42.05	3.41
468	473	7.076362	GCAAATGATCATCATCACATAGTCAC	58.924	38.462	9.06	0.00	42.05	3.67
597	602	6.403866	AAACAGGACAGCAACATAAATCAA	57.596	33.333	0.00	0.00	0.00	2.57
630	635	3.699038	CTCAAACCAACCCTCAAAACAGA	59.301	43.478	0.00	0.00	0.00	3.41
631	636	3.181476	CCTCAAACCAACCCTCAAAACAG	60.181	47.826	0.00	0.00	0.00	3.16
632	637	2.763448	CCTCAAACCAACCCTCAAAACA	59.237	45.455	0.00	0.00	0.00	2.83
634	639	2.393646	CCCTCAAACCAACCCTCAAAA	58.606	47.619	0.00	0.00	0.00	2.44
635	640	2.032151	GCCCTCAAACCAACCCTCAAA	61.032	52.381	0.00	0.00	0.00	2.69
636	641	0.469144	GCCCTCAAACCAACCCTCAA	60.469	55.000	0.00	0.00	0.00	3.02
664	669	2.484742	AAGCCGAAAATCCCTAACGT	57.515	45.000	0.00	0.00	0.00	3.99
665	670	3.842732	AAAAGCCGAAAATCCCTAACG	57.157	42.857	0.00	0.00	0.00	3.18
668	673	5.472820	TCGTTTTAAAAGCCGAAAATCCCTA	59.527	36.000	10.24	0.00	0.00	3.53
671	676	7.980742	ATATCGTTTTAAAAGCCGAAAATCC	57.019	32.000	15.02	0.00	32.53	3.01
678	683	7.253321	GCTGAGAAAATATCGTTTTAAAAGCCG	60.253	37.037	0.00	2.78	0.00	5.52
682	697	8.117813	AGGGCTGAGAAAATATCGTTTTAAAA	57.882	30.769	0.00	0.00	0.00	1.52
685	700	6.411376	TGAGGGCTGAGAAAATATCGTTTTA	58.589	36.000	0.00	0.00	0.00	1.52
714	729	6.873605	CCTTCAAAAACTCAACCTTCAAAACT	59.126	34.615	0.00	0.00	0.00	2.66
737	752	3.710209	AGAGCATGTCTAACAAAGCCT	57.290	42.857	0.00	1.09	34.90	4.58
742	757	7.836842	TGACATACTAAGAGCATGTCTAACAA	58.163	34.615	16.84	0.00	45.66	2.83
758	773	3.620427	ATGGGCGTGTTTGACATACTA	57.380	42.857	0.00	0.00	0.00	1.82
761	776	3.874543	GTGATATGGGCGTGTTTGACATA	59.125	43.478	0.00	0.00	0.00	2.29
762	777	2.682856	GTGATATGGGCGTGTTTGACAT	59.317	45.455	0.00	0.00	0.00	3.06
763	778	2.080693	GTGATATGGGCGTGTTTGACA	58.919	47.619	0.00	0.00	0.00	3.58
764	779	2.080693	TGTGATATGGGCGTGTTTGAC	58.919	47.619	0.00	0.00	0.00	3.18
805	820	8.905103	TGTAAAGAAAACTTAAGTGAAAGTGC	57.095	30.769	9.34	0.00	39.62	4.40
824	840	8.233868	TCCATTCAATCGTGTAAACATGTAAAG	58.766	33.333	0.00	0.00	34.59	1.85
970	998	1.228124	AGGAGATCGAGGGAGCGAG	60.228	63.158	0.00	0.00	44.26	5.03
1296	1324	2.260434	CGGACGAGGAAGCGGAAA	59.740	61.111	0.00	0.00	35.12	3.13
1698	1726	1.660607	CCATTTCGTGTCTCACCGATG	59.339	52.381	0.00	0.00	0.00	3.84
1926	1954	0.953471	CGCCCATTTGTCGGAACAGA	60.953	55.000	0.00	0.00	36.57	3.41
2015	2043	1.555075	TCAATTCGTCCCCTTCAGAGG	59.445	52.381	0.00	0.00	43.15	3.69
2028	2056	5.530171	AGACCTCATCCAAATCATCAATTCG	59.470	40.000	0.00	0.00	0.00	3.34
2047	2075	1.140312	TCTCCAAAACCTGCAGACCT	58.860	50.000	17.39	0.00	0.00	3.85
2151	2179	2.115427	TGCCCGTATCCTTTCATCAGA	58.885	47.619	0.00	0.00	0.00	3.27
2197	2225	1.171308	GCCAGCTTCTCAATCAGCAA	58.829	50.000	0.00	0.00	38.61	3.91
2247	2275	0.107945	CTACTGCCTCCCTGAACAGC	60.108	60.000	0.00	0.00	33.35	4.40
2275	2303	0.677842	ACTCCTGGTGTCACGGTAAC	59.322	55.000	0.00	0.00	0.00	2.50
2430	2458	2.436646	CAAGCCCTCATTCGCCGT	60.437	61.111	0.00	0.00	0.00	5.68
2526	2554	3.116079	TCCGAAACAGACCACCTAAAC	57.884	47.619	0.00	0.00	0.00	2.01
2527	2555	4.618927	CGTATCCGAAACAGACCACCTAAA	60.619	45.833	0.00	0.00	35.63	1.85
2528	2556	3.119388	CGTATCCGAAACAGACCACCTAA	60.119	47.826	0.00	0.00	35.63	2.69
2611	2639	2.364324	AGAGTTCTGCGTGTTCCTACAA	59.636	45.455	0.00	0.00	35.69	2.41
2634	2662	5.189928	TCGGCATATCAGCTCCTTTAAAAA	58.810	37.500	0.00	0.00	34.17	1.94
2837	2876	1.824852	CCGCCCTAGCCAAAATTTCTT	59.175	47.619	0.00	0.00	34.57	2.52
2955	2994	7.108847	CCTCAATTTCTCAGTCCAACTCTAAT	58.891	38.462	0.00	0.00	0.00	1.73
3058	3097	3.275143	TGAGTTGTTCTTTCCGCTTTCA	58.725	40.909	0.00	0.00	0.00	2.69
3059	3098	3.963383	TGAGTTGTTCTTTCCGCTTTC	57.037	42.857	0.00	0.00	0.00	2.62
3125	3164	3.009033	TGAAGCACTAAGGCACTATGGTT	59.991	43.478	0.00	0.00	38.49	3.67
3154	3193	0.106519	CCCCCAAGCCTACATTCCAG	60.107	60.000	0.00	0.00	0.00	3.86
3278	3317	5.865552	CCATGATTCTTGGTTTTAAGCACAG	59.134	40.000	9.84	0.00	35.94	3.66
3342	3381	5.122396	GCAGAAAGTACATCCACGATTCTTT	59.878	40.000	0.00	0.00	31.40	2.52
3418	3457	0.106918	GGGGCGTGATAACATTGGGA	60.107	55.000	0.00	0.00	0.00	4.37

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.