Multiple sequence alignment - TraesCS2A01G174900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G174900 chr2A 100.000 2678 0 0 1 2678 133483883 133486560 0.000000e+00 4946
1 TraesCS2A01G174900 chr2A 95.939 788 28 3 1891 2678 623320533 623321316 0.000000e+00 1275
2 TraesCS2A01G174900 chr2A 93.333 285 14 3 635 918 209205054 209204774 1.480000e-112 416
3 TraesCS2A01G174900 chr2A 75.951 657 128 22 1011 1650 133474081 133474724 7.200000e-81 311
4 TraesCS2A01G174900 chr2A 75.576 651 127 20 1025 1650 133473118 133473761 2.610000e-75 292
5 TraesCS2A01G174900 chr7B 99.312 1018 6 1 1661 2678 74836781 74837797 0.000000e+00 1840
6 TraesCS2A01G174900 chr7B 98.918 1017 11 0 1662 2678 17219219 17218203 0.000000e+00 1818
7 TraesCS2A01G174900 chr7B 94.797 788 26 5 1891 2678 726694156 726694928 0.000000e+00 1214
8 TraesCS2A01G174900 chr3B 99.116 1018 9 0 1661 2678 413960642 413961659 0.000000e+00 1831
9 TraesCS2A01G174900 chr3B 97.436 234 6 0 1659 1892 526239414 526239647 1.490000e-107 399
10 TraesCS2A01G174900 chr4B 96.827 788 21 3 1891 2678 172761458 172762241 0.000000e+00 1314
11 TraesCS2A01G174900 chr5B 96.574 788 23 3 1891 2678 128250215 128249432 0.000000e+00 1303
12 TraesCS2A01G174900 chr5B 97.845 232 4 1 1662 1892 32048482 32048713 1.490000e-107 399
13 TraesCS2A01G174900 chr5B 94.937 237 7 2 1661 1892 641547885 641548121 1.510000e-97 366
14 TraesCS2A01G174900 chr5B 89.720 107 7 2 2401 2503 399298602 399298708 1.670000e-27 134
15 TraesCS2A01G174900 chr2B 93.462 673 41 1 987 1659 180546218 180546887 0.000000e+00 996
16 TraesCS2A01G174900 chr2B 76.271 649 126 17 1025 1650 180539921 180540564 1.200000e-83 320
17 TraesCS2A01G174900 chr2B 81.250 208 17 7 1 186 180545262 180545469 5.970000e-32 148
18 TraesCS2A01G174900 chr2B 86.325 117 16 0 401 517 180546027 180546143 7.780000e-26 128
19 TraesCS2A01G174900 chr2D 92.687 670 45 3 987 1653 126958576 126959244 0.000000e+00 963
20 TraesCS2A01G174900 chr2D 76.248 661 119 29 1011 1650 126947632 126948275 1.550000e-82 316
21 TraesCS2A01G174900 chr2D 76.131 641 125 19 1025 1642 126946654 126947289 7.200000e-81 311
22 TraesCS2A01G174900 chr2D 89.956 229 21 1 407 635 126953544 126953770 7.250000e-76 294
23 TraesCS2A01G174900 chr2D 90.566 159 14 1 242 399 126953335 126953493 2.700000e-50 209
24 TraesCS2A01G174900 chr2D 89.815 108 11 0 1 108 126952809 126952916 3.590000e-29 139
25 TraesCS2A01G174900 chr5D 84.551 602 61 11 1915 2505 101264527 101263947 3.870000e-158 568
26 TraesCS2A01G174900 chr5D 87.619 105 11 2 2493 2597 101264006 101263904 1.300000e-23 121
27 TraesCS2A01G174900 chr6A 94.366 284 13 2 636 918 536663017 536663298 1.470000e-117 433
28 TraesCS2A01G174900 chr5A 93.662 284 15 2 635 918 55740651 55740931 3.190000e-114 422
29 TraesCS2A01G174900 chr5A 92.982 285 17 2 635 918 370265612 370265894 1.920000e-111 412
30 TraesCS2A01G174900 chr6D 92.606 284 19 1 635 918 23634908 23635189 8.930000e-110 407
31 TraesCS2A01G174900 chrUn 98.268 231 4 0 1662 1892 312484339 312484569 3.210000e-109 405
32 TraesCS2A01G174900 chrUn 95.690 232 9 1 1662 1892 321746445 321746214 3.260000e-99 372
33 TraesCS2A01G174900 chrUn 95.431 197 7 1 1662 1856 410949512 410949316 2.000000e-81 313
34 TraesCS2A01G174900 chr3A 92.254 284 20 1 635 918 738234845 738235126 4.150000e-108 401
35 TraesCS2A01G174900 chr1B 91.986 287 18 4 635 918 629839650 629839366 5.370000e-107 398
36 TraesCS2A01G174900 chr7D 92.199 282 19 2 638 918 595915555 595915276 1.930000e-106 396
37 TraesCS2A01G174900 chr7A 91.549 284 22 2 635 918 403170394 403170675 8.990000e-105 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G174900 chr2A 133483883 133486560 2677 False 4946.0 4946 100.000000 1 2678 1 chr2A.!!$F1 2677
1 TraesCS2A01G174900 chr2A 623320533 623321316 783 False 1275.0 1275 95.939000 1891 2678 1 chr2A.!!$F2 787
2 TraesCS2A01G174900 chr2A 133473118 133474724 1606 False 301.5 311 75.763500 1011 1650 2 chr2A.!!$F3 639
3 TraesCS2A01G174900 chr7B 74836781 74837797 1016 False 1840.0 1840 99.312000 1661 2678 1 chr7B.!!$F1 1017
4 TraesCS2A01G174900 chr7B 17218203 17219219 1016 True 1818.0 1818 98.918000 1662 2678 1 chr7B.!!$R1 1016
5 TraesCS2A01G174900 chr7B 726694156 726694928 772 False 1214.0 1214 94.797000 1891 2678 1 chr7B.!!$F2 787
6 TraesCS2A01G174900 chr3B 413960642 413961659 1017 False 1831.0 1831 99.116000 1661 2678 1 chr3B.!!$F1 1017
7 TraesCS2A01G174900 chr4B 172761458 172762241 783 False 1314.0 1314 96.827000 1891 2678 1 chr4B.!!$F1 787
8 TraesCS2A01G174900 chr5B 128249432 128250215 783 True 1303.0 1303 96.574000 1891 2678 1 chr5B.!!$R1 787
9 TraesCS2A01G174900 chr2B 180545262 180546887 1625 False 424.0 996 87.012333 1 1659 3 chr2B.!!$F2 1658
10 TraesCS2A01G174900 chr2B 180539921 180540564 643 False 320.0 320 76.271000 1025 1650 1 chr2B.!!$F1 625
11 TraesCS2A01G174900 chr2D 126958576 126959244 668 False 963.0 963 92.687000 987 1653 1 chr2D.!!$F1 666
12 TraesCS2A01G174900 chr2D 126946654 126948275 1621 False 313.5 316 76.189500 1011 1650 2 chr2D.!!$F2 639
13 TraesCS2A01G174900 chr2D 126952809 126953770 961 False 214.0 294 90.112333 1 635 3 chr2D.!!$F3 634
14 TraesCS2A01G174900 chr5D 101263904 101264527 623 True 344.5 568 86.085000 1915 2597 2 chr5D.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 1061 0.034186 TAGCATGCAAGGGGGAAGTG 60.034 55.0 21.98 0.0 0.00 3.16 F
769 1164 0.178964 TCCAAGAGGGGCAAACCAAG 60.179 55.0 0.00 0.0 42.91 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 3015 0.538287 GACTGGGTGCCTCAAAGCTT 60.538 55.0 0.00 0.0 0.00 3.74 R
2393 3802 0.879765 GCTGCTGCAAGAACATCTGT 59.120 50.0 11.11 0.0 39.41 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.630878 ACCTTTCCAAGAAGAGCCGAT 59.369 47.619 0.00 0.00 0.00 4.18
69 70 5.008118 CCTTTCCAAGAAGAGCCGATTATTC 59.992 44.000 0.00 0.00 0.00 1.75
79 80 1.139989 CCGATTATTCGCGATGCACT 58.860 50.000 10.88 0.00 44.12 4.40
84 85 4.148174 CGATTATTCGCGATGCACTAAAGA 59.852 41.667 10.88 0.00 38.75 2.52
93 94 4.105486 CGATGCACTAAAGATGAAGACGA 58.895 43.478 0.00 0.00 0.00 4.20
98 99 2.230508 ACTAAAGATGAAGACGACGGCA 59.769 45.455 2.19 0.00 0.00 5.69
132 155 2.130426 GGCCTCAGATGAGAGCGGA 61.130 63.158 11.44 0.00 44.74 5.54
141 164 3.496884 CAGATGAGAGCGGACTAGAGTAC 59.503 52.174 0.00 0.00 0.00 2.73
142 165 3.134985 AGATGAGAGCGGACTAGAGTACA 59.865 47.826 0.00 0.00 0.00 2.90
186 209 2.214181 CTGAGGTTGACCGGTCGAGG 62.214 65.000 28.70 11.25 42.08 4.63
188 211 2.048503 GGTTGACCGGTCGAGGTG 60.049 66.667 28.70 0.00 46.09 4.00
189 212 2.048503 GTTGACCGGTCGAGGTGG 60.049 66.667 28.70 0.00 46.09 4.61
190 213 2.522436 TTGACCGGTCGAGGTGGT 60.522 61.111 28.70 1.73 46.09 4.16
191 214 2.863346 TTGACCGGTCGAGGTGGTG 61.863 63.158 28.70 0.00 46.09 4.17
192 215 4.065281 GACCGGTCGAGGTGGTGG 62.065 72.222 20.85 0.00 46.09 4.61
193 216 4.928140 ACCGGTCGAGGTGGTGGT 62.928 66.667 0.00 0.00 44.07 4.16
194 217 4.373116 CCGGTCGAGGTGGTGGTG 62.373 72.222 0.00 0.00 0.00 4.17
195 218 4.373116 CGGTCGAGGTGGTGGTGG 62.373 72.222 0.00 0.00 0.00 4.61
197 220 2.030562 GTCGAGGTGGTGGTGGTG 59.969 66.667 0.00 0.00 0.00 4.17
198 221 2.445085 TCGAGGTGGTGGTGGTGT 60.445 61.111 0.00 0.00 0.00 4.16
199 222 2.067605 TCGAGGTGGTGGTGGTGTT 61.068 57.895 0.00 0.00 0.00 3.32
200 223 1.153046 CGAGGTGGTGGTGGTGTTT 60.153 57.895 0.00 0.00 0.00 2.83
201 224 1.444119 CGAGGTGGTGGTGGTGTTTG 61.444 60.000 0.00 0.00 0.00 2.93
204 227 1.076632 GTGGTGGTGGTGTTTGGGA 60.077 57.895 0.00 0.00 0.00 4.37
206 229 1.530655 GGTGGTGGTGTTTGGGAGG 60.531 63.158 0.00 0.00 0.00 4.30
207 230 1.530655 GTGGTGGTGTTTGGGAGGG 60.531 63.158 0.00 0.00 0.00 4.30
208 231 2.117423 GGTGGTGTTTGGGAGGGG 59.883 66.667 0.00 0.00 0.00 4.79
209 232 2.117423 GTGGTGTTTGGGAGGGGG 59.883 66.667 0.00 0.00 0.00 5.40
224 247 2.290745 GGGGGTAGAGGGATGCCT 59.709 66.667 4.97 4.97 0.00 4.75
225 248 2.150051 GGGGGTAGAGGGATGCCTG 61.150 68.421 12.02 0.00 0.00 4.85
226 249 2.150051 GGGGTAGAGGGATGCCTGG 61.150 68.421 12.02 0.00 0.00 4.45
227 250 2.150051 GGGTAGAGGGATGCCTGGG 61.150 68.421 12.02 0.00 0.00 4.45
228 251 2.150051 GGTAGAGGGATGCCTGGGG 61.150 68.421 12.02 0.00 0.00 4.96
229 252 1.384643 GTAGAGGGATGCCTGGGGT 60.385 63.158 12.02 0.00 0.00 4.95
230 253 1.384502 TAGAGGGATGCCTGGGGTG 60.385 63.158 12.02 0.00 0.00 4.61
231 254 1.897037 TAGAGGGATGCCTGGGGTGA 61.897 60.000 12.02 0.00 0.00 4.02
232 255 2.045132 AGGGATGCCTGGGGTGAT 59.955 61.111 4.29 0.00 0.00 3.06
233 256 2.196776 GGGATGCCTGGGGTGATG 59.803 66.667 0.00 0.00 0.00 3.07
234 257 2.386100 GGGATGCCTGGGGTGATGA 61.386 63.158 0.00 0.00 0.00 2.92
235 258 1.723128 GGGATGCCTGGGGTGATGAT 61.723 60.000 0.00 0.00 0.00 2.45
236 259 0.538977 GGATGCCTGGGGTGATGATG 60.539 60.000 0.00 0.00 0.00 3.07
237 260 0.538977 GATGCCTGGGGTGATGATGG 60.539 60.000 0.00 0.00 0.00 3.51
238 261 1.291459 ATGCCTGGGGTGATGATGGT 61.291 55.000 0.00 0.00 0.00 3.55
239 262 1.454479 GCCTGGGGTGATGATGGTG 60.454 63.158 0.00 0.00 0.00 4.17
240 263 1.228228 CCTGGGGTGATGATGGTGG 59.772 63.158 0.00 0.00 0.00 4.61
247 533 0.464036 GTGATGATGGTGGGCGAGTA 59.536 55.000 0.00 0.00 0.00 2.59
249 535 0.464036 GATGATGGTGGGCGAGTACA 59.536 55.000 0.00 0.00 0.00 2.90
251 537 0.249120 TGATGGTGGGCGAGTACAAG 59.751 55.000 0.00 0.00 0.00 3.16
264 550 3.202591 TACAAGGGGAGGCCAGGGT 62.203 63.158 5.01 0.00 0.00 4.34
266 552 3.268032 AAGGGGAGGCCAGGGTTG 61.268 66.667 5.01 0.00 0.00 3.77
284 635 3.064987 GCGAGTCGGCTCTAGGCAA 62.065 63.158 16.21 0.00 44.01 4.52
392 743 9.573133 GGTTCAAATAGAATTGATCGAAATTGT 57.427 29.630 0.00 0.00 38.98 2.71
415 810 3.719173 TTTTCCCAACAAACGCCTAAG 57.281 42.857 0.00 0.00 0.00 2.18
428 823 1.396653 GCCTAAGCTGCCACATGATT 58.603 50.000 0.00 0.00 35.50 2.57
438 833 4.280174 GCTGCCACATGATTTTGATCCTAT 59.720 41.667 0.00 0.00 0.00 2.57
443 838 6.406177 GCCACATGATTTTGATCCTATGTTGT 60.406 38.462 0.00 0.00 0.00 3.32
452 847 7.534085 TTTGATCCTATGTTGTATGTCGAAC 57.466 36.000 0.00 0.00 0.00 3.95
458 853 6.093909 TCCTATGTTGTATGTCGAACGACTTA 59.906 38.462 23.90 19.44 44.80 2.24
555 950 1.400242 GCAAACGACATCTCTTGTGGC 60.400 52.381 0.00 0.00 39.18 5.01
582 977 1.748493 TCGCCAAATATGCCAACCTTC 59.252 47.619 0.00 0.00 0.00 3.46
583 978 1.202405 CGCCAAATATGCCAACCTTCC 60.202 52.381 0.00 0.00 0.00 3.46
584 979 1.138859 GCCAAATATGCCAACCTTCCC 59.861 52.381 0.00 0.00 0.00 3.97
585 980 1.762370 CCAAATATGCCAACCTTCCCC 59.238 52.381 0.00 0.00 0.00 4.81
586 981 1.762370 CAAATATGCCAACCTTCCCCC 59.238 52.381 0.00 0.00 0.00 5.40
635 1030 5.242838 TGGCGATTCCAATAAAACAAACTCT 59.757 36.000 0.00 0.00 43.21 3.24
636 1031 5.800438 GGCGATTCCAATAAAACAAACTCTC 59.200 40.000 0.00 0.00 34.01 3.20
637 1032 5.508224 GCGATTCCAATAAAACAAACTCTCG 59.492 40.000 0.00 0.00 0.00 4.04
638 1033 6.619874 GCGATTCCAATAAAACAAACTCTCGA 60.620 38.462 0.00 0.00 0.00 4.04
639 1034 7.295201 CGATTCCAATAAAACAAACTCTCGAA 58.705 34.615 0.00 0.00 0.00 3.71
640 1035 7.801315 CGATTCCAATAAAACAAACTCTCGAAA 59.199 33.333 0.00 0.00 0.00 3.46
641 1036 9.626045 GATTCCAATAAAACAAACTCTCGAAAT 57.374 29.630 0.00 0.00 0.00 2.17
642 1037 9.981114 ATTCCAATAAAACAAACTCTCGAAATT 57.019 25.926 0.00 0.00 0.00 1.82
650 1045 9.827411 AAAACAAACTCTCGAAATTATCTTAGC 57.173 29.630 0.00 0.00 0.00 3.09
651 1046 8.547967 AACAAACTCTCGAAATTATCTTAGCA 57.452 30.769 0.00 0.00 0.00 3.49
652 1047 8.723942 ACAAACTCTCGAAATTATCTTAGCAT 57.276 30.769 0.00 0.00 0.00 3.79
653 1048 8.607459 ACAAACTCTCGAAATTATCTTAGCATG 58.393 33.333 0.00 0.00 0.00 4.06
654 1049 6.777526 ACTCTCGAAATTATCTTAGCATGC 57.222 37.500 10.51 10.51 0.00 4.06
655 1050 6.283694 ACTCTCGAAATTATCTTAGCATGCA 58.716 36.000 21.98 2.77 0.00 3.96
656 1051 6.763135 ACTCTCGAAATTATCTTAGCATGCAA 59.237 34.615 21.98 11.13 0.00 4.08
657 1052 7.042187 ACTCTCGAAATTATCTTAGCATGCAAG 60.042 37.037 21.98 19.68 0.00 4.01
658 1053 6.203530 TCTCGAAATTATCTTAGCATGCAAGG 59.796 38.462 21.98 8.91 0.00 3.61
659 1054 5.239306 TCGAAATTATCTTAGCATGCAAGGG 59.761 40.000 21.98 7.04 0.00 3.95
660 1055 5.563475 CGAAATTATCTTAGCATGCAAGGGG 60.563 44.000 21.98 5.19 0.00 4.79
661 1056 2.957402 TATCTTAGCATGCAAGGGGG 57.043 50.000 21.98 3.74 0.00 5.40
662 1057 1.225373 ATCTTAGCATGCAAGGGGGA 58.775 50.000 21.98 9.12 0.00 4.81
663 1058 0.998928 TCTTAGCATGCAAGGGGGAA 59.001 50.000 21.98 2.76 0.00 3.97
664 1059 1.064463 TCTTAGCATGCAAGGGGGAAG 60.064 52.381 21.98 10.66 0.00 3.46
665 1060 0.704076 TTAGCATGCAAGGGGGAAGT 59.296 50.000 21.98 0.00 0.00 3.01
666 1061 0.034186 TAGCATGCAAGGGGGAAGTG 60.034 55.000 21.98 0.00 0.00 3.16
667 1062 2.353610 GCATGCAAGGGGGAAGTGG 61.354 63.158 14.21 0.00 0.00 4.00
668 1063 1.383799 CATGCAAGGGGGAAGTGGA 59.616 57.895 0.00 0.00 0.00 4.02
669 1064 0.967380 CATGCAAGGGGGAAGTGGAC 60.967 60.000 0.00 0.00 0.00 4.02
670 1065 1.434513 ATGCAAGGGGGAAGTGGACA 61.435 55.000 0.00 0.00 0.00 4.02
671 1066 1.384191 GCAAGGGGGAAGTGGACAT 59.616 57.895 0.00 0.00 0.00 3.06
672 1067 0.251787 GCAAGGGGGAAGTGGACATT 60.252 55.000 0.00 0.00 0.00 2.71
673 1068 1.839424 CAAGGGGGAAGTGGACATTC 58.161 55.000 0.00 0.00 0.00 2.67
674 1069 1.355720 CAAGGGGGAAGTGGACATTCT 59.644 52.381 0.00 0.00 0.00 2.40
675 1070 2.576191 CAAGGGGGAAGTGGACATTCTA 59.424 50.000 0.00 0.00 0.00 2.10
676 1071 2.482494 AGGGGGAAGTGGACATTCTAG 58.518 52.381 0.00 0.00 0.00 2.43
677 1072 1.490910 GGGGGAAGTGGACATTCTAGG 59.509 57.143 0.00 0.00 0.00 3.02
678 1073 1.134068 GGGGAAGTGGACATTCTAGGC 60.134 57.143 0.00 0.00 0.00 3.93
679 1074 1.134068 GGGAAGTGGACATTCTAGGCC 60.134 57.143 0.00 0.00 0.00 5.19
680 1075 1.134068 GGAAGTGGACATTCTAGGCCC 60.134 57.143 0.00 0.00 0.00 5.80
681 1076 1.840635 GAAGTGGACATTCTAGGCCCT 59.159 52.381 0.00 0.00 0.00 5.19
682 1077 1.972588 AGTGGACATTCTAGGCCCTT 58.027 50.000 0.00 0.00 0.00 3.95
683 1078 3.130734 AGTGGACATTCTAGGCCCTTA 57.869 47.619 0.00 0.00 0.00 2.69
684 1079 3.669949 AGTGGACATTCTAGGCCCTTAT 58.330 45.455 0.00 0.00 0.00 1.73
685 1080 4.047883 AGTGGACATTCTAGGCCCTTATT 58.952 43.478 0.00 0.00 0.00 1.40
686 1081 4.103311 AGTGGACATTCTAGGCCCTTATTC 59.897 45.833 0.00 0.00 0.00 1.75
687 1082 3.071023 TGGACATTCTAGGCCCTTATTCG 59.929 47.826 0.00 0.00 0.00 3.34
688 1083 3.557264 GGACATTCTAGGCCCTTATTCGG 60.557 52.174 0.00 0.00 0.00 4.30
689 1084 2.224548 ACATTCTAGGCCCTTATTCGGC 60.225 50.000 0.00 0.00 46.29 5.54
696 1091 2.119671 GCCCTTATTCGGCGATTTTG 57.880 50.000 11.76 1.79 36.47 2.44
697 1092 1.673920 GCCCTTATTCGGCGATTTTGA 59.326 47.619 11.76 0.00 36.47 2.69
698 1093 2.287009 GCCCTTATTCGGCGATTTTGAG 60.287 50.000 11.76 5.17 36.47 3.02
699 1094 2.943033 CCCTTATTCGGCGATTTTGAGT 59.057 45.455 11.76 0.00 0.00 3.41
700 1095 3.242739 CCCTTATTCGGCGATTTTGAGTG 60.243 47.826 11.76 0.00 0.00 3.51
701 1096 3.621268 CCTTATTCGGCGATTTTGAGTGA 59.379 43.478 11.76 0.00 0.00 3.41
702 1097 4.494199 CCTTATTCGGCGATTTTGAGTGAC 60.494 45.833 11.76 0.00 0.00 3.67
703 1098 2.163818 TTCGGCGATTTTGAGTGACT 57.836 45.000 11.76 0.00 0.00 3.41
704 1099 1.428448 TCGGCGATTTTGAGTGACTG 58.572 50.000 4.99 0.00 0.00 3.51
705 1100 0.179215 CGGCGATTTTGAGTGACTGC 60.179 55.000 0.00 0.00 0.00 4.40
706 1101 1.160137 GGCGATTTTGAGTGACTGCT 58.840 50.000 0.00 0.00 0.00 4.24
707 1102 1.537202 GGCGATTTTGAGTGACTGCTT 59.463 47.619 0.00 0.00 0.00 3.91
708 1103 2.030805 GGCGATTTTGAGTGACTGCTTT 60.031 45.455 0.00 0.00 0.00 3.51
709 1104 3.188460 GGCGATTTTGAGTGACTGCTTTA 59.812 43.478 0.00 0.00 0.00 1.85
710 1105 4.142600 GGCGATTTTGAGTGACTGCTTTAT 60.143 41.667 0.00 0.00 0.00 1.40
711 1106 5.064707 GGCGATTTTGAGTGACTGCTTTATA 59.935 40.000 0.00 0.00 0.00 0.98
712 1107 6.238484 GGCGATTTTGAGTGACTGCTTTATAT 60.238 38.462 0.00 0.00 0.00 0.86
713 1108 7.189512 GCGATTTTGAGTGACTGCTTTATATT 58.810 34.615 0.00 0.00 0.00 1.28
714 1109 8.335356 GCGATTTTGAGTGACTGCTTTATATTA 58.665 33.333 0.00 0.00 0.00 0.98
715 1110 9.855361 CGATTTTGAGTGACTGCTTTATATTAG 57.145 33.333 0.00 0.00 0.00 1.73
716 1111 9.657121 GATTTTGAGTGACTGCTTTATATTAGC 57.343 33.333 0.00 3.28 39.10 3.09
717 1112 8.792830 TTTTGAGTGACTGCTTTATATTAGCT 57.207 30.769 0.00 0.00 39.38 3.32
718 1113 8.792830 TTTGAGTGACTGCTTTATATTAGCTT 57.207 30.769 0.00 0.00 39.38 3.74
719 1114 9.884636 TTTGAGTGACTGCTTTATATTAGCTTA 57.115 29.630 0.00 0.00 39.38 3.09
720 1115 9.884636 TTGAGTGACTGCTTTATATTAGCTTAA 57.115 29.630 0.00 0.00 39.38 1.85
721 1116 9.884636 TGAGTGACTGCTTTATATTAGCTTAAA 57.115 29.630 0.00 0.00 39.38 1.52
737 1132 9.700831 ATTAGCTTAAAGAATTGGGTCAGTATT 57.299 29.630 0.00 0.00 0.00 1.89
738 1133 7.631717 AGCTTAAAGAATTGGGTCAGTATTC 57.368 36.000 0.00 0.00 0.00 1.75
739 1134 7.406104 AGCTTAAAGAATTGGGTCAGTATTCT 58.594 34.615 0.00 0.00 39.60 2.40
740 1135 8.548877 AGCTTAAAGAATTGGGTCAGTATTCTA 58.451 33.333 0.00 0.00 37.58 2.10
741 1136 9.343539 GCTTAAAGAATTGGGTCAGTATTCTAT 57.656 33.333 0.00 0.00 37.58 1.98
743 1138 7.573968 AAAGAATTGGGTCAGTATTCTATGC 57.426 36.000 0.00 0.00 37.58 3.14
744 1139 6.506538 AGAATTGGGTCAGTATTCTATGCT 57.493 37.500 0.00 0.00 36.98 3.79
745 1140 6.529220 AGAATTGGGTCAGTATTCTATGCTC 58.471 40.000 0.00 0.00 36.98 4.26
746 1141 5.894298 ATTGGGTCAGTATTCTATGCTCA 57.106 39.130 0.00 0.00 0.00 4.26
747 1142 5.894298 TTGGGTCAGTATTCTATGCTCAT 57.106 39.130 0.00 0.00 0.00 2.90
748 1143 5.894298 TGGGTCAGTATTCTATGCTCATT 57.106 39.130 0.00 0.00 0.00 2.57
749 1144 5.614308 TGGGTCAGTATTCTATGCTCATTG 58.386 41.667 0.00 0.00 0.00 2.82
750 1145 5.130975 TGGGTCAGTATTCTATGCTCATTGT 59.869 40.000 0.00 0.00 0.00 2.71
751 1146 5.698545 GGGTCAGTATTCTATGCTCATTGTC 59.301 44.000 0.00 0.00 0.00 3.18
752 1147 5.698545 GGTCAGTATTCTATGCTCATTGTCC 59.301 44.000 0.00 0.00 0.00 4.02
753 1148 6.283694 GTCAGTATTCTATGCTCATTGTCCA 58.716 40.000 0.00 0.00 0.00 4.02
754 1149 6.763135 GTCAGTATTCTATGCTCATTGTCCAA 59.237 38.462 0.00 0.00 0.00 3.53
755 1150 6.988580 TCAGTATTCTATGCTCATTGTCCAAG 59.011 38.462 0.00 0.00 0.00 3.61
756 1151 6.988580 CAGTATTCTATGCTCATTGTCCAAGA 59.011 38.462 0.00 0.00 0.00 3.02
757 1152 7.171167 CAGTATTCTATGCTCATTGTCCAAGAG 59.829 40.741 0.00 0.00 0.00 2.85
758 1153 4.412796 TCTATGCTCATTGTCCAAGAGG 57.587 45.455 0.00 0.00 0.00 3.69
759 1154 2.431954 ATGCTCATTGTCCAAGAGGG 57.568 50.000 0.00 0.00 34.83 4.30
760 1155 0.329261 TGCTCATTGTCCAAGAGGGG 59.671 55.000 0.00 0.00 37.22 4.79
761 1156 1.034292 GCTCATTGTCCAAGAGGGGC 61.034 60.000 0.00 0.00 43.63 5.80
766 1161 4.097218 GTCCAAGAGGGGCAAACC 57.903 61.111 0.00 0.00 42.53 3.27
767 1162 1.152830 GTCCAAGAGGGGCAAACCA 59.847 57.895 0.00 0.00 42.53 3.67
768 1163 0.469144 GTCCAAGAGGGGCAAACCAA 60.469 55.000 0.00 0.00 42.53 3.67
769 1164 0.178964 TCCAAGAGGGGCAAACCAAG 60.179 55.000 0.00 0.00 42.91 3.61
770 1165 0.469892 CCAAGAGGGGCAAACCAAGT 60.470 55.000 0.00 0.00 42.91 3.16
771 1166 0.675633 CAAGAGGGGCAAACCAAGTG 59.324 55.000 0.00 0.00 42.91 3.16
772 1167 0.469892 AAGAGGGGCAAACCAAGTGG 60.470 55.000 0.00 0.00 42.91 4.00
773 1168 2.524148 AGGGGCAAACCAAGTGGC 60.524 61.111 0.00 0.00 42.91 5.01
774 1169 2.841988 GGGGCAAACCAAGTGGCA 60.842 61.111 0.00 0.00 43.06 4.92
775 1170 2.421314 GGGCAAACCAAGTGGCAC 59.579 61.111 10.29 10.29 43.06 5.01
776 1171 2.430610 GGGCAAACCAAGTGGCACA 61.431 57.895 21.41 0.00 43.06 4.57
790 1185 3.981071 TGGCACACAAGTTAGCTAGAT 57.019 42.857 0.00 0.00 0.00 1.98
791 1186 3.599343 TGGCACACAAGTTAGCTAGATG 58.401 45.455 0.00 0.00 0.00 2.90
792 1187 3.007940 TGGCACACAAGTTAGCTAGATGT 59.992 43.478 0.00 0.00 0.00 3.06
793 1188 4.003648 GGCACACAAGTTAGCTAGATGTT 58.996 43.478 0.00 0.00 0.00 2.71
794 1189 4.142816 GGCACACAAGTTAGCTAGATGTTG 60.143 45.833 0.00 5.53 0.00 3.33
795 1190 4.452455 GCACACAAGTTAGCTAGATGTTGT 59.548 41.667 0.00 6.03 0.00 3.32
796 1191 5.049405 GCACACAAGTTAGCTAGATGTTGTT 60.049 40.000 0.00 1.71 0.00 2.83
797 1192 6.147164 GCACACAAGTTAGCTAGATGTTGTTA 59.853 38.462 0.00 0.00 0.00 2.41
798 1193 7.510630 CACACAAGTTAGCTAGATGTTGTTAC 58.489 38.462 0.00 0.00 0.00 2.50
799 1194 6.365247 ACACAAGTTAGCTAGATGTTGTTACG 59.635 38.462 0.00 0.00 0.00 3.18
800 1195 6.584942 CACAAGTTAGCTAGATGTTGTTACGA 59.415 38.462 0.00 0.00 0.00 3.43
801 1196 7.275779 CACAAGTTAGCTAGATGTTGTTACGAT 59.724 37.037 0.00 0.00 0.00 3.73
802 1197 7.817962 ACAAGTTAGCTAGATGTTGTTACGATT 59.182 33.333 0.00 0.00 0.00 3.34
803 1198 7.988904 AGTTAGCTAGATGTTGTTACGATTC 57.011 36.000 0.00 0.00 0.00 2.52
804 1199 7.773149 AGTTAGCTAGATGTTGTTACGATTCT 58.227 34.615 0.00 0.00 0.00 2.40
805 1200 8.900781 AGTTAGCTAGATGTTGTTACGATTCTA 58.099 33.333 0.00 0.00 0.00 2.10
806 1201 9.512435 GTTAGCTAGATGTTGTTACGATTCTAA 57.488 33.333 0.00 0.00 0.00 2.10
809 1204 9.250624 AGCTAGATGTTGTTACGATTCTAATTC 57.749 33.333 0.00 0.00 0.00 2.17
810 1205 9.250624 GCTAGATGTTGTTACGATTCTAATTCT 57.749 33.333 0.00 0.00 0.00 2.40
823 1218 9.712305 ACGATTCTAATTCTATAATCTTGTGGG 57.288 33.333 0.00 0.00 0.00 4.61
824 1219 9.929180 CGATTCTAATTCTATAATCTTGTGGGA 57.071 33.333 0.00 0.00 0.00 4.37
833 1228 9.793259 TTCTATAATCTTGTGGGATAATGTTCC 57.207 33.333 0.00 0.00 34.83 3.62
834 1229 9.170890 TCTATAATCTTGTGGGATAATGTTCCT 57.829 33.333 0.00 0.00 35.97 3.36
835 1230 9.442047 CTATAATCTTGTGGGATAATGTTCCTC 57.558 37.037 0.00 0.00 35.97 3.71
836 1231 4.503714 TCTTGTGGGATAATGTTCCTCC 57.496 45.455 0.00 0.00 35.97 4.30
837 1232 3.849574 TCTTGTGGGATAATGTTCCTCCA 59.150 43.478 0.00 0.00 35.97 3.86
838 1233 3.644966 TGTGGGATAATGTTCCTCCAC 57.355 47.619 0.00 0.00 43.39 4.02
839 1234 3.644966 GTGGGATAATGTTCCTCCACA 57.355 47.619 0.00 0.00 42.82 4.17
840 1235 3.054434 TGTGGGATAATGTTCCTCCACAG 60.054 47.826 8.68 0.00 46.38 3.66
841 1236 3.054361 GTGGGATAATGTTCCTCCACAGT 60.054 47.826 0.00 0.00 42.82 3.55
842 1237 3.591527 TGGGATAATGTTCCTCCACAGTT 59.408 43.478 0.00 0.00 35.97 3.16
843 1238 4.044065 TGGGATAATGTTCCTCCACAGTTT 59.956 41.667 0.00 0.00 35.97 2.66
844 1239 5.251932 TGGGATAATGTTCCTCCACAGTTTA 59.748 40.000 0.00 0.00 35.97 2.01
845 1240 6.069088 TGGGATAATGTTCCTCCACAGTTTAT 60.069 38.462 0.00 0.00 35.97 1.40
846 1241 6.833933 GGGATAATGTTCCTCCACAGTTTATT 59.166 38.462 0.00 0.00 35.97 1.40
847 1242 7.996644 GGGATAATGTTCCTCCACAGTTTATTA 59.003 37.037 0.00 0.00 35.97 0.98
848 1243 8.837389 GGATAATGTTCCTCCACAGTTTATTAC 58.163 37.037 0.00 0.00 32.68 1.89
849 1244 9.391006 GATAATGTTCCTCCACAGTTTATTACA 57.609 33.333 0.00 0.00 0.00 2.41
850 1245 7.687941 AATGTTCCTCCACAGTTTATTACAG 57.312 36.000 0.00 0.00 0.00 2.74
851 1246 5.001232 TGTTCCTCCACAGTTTATTACAGC 58.999 41.667 0.00 0.00 0.00 4.40
852 1247 5.221843 TGTTCCTCCACAGTTTATTACAGCT 60.222 40.000 0.00 0.00 0.00 4.24
853 1248 4.832248 TCCTCCACAGTTTATTACAGCTG 58.168 43.478 13.48 13.48 35.31 4.24
854 1249 4.530553 TCCTCCACAGTTTATTACAGCTGA 59.469 41.667 23.35 0.00 33.57 4.26
855 1250 5.012664 TCCTCCACAGTTTATTACAGCTGAA 59.987 40.000 23.35 10.86 33.57 3.02
856 1251 5.122396 CCTCCACAGTTTATTACAGCTGAAC 59.878 44.000 23.35 13.85 33.57 3.18
857 1252 5.865085 TCCACAGTTTATTACAGCTGAACT 58.135 37.500 23.35 16.04 33.57 3.01
858 1253 6.296026 TCCACAGTTTATTACAGCTGAACTT 58.704 36.000 23.35 0.00 33.57 2.66
859 1254 7.446769 TCCACAGTTTATTACAGCTGAACTTA 58.553 34.615 23.35 0.00 33.57 2.24
860 1255 8.100791 TCCACAGTTTATTACAGCTGAACTTAT 58.899 33.333 23.35 6.81 33.57 1.73
861 1256 8.730680 CCACAGTTTATTACAGCTGAACTTATT 58.269 33.333 23.35 0.00 33.57 1.40
873 1268 7.859598 CAGCTGAACTTATTTCTGATGTATCC 58.140 38.462 8.42 0.00 41.91 2.59
874 1269 6.995091 AGCTGAACTTATTTCTGATGTATCCC 59.005 38.462 0.00 0.00 35.65 3.85
875 1270 6.995091 GCTGAACTTATTTCTGATGTATCCCT 59.005 38.462 0.00 0.00 35.65 4.20
876 1271 7.500559 GCTGAACTTATTTCTGATGTATCCCTT 59.499 37.037 0.00 0.00 35.65 3.95
885 1280 9.927081 ATTTCTGATGTATCCCTTATTTGAGTT 57.073 29.630 0.00 0.00 0.00 3.01
886 1281 8.737168 TTCTGATGTATCCCTTATTTGAGTTG 57.263 34.615 0.00 0.00 0.00 3.16
887 1282 8.089625 TCTGATGTATCCCTTATTTGAGTTGA 57.910 34.615 0.00 0.00 0.00 3.18
888 1283 8.548025 TCTGATGTATCCCTTATTTGAGTTGAA 58.452 33.333 0.00 0.00 0.00 2.69
889 1284 9.347240 CTGATGTATCCCTTATTTGAGTTGAAT 57.653 33.333 0.00 0.00 0.00 2.57
904 1299 8.840833 TTGAGTTGAATATAAAGTGTGCTACA 57.159 30.769 0.00 0.00 0.00 2.74
905 1300 8.840833 TGAGTTGAATATAAAGTGTGCTACAA 57.159 30.769 0.00 0.00 0.00 2.41
906 1301 8.935844 TGAGTTGAATATAAAGTGTGCTACAAG 58.064 33.333 0.00 0.00 0.00 3.16
907 1302 8.848474 AGTTGAATATAAAGTGTGCTACAAGT 57.152 30.769 0.00 0.00 0.00 3.16
908 1303 9.284968 AGTTGAATATAAAGTGTGCTACAAGTT 57.715 29.630 0.00 0.00 0.00 2.66
932 1327 2.681152 AAAAACTCCGATCACAACGC 57.319 45.000 0.00 0.00 0.00 4.84
933 1328 0.872388 AAAACTCCGATCACAACGCC 59.128 50.000 0.00 0.00 0.00 5.68
934 1329 0.250124 AAACTCCGATCACAACGCCA 60.250 50.000 0.00 0.00 0.00 5.69
948 1343 4.849310 GCCATAACCGCCGGCTCA 62.849 66.667 26.68 6.74 42.78 4.26
949 1344 2.111043 CCATAACCGCCGGCTCAT 59.889 61.111 26.68 12.46 0.00 2.90
950 1345 2.253758 CCATAACCGCCGGCTCATG 61.254 63.158 26.68 19.80 0.00 3.07
951 1346 1.227527 CATAACCGCCGGCTCATGA 60.228 57.895 26.68 6.09 0.00 3.07
952 1347 0.813610 CATAACCGCCGGCTCATGAA 60.814 55.000 26.68 5.12 0.00 2.57
965 1360 3.494048 GGCTCATGAAAGAGTGGATCGAT 60.494 47.826 0.00 0.00 37.94 3.59
966 1361 3.740321 GCTCATGAAAGAGTGGATCGATC 59.260 47.826 17.36 17.36 37.94 3.69
967 1362 3.969899 TCATGAAAGAGTGGATCGATCG 58.030 45.455 18.81 9.36 0.00 3.69
968 1363 3.632145 TCATGAAAGAGTGGATCGATCGA 59.368 43.478 21.86 21.86 0.00 3.59
969 1364 4.097892 TCATGAAAGAGTGGATCGATCGAA 59.902 41.667 23.50 2.26 0.00 3.71
971 1366 2.873133 AAGAGTGGATCGATCGAACC 57.127 50.000 31.18 31.18 37.55 3.62
972 1367 1.033574 AGAGTGGATCGATCGAACCC 58.966 55.000 33.42 28.77 36.40 4.11
973 1368 1.033574 GAGTGGATCGATCGAACCCT 58.966 55.000 33.42 28.79 36.40 4.34
974 1369 2.158652 AGAGTGGATCGATCGAACCCTA 60.159 50.000 33.42 18.60 36.40 3.53
975 1370 1.955080 AGTGGATCGATCGAACCCTAC 59.045 52.381 33.42 26.70 36.40 3.18
976 1371 1.955080 GTGGATCGATCGAACCCTACT 59.045 52.381 33.42 12.91 36.40 2.57
977 1372 2.361438 GTGGATCGATCGAACCCTACTT 59.639 50.000 33.42 12.18 36.40 2.24
978 1373 2.621998 TGGATCGATCGAACCCTACTTC 59.378 50.000 33.42 19.17 36.40 3.01
980 1375 4.070716 GGATCGATCGAACCCTACTTCTA 58.929 47.826 28.70 0.00 31.81 2.10
981 1376 4.083377 GGATCGATCGAACCCTACTTCTAC 60.083 50.000 28.70 3.92 31.81 2.59
982 1377 3.209410 TCGATCGAACCCTACTTCTACC 58.791 50.000 16.99 0.00 0.00 3.18
983 1378 2.947652 CGATCGAACCCTACTTCTACCA 59.052 50.000 10.26 0.00 0.00 3.25
984 1379 3.243002 CGATCGAACCCTACTTCTACCAC 60.243 52.174 10.26 0.00 0.00 4.16
985 1380 3.159213 TCGAACCCTACTTCTACCACA 57.841 47.619 0.00 0.00 0.00 4.17
990 1385 1.625616 CCTACTTCTACCACAACGCG 58.374 55.000 3.53 3.53 0.00 6.01
1096 1491 2.879233 GCCGTGGGAGGTTCTGTGA 61.879 63.158 0.00 0.00 0.00 3.58
1143 1538 3.276091 CCCAATGGCGCGCGAATA 61.276 61.111 37.18 19.06 0.00 1.75
1401 1796 1.893808 CGGCGCCCTCATGCTAAAT 60.894 57.895 23.46 0.00 0.00 1.40
1419 1814 1.710013 ATCGTGTCTTCGACGCAAAT 58.290 45.000 8.11 0.00 42.42 2.32
1460 2837 2.593978 CCCTGCTCATGACCCCAG 59.406 66.667 0.00 0.00 0.00 4.45
1579 2974 1.911471 GGCAAGGAGGAGGAGAAGG 59.089 63.158 0.00 0.00 0.00 3.46
1580 2975 1.223211 GCAAGGAGGAGGAGAAGGC 59.777 63.158 0.00 0.00 0.00 4.35
1581 2976 1.911471 CAAGGAGGAGGAGAAGGCC 59.089 63.158 0.00 0.00 0.00 5.19
1582 2980 0.911525 CAAGGAGGAGGAGAAGGCCA 60.912 60.000 5.01 0.00 0.00 5.36
1583 2981 0.620121 AAGGAGGAGGAGAAGGCCAG 60.620 60.000 5.01 0.00 0.00 4.85
1617 3015 2.100252 CGGCAAGTCGGAGGTATTAGAA 59.900 50.000 0.00 0.00 0.00 2.10
1629 3027 5.179452 AGGTATTAGAAAGCTTTGAGGCA 57.821 39.130 18.30 0.00 34.17 4.75
1635 3033 0.106015 AAAGCTTTGAGGCACCCAGT 60.106 50.000 11.80 0.00 34.17 4.00
1659 3057 1.509703 CGGTGCCATCATCATCTGAG 58.490 55.000 0.00 0.00 37.28 3.35
1697 3095 4.394797 AAAAGAAAGAGAGGGGCAGATT 57.605 40.909 0.00 0.00 0.00 2.40
2393 3802 4.072131 CCCGATCTTTTTCCTGAGAACAA 58.928 43.478 0.00 0.00 0.00 2.83
2491 3900 2.485795 GCAACCACAACAAGCCGGA 61.486 57.895 5.05 0.00 0.00 5.14
2538 3947 2.518349 CAACCACCACAAGCCGGT 60.518 61.111 1.90 0.00 37.16 5.28
2539 3948 2.124693 CAACCACCACAAGCCGGTT 61.125 57.895 1.90 0.00 42.45 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.178921 TGCAAGGTGTCCTCTCTCCT 60.179 55.000 0.00 0.00 30.89 3.69
49 50 3.717707 CGAATAATCGGCTCTTCTTGGA 58.282 45.455 0.00 0.00 45.32 3.53
64 65 5.047188 TCATCTTTAGTGCATCGCGAATAA 58.953 37.500 15.24 4.98 0.00 1.40
69 70 2.860136 TCTTCATCTTTAGTGCATCGCG 59.140 45.455 0.00 0.00 0.00 5.87
79 80 3.119280 TGATGCCGTCGTCTTCATCTTTA 60.119 43.478 12.14 0.00 37.00 1.85
84 85 1.645034 CTTGATGCCGTCGTCTTCAT 58.355 50.000 0.00 0.00 0.00 2.57
98 99 2.123428 GCCTTGCCATCGCCTTGAT 61.123 57.895 0.00 0.00 38.01 2.57
123 146 3.345508 TTGTACTCTAGTCCGCTCTCA 57.654 47.619 0.00 0.00 0.00 3.27
125 148 2.419324 CGTTTGTACTCTAGTCCGCTCT 59.581 50.000 0.00 0.00 0.00 4.09
132 155 3.097614 AGGGCATCGTTTGTACTCTAGT 58.902 45.455 0.00 0.00 0.00 2.57
141 164 0.523072 CTTCACCAGGGCATCGTTTG 59.477 55.000 0.00 0.00 0.00 2.93
142 165 0.609131 CCTTCACCAGGGCATCGTTT 60.609 55.000 0.00 0.00 39.39 3.60
186 209 1.076632 TCCCAAACACCACCACCAC 60.077 57.895 0.00 0.00 0.00 4.16
187 210 1.228793 CTCCCAAACACCACCACCA 59.771 57.895 0.00 0.00 0.00 4.17
188 211 1.530655 CCTCCCAAACACCACCACC 60.531 63.158 0.00 0.00 0.00 4.61
189 212 1.530655 CCCTCCCAAACACCACCAC 60.531 63.158 0.00 0.00 0.00 4.16
190 213 2.773527 CCCCTCCCAAACACCACCA 61.774 63.158 0.00 0.00 0.00 4.17
191 214 2.117423 CCCCTCCCAAACACCACC 59.883 66.667 0.00 0.00 0.00 4.61
192 215 2.117423 CCCCCTCCCAAACACCAC 59.883 66.667 0.00 0.00 0.00 4.16
207 230 2.150051 CAGGCATCCCTCTACCCCC 61.150 68.421 0.00 0.00 40.33 5.40
208 231 2.150051 CCAGGCATCCCTCTACCCC 61.150 68.421 0.00 0.00 40.33 4.95
209 232 2.150051 CCCAGGCATCCCTCTACCC 61.150 68.421 0.00 0.00 40.33 3.69
210 233 2.150051 CCCCAGGCATCCCTCTACC 61.150 68.421 0.00 0.00 40.33 3.18
211 234 1.384643 ACCCCAGGCATCCCTCTAC 60.385 63.158 0.00 0.00 40.33 2.59
212 235 1.384502 CACCCCAGGCATCCCTCTA 60.385 63.158 0.00 0.00 40.33 2.43
213 236 2.574195 ATCACCCCAGGCATCCCTCT 62.574 60.000 0.00 0.00 40.33 3.69
214 237 2.081161 ATCACCCCAGGCATCCCTC 61.081 63.158 0.00 0.00 40.33 4.30
215 238 2.045132 ATCACCCCAGGCATCCCT 59.955 61.111 0.00 0.00 44.25 4.20
216 239 1.723128 ATCATCACCCCAGGCATCCC 61.723 60.000 0.00 0.00 0.00 3.85
217 240 0.538977 CATCATCACCCCAGGCATCC 60.539 60.000 0.00 0.00 0.00 3.51
218 241 0.538977 CCATCATCACCCCAGGCATC 60.539 60.000 0.00 0.00 0.00 3.91
219 242 1.291459 ACCATCATCACCCCAGGCAT 61.291 55.000 0.00 0.00 0.00 4.40
220 243 1.930133 ACCATCATCACCCCAGGCA 60.930 57.895 0.00 0.00 0.00 4.75
221 244 1.454479 CACCATCATCACCCCAGGC 60.454 63.158 0.00 0.00 0.00 4.85
222 245 1.228228 CCACCATCATCACCCCAGG 59.772 63.158 0.00 0.00 0.00 4.45
223 246 1.228228 CCCACCATCATCACCCCAG 59.772 63.158 0.00 0.00 0.00 4.45
224 247 2.995077 GCCCACCATCATCACCCCA 61.995 63.158 0.00 0.00 0.00 4.96
225 248 2.123726 GCCCACCATCATCACCCC 60.124 66.667 0.00 0.00 0.00 4.95
226 249 2.516930 CGCCCACCATCATCACCC 60.517 66.667 0.00 0.00 0.00 4.61
227 250 1.524621 CTCGCCCACCATCATCACC 60.525 63.158 0.00 0.00 0.00 4.02
228 251 0.464036 TACTCGCCCACCATCATCAC 59.536 55.000 0.00 0.00 0.00 3.06
229 252 0.464036 GTACTCGCCCACCATCATCA 59.536 55.000 0.00 0.00 0.00 3.07
230 253 0.464036 TGTACTCGCCCACCATCATC 59.536 55.000 0.00 0.00 0.00 2.92
231 254 0.908910 TTGTACTCGCCCACCATCAT 59.091 50.000 0.00 0.00 0.00 2.45
232 255 0.249120 CTTGTACTCGCCCACCATCA 59.751 55.000 0.00 0.00 0.00 3.07
233 256 0.462047 CCTTGTACTCGCCCACCATC 60.462 60.000 0.00 0.00 0.00 3.51
234 257 1.602237 CCTTGTACTCGCCCACCAT 59.398 57.895 0.00 0.00 0.00 3.55
235 258 2.589157 CCCTTGTACTCGCCCACCA 61.589 63.158 0.00 0.00 0.00 4.17
236 259 2.267961 CCCTTGTACTCGCCCACC 59.732 66.667 0.00 0.00 0.00 4.61
237 260 2.240162 CTCCCCTTGTACTCGCCCAC 62.240 65.000 0.00 0.00 0.00 4.61
238 261 1.987855 CTCCCCTTGTACTCGCCCA 60.988 63.158 0.00 0.00 0.00 5.36
239 262 2.732619 CCTCCCCTTGTACTCGCCC 61.733 68.421 0.00 0.00 0.00 6.13
240 263 2.901042 CCTCCCCTTGTACTCGCC 59.099 66.667 0.00 0.00 0.00 5.54
247 533 4.617595 ACCCTGGCCTCCCCTTGT 62.618 66.667 3.32 0.00 0.00 3.16
249 535 3.268032 CAACCCTGGCCTCCCCTT 61.268 66.667 3.32 0.00 0.00 3.95
365 716 9.571810 CAATTTCGATCAATTCTATTTGAACCA 57.428 29.630 0.00 0.00 38.98 3.67
399 750 0.240945 CAGCTTAGGCGTTTGTTGGG 59.759 55.000 0.00 0.00 44.37 4.12
400 751 0.387239 GCAGCTTAGGCGTTTGTTGG 60.387 55.000 0.00 0.00 44.37 3.77
401 752 0.387239 GGCAGCTTAGGCGTTTGTTG 60.387 55.000 0.00 0.00 44.37 3.33
402 753 0.821711 TGGCAGCTTAGGCGTTTGTT 60.822 50.000 0.00 0.00 44.37 2.83
403 754 1.228124 TGGCAGCTTAGGCGTTTGT 60.228 52.632 0.00 0.00 44.37 2.83
405 756 0.609131 ATGTGGCAGCTTAGGCGTTT 60.609 50.000 0.00 0.00 44.37 3.60
415 810 2.429610 AGGATCAAAATCATGTGGCAGC 59.570 45.455 0.00 0.00 33.21 5.25
428 823 6.254804 CGTTCGACATACAACATAGGATCAAA 59.745 38.462 0.00 0.00 0.00 2.69
438 833 6.088483 GTGAATAAGTCGTTCGACATACAACA 59.912 38.462 23.70 14.63 37.59 3.33
443 838 5.946298 AGTGTGAATAAGTCGTTCGACATA 58.054 37.500 23.70 17.62 37.59 2.29
458 853 8.992073 GGCATTTCTTTAATTTTGAGTGTGAAT 58.008 29.630 0.00 0.00 0.00 2.57
518 913 5.065346 TCGTTTGCAGTTTCAGTGTATTTGA 59.935 36.000 0.00 0.00 0.00 2.69
591 986 0.843984 ATACATCAGGAAACCGGGGG 59.156 55.000 6.32 0.00 0.00 5.40
592 987 2.297701 CAATACATCAGGAAACCGGGG 58.702 52.381 6.32 0.00 0.00 5.73
635 1030 5.239306 CCCTTGCATGCTAAGATAATTTCGA 59.761 40.000 20.33 0.00 0.00 3.71
636 1031 5.455392 CCCTTGCATGCTAAGATAATTTCG 58.545 41.667 20.33 5.63 0.00 3.46
637 1032 5.279156 CCCCCTTGCATGCTAAGATAATTTC 60.279 44.000 20.33 0.00 0.00 2.17
638 1033 4.590222 CCCCCTTGCATGCTAAGATAATTT 59.410 41.667 20.33 0.00 0.00 1.82
639 1034 4.140947 TCCCCCTTGCATGCTAAGATAATT 60.141 41.667 20.33 0.00 0.00 1.40
640 1035 3.398967 TCCCCCTTGCATGCTAAGATAAT 59.601 43.478 20.33 0.00 0.00 1.28
641 1036 2.782925 TCCCCCTTGCATGCTAAGATAA 59.217 45.455 20.33 2.23 0.00 1.75
642 1037 2.417652 TCCCCCTTGCATGCTAAGATA 58.582 47.619 20.33 0.00 0.00 1.98
643 1038 1.225373 TCCCCCTTGCATGCTAAGAT 58.775 50.000 20.33 0.00 0.00 2.40
644 1039 0.998928 TTCCCCCTTGCATGCTAAGA 59.001 50.000 20.33 4.39 0.00 2.10
645 1040 1.341383 ACTTCCCCCTTGCATGCTAAG 60.341 52.381 20.33 18.72 0.00 2.18
646 1041 0.704076 ACTTCCCCCTTGCATGCTAA 59.296 50.000 20.33 10.52 0.00 3.09
647 1042 0.034186 CACTTCCCCCTTGCATGCTA 60.034 55.000 20.33 10.88 0.00 3.49
648 1043 1.304713 CACTTCCCCCTTGCATGCT 60.305 57.895 20.33 0.00 0.00 3.79
649 1044 2.353610 CCACTTCCCCCTTGCATGC 61.354 63.158 11.82 11.82 0.00 4.06
650 1045 0.967380 GTCCACTTCCCCCTTGCATG 60.967 60.000 0.00 0.00 0.00 4.06
651 1046 1.384191 GTCCACTTCCCCCTTGCAT 59.616 57.895 0.00 0.00 0.00 3.96
652 1047 1.434513 ATGTCCACTTCCCCCTTGCA 61.435 55.000 0.00 0.00 0.00 4.08
653 1048 0.251787 AATGTCCACTTCCCCCTTGC 60.252 55.000 0.00 0.00 0.00 4.01
654 1049 1.355720 AGAATGTCCACTTCCCCCTTG 59.644 52.381 0.00 0.00 0.00 3.61
655 1050 1.760405 AGAATGTCCACTTCCCCCTT 58.240 50.000 0.00 0.00 0.00 3.95
656 1051 2.482494 CTAGAATGTCCACTTCCCCCT 58.518 52.381 0.00 0.00 0.00 4.79
657 1052 1.490910 CCTAGAATGTCCACTTCCCCC 59.509 57.143 0.00 0.00 0.00 5.40
658 1053 1.134068 GCCTAGAATGTCCACTTCCCC 60.134 57.143 0.00 0.00 0.00 4.81
659 1054 1.134068 GGCCTAGAATGTCCACTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
660 1055 1.134068 GGGCCTAGAATGTCCACTTCC 60.134 57.143 0.84 0.00 0.00 3.46
661 1056 1.840635 AGGGCCTAGAATGTCCACTTC 59.159 52.381 2.82 0.00 0.00 3.01
662 1057 1.972588 AGGGCCTAGAATGTCCACTT 58.027 50.000 2.82 0.00 0.00 3.16
663 1058 1.972588 AAGGGCCTAGAATGTCCACT 58.027 50.000 6.41 0.00 0.00 4.00
664 1059 4.390264 GAATAAGGGCCTAGAATGTCCAC 58.610 47.826 6.41 0.00 0.00 4.02
665 1060 3.071023 CGAATAAGGGCCTAGAATGTCCA 59.929 47.826 6.41 0.00 0.00 4.02
666 1061 3.557264 CCGAATAAGGGCCTAGAATGTCC 60.557 52.174 6.41 0.00 0.00 4.02
667 1062 3.665190 CCGAATAAGGGCCTAGAATGTC 58.335 50.000 6.41 0.00 0.00 3.06
668 1063 2.224548 GCCGAATAAGGGCCTAGAATGT 60.225 50.000 6.41 0.00 44.97 2.71
669 1064 2.427506 GCCGAATAAGGGCCTAGAATG 58.572 52.381 6.41 0.00 44.97 2.67
670 1065 2.861147 GCCGAATAAGGGCCTAGAAT 57.139 50.000 6.41 0.00 44.97 2.40
678 1073 2.943033 ACTCAAAATCGCCGAATAAGGG 59.057 45.455 0.00 0.00 0.00 3.95
679 1074 3.621268 TCACTCAAAATCGCCGAATAAGG 59.379 43.478 0.00 0.00 0.00 2.69
680 1075 4.330074 AGTCACTCAAAATCGCCGAATAAG 59.670 41.667 0.00 0.00 0.00 1.73
681 1076 4.092821 CAGTCACTCAAAATCGCCGAATAA 59.907 41.667 0.00 0.00 0.00 1.40
682 1077 3.616821 CAGTCACTCAAAATCGCCGAATA 59.383 43.478 0.00 0.00 0.00 1.75
683 1078 2.416547 CAGTCACTCAAAATCGCCGAAT 59.583 45.455 0.00 0.00 0.00 3.34
684 1079 1.798223 CAGTCACTCAAAATCGCCGAA 59.202 47.619 0.00 0.00 0.00 4.30
685 1080 1.428448 CAGTCACTCAAAATCGCCGA 58.572 50.000 0.00 0.00 0.00 5.54
686 1081 0.179215 GCAGTCACTCAAAATCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
687 1082 1.160137 AGCAGTCACTCAAAATCGCC 58.840 50.000 0.00 0.00 0.00 5.54
688 1083 2.977405 AAGCAGTCACTCAAAATCGC 57.023 45.000 0.00 0.00 0.00 4.58
689 1084 9.855361 CTAATATAAAGCAGTCACTCAAAATCG 57.145 33.333 0.00 0.00 0.00 3.34
690 1085 9.657121 GCTAATATAAAGCAGTCACTCAAAATC 57.343 33.333 5.35 0.00 39.83 2.17
691 1086 9.401058 AGCTAATATAAAGCAGTCACTCAAAAT 57.599 29.630 11.42 0.00 42.62 1.82
692 1087 8.792830 AGCTAATATAAAGCAGTCACTCAAAA 57.207 30.769 11.42 0.00 42.62 2.44
693 1088 8.792830 AAGCTAATATAAAGCAGTCACTCAAA 57.207 30.769 11.42 0.00 42.62 2.69
694 1089 9.884636 TTAAGCTAATATAAAGCAGTCACTCAA 57.115 29.630 11.42 0.00 42.62 3.02
695 1090 9.884636 TTTAAGCTAATATAAAGCAGTCACTCA 57.115 29.630 11.42 0.00 42.62 3.41
711 1106 9.700831 AATACTGACCCAATTCTTTAAGCTAAT 57.299 29.630 0.00 0.00 0.00 1.73
712 1107 9.174166 GAATACTGACCCAATTCTTTAAGCTAA 57.826 33.333 0.00 0.00 0.00 3.09
713 1108 8.548877 AGAATACTGACCCAATTCTTTAAGCTA 58.451 33.333 0.00 0.00 36.76 3.32
714 1109 7.406104 AGAATACTGACCCAATTCTTTAAGCT 58.594 34.615 0.00 0.00 36.76 3.74
715 1110 7.631717 AGAATACTGACCCAATTCTTTAAGC 57.368 36.000 0.00 0.00 36.76 3.09
717 1112 9.120538 GCATAGAATACTGACCCAATTCTTTAA 57.879 33.333 2.47 0.00 39.85 1.52
718 1113 8.494433 AGCATAGAATACTGACCCAATTCTTTA 58.506 33.333 2.47 0.00 39.85 1.85
719 1114 7.349598 AGCATAGAATACTGACCCAATTCTTT 58.650 34.615 2.47 0.00 39.85 2.52
720 1115 6.904626 AGCATAGAATACTGACCCAATTCTT 58.095 36.000 2.47 0.00 39.85 2.52
721 1116 6.100279 TGAGCATAGAATACTGACCCAATTCT 59.900 38.462 0.00 0.00 41.57 2.40
722 1117 6.291377 TGAGCATAGAATACTGACCCAATTC 58.709 40.000 0.00 0.00 0.00 2.17
723 1118 6.252599 TGAGCATAGAATACTGACCCAATT 57.747 37.500 0.00 0.00 0.00 2.32
724 1119 5.894298 TGAGCATAGAATACTGACCCAAT 57.106 39.130 0.00 0.00 0.00 3.16
725 1120 5.894298 ATGAGCATAGAATACTGACCCAA 57.106 39.130 0.00 0.00 0.00 4.12
726 1121 5.130975 ACAATGAGCATAGAATACTGACCCA 59.869 40.000 0.00 0.00 0.00 4.51
727 1122 5.615289 ACAATGAGCATAGAATACTGACCC 58.385 41.667 0.00 0.00 0.00 4.46
728 1123 5.698545 GGACAATGAGCATAGAATACTGACC 59.301 44.000 0.00 0.00 0.00 4.02
729 1124 6.283694 TGGACAATGAGCATAGAATACTGAC 58.716 40.000 0.00 0.00 0.00 3.51
730 1125 6.484364 TGGACAATGAGCATAGAATACTGA 57.516 37.500 0.00 0.00 0.00 3.41
731 1126 6.988580 TCTTGGACAATGAGCATAGAATACTG 59.011 38.462 0.00 0.00 0.00 2.74
732 1127 7.129457 TCTTGGACAATGAGCATAGAATACT 57.871 36.000 0.00 0.00 0.00 2.12
733 1128 6.426328 CCTCTTGGACAATGAGCATAGAATAC 59.574 42.308 0.00 0.00 34.57 1.89
734 1129 6.464892 CCCTCTTGGACAATGAGCATAGAATA 60.465 42.308 0.00 0.00 35.39 1.75
735 1130 5.374921 CCTCTTGGACAATGAGCATAGAAT 58.625 41.667 0.00 0.00 34.57 2.40
736 1131 4.384537 CCCTCTTGGACAATGAGCATAGAA 60.385 45.833 0.00 0.00 35.39 2.10
737 1132 3.135348 CCCTCTTGGACAATGAGCATAGA 59.865 47.826 0.00 0.00 35.39 1.98
738 1133 3.474600 CCCTCTTGGACAATGAGCATAG 58.525 50.000 0.00 0.00 35.39 2.23
739 1134 2.173356 CCCCTCTTGGACAATGAGCATA 59.827 50.000 0.00 0.00 35.39 3.14
740 1135 1.064166 CCCCTCTTGGACAATGAGCAT 60.064 52.381 0.00 0.00 35.39 3.79
741 1136 0.329261 CCCCTCTTGGACAATGAGCA 59.671 55.000 0.00 0.00 35.39 4.26
742 1137 1.034292 GCCCCTCTTGGACAATGAGC 61.034 60.000 0.00 0.00 35.39 4.26
743 1138 0.329261 TGCCCCTCTTGGACAATGAG 59.671 55.000 0.00 0.00 35.39 2.90
744 1139 0.776810 TTGCCCCTCTTGGACAATGA 59.223 50.000 0.00 0.00 35.39 2.57
745 1140 1.273327 GTTTGCCCCTCTTGGACAATG 59.727 52.381 0.00 0.00 35.39 2.82
746 1141 1.632589 GTTTGCCCCTCTTGGACAAT 58.367 50.000 0.00 0.00 35.39 2.71
747 1142 0.469144 GGTTTGCCCCTCTTGGACAA 60.469 55.000 0.00 0.00 35.39 3.18
748 1143 1.152830 GGTTTGCCCCTCTTGGACA 59.847 57.895 0.00 0.00 35.39 4.02
749 1144 0.469144 TTGGTTTGCCCCTCTTGGAC 60.469 55.000 0.00 0.00 35.39 4.02
750 1145 0.178964 CTTGGTTTGCCCCTCTTGGA 60.179 55.000 0.00 0.00 35.39 3.53
751 1146 0.469892 ACTTGGTTTGCCCCTCTTGG 60.470 55.000 0.00 0.00 0.00 3.61
752 1147 0.675633 CACTTGGTTTGCCCCTCTTG 59.324 55.000 0.00 0.00 0.00 3.02
753 1148 0.469892 CCACTTGGTTTGCCCCTCTT 60.470 55.000 0.00 0.00 0.00 2.85
754 1149 1.153756 CCACTTGGTTTGCCCCTCT 59.846 57.895 0.00 0.00 0.00 3.69
755 1150 2.574018 GCCACTTGGTTTGCCCCTC 61.574 63.158 0.00 0.00 37.57 4.30
756 1151 2.524148 GCCACTTGGTTTGCCCCT 60.524 61.111 0.00 0.00 37.57 4.79
757 1152 2.841988 TGCCACTTGGTTTGCCCC 60.842 61.111 0.00 0.00 37.57 5.80
758 1153 2.421314 GTGCCACTTGGTTTGCCC 59.579 61.111 0.00 0.00 37.57 5.36
759 1154 1.227234 GTGTGCCACTTGGTTTGCC 60.227 57.895 0.00 0.00 37.57 4.52
760 1155 0.108424 TTGTGTGCCACTTGGTTTGC 60.108 50.000 0.00 0.00 37.57 3.68
761 1156 1.204467 ACTTGTGTGCCACTTGGTTTG 59.796 47.619 0.00 0.00 37.57 2.93
762 1157 1.555967 ACTTGTGTGCCACTTGGTTT 58.444 45.000 0.00 0.00 37.57 3.27
763 1158 1.555967 AACTTGTGTGCCACTTGGTT 58.444 45.000 0.00 6.26 37.57 3.67
764 1159 2.297701 CTAACTTGTGTGCCACTTGGT 58.702 47.619 0.00 1.95 37.57 3.67
765 1160 1.001378 GCTAACTTGTGTGCCACTTGG 60.001 52.381 0.00 0.00 35.11 3.61
766 1161 1.949525 AGCTAACTTGTGTGCCACTTG 59.050 47.619 0.00 3.00 35.11 3.16
767 1162 2.348411 AGCTAACTTGTGTGCCACTT 57.652 45.000 0.00 0.00 35.11 3.16
768 1163 2.632996 TCTAGCTAACTTGTGTGCCACT 59.367 45.455 0.00 0.00 35.11 4.00
769 1164 3.040147 TCTAGCTAACTTGTGTGCCAC 57.960 47.619 0.00 0.00 34.56 5.01
770 1165 3.007940 ACATCTAGCTAACTTGTGTGCCA 59.992 43.478 0.00 0.00 0.00 4.92
771 1166 3.600388 ACATCTAGCTAACTTGTGTGCC 58.400 45.455 0.00 0.00 0.00 5.01
772 1167 4.452455 ACAACATCTAGCTAACTTGTGTGC 59.548 41.667 0.00 0.00 0.00 4.57
773 1168 6.545504 AACAACATCTAGCTAACTTGTGTG 57.454 37.500 0.00 3.81 0.00 3.82
774 1169 6.365247 CGTAACAACATCTAGCTAACTTGTGT 59.635 38.462 0.00 0.00 0.00 3.72
775 1170 6.584942 TCGTAACAACATCTAGCTAACTTGTG 59.415 38.462 0.00 0.00 0.00 3.33
776 1171 6.684686 TCGTAACAACATCTAGCTAACTTGT 58.315 36.000 0.00 0.00 0.00 3.16
777 1172 7.757097 ATCGTAACAACATCTAGCTAACTTG 57.243 36.000 0.00 0.00 0.00 3.16
778 1173 8.251721 AGAATCGTAACAACATCTAGCTAACTT 58.748 33.333 0.00 0.00 0.00 2.66
779 1174 7.773149 AGAATCGTAACAACATCTAGCTAACT 58.227 34.615 0.00 0.00 0.00 2.24
780 1175 7.988904 AGAATCGTAACAACATCTAGCTAAC 57.011 36.000 0.00 0.00 0.00 2.34
783 1178 9.250624 GAATTAGAATCGTAACAACATCTAGCT 57.749 33.333 0.00 0.00 0.00 3.32
784 1179 9.250624 AGAATTAGAATCGTAACAACATCTAGC 57.749 33.333 0.00 0.00 0.00 3.42
797 1192 9.712305 CCCACAAGATTATAGAATTAGAATCGT 57.288 33.333 0.00 0.00 40.66 3.73
798 1193 9.929180 TCCCACAAGATTATAGAATTAGAATCG 57.071 33.333 0.00 0.00 40.66 3.34
807 1202 9.793259 GGAACATTATCCCACAAGATTATAGAA 57.207 33.333 0.00 0.00 33.05 2.10
808 1203 9.170890 AGGAACATTATCCCACAAGATTATAGA 57.829 33.333 0.00 0.00 40.59 1.98
809 1204 9.442047 GAGGAACATTATCCCACAAGATTATAG 57.558 37.037 0.00 0.00 40.59 1.31
810 1205 8.383175 GGAGGAACATTATCCCACAAGATTATA 58.617 37.037 0.00 0.00 40.59 0.98
811 1206 7.147141 TGGAGGAACATTATCCCACAAGATTAT 60.147 37.037 0.00 0.00 40.59 1.28
812 1207 6.159575 TGGAGGAACATTATCCCACAAGATTA 59.840 38.462 0.00 0.00 40.59 1.75
813 1208 5.044179 TGGAGGAACATTATCCCACAAGATT 60.044 40.000 0.00 0.00 40.59 2.40
814 1209 4.478317 TGGAGGAACATTATCCCACAAGAT 59.522 41.667 0.00 0.00 40.59 2.40
815 1210 3.849574 TGGAGGAACATTATCCCACAAGA 59.150 43.478 0.00 0.00 40.59 3.02
816 1211 3.947834 GTGGAGGAACATTATCCCACAAG 59.052 47.826 0.00 0.00 40.59 3.16
817 1212 3.332187 TGTGGAGGAACATTATCCCACAA 59.668 43.478 9.31 0.00 38.14 3.33
818 1213 2.916269 TGTGGAGGAACATTATCCCACA 59.084 45.455 7.84 7.84 40.59 4.17
819 1214 3.054361 ACTGTGGAGGAACATTATCCCAC 60.054 47.826 0.00 0.00 40.59 4.61
820 1215 3.189606 ACTGTGGAGGAACATTATCCCA 58.810 45.455 0.00 0.00 40.59 4.37
821 1216 3.933861 ACTGTGGAGGAACATTATCCC 57.066 47.619 0.00 0.00 40.59 3.85
822 1217 7.881775 AATAAACTGTGGAGGAACATTATCC 57.118 36.000 0.00 0.00 39.96 2.59
823 1218 9.391006 TGTAATAAACTGTGGAGGAACATTATC 57.609 33.333 0.00 0.00 0.00 1.75
824 1219 9.396022 CTGTAATAAACTGTGGAGGAACATTAT 57.604 33.333 0.00 0.00 0.00 1.28
825 1220 7.335924 GCTGTAATAAACTGTGGAGGAACATTA 59.664 37.037 0.00 0.00 0.00 1.90
826 1221 6.151144 GCTGTAATAAACTGTGGAGGAACATT 59.849 38.462 0.00 0.00 0.00 2.71
827 1222 5.648092 GCTGTAATAAACTGTGGAGGAACAT 59.352 40.000 0.00 0.00 0.00 2.71
828 1223 5.001232 GCTGTAATAAACTGTGGAGGAACA 58.999 41.667 0.00 0.00 0.00 3.18
829 1224 5.122396 CAGCTGTAATAAACTGTGGAGGAAC 59.878 44.000 5.25 0.00 0.00 3.62
830 1225 5.012664 TCAGCTGTAATAAACTGTGGAGGAA 59.987 40.000 14.67 0.00 0.00 3.36
831 1226 4.530553 TCAGCTGTAATAAACTGTGGAGGA 59.469 41.667 14.67 0.00 0.00 3.71
832 1227 4.832248 TCAGCTGTAATAAACTGTGGAGG 58.168 43.478 14.67 0.00 0.00 4.30
833 1228 5.934625 AGTTCAGCTGTAATAAACTGTGGAG 59.065 40.000 14.67 0.00 0.00 3.86
834 1229 5.865085 AGTTCAGCTGTAATAAACTGTGGA 58.135 37.500 14.67 0.00 0.00 4.02
835 1230 6.560253 AAGTTCAGCTGTAATAAACTGTGG 57.440 37.500 14.67 0.00 30.95 4.17
843 1238 9.890629 ACATCAGAAATAAGTTCAGCTGTAATA 57.109 29.630 14.67 1.64 38.86 0.98
844 1239 8.798859 ACATCAGAAATAAGTTCAGCTGTAAT 57.201 30.769 14.67 0.00 38.86 1.89
845 1240 9.890629 ATACATCAGAAATAAGTTCAGCTGTAA 57.109 29.630 14.67 4.02 37.66 2.41
846 1241 9.534565 GATACATCAGAAATAAGTTCAGCTGTA 57.465 33.333 14.67 0.00 38.16 2.74
847 1242 7.497249 GGATACATCAGAAATAAGTTCAGCTGT 59.503 37.037 14.67 0.00 38.86 4.40
848 1243 7.041508 GGGATACATCAGAAATAAGTTCAGCTG 60.042 40.741 7.63 7.63 37.14 4.24
849 1244 6.995091 GGGATACATCAGAAATAAGTTCAGCT 59.005 38.462 0.00 0.00 37.14 4.24
850 1245 6.995091 AGGGATACATCAGAAATAAGTTCAGC 59.005 38.462 0.00 0.00 37.14 4.26
851 1246 8.970859 AAGGGATACATCAGAAATAAGTTCAG 57.029 34.615 0.00 0.00 37.14 3.02
859 1254 9.927081 AACTCAAATAAGGGATACATCAGAAAT 57.073 29.630 0.00 0.00 39.74 2.17
860 1255 9.177608 CAACTCAAATAAGGGATACATCAGAAA 57.822 33.333 0.00 0.00 39.74 2.52
861 1256 8.548025 TCAACTCAAATAAGGGATACATCAGAA 58.452 33.333 0.00 0.00 39.74 3.02
862 1257 8.089625 TCAACTCAAATAAGGGATACATCAGA 57.910 34.615 0.00 0.00 39.74 3.27
863 1258 8.737168 TTCAACTCAAATAAGGGATACATCAG 57.263 34.615 0.00 0.00 39.74 2.90
878 1273 9.278978 TGTAGCACACTTTATATTCAACTCAAA 57.721 29.630 0.00 0.00 0.00 2.69
879 1274 8.840833 TGTAGCACACTTTATATTCAACTCAA 57.159 30.769 0.00 0.00 0.00 3.02
880 1275 8.840833 TTGTAGCACACTTTATATTCAACTCA 57.159 30.769 0.00 0.00 0.00 3.41
881 1276 8.936864 ACTTGTAGCACACTTTATATTCAACTC 58.063 33.333 0.00 0.00 0.00 3.01
882 1277 8.848474 ACTTGTAGCACACTTTATATTCAACT 57.152 30.769 0.00 0.00 0.00 3.16
913 1308 1.265905 GGCGTTGTGATCGGAGTTTTT 59.734 47.619 0.00 0.00 0.00 1.94
914 1309 0.872388 GGCGTTGTGATCGGAGTTTT 59.128 50.000 0.00 0.00 0.00 2.43
915 1310 0.250124 TGGCGTTGTGATCGGAGTTT 60.250 50.000 0.00 0.00 0.00 2.66
916 1311 0.036388 ATGGCGTTGTGATCGGAGTT 60.036 50.000 0.00 0.00 0.00 3.01
917 1312 0.821517 TATGGCGTTGTGATCGGAGT 59.178 50.000 0.00 0.00 0.00 3.85
918 1313 1.593006 GTTATGGCGTTGTGATCGGAG 59.407 52.381 0.00 0.00 0.00 4.63
919 1314 1.647346 GTTATGGCGTTGTGATCGGA 58.353 50.000 0.00 0.00 0.00 4.55
920 1315 0.655733 GGTTATGGCGTTGTGATCGG 59.344 55.000 0.00 0.00 0.00 4.18
921 1316 0.300491 CGGTTATGGCGTTGTGATCG 59.700 55.000 0.00 0.00 0.00 3.69
922 1317 0.027586 GCGGTTATGGCGTTGTGATC 59.972 55.000 0.00 0.00 0.00 2.92
923 1318 1.373590 GGCGGTTATGGCGTTGTGAT 61.374 55.000 0.00 0.00 0.00 3.06
924 1319 2.036006 GGCGGTTATGGCGTTGTGA 61.036 57.895 0.00 0.00 0.00 3.58
925 1320 2.483288 GGCGGTTATGGCGTTGTG 59.517 61.111 0.00 0.00 0.00 3.33
932 1327 2.111043 ATGAGCCGGCGGTTATGG 59.889 61.111 28.82 0.11 0.00 2.74
933 1328 0.813610 TTCATGAGCCGGCGGTTATG 60.814 55.000 28.82 25.62 35.42 1.90
934 1329 0.107410 TTTCATGAGCCGGCGGTTAT 60.107 50.000 28.82 16.14 0.00 1.89
947 1342 3.969899 TCGATCGATCCACTCTTTCATG 58.030 45.455 19.51 1.29 0.00 3.07
948 1343 4.363999 GTTCGATCGATCCACTCTTTCAT 58.636 43.478 20.18 0.00 0.00 2.57
949 1344 3.428999 GGTTCGATCGATCCACTCTTTCA 60.429 47.826 31.19 6.95 34.89 2.69
950 1345 3.117046 GGTTCGATCGATCCACTCTTTC 58.883 50.000 31.19 9.04 34.89 2.62
951 1346 2.159085 GGGTTCGATCGATCCACTCTTT 60.159 50.000 34.56 0.00 36.10 2.52
952 1347 1.409427 GGGTTCGATCGATCCACTCTT 59.591 52.381 34.56 0.00 36.10 2.85
965 1360 3.159213 TGTGGTAGAAGTAGGGTTCGA 57.841 47.619 0.00 0.00 0.00 3.71
966 1361 3.582780 GTTGTGGTAGAAGTAGGGTTCG 58.417 50.000 0.00 0.00 0.00 3.95
967 1362 3.582780 CGTTGTGGTAGAAGTAGGGTTC 58.417 50.000 0.00 0.00 0.00 3.62
968 1363 2.289257 GCGTTGTGGTAGAAGTAGGGTT 60.289 50.000 0.00 0.00 0.00 4.11
969 1364 1.274447 GCGTTGTGGTAGAAGTAGGGT 59.726 52.381 0.00 0.00 0.00 4.34
971 1366 1.625616 CGCGTTGTGGTAGAAGTAGG 58.374 55.000 0.00 0.00 0.00 3.18
972 1367 1.625616 CCGCGTTGTGGTAGAAGTAG 58.374 55.000 4.92 0.00 0.00 2.57
973 1368 0.388907 GCCGCGTTGTGGTAGAAGTA 60.389 55.000 4.92 0.00 35.34 2.24
974 1369 1.666872 GCCGCGTTGTGGTAGAAGT 60.667 57.895 4.92 0.00 35.34 3.01
975 1370 1.374252 AGCCGCGTTGTGGTAGAAG 60.374 57.895 4.92 0.00 35.34 2.85
976 1371 1.666553 CAGCCGCGTTGTGGTAGAA 60.667 57.895 4.92 0.00 35.34 2.10
977 1372 1.884075 ATCAGCCGCGTTGTGGTAGA 61.884 55.000 4.92 0.00 35.34 2.59
978 1373 1.447838 ATCAGCCGCGTTGTGGTAG 60.448 57.895 4.92 0.00 35.34 3.18
980 1375 3.049674 CATCAGCCGCGTTGTGGT 61.050 61.111 4.92 0.00 35.34 4.16
981 1376 4.465512 GCATCAGCCGCGTTGTGG 62.466 66.667 4.92 1.70 36.10 4.17
1096 1491 2.003548 GGCCCTTGAGGAGGTGGAT 61.004 63.158 0.00 0.00 44.71 3.41
1617 3015 0.538287 GACTGGGTGCCTCAAAGCTT 60.538 55.000 0.00 0.00 0.00 3.74
1697 3095 3.805066 TGGATGGGTCTGATTGTTTGA 57.195 42.857 0.00 0.00 0.00 2.69
2393 3802 0.879765 GCTGCTGCAAGAACATCTGT 59.120 50.000 11.11 0.00 39.41 3.41
2491 3900 2.366570 GGAGCACCTCCTCCTCCT 59.633 66.667 4.04 0.00 46.41 3.69
2538 3947 3.706373 GCGCCACCTCCTCCTCAA 61.706 66.667 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.