Multiple sequence alignment - TraesCS2A01G173400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G173400 chr2A 100.000 2522 0 0 529 3050 131325137 131322616 0.000000e+00 4658
1 TraesCS2A01G173400 chr2A 100.000 148 0 0 1 148 131325665 131325518 1.080000e-69 274
2 TraesCS2A01G173400 chr2A 93.846 130 8 0 2920 3049 306176501 306176372 2.400000e-46 196
3 TraesCS2A01G173400 chr2A 92.593 135 10 0 2915 3049 423774620 423774754 8.630000e-46 195
4 TraesCS2A01G173400 chr2A 93.182 132 9 0 2918 3049 612670006 612669875 8.630000e-46 195
5 TraesCS2A01G173400 chr2A 97.778 90 2 0 529 618 131324833 131324744 4.070000e-34 156
6 TraesCS2A01G173400 chr2A 97.778 90 2 0 833 922 131325137 131325048 4.070000e-34 156
7 TraesCS2A01G173400 chr2D 92.789 2108 94 21 836 2921 125272268 125270197 0.000000e+00 2998
8 TraesCS2A01G173400 chr2D 96.552 87 3 0 532 618 125272268 125272182 8.810000e-31 145
9 TraesCS2A01G173400 chr2B 90.503 2106 90 35 843 2921 178168269 178166247 0.000000e+00 2680
10 TraesCS2A01G173400 chr6A 93.985 133 8 0 2917 3049 488058086 488057954 5.160000e-48 202
11 TraesCS2A01G173400 chr6A 93.284 134 9 0 2917 3050 467577306 467577173 6.670000e-47 198
12 TraesCS2A01G173400 chr1A 93.985 133 8 0 2917 3049 354954610 354954478 5.160000e-48 202
13 TraesCS2A01G173400 chr3A 93.182 132 9 0 2918 3049 363316286 363316155 8.630000e-46 195
14 TraesCS2A01G173400 chr6B 90.476 147 11 3 2905 3049 580307629 580307774 1.120000e-44 191
15 TraesCS2A01G173400 chr5A 91.971 137 10 1 2913 3049 275796092 275795957 1.120000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G173400 chr2A 131322616 131325665 3049 True 1311.0 4658 98.8890 1 3050 4 chr2A.!!$R3 3049
1 TraesCS2A01G173400 chr2D 125270197 125272268 2071 True 1571.5 2998 94.6705 532 2921 2 chr2D.!!$R1 2389
2 TraesCS2A01G173400 chr2B 178166247 178168269 2022 True 2680.0 2680 90.5030 843 2921 1 chr2B.!!$R1 2078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.036010 CTTACTGGCCCTGGACACAG 60.036 60.0 0.0 2.95 44.51 3.66 F
631 632 0.038166 ACTCGGGGCATGTTTGTGAT 59.962 50.0 0.0 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1276 2.746671 CACTGGCAGCTGGCTCTG 60.747 66.667 36.39 26.83 44.01 3.35 R
2258 2296 0.517316 GCTTGCGTCCACTCGAATTT 59.483 50.000 0.00 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.271488 ACATGAACCAAAGACACCATAATG 57.729 37.500 0.00 0.00 0.00 1.90
24 25 5.185635 ACATGAACCAAAGACACCATAATGG 59.814 40.000 0.00 0.00 45.02 3.16
39 40 5.010282 CCATAATGGTAATCTTACTGGCCC 58.990 45.833 0.00 0.00 34.16 5.80
40 41 5.222130 CCATAATGGTAATCTTACTGGCCCT 60.222 44.000 0.00 0.00 34.16 5.19
41 42 3.864789 ATGGTAATCTTACTGGCCCTG 57.135 47.619 0.00 0.00 34.16 4.45
42 43 1.843851 TGGTAATCTTACTGGCCCTGG 59.156 52.381 0.00 0.00 34.16 4.45
43 44 2.124411 GGTAATCTTACTGGCCCTGGA 58.876 52.381 0.00 0.00 34.16 3.86
44 45 2.158798 GGTAATCTTACTGGCCCTGGAC 60.159 54.545 0.00 0.00 34.16 4.02
45 46 1.668826 AATCTTACTGGCCCTGGACA 58.331 50.000 0.00 0.00 0.00 4.02
46 47 0.912486 ATCTTACTGGCCCTGGACAC 59.088 55.000 0.00 0.00 0.00 3.67
47 48 0.472925 TCTTACTGGCCCTGGACACA 60.473 55.000 0.00 0.00 0.00 3.72
48 49 0.036010 CTTACTGGCCCTGGACACAG 60.036 60.000 0.00 2.95 44.51 3.66
126 127 7.468922 TCAGCTTGTGATTGATTAATAGACG 57.531 36.000 0.00 0.00 0.00 4.18
127 128 7.264947 TCAGCTTGTGATTGATTAATAGACGA 58.735 34.615 0.00 0.00 0.00 4.20
128 129 7.436376 TCAGCTTGTGATTGATTAATAGACGAG 59.564 37.037 0.00 5.37 0.00 4.18
129 130 6.703607 AGCTTGTGATTGATTAATAGACGAGG 59.296 38.462 0.00 0.00 0.00 4.63
130 131 6.073548 GCTTGTGATTGATTAATAGACGAGGG 60.074 42.308 0.00 0.00 0.00 4.30
131 132 6.724893 TGTGATTGATTAATAGACGAGGGA 57.275 37.500 0.00 0.00 0.00 4.20
132 133 6.749139 TGTGATTGATTAATAGACGAGGGAG 58.251 40.000 0.00 0.00 0.00 4.30
133 134 5.635700 GTGATTGATTAATAGACGAGGGAGC 59.364 44.000 0.00 0.00 0.00 4.70
134 135 4.602340 TTGATTAATAGACGAGGGAGCC 57.398 45.455 0.00 0.00 0.00 4.70
135 136 2.557056 TGATTAATAGACGAGGGAGCCG 59.443 50.000 0.00 0.00 0.00 5.52
136 137 1.325355 TTAATAGACGAGGGAGCCGG 58.675 55.000 0.00 0.00 0.00 6.13
137 138 1.177256 TAATAGACGAGGGAGCCGGC 61.177 60.000 21.89 21.89 34.76 6.13
574 575 3.062763 ACACTGAGCTTGAGATTGTTCG 58.937 45.455 0.00 0.00 0.00 3.95
582 583 3.866449 GCTTGAGATTGTTCGGTTCCTCT 60.866 47.826 0.00 0.00 0.00 3.69
583 584 4.319177 CTTGAGATTGTTCGGTTCCTCTT 58.681 43.478 0.00 0.00 0.00 2.85
607 608 3.797256 GCGCCAATAGAGTACAGTACAAG 59.203 47.826 13.37 0.00 0.00 3.16
608 609 4.439700 GCGCCAATAGAGTACAGTACAAGA 60.440 45.833 13.37 0.00 0.00 3.02
609 610 5.647589 CGCCAATAGAGTACAGTACAAGAA 58.352 41.667 13.37 0.00 0.00 2.52
610 611 6.097356 CGCCAATAGAGTACAGTACAAGAAA 58.903 40.000 13.37 0.00 0.00 2.52
611 612 6.034683 CGCCAATAGAGTACAGTACAAGAAAC 59.965 42.308 13.37 0.00 0.00 2.78
612 613 6.872020 GCCAATAGAGTACAGTACAAGAAACA 59.128 38.462 13.37 0.00 0.00 2.83
613 614 7.148623 GCCAATAGAGTACAGTACAAGAAACAC 60.149 40.741 13.37 0.00 0.00 3.32
614 615 8.088981 CCAATAGAGTACAGTACAAGAAACACT 58.911 37.037 13.37 0.00 0.00 3.55
615 616 9.130312 CAATAGAGTACAGTACAAGAAACACTC 57.870 37.037 13.37 0.13 33.08 3.51
616 617 5.759963 AGAGTACAGTACAAGAAACACTCG 58.240 41.667 13.37 0.00 36.99 4.18
617 618 4.868067 AGTACAGTACAAGAAACACTCGG 58.132 43.478 13.37 0.00 0.00 4.63
618 619 3.107642 ACAGTACAAGAAACACTCGGG 57.892 47.619 0.00 0.00 0.00 5.14
619 620 2.224209 ACAGTACAAGAAACACTCGGGG 60.224 50.000 0.00 0.00 0.00 5.73
620 621 1.154197 GTACAAGAAACACTCGGGGC 58.846 55.000 0.00 0.00 0.00 5.80
621 622 0.759959 TACAAGAAACACTCGGGGCA 59.240 50.000 0.00 0.00 0.00 5.36
622 623 0.110486 ACAAGAAACACTCGGGGCAT 59.890 50.000 0.00 0.00 0.00 4.40
623 624 0.523072 CAAGAAACACTCGGGGCATG 59.477 55.000 0.00 0.00 0.00 4.06
624 625 0.110486 AAGAAACACTCGGGGCATGT 59.890 50.000 0.00 0.00 0.00 3.21
625 626 0.110486 AGAAACACTCGGGGCATGTT 59.890 50.000 0.00 0.00 38.18 2.71
626 627 0.958822 GAAACACTCGGGGCATGTTT 59.041 50.000 2.41 2.41 46.48 2.83
627 628 0.673437 AAACACTCGGGGCATGTTTG 59.327 50.000 2.00 0.00 43.19 2.93
628 629 0.467290 AACACTCGGGGCATGTTTGT 60.467 50.000 0.00 0.00 32.70 2.83
629 630 1.172180 ACACTCGGGGCATGTTTGTG 61.172 55.000 0.00 0.00 0.00 3.33
630 631 0.888736 CACTCGGGGCATGTTTGTGA 60.889 55.000 0.00 0.00 0.00 3.58
631 632 0.038166 ACTCGGGGCATGTTTGTGAT 59.962 50.000 0.00 0.00 0.00 3.06
632 633 1.176527 CTCGGGGCATGTTTGTGATT 58.823 50.000 0.00 0.00 0.00 2.57
633 634 0.887247 TCGGGGCATGTTTGTGATTG 59.113 50.000 0.00 0.00 0.00 2.67
634 635 0.108709 CGGGGCATGTTTGTGATTGG 60.109 55.000 0.00 0.00 0.00 3.16
635 636 0.975887 GGGGCATGTTTGTGATTGGT 59.024 50.000 0.00 0.00 0.00 3.67
636 637 1.066929 GGGGCATGTTTGTGATTGGTC 60.067 52.381 0.00 0.00 0.00 4.02
637 638 1.066929 GGGCATGTTTGTGATTGGTCC 60.067 52.381 0.00 0.00 0.00 4.46
638 639 1.895131 GGCATGTTTGTGATTGGTCCT 59.105 47.619 0.00 0.00 0.00 3.85
639 640 2.299867 GGCATGTTTGTGATTGGTCCTT 59.700 45.455 0.00 0.00 0.00 3.36
640 641 3.244181 GGCATGTTTGTGATTGGTCCTTT 60.244 43.478 0.00 0.00 0.00 3.11
641 642 4.021544 GGCATGTTTGTGATTGGTCCTTTA 60.022 41.667 0.00 0.00 0.00 1.85
642 643 5.163513 GCATGTTTGTGATTGGTCCTTTAG 58.836 41.667 0.00 0.00 0.00 1.85
643 644 5.048083 GCATGTTTGTGATTGGTCCTTTAGA 60.048 40.000 0.00 0.00 0.00 2.10
644 645 6.350445 GCATGTTTGTGATTGGTCCTTTAGAT 60.350 38.462 0.00 0.00 0.00 1.98
645 646 6.573664 TGTTTGTGATTGGTCCTTTAGATG 57.426 37.500 0.00 0.00 0.00 2.90
646 647 6.303054 TGTTTGTGATTGGTCCTTTAGATGA 58.697 36.000 0.00 0.00 0.00 2.92
647 648 6.775142 TGTTTGTGATTGGTCCTTTAGATGAA 59.225 34.615 0.00 0.00 0.00 2.57
648 649 7.286546 TGTTTGTGATTGGTCCTTTAGATGAAA 59.713 33.333 0.00 0.00 0.00 2.69
649 650 7.831691 TTGTGATTGGTCCTTTAGATGAAAA 57.168 32.000 0.00 0.00 0.00 2.29
650 651 7.831691 TGTGATTGGTCCTTTAGATGAAAAA 57.168 32.000 0.00 0.00 0.00 1.94
651 652 7.885297 TGTGATTGGTCCTTTAGATGAAAAAG 58.115 34.615 0.00 0.00 34.40 2.27
652 653 7.505585 TGTGATTGGTCCTTTAGATGAAAAAGT 59.494 33.333 0.00 0.00 33.05 2.66
653 654 8.023706 GTGATTGGTCCTTTAGATGAAAAAGTC 58.976 37.037 0.00 0.00 33.05 3.01
654 655 7.944554 TGATTGGTCCTTTAGATGAAAAAGTCT 59.055 33.333 0.00 0.00 33.05 3.24
655 656 7.510549 TTGGTCCTTTAGATGAAAAAGTCTG 57.489 36.000 0.00 0.00 33.05 3.51
656 657 6.601332 TGGTCCTTTAGATGAAAAAGTCTGT 58.399 36.000 0.00 0.00 33.05 3.41
657 658 7.741785 TGGTCCTTTAGATGAAAAAGTCTGTA 58.258 34.615 0.00 0.00 33.05 2.74
658 659 8.215050 TGGTCCTTTAGATGAAAAAGTCTGTAA 58.785 33.333 0.00 0.00 33.05 2.41
659 660 9.063615 GGTCCTTTAGATGAAAAAGTCTGTAAA 57.936 33.333 0.00 0.00 33.05 2.01
693 694 8.944212 ATTGTTTGTACGTTTAGTATTTCTGC 57.056 30.769 0.00 0.00 37.69 4.26
694 695 6.890558 TGTTTGTACGTTTAGTATTTCTGCC 58.109 36.000 0.00 0.00 37.69 4.85
695 696 6.707161 TGTTTGTACGTTTAGTATTTCTGCCT 59.293 34.615 0.00 0.00 37.69 4.75
696 697 7.227116 TGTTTGTACGTTTAGTATTTCTGCCTT 59.773 33.333 0.00 0.00 37.69 4.35
697 698 6.715344 TGTACGTTTAGTATTTCTGCCTTG 57.285 37.500 0.00 0.00 37.69 3.61
698 699 5.640357 TGTACGTTTAGTATTTCTGCCTTGG 59.360 40.000 0.00 0.00 37.69 3.61
699 700 4.901868 ACGTTTAGTATTTCTGCCTTGGA 58.098 39.130 0.00 0.00 0.00 3.53
700 701 4.694037 ACGTTTAGTATTTCTGCCTTGGAC 59.306 41.667 0.00 0.00 0.00 4.02
701 702 4.201685 CGTTTAGTATTTCTGCCTTGGACG 60.202 45.833 0.00 0.00 0.00 4.79
702 703 4.546829 TTAGTATTTCTGCCTTGGACGT 57.453 40.909 0.00 0.00 0.00 4.34
703 704 5.664294 TTAGTATTTCTGCCTTGGACGTA 57.336 39.130 0.00 0.00 0.00 3.57
704 705 4.546829 AGTATTTCTGCCTTGGACGTAA 57.453 40.909 0.00 0.00 0.00 3.18
705 706 5.099042 AGTATTTCTGCCTTGGACGTAAT 57.901 39.130 0.00 0.00 0.00 1.89
706 707 5.116882 AGTATTTCTGCCTTGGACGTAATC 58.883 41.667 0.00 0.00 0.00 1.75
707 708 3.410631 TTTCTGCCTTGGACGTAATCA 57.589 42.857 0.00 0.00 0.00 2.57
708 709 2.672961 TCTGCCTTGGACGTAATCAG 57.327 50.000 0.00 0.00 0.00 2.90
709 710 1.009829 CTGCCTTGGACGTAATCAGC 58.990 55.000 0.00 0.00 0.00 4.26
710 711 0.323302 TGCCTTGGACGTAATCAGCA 59.677 50.000 0.00 0.00 0.00 4.41
711 712 1.271108 TGCCTTGGACGTAATCAGCAA 60.271 47.619 0.00 0.00 0.00 3.91
712 713 1.810151 GCCTTGGACGTAATCAGCAAA 59.190 47.619 0.00 0.00 0.00 3.68
713 714 2.423538 GCCTTGGACGTAATCAGCAAAT 59.576 45.455 0.00 0.00 0.00 2.32
714 715 3.731867 GCCTTGGACGTAATCAGCAAATG 60.732 47.826 0.00 0.00 0.00 2.32
715 716 3.429085 CTTGGACGTAATCAGCAAATGC 58.571 45.455 0.00 0.00 42.49 3.56
716 717 2.431454 TGGACGTAATCAGCAAATGCA 58.569 42.857 8.28 0.00 45.16 3.96
717 718 2.161410 TGGACGTAATCAGCAAATGCAC 59.839 45.455 8.28 0.00 45.16 4.57
718 719 2.161410 GGACGTAATCAGCAAATGCACA 59.839 45.455 8.28 0.00 45.16 4.57
719 720 3.365868 GGACGTAATCAGCAAATGCACAA 60.366 43.478 8.28 0.00 45.16 3.33
720 721 3.564511 ACGTAATCAGCAAATGCACAAC 58.435 40.909 8.28 0.00 45.16 3.32
721 722 3.004210 ACGTAATCAGCAAATGCACAACA 59.996 39.130 8.28 0.00 45.16 3.33
722 723 3.980134 CGTAATCAGCAAATGCACAACAA 59.020 39.130 8.28 0.00 45.16 2.83
723 724 4.622313 CGTAATCAGCAAATGCACAACAAT 59.378 37.500 8.28 0.00 45.16 2.71
724 725 5.443562 CGTAATCAGCAAATGCACAACAATG 60.444 40.000 8.28 0.00 45.16 2.82
725 726 2.136728 TCAGCAAATGCACAACAATGC 58.863 42.857 8.28 0.00 46.32 3.56
731 732 3.223854 GCACAACAATGCACGCAC 58.776 55.556 0.00 0.00 45.39 5.34
732 733 2.638074 GCACAACAATGCACGCACG 61.638 57.895 0.00 0.00 45.39 5.34
733 734 2.010286 CACAACAATGCACGCACGG 61.010 57.895 0.00 0.00 0.00 4.94
734 735 2.183504 ACAACAATGCACGCACGGA 61.184 52.632 0.00 0.00 0.00 4.69
735 736 1.209898 CAACAATGCACGCACGGAT 59.790 52.632 0.00 0.00 0.00 4.18
736 737 0.445829 CAACAATGCACGCACGGATA 59.554 50.000 0.00 0.00 0.00 2.59
737 738 0.726827 AACAATGCACGCACGGATAG 59.273 50.000 0.00 0.00 0.00 2.08
738 739 0.391130 ACAATGCACGCACGGATAGT 60.391 50.000 0.00 0.00 0.00 2.12
739 740 0.726827 CAATGCACGCACGGATAGTT 59.273 50.000 0.00 0.00 0.00 2.24
740 741 1.130373 CAATGCACGCACGGATAGTTT 59.870 47.619 0.00 0.00 0.00 2.66
741 742 1.448985 ATGCACGCACGGATAGTTTT 58.551 45.000 0.00 0.00 0.00 2.43
742 743 1.231221 TGCACGCACGGATAGTTTTT 58.769 45.000 0.00 0.00 0.00 1.94
763 764 6.790285 TTTTACAGAATTTACGGTCTGGTC 57.210 37.500 5.72 0.00 44.61 4.02
764 765 5.733620 TTACAGAATTTACGGTCTGGTCT 57.266 39.130 5.72 0.00 44.61 3.85
765 766 6.839124 TTACAGAATTTACGGTCTGGTCTA 57.161 37.500 5.72 0.00 44.61 2.59
766 767 5.326200 ACAGAATTTACGGTCTGGTCTAG 57.674 43.478 5.72 0.00 44.61 2.43
767 768 4.113354 CAGAATTTACGGTCTGGTCTAGC 58.887 47.826 0.00 0.00 38.08 3.42
768 769 4.024670 AGAATTTACGGTCTGGTCTAGCT 58.975 43.478 0.00 0.00 0.00 3.32
769 770 3.802948 ATTTACGGTCTGGTCTAGCTG 57.197 47.619 0.00 0.00 0.00 4.24
770 771 1.471119 TTACGGTCTGGTCTAGCTGG 58.529 55.000 0.00 0.00 0.00 4.85
771 772 1.035932 TACGGTCTGGTCTAGCTGGC 61.036 60.000 0.00 0.00 0.00 4.85
772 773 2.351244 CGGTCTGGTCTAGCTGGCA 61.351 63.158 0.00 0.00 0.00 4.92
773 774 1.519719 GGTCTGGTCTAGCTGGCAG 59.480 63.158 10.94 10.94 0.00 4.85
774 775 1.519719 GTCTGGTCTAGCTGGCAGG 59.480 63.158 17.64 0.00 0.00 4.85
775 776 1.079256 TCTGGTCTAGCTGGCAGGT 59.921 57.895 23.98 23.98 0.00 4.00
776 777 0.545309 TCTGGTCTAGCTGGCAGGTT 60.545 55.000 25.69 1.41 0.00 3.50
777 778 0.326264 CTGGTCTAGCTGGCAGGTTT 59.674 55.000 25.69 0.00 0.00 3.27
778 779 0.771127 TGGTCTAGCTGGCAGGTTTT 59.229 50.000 25.69 0.00 0.00 2.43
779 780 1.271379 TGGTCTAGCTGGCAGGTTTTC 60.271 52.381 25.69 14.11 0.00 2.29
780 781 1.271379 GGTCTAGCTGGCAGGTTTTCA 60.271 52.381 25.69 5.56 0.00 2.69
781 782 2.619074 GGTCTAGCTGGCAGGTTTTCAT 60.619 50.000 25.69 0.00 0.00 2.57
782 783 3.084786 GTCTAGCTGGCAGGTTTTCATT 58.915 45.455 25.69 0.00 0.00 2.57
783 784 3.084039 TCTAGCTGGCAGGTTTTCATTG 58.916 45.455 25.69 6.89 0.00 2.82
784 785 0.971386 AGCTGGCAGGTTTTCATTGG 59.029 50.000 14.51 0.00 0.00 3.16
785 786 0.968405 GCTGGCAGGTTTTCATTGGA 59.032 50.000 17.64 0.00 0.00 3.53
786 787 1.551883 GCTGGCAGGTTTTCATTGGAT 59.448 47.619 17.64 0.00 0.00 3.41
787 788 2.760092 GCTGGCAGGTTTTCATTGGATA 59.240 45.455 17.64 0.00 0.00 2.59
788 789 3.181483 GCTGGCAGGTTTTCATTGGATAG 60.181 47.826 17.64 0.00 0.00 2.08
789 790 4.272489 CTGGCAGGTTTTCATTGGATAGA 58.728 43.478 6.61 0.00 0.00 1.98
790 791 4.671831 TGGCAGGTTTTCATTGGATAGAA 58.328 39.130 0.00 0.00 0.00 2.10
791 792 5.083122 TGGCAGGTTTTCATTGGATAGAAA 58.917 37.500 0.00 0.00 32.34 2.52
792 793 5.721000 TGGCAGGTTTTCATTGGATAGAAAT 59.279 36.000 0.00 0.00 34.10 2.17
793 794 6.894654 TGGCAGGTTTTCATTGGATAGAAATA 59.105 34.615 0.00 0.00 34.10 1.40
794 795 7.398618 TGGCAGGTTTTCATTGGATAGAAATAA 59.601 33.333 0.00 0.00 34.10 1.40
795 796 7.922811 GGCAGGTTTTCATTGGATAGAAATAAG 59.077 37.037 0.00 0.00 34.10 1.73
796 797 7.922811 GCAGGTTTTCATTGGATAGAAATAAGG 59.077 37.037 0.00 0.00 34.10 2.69
797 798 8.971073 CAGGTTTTCATTGGATAGAAATAAGGT 58.029 33.333 0.00 0.00 34.10 3.50
798 799 8.971073 AGGTTTTCATTGGATAGAAATAAGGTG 58.029 33.333 0.00 0.00 34.10 4.00
799 800 8.966868 GGTTTTCATTGGATAGAAATAAGGTGA 58.033 33.333 0.00 0.00 34.10 4.02
801 802 8.752005 TTTCATTGGATAGAAATAAGGTGAGG 57.248 34.615 0.00 0.00 0.00 3.86
802 803 6.841601 TCATTGGATAGAAATAAGGTGAGGG 58.158 40.000 0.00 0.00 0.00 4.30
803 804 6.619437 TCATTGGATAGAAATAAGGTGAGGGA 59.381 38.462 0.00 0.00 0.00 4.20
804 805 6.500589 TTGGATAGAAATAAGGTGAGGGAG 57.499 41.667 0.00 0.00 0.00 4.30
805 806 5.788430 TGGATAGAAATAAGGTGAGGGAGA 58.212 41.667 0.00 0.00 0.00 3.71
806 807 5.841237 TGGATAGAAATAAGGTGAGGGAGAG 59.159 44.000 0.00 0.00 0.00 3.20
807 808 6.078664 GGATAGAAATAAGGTGAGGGAGAGA 58.921 44.000 0.00 0.00 0.00 3.10
808 809 6.555360 GGATAGAAATAAGGTGAGGGAGAGAA 59.445 42.308 0.00 0.00 0.00 2.87
809 810 5.948742 AGAAATAAGGTGAGGGAGAGAAG 57.051 43.478 0.00 0.00 0.00 2.85
810 811 5.594777 AGAAATAAGGTGAGGGAGAGAAGA 58.405 41.667 0.00 0.00 0.00 2.87
811 812 6.209026 AGAAATAAGGTGAGGGAGAGAAGAT 58.791 40.000 0.00 0.00 0.00 2.40
812 813 6.676189 AGAAATAAGGTGAGGGAGAGAAGATT 59.324 38.462 0.00 0.00 0.00 2.40
813 814 7.846823 AGAAATAAGGTGAGGGAGAGAAGATTA 59.153 37.037 0.00 0.00 0.00 1.75
814 815 7.610580 AATAAGGTGAGGGAGAGAAGATTAG 57.389 40.000 0.00 0.00 0.00 1.73
815 816 3.922375 AGGTGAGGGAGAGAAGATTAGG 58.078 50.000 0.00 0.00 0.00 2.69
816 817 3.273618 AGGTGAGGGAGAGAAGATTAGGT 59.726 47.826 0.00 0.00 0.00 3.08
817 818 3.386402 GGTGAGGGAGAGAAGATTAGGTG 59.614 52.174 0.00 0.00 0.00 4.00
818 819 3.386402 GTGAGGGAGAGAAGATTAGGTGG 59.614 52.174 0.00 0.00 0.00 4.61
819 820 2.969262 GAGGGAGAGAAGATTAGGTGGG 59.031 54.545 0.00 0.00 0.00 4.61
820 821 1.418264 GGGAGAGAAGATTAGGTGGGC 59.582 57.143 0.00 0.00 0.00 5.36
821 822 2.119495 GGAGAGAAGATTAGGTGGGCA 58.881 52.381 0.00 0.00 0.00 5.36
822 823 2.505819 GGAGAGAAGATTAGGTGGGCAA 59.494 50.000 0.00 0.00 0.00 4.52
823 824 3.432890 GGAGAGAAGATTAGGTGGGCAAG 60.433 52.174 0.00 0.00 0.00 4.01
824 825 3.452627 GAGAGAAGATTAGGTGGGCAAGA 59.547 47.826 0.00 0.00 0.00 3.02
825 826 3.198853 AGAGAAGATTAGGTGGGCAAGAC 59.801 47.826 0.00 0.00 0.00 3.01
826 827 2.239907 AGAAGATTAGGTGGGCAAGACC 59.760 50.000 0.00 0.00 37.93 3.85
836 837 3.911719 GGCAAGACCCCATCAGATT 57.088 52.632 0.00 0.00 0.00 2.40
838 839 2.856222 GGCAAGACCCCATCAGATTAG 58.144 52.381 0.00 0.00 0.00 1.73
839 840 2.173569 GGCAAGACCCCATCAGATTAGT 59.826 50.000 0.00 0.00 0.00 2.24
840 841 3.372025 GGCAAGACCCCATCAGATTAGTT 60.372 47.826 0.00 0.00 0.00 2.24
841 842 3.629398 GCAAGACCCCATCAGATTAGTTG 59.371 47.826 0.00 0.00 0.00 3.16
864 865 3.305964 CAAATGCAAGCTTGACACTGAG 58.694 45.455 30.39 13.20 0.00 3.35
878 879 3.062763 ACACTGAGCTTGAGATTGTTCG 58.937 45.455 0.00 0.00 0.00 3.95
886 887 2.762535 TGAGATTGTTCGGTTCCTCC 57.237 50.000 0.00 0.00 0.00 4.30
887 888 2.257207 TGAGATTGTTCGGTTCCTCCT 58.743 47.619 0.00 0.00 0.00 3.69
908 909 4.501571 CCTTGCGCCAATAGAGTACAGTAT 60.502 45.833 4.18 0.00 0.00 2.12
926 938 5.243283 ACAGTATAAGAAACACTCGGTGTCT 59.757 40.000 9.63 0.00 46.79 3.41
943 955 3.546670 GTGTCTGCTCGTAAACCTTATCG 59.453 47.826 0.00 0.00 0.00 2.92
951 963 2.743126 CGTAAACCTTATCGCCACCAAA 59.257 45.455 0.00 0.00 0.00 3.28
952 964 3.425227 CGTAAACCTTATCGCCACCAAAC 60.425 47.826 0.00 0.00 0.00 2.93
953 965 2.579410 AACCTTATCGCCACCAAACT 57.421 45.000 0.00 0.00 0.00 2.66
954 966 2.109425 ACCTTATCGCCACCAAACTC 57.891 50.000 0.00 0.00 0.00 3.01
955 967 1.339727 ACCTTATCGCCACCAAACTCC 60.340 52.381 0.00 0.00 0.00 3.85
956 968 1.339631 CCTTATCGCCACCAAACTCCA 60.340 52.381 0.00 0.00 0.00 3.86
957 969 2.432444 CTTATCGCCACCAAACTCCAA 58.568 47.619 0.00 0.00 0.00 3.53
958 970 2.107950 TATCGCCACCAAACTCCAAG 57.892 50.000 0.00 0.00 0.00 3.61
959 971 0.609131 ATCGCCACCAAACTCCAAGG 60.609 55.000 0.00 0.00 0.00 3.61
960 972 1.228124 CGCCACCAAACTCCAAGGA 60.228 57.895 0.00 0.00 0.00 3.36
966 978 0.961753 CCAAACTCCAAGGACCAAGC 59.038 55.000 0.00 0.00 0.00 4.01
992 1004 3.119096 GACGGCCGGAAACTGAGC 61.119 66.667 31.76 2.83 0.00 4.26
993 1005 3.591254 GACGGCCGGAAACTGAGCT 62.591 63.158 31.76 3.06 0.00 4.09
994 1006 3.121030 CGGCCGGAAACTGAGCTG 61.121 66.667 20.10 0.00 0.00 4.24
1155 1170 3.608662 TTCGAACGCACCGTCCCT 61.609 61.111 0.00 0.00 39.99 4.20
1162 1177 2.760385 GCACCGTCCCTCCTAGCT 60.760 66.667 0.00 0.00 0.00 3.32
1167 1182 3.597728 GTCCCTCCTAGCTCCGCG 61.598 72.222 0.00 0.00 0.00 6.46
1839 1857 2.203337 GTGCACCAGGACAGGCAA 60.203 61.111 5.22 0.00 38.10 4.52
1932 1950 1.687195 CGCGTTCTACGTGTTCGAC 59.313 57.895 0.00 0.00 45.94 4.20
2125 2149 3.122613 GTGTTGATTCTTCGAGCTGTGAG 59.877 47.826 0.00 0.00 0.00 3.51
2160 2190 1.063649 CTTGAGGCACATGCGATGC 59.936 57.895 0.00 0.00 43.26 3.91
2164 2194 2.101575 GGCACATGCGATGCACTG 59.898 61.111 8.81 0.00 45.27 3.66
2169 2199 1.602377 CACATGCGATGCACTGATGAT 59.398 47.619 0.00 0.00 43.04 2.45
2177 2207 3.311596 CGATGCACTGATGATGAACATGT 59.688 43.478 0.00 0.00 39.56 3.21
2179 2209 3.011818 TGCACTGATGATGAACATGTCC 58.988 45.455 0.00 0.00 39.56 4.02
2186 2216 1.628340 TGATGAACATGTCCGGTTCCT 59.372 47.619 0.00 0.00 43.05 3.36
2191 2229 1.933021 ACATGTCCGGTTCCTAGTGA 58.067 50.000 0.00 0.00 0.00 3.41
2200 2238 2.271800 GGTTCCTAGTGACTGATTGCG 58.728 52.381 0.00 0.00 0.00 4.85
2250 2288 4.782252 CGAGTTGTTCGTTGGTTCTAAA 57.218 40.909 0.00 0.00 44.27 1.85
2328 2366 3.581163 AAACAGGGTCGTGTTTGGT 57.419 47.368 17.39 0.00 46.53 3.67
2329 2367 1.385528 AAACAGGGTCGTGTTTGGTC 58.614 50.000 17.39 0.00 46.53 4.02
2330 2368 0.812412 AACAGGGTCGTGTTTGGTCG 60.812 55.000 3.55 0.00 37.36 4.79
2331 2369 1.227438 CAGGGTCGTGTTTGGTCGT 60.227 57.895 0.00 0.00 0.00 4.34
2332 2370 0.032403 CAGGGTCGTGTTTGGTCGTA 59.968 55.000 0.00 0.00 0.00 3.43
2333 2371 0.032540 AGGGTCGTGTTTGGTCGTAC 59.967 55.000 0.00 0.00 0.00 3.67
2334 2372 1.277495 GGGTCGTGTTTGGTCGTACG 61.277 60.000 9.53 9.53 37.85 3.67
2335 2373 0.594796 GGTCGTGTTTGGTCGTACGT 60.595 55.000 16.05 0.00 37.74 3.57
2336 2374 1.334599 GGTCGTGTTTGGTCGTACGTA 60.335 52.381 16.05 0.00 37.74 3.57
2337 2375 2.584791 GTCGTGTTTGGTCGTACGTAT 58.415 47.619 16.05 0.00 37.74 3.06
2381 2419 2.266055 CCAGGCACGAGAGGTTCC 59.734 66.667 0.00 0.00 0.00 3.62
2502 2541 1.404851 GCAGTTGAGCTACCAGTCTCC 60.405 57.143 0.00 0.00 0.00 3.71
2566 2606 2.587194 CAGCCGGAGCATTCTCGG 60.587 66.667 5.05 0.00 43.56 4.63
2791 2831 4.870221 TGAATCAACTTCAGATGCATCG 57.130 40.909 20.67 15.25 38.97 3.84
2801 2841 5.821470 ACTTCAGATGCATCGAGAATTCAAT 59.179 36.000 26.79 14.11 0.00 2.57
2850 2890 1.059098 TGGCTGTCATGAGTTCCTGT 58.941 50.000 0.00 0.00 0.00 4.00
2852 2892 1.354040 GCTGTCATGAGTTCCTGTCG 58.646 55.000 0.00 0.00 0.00 4.35
2855 2895 0.895530 GTCATGAGTTCCTGTCGGGA 59.104 55.000 0.00 0.00 43.41 5.14
2902 2946 3.933861 AAGGAGGCCGACATTTATTCT 57.066 42.857 0.00 0.00 0.00 2.40
2931 2975 1.839424 CCTGTTTAGGCCTCCTTTGG 58.161 55.000 9.68 3.76 37.25 3.28
2932 2976 1.075536 CCTGTTTAGGCCTCCTTTGGT 59.924 52.381 9.68 0.00 37.25 3.67
2933 2977 2.490902 CCTGTTTAGGCCTCCTTTGGTT 60.491 50.000 9.68 0.00 37.25 3.67
2934 2978 3.230976 CTGTTTAGGCCTCCTTTGGTTT 58.769 45.455 9.68 0.00 34.61 3.27
2935 2979 2.962421 TGTTTAGGCCTCCTTTGGTTTG 59.038 45.455 9.68 0.00 34.61 2.93
2936 2980 2.299013 GTTTAGGCCTCCTTTGGTTTGG 59.701 50.000 9.68 0.00 34.61 3.28
2937 2981 1.451449 TAGGCCTCCTTTGGTTTGGA 58.549 50.000 9.68 0.00 34.61 3.53
2938 2982 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2945 2989 5.551305 CTCCTTTGGTTTGGAGGAATTTT 57.449 39.130 0.00 0.00 44.44 1.82
2946 2990 6.664428 CTCCTTTGGTTTGGAGGAATTTTA 57.336 37.500 0.00 0.00 44.44 1.52
2947 2991 7.244886 CTCCTTTGGTTTGGAGGAATTTTAT 57.755 36.000 0.00 0.00 44.44 1.40
2948 2992 8.361169 CTCCTTTGGTTTGGAGGAATTTTATA 57.639 34.615 0.00 0.00 44.44 0.98
2949 2993 8.361169 TCCTTTGGTTTGGAGGAATTTTATAG 57.639 34.615 0.00 0.00 36.67 1.31
2950 2994 7.398904 TCCTTTGGTTTGGAGGAATTTTATAGG 59.601 37.037 0.00 0.00 36.67 2.57
2951 2995 7.398904 CCTTTGGTTTGGAGGAATTTTATAGGA 59.601 37.037 0.00 0.00 32.11 2.94
2952 2996 8.728596 TTTGGTTTGGAGGAATTTTATAGGAA 57.271 30.769 0.00 0.00 0.00 3.36
2953 2997 8.909423 TTGGTTTGGAGGAATTTTATAGGAAT 57.091 30.769 0.00 0.00 0.00 3.01
2954 2998 8.909423 TGGTTTGGAGGAATTTTATAGGAATT 57.091 30.769 0.00 0.00 0.00 2.17
2955 2999 9.332713 TGGTTTGGAGGAATTTTATAGGAATTT 57.667 29.630 0.00 0.00 0.00 1.82
3003 3047 6.538945 TTTTTGCTTTAGAGTCCTTTGGTT 57.461 33.333 0.00 0.00 0.00 3.67
3004 3048 5.767816 TTTGCTTTAGAGTCCTTTGGTTC 57.232 39.130 0.00 0.00 0.00 3.62
3005 3049 3.399330 TGCTTTAGAGTCCTTTGGTTCG 58.601 45.455 0.00 0.00 0.00 3.95
3006 3050 3.181458 TGCTTTAGAGTCCTTTGGTTCGT 60.181 43.478 0.00 0.00 0.00 3.85
3007 3051 4.039488 TGCTTTAGAGTCCTTTGGTTCGTA 59.961 41.667 0.00 0.00 0.00 3.43
3008 3052 4.626172 GCTTTAGAGTCCTTTGGTTCGTAG 59.374 45.833 0.00 0.00 0.00 3.51
3009 3053 4.796038 TTAGAGTCCTTTGGTTCGTAGG 57.204 45.455 0.00 0.00 0.00 3.18
3010 3054 2.885616 AGAGTCCTTTGGTTCGTAGGA 58.114 47.619 0.00 0.00 35.75 2.94
3011 3055 3.236896 AGAGTCCTTTGGTTCGTAGGAA 58.763 45.455 0.00 0.00 39.65 3.36
3012 3056 3.838903 AGAGTCCTTTGGTTCGTAGGAAT 59.161 43.478 0.50 0.00 39.65 3.01
3013 3057 5.021458 AGAGTCCTTTGGTTCGTAGGAATA 58.979 41.667 0.50 0.00 39.65 1.75
3014 3058 5.127356 AGAGTCCTTTGGTTCGTAGGAATAG 59.873 44.000 0.50 0.00 39.65 1.73
3015 3059 5.021458 AGTCCTTTGGTTCGTAGGAATAGA 58.979 41.667 0.50 0.00 39.65 1.98
3016 3060 5.661759 AGTCCTTTGGTTCGTAGGAATAGAT 59.338 40.000 0.50 0.00 39.65 1.98
3017 3061 6.156429 AGTCCTTTGGTTCGTAGGAATAGATT 59.844 38.462 0.50 0.00 39.65 2.40
3018 3062 6.822170 GTCCTTTGGTTCGTAGGAATAGATTT 59.178 38.462 0.50 0.00 39.65 2.17
3019 3063 7.336176 GTCCTTTGGTTCGTAGGAATAGATTTT 59.664 37.037 0.50 0.00 39.65 1.82
3020 3064 7.886446 TCCTTTGGTTCGTAGGAATAGATTTTT 59.114 33.333 0.50 0.00 35.20 1.94
3021 3065 9.169592 CCTTTGGTTCGTAGGAATAGATTTTTA 57.830 33.333 0.50 0.00 34.05 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.185635 CCATTATGGTGTCTTTGGTTCATGT 59.814 40.000 2.48 0.00 31.35 3.21
1 2 5.653507 CCATTATGGTGTCTTTGGTTCATG 58.346 41.667 2.48 0.00 31.35 3.07
2 3 5.920193 CCATTATGGTGTCTTTGGTTCAT 57.080 39.130 2.48 0.00 31.35 2.57
16 17 5.010282 GGGCCAGTAAGATTACCATTATGG 58.990 45.833 10.08 10.08 45.02 2.74
17 18 5.707298 CAGGGCCAGTAAGATTACCATTATG 59.293 44.000 6.18 0.00 34.19 1.90
18 19 5.222130 CCAGGGCCAGTAAGATTACCATTAT 60.222 44.000 6.18 0.00 34.19 1.28
19 20 4.104102 CCAGGGCCAGTAAGATTACCATTA 59.896 45.833 6.18 0.00 34.19 1.90
20 21 3.117512 CCAGGGCCAGTAAGATTACCATT 60.118 47.826 6.18 0.00 34.19 3.16
21 22 2.443255 CCAGGGCCAGTAAGATTACCAT 59.557 50.000 6.18 0.00 34.19 3.55
22 23 1.843851 CCAGGGCCAGTAAGATTACCA 59.156 52.381 6.18 0.00 34.19 3.25
23 24 2.124411 TCCAGGGCCAGTAAGATTACC 58.876 52.381 6.18 0.00 34.19 2.85
24 25 2.504175 TGTCCAGGGCCAGTAAGATTAC 59.496 50.000 6.18 0.00 0.00 1.89
25 26 2.504175 GTGTCCAGGGCCAGTAAGATTA 59.496 50.000 6.18 0.00 0.00 1.75
26 27 1.282157 GTGTCCAGGGCCAGTAAGATT 59.718 52.381 6.18 0.00 0.00 2.40
27 28 0.912486 GTGTCCAGGGCCAGTAAGAT 59.088 55.000 6.18 0.00 0.00 2.40
28 29 0.472925 TGTGTCCAGGGCCAGTAAGA 60.473 55.000 6.18 0.00 0.00 2.10
29 30 0.036010 CTGTGTCCAGGGCCAGTAAG 60.036 60.000 6.18 0.00 34.90 2.34
30 31 0.472925 TCTGTGTCCAGGGCCAGTAA 60.473 55.000 6.18 0.00 39.31 2.24
31 32 0.472925 TTCTGTGTCCAGGGCCAGTA 60.473 55.000 6.18 0.00 39.31 2.74
32 33 1.136329 ATTCTGTGTCCAGGGCCAGT 61.136 55.000 6.18 0.00 39.31 4.00
33 34 0.679002 CATTCTGTGTCCAGGGCCAG 60.679 60.000 6.18 0.00 39.31 4.85
34 35 1.379916 CATTCTGTGTCCAGGGCCA 59.620 57.895 6.18 0.00 39.31 5.36
35 36 1.379044 CCATTCTGTGTCCAGGGCC 60.379 63.158 0.00 0.00 39.31 5.80
36 37 0.618458 TACCATTCTGTGTCCAGGGC 59.382 55.000 0.00 0.00 39.31 5.19
37 38 1.628340 TGTACCATTCTGTGTCCAGGG 59.372 52.381 0.00 0.00 39.31 4.45
38 39 2.038426 TGTGTACCATTCTGTGTCCAGG 59.962 50.000 0.00 0.00 39.31 4.45
39 40 3.401033 TGTGTACCATTCTGTGTCCAG 57.599 47.619 0.00 0.00 40.25 3.86
40 41 4.284746 TGTATGTGTACCATTCTGTGTCCA 59.715 41.667 2.73 0.00 34.86 4.02
41 42 4.827692 TGTATGTGTACCATTCTGTGTCC 58.172 43.478 2.73 0.00 34.86 4.02
42 43 6.795098 TTTGTATGTGTACCATTCTGTGTC 57.205 37.500 2.73 0.00 34.86 3.67
43 44 8.856153 TTATTTGTATGTGTACCATTCTGTGT 57.144 30.769 2.73 0.00 34.86 3.72
44 45 8.946085 ACTTATTTGTATGTGTACCATTCTGTG 58.054 33.333 2.73 0.00 34.86 3.66
45 46 9.515226 AACTTATTTGTATGTGTACCATTCTGT 57.485 29.630 2.73 0.00 34.86 3.41
100 101 9.196552 CGTCTATTAATCAATCACAAGCTGATA 57.803 33.333 0.00 0.00 38.82 2.15
101 102 7.928167 TCGTCTATTAATCAATCACAAGCTGAT 59.072 33.333 0.00 0.00 41.85 2.90
102 103 7.264947 TCGTCTATTAATCAATCACAAGCTGA 58.735 34.615 0.00 0.00 0.00 4.26
103 104 7.307042 CCTCGTCTATTAATCAATCACAAGCTG 60.307 40.741 0.00 0.00 0.00 4.24
104 105 6.703607 CCTCGTCTATTAATCAATCACAAGCT 59.296 38.462 0.00 0.00 0.00 3.74
105 106 6.073548 CCCTCGTCTATTAATCAATCACAAGC 60.074 42.308 0.00 0.00 0.00 4.01
106 107 7.210174 TCCCTCGTCTATTAATCAATCACAAG 58.790 38.462 0.00 0.00 0.00 3.16
107 108 7.119709 TCCCTCGTCTATTAATCAATCACAA 57.880 36.000 0.00 0.00 0.00 3.33
108 109 6.724893 TCCCTCGTCTATTAATCAATCACA 57.275 37.500 0.00 0.00 0.00 3.58
109 110 5.635700 GCTCCCTCGTCTATTAATCAATCAC 59.364 44.000 0.00 0.00 0.00 3.06
110 111 5.279506 GGCTCCCTCGTCTATTAATCAATCA 60.280 44.000 0.00 0.00 0.00 2.57
111 112 5.172205 GGCTCCCTCGTCTATTAATCAATC 58.828 45.833 0.00 0.00 0.00 2.67
112 113 4.322049 CGGCTCCCTCGTCTATTAATCAAT 60.322 45.833 0.00 0.00 0.00 2.57
113 114 3.005472 CGGCTCCCTCGTCTATTAATCAA 59.995 47.826 0.00 0.00 0.00 2.57
114 115 2.557056 CGGCTCCCTCGTCTATTAATCA 59.443 50.000 0.00 0.00 0.00 2.57
115 116 2.094649 CCGGCTCCCTCGTCTATTAATC 60.095 54.545 0.00 0.00 0.00 1.75
116 117 1.893801 CCGGCTCCCTCGTCTATTAAT 59.106 52.381 0.00 0.00 0.00 1.40
117 118 1.325355 CCGGCTCCCTCGTCTATTAA 58.675 55.000 0.00 0.00 0.00 1.40
118 119 1.177256 GCCGGCTCCCTCGTCTATTA 61.177 60.000 22.15 0.00 0.00 0.98
119 120 2.499827 GCCGGCTCCCTCGTCTATT 61.500 63.158 22.15 0.00 0.00 1.73
120 121 2.913060 GCCGGCTCCCTCGTCTAT 60.913 66.667 22.15 0.00 0.00 1.98
528 529 3.512724 AGCTTGCATTTGCCAACTAATCT 59.487 39.130 0.00 0.00 41.18 2.40
529 530 3.853475 AGCTTGCATTTGCCAACTAATC 58.147 40.909 0.00 0.00 41.18 1.75
530 531 3.967332 AGCTTGCATTTGCCAACTAAT 57.033 38.095 0.00 0.00 41.18 1.73
574 575 1.401905 CTATTGGCGCAAAGAGGAACC 59.598 52.381 11.45 0.00 0.00 3.62
582 583 3.328382 ACTGTACTCTATTGGCGCAAA 57.672 42.857 10.83 3.91 0.00 3.68
583 584 3.193903 TGTACTGTACTCTATTGGCGCAA 59.806 43.478 17.98 0.00 0.00 4.85
607 608 0.958822 AAACATGCCCCGAGTGTTTC 59.041 50.000 0.00 0.00 40.87 2.78
608 609 0.673437 CAAACATGCCCCGAGTGTTT 59.327 50.000 0.00 0.00 44.35 2.83
609 610 0.467290 ACAAACATGCCCCGAGTGTT 60.467 50.000 0.00 0.00 37.66 3.32
610 611 1.150536 ACAAACATGCCCCGAGTGT 59.849 52.632 0.00 0.00 0.00 3.55
611 612 0.888736 TCACAAACATGCCCCGAGTG 60.889 55.000 0.00 0.00 0.00 3.51
612 613 0.038166 ATCACAAACATGCCCCGAGT 59.962 50.000 0.00 0.00 0.00 4.18
613 614 1.135315 CAATCACAAACATGCCCCGAG 60.135 52.381 0.00 0.00 0.00 4.63
614 615 0.887247 CAATCACAAACATGCCCCGA 59.113 50.000 0.00 0.00 0.00 5.14
615 616 0.108709 CCAATCACAAACATGCCCCG 60.109 55.000 0.00 0.00 0.00 5.73
616 617 0.975887 ACCAATCACAAACATGCCCC 59.024 50.000 0.00 0.00 0.00 5.80
617 618 1.066929 GGACCAATCACAAACATGCCC 60.067 52.381 0.00 0.00 0.00 5.36
618 619 1.895131 AGGACCAATCACAAACATGCC 59.105 47.619 0.00 0.00 0.00 4.40
619 620 3.665745 AAGGACCAATCACAAACATGC 57.334 42.857 0.00 0.00 0.00 4.06
620 621 6.573664 TCTAAAGGACCAATCACAAACATG 57.426 37.500 0.00 0.00 0.00 3.21
621 622 6.947733 TCATCTAAAGGACCAATCACAAACAT 59.052 34.615 0.00 0.00 0.00 2.71
622 623 6.303054 TCATCTAAAGGACCAATCACAAACA 58.697 36.000 0.00 0.00 0.00 2.83
623 624 6.817765 TCATCTAAAGGACCAATCACAAAC 57.182 37.500 0.00 0.00 0.00 2.93
624 625 7.831691 TTTCATCTAAAGGACCAATCACAAA 57.168 32.000 0.00 0.00 0.00 2.83
625 626 7.831691 TTTTCATCTAAAGGACCAATCACAA 57.168 32.000 0.00 0.00 0.00 3.33
626 627 7.505585 ACTTTTTCATCTAAAGGACCAATCACA 59.494 33.333 0.00 0.00 37.01 3.58
627 628 7.886338 ACTTTTTCATCTAAAGGACCAATCAC 58.114 34.615 0.00 0.00 37.01 3.06
628 629 7.944554 AGACTTTTTCATCTAAAGGACCAATCA 59.055 33.333 0.00 0.00 37.01 2.57
629 630 8.239998 CAGACTTTTTCATCTAAAGGACCAATC 58.760 37.037 0.00 0.00 37.01 2.67
630 631 7.725844 ACAGACTTTTTCATCTAAAGGACCAAT 59.274 33.333 0.00 0.00 37.01 3.16
631 632 7.060421 ACAGACTTTTTCATCTAAAGGACCAA 58.940 34.615 0.00 0.00 37.01 3.67
632 633 6.601332 ACAGACTTTTTCATCTAAAGGACCA 58.399 36.000 0.00 0.00 37.01 4.02
633 634 8.617290 TTACAGACTTTTTCATCTAAAGGACC 57.383 34.615 0.00 0.00 37.01 4.46
667 668 9.389570 GCAGAAATACTAAACGTACAAACAATT 57.610 29.630 0.00 0.00 0.00 2.32
668 669 8.019094 GGCAGAAATACTAAACGTACAAACAAT 58.981 33.333 0.00 0.00 0.00 2.71
669 670 7.227116 AGGCAGAAATACTAAACGTACAAACAA 59.773 33.333 0.00 0.00 0.00 2.83
670 671 6.707161 AGGCAGAAATACTAAACGTACAAACA 59.293 34.615 0.00 0.00 0.00 2.83
671 672 7.125536 AGGCAGAAATACTAAACGTACAAAC 57.874 36.000 0.00 0.00 0.00 2.93
672 673 7.308109 CCAAGGCAGAAATACTAAACGTACAAA 60.308 37.037 0.00 0.00 0.00 2.83
673 674 6.148150 CCAAGGCAGAAATACTAAACGTACAA 59.852 38.462 0.00 0.00 0.00 2.41
674 675 5.640357 CCAAGGCAGAAATACTAAACGTACA 59.360 40.000 0.00 0.00 0.00 2.90
675 676 5.870978 TCCAAGGCAGAAATACTAAACGTAC 59.129 40.000 0.00 0.00 0.00 3.67
676 677 5.870978 GTCCAAGGCAGAAATACTAAACGTA 59.129 40.000 0.00 0.00 0.00 3.57
677 678 4.694037 GTCCAAGGCAGAAATACTAAACGT 59.306 41.667 0.00 0.00 0.00 3.99
678 679 4.201685 CGTCCAAGGCAGAAATACTAAACG 60.202 45.833 0.00 0.00 0.00 3.60
679 680 4.694037 ACGTCCAAGGCAGAAATACTAAAC 59.306 41.667 0.00 0.00 0.00 2.01
680 681 4.901868 ACGTCCAAGGCAGAAATACTAAA 58.098 39.130 0.00 0.00 0.00 1.85
681 682 4.546829 ACGTCCAAGGCAGAAATACTAA 57.453 40.909 0.00 0.00 0.00 2.24
682 683 5.664294 TTACGTCCAAGGCAGAAATACTA 57.336 39.130 0.00 0.00 0.00 1.82
683 684 4.546829 TTACGTCCAAGGCAGAAATACT 57.453 40.909 0.00 0.00 0.00 2.12
684 685 4.873827 TGATTACGTCCAAGGCAGAAATAC 59.126 41.667 0.00 0.00 0.00 1.89
685 686 5.092554 TGATTACGTCCAAGGCAGAAATA 57.907 39.130 0.00 0.00 0.00 1.40
686 687 3.941483 CTGATTACGTCCAAGGCAGAAAT 59.059 43.478 0.00 0.00 0.00 2.17
687 688 3.334691 CTGATTACGTCCAAGGCAGAAA 58.665 45.455 0.00 0.00 0.00 2.52
688 689 2.935238 GCTGATTACGTCCAAGGCAGAA 60.935 50.000 0.00 0.00 0.00 3.02
689 690 1.405526 GCTGATTACGTCCAAGGCAGA 60.406 52.381 0.00 0.00 0.00 4.26
690 691 1.009829 GCTGATTACGTCCAAGGCAG 58.990 55.000 0.00 0.00 0.00 4.85
691 692 0.323302 TGCTGATTACGTCCAAGGCA 59.677 50.000 0.00 0.00 0.00 4.75
692 693 1.448985 TTGCTGATTACGTCCAAGGC 58.551 50.000 0.00 0.00 0.00 4.35
693 694 3.731867 GCATTTGCTGATTACGTCCAAGG 60.732 47.826 0.00 0.00 38.21 3.61
694 695 3.119884 TGCATTTGCTGATTACGTCCAAG 60.120 43.478 3.94 0.00 42.66 3.61
695 696 2.816672 TGCATTTGCTGATTACGTCCAA 59.183 40.909 3.94 0.00 42.66 3.53
696 697 2.161410 GTGCATTTGCTGATTACGTCCA 59.839 45.455 3.94 0.00 42.66 4.02
697 698 2.161410 TGTGCATTTGCTGATTACGTCC 59.839 45.455 3.94 0.00 42.66 4.79
698 699 3.469899 TGTGCATTTGCTGATTACGTC 57.530 42.857 3.94 0.00 42.66 4.34
699 700 3.004210 TGTTGTGCATTTGCTGATTACGT 59.996 39.130 3.94 0.00 42.66 3.57
700 701 3.563508 TGTTGTGCATTTGCTGATTACG 58.436 40.909 3.94 0.00 42.66 3.18
701 702 5.669357 GCATTGTTGTGCATTTGCTGATTAC 60.669 40.000 3.94 0.00 44.43 1.89
702 703 4.389382 GCATTGTTGTGCATTTGCTGATTA 59.611 37.500 3.94 0.00 44.43 1.75
703 704 3.187637 GCATTGTTGTGCATTTGCTGATT 59.812 39.130 3.94 0.00 44.43 2.57
704 705 2.739913 GCATTGTTGTGCATTTGCTGAT 59.260 40.909 3.94 0.00 44.43 2.90
705 706 2.136728 GCATTGTTGTGCATTTGCTGA 58.863 42.857 3.94 0.00 44.43 4.26
706 707 2.587612 GCATTGTTGTGCATTTGCTG 57.412 45.000 3.94 0.00 44.43 4.41
714 715 2.638074 CGTGCGTGCATTGTTGTGC 61.638 57.895 0.00 0.00 45.25 4.57
715 716 2.010286 CCGTGCGTGCATTGTTGTG 61.010 57.895 0.00 0.00 0.00 3.33
716 717 1.514678 ATCCGTGCGTGCATTGTTGT 61.515 50.000 0.00 0.00 0.00 3.32
717 718 0.445829 TATCCGTGCGTGCATTGTTG 59.554 50.000 0.00 0.00 0.00 3.33
718 719 0.726827 CTATCCGTGCGTGCATTGTT 59.273 50.000 0.00 0.00 0.00 2.83
719 720 0.391130 ACTATCCGTGCGTGCATTGT 60.391 50.000 0.00 0.00 0.00 2.71
720 721 0.726827 AACTATCCGTGCGTGCATTG 59.273 50.000 0.00 0.00 0.00 2.82
721 722 1.448985 AAACTATCCGTGCGTGCATT 58.551 45.000 0.00 0.00 0.00 3.56
722 723 1.448985 AAAACTATCCGTGCGTGCAT 58.551 45.000 0.00 0.00 0.00 3.96
723 724 1.231221 AAAAACTATCCGTGCGTGCA 58.769 45.000 0.00 0.00 0.00 4.57
739 740 6.993902 AGACCAGACCGTAAATTCTGTAAAAA 59.006 34.615 0.00 0.00 38.06 1.94
740 741 6.527423 AGACCAGACCGTAAATTCTGTAAAA 58.473 36.000 0.00 0.00 38.06 1.52
741 742 6.105397 AGACCAGACCGTAAATTCTGTAAA 57.895 37.500 0.00 0.00 38.06 2.01
742 743 5.733620 AGACCAGACCGTAAATTCTGTAA 57.266 39.130 0.00 0.00 38.06 2.41
743 744 5.163581 GCTAGACCAGACCGTAAATTCTGTA 60.164 44.000 0.00 0.00 38.06 2.74
744 745 4.381718 GCTAGACCAGACCGTAAATTCTGT 60.382 45.833 0.00 0.00 38.06 3.41
745 746 4.113354 GCTAGACCAGACCGTAAATTCTG 58.887 47.826 0.00 0.00 39.25 3.02
746 747 4.024670 AGCTAGACCAGACCGTAAATTCT 58.975 43.478 0.00 0.00 0.00 2.40
747 748 4.113354 CAGCTAGACCAGACCGTAAATTC 58.887 47.826 0.00 0.00 0.00 2.17
748 749 3.118738 CCAGCTAGACCAGACCGTAAATT 60.119 47.826 0.00 0.00 0.00 1.82
749 750 2.431057 CCAGCTAGACCAGACCGTAAAT 59.569 50.000 0.00 0.00 0.00 1.40
750 751 1.822990 CCAGCTAGACCAGACCGTAAA 59.177 52.381 0.00 0.00 0.00 2.01
751 752 1.471119 CCAGCTAGACCAGACCGTAA 58.529 55.000 0.00 0.00 0.00 3.18
752 753 1.035932 GCCAGCTAGACCAGACCGTA 61.036 60.000 0.00 0.00 0.00 4.02
753 754 2.352032 GCCAGCTAGACCAGACCGT 61.352 63.158 0.00 0.00 0.00 4.83
754 755 2.290122 CTGCCAGCTAGACCAGACCG 62.290 65.000 0.00 0.00 0.00 4.79
755 756 1.519719 CTGCCAGCTAGACCAGACC 59.480 63.158 0.00 0.00 0.00 3.85
756 757 1.261238 ACCTGCCAGCTAGACCAGAC 61.261 60.000 0.00 0.00 0.00 3.51
757 758 0.545309 AACCTGCCAGCTAGACCAGA 60.545 55.000 0.00 0.00 0.00 3.86
758 759 0.326264 AAACCTGCCAGCTAGACCAG 59.674 55.000 0.00 0.00 0.00 4.00
759 760 0.771127 AAAACCTGCCAGCTAGACCA 59.229 50.000 0.00 0.00 0.00 4.02
760 761 1.271379 TGAAAACCTGCCAGCTAGACC 60.271 52.381 0.00 0.00 0.00 3.85
761 762 2.185004 TGAAAACCTGCCAGCTAGAC 57.815 50.000 0.00 0.00 0.00 2.59
762 763 3.084039 CAATGAAAACCTGCCAGCTAGA 58.916 45.455 0.00 0.00 0.00 2.43
763 764 2.165030 CCAATGAAAACCTGCCAGCTAG 59.835 50.000 0.00 0.00 0.00 3.42
764 765 2.170166 CCAATGAAAACCTGCCAGCTA 58.830 47.619 0.00 0.00 0.00 3.32
765 766 0.971386 CCAATGAAAACCTGCCAGCT 59.029 50.000 0.00 0.00 0.00 4.24
766 767 0.968405 TCCAATGAAAACCTGCCAGC 59.032 50.000 0.00 0.00 0.00 4.85
767 768 4.272489 TCTATCCAATGAAAACCTGCCAG 58.728 43.478 0.00 0.00 0.00 4.85
768 769 4.314522 TCTATCCAATGAAAACCTGCCA 57.685 40.909 0.00 0.00 0.00 4.92
769 770 5.659440 TTTCTATCCAATGAAAACCTGCC 57.341 39.130 0.00 0.00 30.41 4.85
770 771 7.922811 CCTTATTTCTATCCAATGAAAACCTGC 59.077 37.037 0.00 0.00 36.06 4.85
771 772 8.971073 ACCTTATTTCTATCCAATGAAAACCTG 58.029 33.333 0.00 0.00 36.06 4.00
772 773 8.971073 CACCTTATTTCTATCCAATGAAAACCT 58.029 33.333 0.00 0.00 36.06 3.50
773 774 8.966868 TCACCTTATTTCTATCCAATGAAAACC 58.033 33.333 0.00 0.00 36.06 3.27
775 776 9.189156 CCTCACCTTATTTCTATCCAATGAAAA 57.811 33.333 0.00 0.00 36.06 2.29
776 777 7.779798 CCCTCACCTTATTTCTATCCAATGAAA 59.220 37.037 0.00 0.00 36.74 2.69
777 778 7.128728 TCCCTCACCTTATTTCTATCCAATGAA 59.871 37.037 0.00 0.00 0.00 2.57
778 779 6.619437 TCCCTCACCTTATTTCTATCCAATGA 59.381 38.462 0.00 0.00 0.00 2.57
779 780 6.841601 TCCCTCACCTTATTTCTATCCAATG 58.158 40.000 0.00 0.00 0.00 2.82
780 781 6.851836 TCTCCCTCACCTTATTTCTATCCAAT 59.148 38.462 0.00 0.00 0.00 3.16
781 782 6.209774 TCTCCCTCACCTTATTTCTATCCAA 58.790 40.000 0.00 0.00 0.00 3.53
782 783 5.788430 TCTCCCTCACCTTATTTCTATCCA 58.212 41.667 0.00 0.00 0.00 3.41
783 784 6.078664 TCTCTCCCTCACCTTATTTCTATCC 58.921 44.000 0.00 0.00 0.00 2.59
784 785 7.507616 TCTTCTCTCCCTCACCTTATTTCTATC 59.492 40.741 0.00 0.00 0.00 2.08
785 786 7.366226 TCTTCTCTCCCTCACCTTATTTCTAT 58.634 38.462 0.00 0.00 0.00 1.98
786 787 6.742756 TCTTCTCTCCCTCACCTTATTTCTA 58.257 40.000 0.00 0.00 0.00 2.10
787 788 5.594777 TCTTCTCTCCCTCACCTTATTTCT 58.405 41.667 0.00 0.00 0.00 2.52
788 789 5.941555 TCTTCTCTCCCTCACCTTATTTC 57.058 43.478 0.00 0.00 0.00 2.17
789 790 6.899892 AATCTTCTCTCCCTCACCTTATTT 57.100 37.500 0.00 0.00 0.00 1.40
790 791 6.556874 CCTAATCTTCTCTCCCTCACCTTATT 59.443 42.308 0.00 0.00 0.00 1.40
791 792 6.081356 CCTAATCTTCTCTCCCTCACCTTAT 58.919 44.000 0.00 0.00 0.00 1.73
792 793 5.043281 ACCTAATCTTCTCTCCCTCACCTTA 60.043 44.000 0.00 0.00 0.00 2.69
793 794 4.265078 ACCTAATCTTCTCTCCCTCACCTT 60.265 45.833 0.00 0.00 0.00 3.50
794 795 3.273618 ACCTAATCTTCTCTCCCTCACCT 59.726 47.826 0.00 0.00 0.00 4.00
795 796 3.386402 CACCTAATCTTCTCTCCCTCACC 59.614 52.174 0.00 0.00 0.00 4.02
796 797 3.386402 CCACCTAATCTTCTCTCCCTCAC 59.614 52.174 0.00 0.00 0.00 3.51
797 798 3.631087 CCCACCTAATCTTCTCTCCCTCA 60.631 52.174 0.00 0.00 0.00 3.86
798 799 2.969262 CCCACCTAATCTTCTCTCCCTC 59.031 54.545 0.00 0.00 0.00 4.30
799 800 2.961977 GCCCACCTAATCTTCTCTCCCT 60.962 54.545 0.00 0.00 0.00 4.20
800 801 1.418264 GCCCACCTAATCTTCTCTCCC 59.582 57.143 0.00 0.00 0.00 4.30
801 802 2.119495 TGCCCACCTAATCTTCTCTCC 58.881 52.381 0.00 0.00 0.00 3.71
802 803 3.452627 TCTTGCCCACCTAATCTTCTCTC 59.547 47.826 0.00 0.00 0.00 3.20
803 804 3.198853 GTCTTGCCCACCTAATCTTCTCT 59.801 47.826 0.00 0.00 0.00 3.10
804 805 3.536570 GTCTTGCCCACCTAATCTTCTC 58.463 50.000 0.00 0.00 0.00 2.87
805 806 2.239907 GGTCTTGCCCACCTAATCTTCT 59.760 50.000 0.00 0.00 0.00 2.85
806 807 2.644676 GGTCTTGCCCACCTAATCTTC 58.355 52.381 0.00 0.00 0.00 2.87
807 808 2.808906 GGTCTTGCCCACCTAATCTT 57.191 50.000 0.00 0.00 0.00 2.40
818 819 2.173569 ACTAATCTGATGGGGTCTTGCC 59.826 50.000 0.00 0.00 0.00 4.52
819 820 3.567478 ACTAATCTGATGGGGTCTTGC 57.433 47.619 0.00 0.00 0.00 4.01
820 821 4.202441 CCAACTAATCTGATGGGGTCTTG 58.798 47.826 0.00 0.00 0.00 3.02
821 822 3.372025 GCCAACTAATCTGATGGGGTCTT 60.372 47.826 0.00 0.00 33.45 3.01
822 823 2.173569 GCCAACTAATCTGATGGGGTCT 59.826 50.000 0.00 0.00 33.45 3.85
823 824 2.092429 TGCCAACTAATCTGATGGGGTC 60.092 50.000 0.00 0.00 33.45 4.46
824 825 1.922447 TGCCAACTAATCTGATGGGGT 59.078 47.619 0.00 0.00 33.45 4.95
825 826 2.734755 TGCCAACTAATCTGATGGGG 57.265 50.000 0.00 0.00 33.45 4.96
826 827 4.738541 GCATTTGCCAACTAATCTGATGGG 60.739 45.833 0.00 0.00 33.45 4.00
827 828 4.142116 TGCATTTGCCAACTAATCTGATGG 60.142 41.667 0.00 0.00 41.18 3.51
828 829 5.001237 TGCATTTGCCAACTAATCTGATG 57.999 39.130 0.00 0.00 41.18 3.07
829 830 5.657474 CTTGCATTTGCCAACTAATCTGAT 58.343 37.500 0.00 0.00 41.18 2.90
830 831 4.618927 GCTTGCATTTGCCAACTAATCTGA 60.619 41.667 0.00 0.00 41.18 3.27
831 832 3.615496 GCTTGCATTTGCCAACTAATCTG 59.385 43.478 0.00 0.00 41.18 2.90
832 833 3.512724 AGCTTGCATTTGCCAACTAATCT 59.487 39.130 0.00 0.00 41.18 2.40
833 834 3.853475 AGCTTGCATTTGCCAACTAATC 58.147 40.909 0.00 0.00 41.18 1.75
834 835 3.967332 AGCTTGCATTTGCCAACTAAT 57.033 38.095 0.00 0.00 41.18 1.73
835 836 3.069300 TCAAGCTTGCATTTGCCAACTAA 59.931 39.130 21.99 0.00 41.18 2.24
836 837 2.627221 TCAAGCTTGCATTTGCCAACTA 59.373 40.909 21.99 0.00 41.18 2.24
837 838 1.413445 TCAAGCTTGCATTTGCCAACT 59.587 42.857 21.99 0.00 41.18 3.16
838 839 1.528161 GTCAAGCTTGCATTTGCCAAC 59.472 47.619 21.99 7.44 41.18 3.77
839 840 1.138464 TGTCAAGCTTGCATTTGCCAA 59.862 42.857 21.99 0.00 41.18 4.52
840 841 0.751452 TGTCAAGCTTGCATTTGCCA 59.249 45.000 21.99 6.27 41.18 4.92
841 842 1.142474 GTGTCAAGCTTGCATTTGCC 58.858 50.000 21.99 7.04 41.18 4.52
864 865 2.416893 GAGGAACCGAACAATCTCAAGC 59.583 50.000 0.00 0.00 0.00 4.01
878 879 0.393808 TATTGGCGCAAGGAGGAACC 60.394 55.000 10.83 0.00 39.35 3.62
886 887 2.893637 ACTGTACTCTATTGGCGCAAG 58.106 47.619 10.83 0.20 43.44 4.01
887 888 4.665833 ATACTGTACTCTATTGGCGCAA 57.334 40.909 10.83 0.00 0.00 4.85
926 938 1.205179 TGGCGATAAGGTTTACGAGCA 59.795 47.619 0.00 0.00 0.00 4.26
943 955 1.179174 GGTCCTTGGAGTTTGGTGGC 61.179 60.000 0.00 0.00 0.00 5.01
951 963 2.750350 CCGCTTGGTCCTTGGAGT 59.250 61.111 0.00 0.00 0.00 3.85
952 964 2.747855 GCCGCTTGGTCCTTGGAG 60.748 66.667 0.00 0.00 34.16 3.86
953 965 3.565214 TGCCGCTTGGTCCTTGGA 61.565 61.111 0.00 0.00 34.16 3.53
954 966 3.365265 GTGCCGCTTGGTCCTTGG 61.365 66.667 0.00 0.00 34.16 3.61
955 967 3.365265 GGTGCCGCTTGGTCCTTG 61.365 66.667 0.00 0.00 34.16 3.61
956 968 4.660938 GGGTGCCGCTTGGTCCTT 62.661 66.667 0.00 0.00 34.16 3.36
992 1004 1.875813 GACGACGCCATCTCTGCAG 60.876 63.158 7.63 7.63 0.00 4.41
993 1005 2.181777 GACGACGCCATCTCTGCA 59.818 61.111 0.00 0.00 0.00 4.41
994 1006 2.951745 CGACGACGCCATCTCTGC 60.952 66.667 0.00 0.00 0.00 4.26
1207 1222 4.803426 GACGCGGAGGTGGCTGAG 62.803 72.222 12.47 0.00 0.00 3.35
1260 1275 4.031129 ACTGGCAGCTGGCTCTGG 62.031 66.667 36.39 25.15 44.01 3.86
1261 1276 2.746671 CACTGGCAGCTGGCTCTG 60.747 66.667 36.39 26.83 44.01 3.35
1262 1277 4.031129 CCACTGGCAGCTGGCTCT 62.031 66.667 36.39 20.90 44.01 4.09
1263 1278 3.857309 AACCACTGGCAGCTGGCTC 62.857 63.158 36.39 11.48 44.01 4.70
1936 1954 3.003173 CCTCTGGCTGTCCGGGAA 61.003 66.667 0.00 0.00 39.31 3.97
2097 2121 4.691216 AGCTCGAAGAATCAACACTTTACC 59.309 41.667 0.00 0.00 34.09 2.85
2099 2123 5.177511 CACAGCTCGAAGAATCAACACTTTA 59.822 40.000 0.00 0.00 34.09 1.85
2100 2124 4.024556 CACAGCTCGAAGAATCAACACTTT 60.025 41.667 0.00 0.00 34.09 2.66
2125 2149 0.529119 AAGTTCCGTCGTCACACACC 60.529 55.000 0.00 0.00 0.00 4.16
2160 2190 2.610833 CCGGACATGTTCATCATCAGTG 59.389 50.000 4.68 0.00 34.09 3.66
2164 2194 2.614057 GGAACCGGACATGTTCATCATC 59.386 50.000 9.46 0.00 43.05 2.92
2169 2199 2.028476 CACTAGGAACCGGACATGTTCA 60.028 50.000 9.46 0.00 43.05 3.18
2177 2207 2.496070 CAATCAGTCACTAGGAACCGGA 59.504 50.000 9.46 0.00 0.00 5.14
2179 2209 2.271800 GCAATCAGTCACTAGGAACCG 58.728 52.381 0.00 0.00 0.00 4.44
2186 2216 2.162319 TGCAACGCAATCAGTCACTA 57.838 45.000 0.00 0.00 34.76 2.74
2191 2229 1.213537 GCCATGCAACGCAATCAGT 59.786 52.632 0.00 0.00 43.62 3.41
2200 2238 2.050168 CACACCGTGCCATGCAAC 60.050 61.111 0.00 0.00 41.47 4.17
2250 2288 3.250040 CGTCCACTCGAATTTCCTGTTTT 59.750 43.478 0.00 0.00 0.00 2.43
2258 2296 0.517316 GCTTGCGTCCACTCGAATTT 59.483 50.000 0.00 0.00 0.00 1.82
2262 2300 3.891586 GACGCTTGCGTCCACTCGA 62.892 63.158 30.39 0.00 33.21 4.04
2263 2301 3.470567 GACGCTTGCGTCCACTCG 61.471 66.667 30.39 0.00 33.21 4.18
2264 2302 3.470567 CGACGCTTGCGTCCACTC 61.471 66.667 32.78 15.73 35.67 3.51
2265 2303 3.973516 TCGACGCTTGCGTCCACT 61.974 61.111 32.78 8.49 35.67 4.00
2266 2304 3.764049 GTCGACGCTTGCGTCCAC 61.764 66.667 32.78 28.59 35.67 4.02
2333 2371 1.138036 TGACAGGAACGCCGATACG 59.862 57.895 0.00 0.00 39.96 3.06
2334 2372 1.138047 CGTGACAGGAACGCCGATAC 61.138 60.000 0.00 0.00 39.96 2.24
2335 2373 1.138036 CGTGACAGGAACGCCGATA 59.862 57.895 0.00 0.00 39.96 2.92
2336 2374 2.126071 CGTGACAGGAACGCCGAT 60.126 61.111 0.00 0.00 39.96 4.18
2337 2375 4.351938 CCGTGACAGGAACGCCGA 62.352 66.667 0.00 0.00 39.69 5.54
2362 2400 3.959991 GAACCTCTCGTGCCTGGCC 62.960 68.421 17.53 6.66 0.00 5.36
2400 2439 2.984466 CGTCGTCGCACCATTACG 59.016 61.111 0.00 0.00 37.96 3.18
2502 2541 5.404968 GTCATTCTCTTCAGATATTCCAGCG 59.595 44.000 0.00 0.00 0.00 5.18
2541 2580 2.359230 GCTCCGGCTGGATATGCC 60.359 66.667 16.52 0.00 45.33 4.40
2542 2581 0.607489 AATGCTCCGGCTGGATATGC 60.607 55.000 16.52 16.02 45.33 3.14
2746 2786 3.349927 TCCTGAATGCCTGACAATGAAG 58.650 45.455 0.00 0.00 0.00 3.02
2812 2852 3.870419 GCCACTTAGCAGAGATCTTTCTG 59.130 47.826 7.45 7.45 45.85 3.02
2818 2858 2.167281 TGACAGCCACTTAGCAGAGATC 59.833 50.000 0.00 0.00 34.23 2.75
2850 2890 1.443407 GCAAGCTGCTATCTCCCGA 59.557 57.895 0.90 0.00 40.96 5.14
2924 2968 7.398904 CCTATAAAATTCCTCCAAACCAAAGGA 59.601 37.037 0.00 0.00 37.42 3.36
2925 2969 7.398904 TCCTATAAAATTCCTCCAAACCAAAGG 59.601 37.037 0.00 0.00 0.00 3.11
2926 2970 8.361169 TCCTATAAAATTCCTCCAAACCAAAG 57.639 34.615 0.00 0.00 0.00 2.77
2927 2971 8.728596 TTCCTATAAAATTCCTCCAAACCAAA 57.271 30.769 0.00 0.00 0.00 3.28
2928 2972 8.909423 ATTCCTATAAAATTCCTCCAAACCAA 57.091 30.769 0.00 0.00 0.00 3.67
2929 2973 8.909423 AATTCCTATAAAATTCCTCCAAACCA 57.091 30.769 0.00 0.00 0.00 3.67
2980 3024 6.538945 AACCAAAGGACTCTAAAGCAAAAA 57.461 33.333 0.00 0.00 0.00 1.94
2981 3025 5.220970 CGAACCAAAGGACTCTAAAGCAAAA 60.221 40.000 0.00 0.00 0.00 2.44
2982 3026 4.274950 CGAACCAAAGGACTCTAAAGCAAA 59.725 41.667 0.00 0.00 0.00 3.68
2983 3027 3.813166 CGAACCAAAGGACTCTAAAGCAA 59.187 43.478 0.00 0.00 0.00 3.91
2984 3028 3.181458 ACGAACCAAAGGACTCTAAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
2985 3029 3.400255 ACGAACCAAAGGACTCTAAAGC 58.600 45.455 0.00 0.00 0.00 3.51
2986 3030 5.047519 TCCTACGAACCAAAGGACTCTAAAG 60.048 44.000 0.00 0.00 34.46 1.85
2987 3031 4.834496 TCCTACGAACCAAAGGACTCTAAA 59.166 41.667 0.00 0.00 34.46 1.85
2988 3032 4.410099 TCCTACGAACCAAAGGACTCTAA 58.590 43.478 0.00 0.00 34.46 2.10
2989 3033 4.038271 TCCTACGAACCAAAGGACTCTA 57.962 45.455 0.00 0.00 34.46 2.43
2990 3034 2.885616 TCCTACGAACCAAAGGACTCT 58.114 47.619 0.00 0.00 34.46 3.24
2991 3035 3.672767 TTCCTACGAACCAAAGGACTC 57.327 47.619 0.00 0.00 39.13 3.36
2992 3036 5.021458 TCTATTCCTACGAACCAAAGGACT 58.979 41.667 0.00 0.00 39.13 3.85
2993 3037 5.334724 TCTATTCCTACGAACCAAAGGAC 57.665 43.478 0.00 0.00 39.13 3.85
2994 3038 6.555463 AATCTATTCCTACGAACCAAAGGA 57.445 37.500 0.00 0.00 37.64 3.36
2995 3039 7.625828 AAAATCTATTCCTACGAACCAAAGG 57.374 36.000 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.