Multiple sequence alignment - TraesCS2A01G172800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G172800 chr2A 100.000 2707 0 0 1 2707 130066349 130063643 0 5000
1 TraesCS2A01G172800 chr3A 96.292 2319 65 10 1 2319 706202317 706204614 0 3786
2 TraesCS2A01G172800 chr5A 95.177 2343 81 12 1 2320 168957346 168959679 0 3672
3 TraesCS2A01G172800 chr6A 94.492 2342 80 8 1 2320 276499068 276501382 0 3565
4 TraesCS2A01G172800 chr1A 96.369 1873 64 4 447 2319 347418689 347416821 0 3079
5 TraesCS2A01G172800 chr1D 96.463 1555 54 1 1 1555 487307373 487305820 0 2566
6 TraesCS2A01G172800 chr1D 95.884 1555 60 3 1 1555 30698304 30696754 0 2514
7 TraesCS2A01G172800 chr1D 95.052 768 33 2 1553 2320 30696721 30695959 0 1203
8 TraesCS2A01G172800 chr1D 97.423 388 10 0 2320 2707 355579226 355579613 0 662
9 TraesCS2A01G172800 chr1D 97.165 388 11 0 2320 2707 68869523 68869136 0 656
10 TraesCS2A01G172800 chr1D 97.165 388 11 0 2320 2707 87013012 87013399 0 656
11 TraesCS2A01G172800 chr1D 96.907 388 12 0 2320 2707 455294972 455294585 0 651
12 TraesCS2A01G172800 chr3D 96.206 1555 58 1 1 1555 465175692 465177245 0 2543
13 TraesCS2A01G172800 chr3D 96.206 1555 57 1 1 1555 516403663 516402111 0 2543
14 TraesCS2A01G172800 chr3D 95.567 767 31 1 1553 2319 516402078 516401315 0 1225
15 TraesCS2A01G172800 chr3D 94.668 769 37 2 1553 2321 465177278 465178042 0 1190
16 TraesCS2A01G172800 chr3D 97.187 391 10 1 2317 2707 350410835 350410446 0 660
17 TraesCS2A01G172800 chr2B 95.376 1557 68 4 1 1555 431357 432911 0 2473
18 TraesCS2A01G172800 chr2B 94.785 767 37 1 1553 2319 432944 433707 0 1192
19 TraesCS2A01G172800 chr7A 95.109 1554 73 2 1 1554 303752225 303750675 0 2446
20 TraesCS2A01G172800 chr7A 95.437 767 32 1 1553 2319 303750641 303749878 0 1219
21 TraesCS2A01G172800 chr5D 98.196 388 7 0 2320 2707 91307992 91307605 0 678
22 TraesCS2A01G172800 chr5D 96.907 388 12 0 2320 2707 274319361 274318974 0 651
23 TraesCS2A01G172800 chr5D 96.907 388 12 0 2320 2707 403929333 403928946 0 651
24 TraesCS2A01G172800 chr6D 96.907 388 12 0 2320 2707 353694451 353694838 0 651


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G172800 chr2A 130063643 130066349 2706 True 5000.0 5000 100.0000 1 2707 1 chr2A.!!$R1 2706
1 TraesCS2A01G172800 chr3A 706202317 706204614 2297 False 3786.0 3786 96.2920 1 2319 1 chr3A.!!$F1 2318
2 TraesCS2A01G172800 chr5A 168957346 168959679 2333 False 3672.0 3672 95.1770 1 2320 1 chr5A.!!$F1 2319
3 TraesCS2A01G172800 chr6A 276499068 276501382 2314 False 3565.0 3565 94.4920 1 2320 1 chr6A.!!$F1 2319
4 TraesCS2A01G172800 chr1A 347416821 347418689 1868 True 3079.0 3079 96.3690 447 2319 1 chr1A.!!$R1 1872
5 TraesCS2A01G172800 chr1D 487305820 487307373 1553 True 2566.0 2566 96.4630 1 1555 1 chr1D.!!$R3 1554
6 TraesCS2A01G172800 chr1D 30695959 30698304 2345 True 1858.5 2514 95.4680 1 2320 2 chr1D.!!$R4 2319
7 TraesCS2A01G172800 chr3D 516401315 516403663 2348 True 1884.0 2543 95.8865 1 2319 2 chr3D.!!$R2 2318
8 TraesCS2A01G172800 chr3D 465175692 465178042 2350 False 1866.5 2543 95.4370 1 2321 2 chr3D.!!$F1 2320
9 TraesCS2A01G172800 chr2B 431357 433707 2350 False 1832.5 2473 95.0805 1 2319 2 chr2B.!!$F1 2318
10 TraesCS2A01G172800 chr7A 303749878 303752225 2347 True 1832.5 2446 95.2730 1 2319 2 chr7A.!!$R1 2318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 775 1.202463 CGGTGGTTTTCAATGTGCCAA 60.202 47.619 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2416 0.035458 GATCCATGGGCCTTCTACGG 59.965 60.0 13.02 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 151 6.385176 TGATTGGAATGGAGAGAGTAACTGAT 59.615 38.462 0.00 0.00 0.00 2.90
268 270 4.419522 AGCAACAATGGAAACGACATAC 57.580 40.909 0.00 0.00 0.00 2.39
320 322 8.181573 CCTACAAATTATCGCTTACACATGTTT 58.818 33.333 0.00 0.00 0.00 2.83
473 475 6.942532 TGCAAAGGATTCATCTATACCAAC 57.057 37.500 0.00 0.00 0.00 3.77
612 616 6.454583 GCATGTTCATGTGCAAACATTCATAC 60.455 38.462 10.98 0.00 42.00 2.39
654 658 1.553248 ACACACATATACACCGGCAGT 59.447 47.619 0.00 2.67 0.00 4.40
771 775 1.202463 CGGTGGTTTTCAATGTGCCAA 60.202 47.619 0.00 0.00 0.00 4.52
811 815 9.349713 AGTACATCATTGAGTTTTACCTTCAAA 57.650 29.630 0.00 0.00 34.80 2.69
1037 1043 2.818132 GGCTGGAGCTGCGAGTAT 59.182 61.111 0.00 0.00 41.70 2.12
1121 1128 3.188492 TGTTAACTGTTTGCGAAGACGA 58.812 40.909 7.22 0.00 42.66 4.20
1425 1432 8.185505 GTCTGTTTATGTTTGTTTTGTGACCTA 58.814 33.333 0.00 0.00 0.00 3.08
1482 1489 5.625311 CAGGTCGCAACTTTTCTTTGTAATC 59.375 40.000 0.00 0.00 0.00 1.75
1665 1710 6.490040 TGCAATGATGATGATGATGATGTTCT 59.510 34.615 0.00 0.00 0.00 3.01
1691 1736 2.687935 TCACGATGAAGACGATGATGGA 59.312 45.455 0.00 0.00 34.70 3.41
1745 1790 4.726416 CTTTTCCTGTTGGATGATGTTCG 58.274 43.478 0.00 0.00 42.81 3.95
2052 2097 4.075963 ACATTGCAAATTCTTTGTGGCT 57.924 36.364 1.71 0.00 42.56 4.75
2060 2105 8.116651 TGCAAATTCTTTGTGGCTAAGTAATA 57.883 30.769 1.97 0.00 42.56 0.98
2129 2174 5.518847 CCACCAACGTATATGAGTGTTGTAG 59.481 44.000 0.00 0.00 39.95 2.74
2172 2217 3.564225 ACTCTTGCAACGGTTCCTTTTAG 59.436 43.478 0.00 0.00 0.00 1.85
2249 2294 3.888583 TCCAAAACCGTTGGTAAAGACT 58.111 40.909 5.08 0.00 40.40 3.24
2321 2366 1.149288 AGGGGTCCTGTTGTAGTGAGA 59.851 52.381 0.00 0.00 29.57 3.27
2322 2367 1.975680 GGGGTCCTGTTGTAGTGAGAA 59.024 52.381 0.00 0.00 0.00 2.87
2323 2368 2.028020 GGGGTCCTGTTGTAGTGAGAAG 60.028 54.545 0.00 0.00 0.00 2.85
2324 2369 2.028020 GGGTCCTGTTGTAGTGAGAAGG 60.028 54.545 0.00 0.00 0.00 3.46
2325 2370 2.613223 GGTCCTGTTGTAGTGAGAAGGC 60.613 54.545 0.00 0.00 0.00 4.35
2326 2371 1.623811 TCCTGTTGTAGTGAGAAGGCC 59.376 52.381 0.00 0.00 0.00 5.19
2327 2372 1.347707 CCTGTTGTAGTGAGAAGGCCA 59.652 52.381 5.01 0.00 0.00 5.36
2328 2373 2.224523 CCTGTTGTAGTGAGAAGGCCAA 60.225 50.000 5.01 0.00 0.00 4.52
2329 2374 2.808543 CTGTTGTAGTGAGAAGGCCAAC 59.191 50.000 5.01 0.00 34.32 3.77
2330 2375 1.798813 GTTGTAGTGAGAAGGCCAACG 59.201 52.381 5.01 0.00 0.00 4.10
2331 2376 0.320374 TGTAGTGAGAAGGCCAACGG 59.680 55.000 5.01 0.00 0.00 4.44
2332 2377 0.606604 GTAGTGAGAAGGCCAACGGA 59.393 55.000 5.01 0.00 0.00 4.69
2333 2378 1.207329 GTAGTGAGAAGGCCAACGGAT 59.793 52.381 5.01 0.00 0.00 4.18
2334 2379 0.250513 AGTGAGAAGGCCAACGGATC 59.749 55.000 5.01 0.00 0.00 3.36
2335 2380 0.744771 GTGAGAAGGCCAACGGATCC 60.745 60.000 5.01 0.00 0.00 3.36
2336 2381 0.909610 TGAGAAGGCCAACGGATCCT 60.910 55.000 10.75 0.00 0.00 3.24
2337 2382 1.120530 GAGAAGGCCAACGGATCCTA 58.879 55.000 10.75 0.00 0.00 2.94
2338 2383 0.831307 AGAAGGCCAACGGATCCTAC 59.169 55.000 10.75 0.00 0.00 3.18
2339 2384 0.529992 GAAGGCCAACGGATCCTACG 60.530 60.000 10.75 0.00 37.36 3.51
2340 2385 1.968050 AAGGCCAACGGATCCTACGG 61.968 60.000 10.75 7.97 35.23 4.02
2341 2386 2.588034 GCCAACGGATCCTACGGC 60.588 66.667 16.57 16.57 35.23 5.68
2342 2387 2.108362 CCAACGGATCCTACGGCC 59.892 66.667 10.75 0.00 35.23 6.13
2343 2388 2.108362 CAACGGATCCTACGGCCC 59.892 66.667 10.75 0.00 35.23 5.80
2344 2389 3.534056 AACGGATCCTACGGCCCG 61.534 66.667 10.75 0.00 41.66 6.13
2345 2390 4.828296 ACGGATCCTACGGCCCGT 62.828 66.667 15.63 15.63 43.10 5.28
2346 2391 2.595463 CGGATCCTACGGCCCGTA 60.595 66.667 16.33 16.33 41.54 4.02
2347 2392 1.975407 CGGATCCTACGGCCCGTAT 60.975 63.158 17.65 2.49 41.53 3.06
2348 2393 0.677731 CGGATCCTACGGCCCGTATA 60.678 60.000 17.65 8.70 41.53 1.47
2349 2394 1.101331 GGATCCTACGGCCCGTATAG 58.899 60.000 17.65 11.58 41.53 1.31
2350 2395 1.340405 GGATCCTACGGCCCGTATAGA 60.340 57.143 17.65 16.58 41.53 1.98
2351 2396 2.440409 GATCCTACGGCCCGTATAGAA 58.560 52.381 17.65 3.07 41.53 2.10
2352 2397 1.901591 TCCTACGGCCCGTATAGAAG 58.098 55.000 17.65 6.21 41.53 2.85
2353 2398 0.886563 CCTACGGCCCGTATAGAAGG 59.113 60.000 17.65 12.22 41.53 3.46
2354 2399 0.243095 CTACGGCCCGTATAGAAGGC 59.757 60.000 17.65 0.00 41.53 4.35
2359 2404 1.523758 GCCCGTATAGAAGGCCAATG 58.476 55.000 5.01 0.00 41.00 2.82
2360 2405 1.882352 GCCCGTATAGAAGGCCAATGG 60.882 57.143 5.01 0.00 41.00 3.16
2361 2406 1.697432 CCCGTATAGAAGGCCAATGGA 59.303 52.381 5.01 0.00 0.00 3.41
2362 2407 2.305927 CCCGTATAGAAGGCCAATGGAT 59.694 50.000 5.01 0.00 0.00 3.41
2363 2408 3.600388 CCGTATAGAAGGCCAATGGATC 58.400 50.000 5.01 0.00 0.00 3.36
2364 2409 3.600388 CGTATAGAAGGCCAATGGATCC 58.400 50.000 5.01 4.20 0.00 3.36
2365 2410 3.261897 CGTATAGAAGGCCAATGGATCCT 59.738 47.826 14.23 0.00 0.00 3.24
2366 2411 4.466370 CGTATAGAAGGCCAATGGATCCTA 59.534 45.833 14.23 0.00 0.00 2.94
2367 2412 4.917906 ATAGAAGGCCAATGGATCCTAC 57.082 45.455 14.23 0.00 0.00 3.18
2368 2413 1.417890 AGAAGGCCAATGGATCCTACG 59.582 52.381 14.23 0.41 0.00 3.51
2369 2414 0.474184 AAGGCCAATGGATCCTACGG 59.526 55.000 14.23 11.14 0.00 4.02
2370 2415 1.600916 GGCCAATGGATCCTACGGC 60.601 63.158 23.17 23.17 38.85 5.68
2371 2416 1.600916 GCCAATGGATCCTACGGCC 60.601 63.158 21.59 0.00 33.31 6.13
2372 2417 1.073199 CCAATGGATCCTACGGCCC 59.927 63.158 14.23 0.00 0.00 5.80
2373 2418 1.301716 CAATGGATCCTACGGCCCG 60.302 63.158 14.23 0.00 0.00 6.13
2374 2419 1.764854 AATGGATCCTACGGCCCGT 60.765 57.895 15.63 15.63 44.35 5.28
2375 2420 0.470456 AATGGATCCTACGGCCCGTA 60.470 55.000 16.33 16.33 41.54 4.02
2386 2431 2.203209 GCCCGTAGAAGGCCCATG 60.203 66.667 0.00 0.00 45.16 3.66
2387 2432 2.510906 CCCGTAGAAGGCCCATGG 59.489 66.667 4.14 4.14 0.00 3.66
2388 2433 2.070039 CCCGTAGAAGGCCCATGGA 61.070 63.158 15.22 0.00 0.00 3.41
2389 2434 1.418908 CCCGTAGAAGGCCCATGGAT 61.419 60.000 15.22 0.00 0.00 3.41
2390 2435 0.035458 CCGTAGAAGGCCCATGGATC 59.965 60.000 15.22 4.61 0.00 3.36
2391 2436 0.758734 CGTAGAAGGCCCATGGATCA 59.241 55.000 15.22 0.00 0.00 2.92
2392 2437 1.349026 CGTAGAAGGCCCATGGATCAT 59.651 52.381 15.22 0.00 0.00 2.45
2393 2438 2.567169 CGTAGAAGGCCCATGGATCATA 59.433 50.000 15.22 0.00 0.00 2.15
2394 2439 3.007940 CGTAGAAGGCCCATGGATCATAA 59.992 47.826 15.22 0.00 0.00 1.90
2395 2440 3.803186 AGAAGGCCCATGGATCATAAG 57.197 47.619 15.22 0.00 0.00 1.73
2396 2441 2.377869 AGAAGGCCCATGGATCATAAGG 59.622 50.000 15.22 0.00 0.00 2.69
2397 2442 0.407139 AGGCCCATGGATCATAAGGC 59.593 55.000 15.22 6.85 39.95 4.35
2398 2443 2.967270 GCCCATGGATCATAAGGCC 58.033 57.895 15.22 0.00 36.84 5.19
2399 2444 0.613012 GCCCATGGATCATAAGGCCC 60.613 60.000 15.22 0.00 36.84 5.80
2400 2445 0.322816 CCCATGGATCATAAGGCCCG 60.323 60.000 15.22 0.00 0.00 6.13
2401 2446 0.962356 CCATGGATCATAAGGCCCGC 60.962 60.000 5.56 0.00 0.00 6.13
2402 2447 0.250858 CATGGATCATAAGGCCCGCA 60.251 55.000 0.00 0.00 0.00 5.69
2403 2448 0.478072 ATGGATCATAAGGCCCGCAA 59.522 50.000 0.00 0.00 0.00 4.85
2404 2449 0.179020 TGGATCATAAGGCCCGCAAG 60.179 55.000 0.00 0.00 0.00 4.01
2405 2450 0.108585 GGATCATAAGGCCCGCAAGA 59.891 55.000 0.00 0.00 43.02 3.02
2406 2451 1.517242 GATCATAAGGCCCGCAAGAG 58.483 55.000 0.00 0.00 43.02 2.85
2407 2452 0.109342 ATCATAAGGCCCGCAAGAGG 59.891 55.000 0.00 0.00 43.02 3.69
2415 2460 4.431131 CCGCAAGAGGCCCATGGT 62.431 66.667 11.73 0.00 40.31 3.55
2416 2461 2.361610 CGCAAGAGGCCCATGGTT 60.362 61.111 11.73 0.00 40.31 3.67
2417 2462 1.077787 CGCAAGAGGCCCATGGTTA 60.078 57.895 11.73 0.00 40.31 2.85
2418 2463 1.376609 CGCAAGAGGCCCATGGTTAC 61.377 60.000 11.73 0.00 40.31 2.50
2419 2464 0.323360 GCAAGAGGCCCATGGTTACA 60.323 55.000 11.73 0.00 36.11 2.41
2420 2465 1.890573 GCAAGAGGCCCATGGTTACAA 60.891 52.381 11.73 0.00 36.11 2.41
2421 2466 1.818674 CAAGAGGCCCATGGTTACAAC 59.181 52.381 11.73 0.00 0.00 3.32
2422 2467 1.072266 AGAGGCCCATGGTTACAACA 58.928 50.000 11.73 0.00 0.00 3.33
2423 2468 1.004745 AGAGGCCCATGGTTACAACAG 59.995 52.381 11.73 0.00 0.00 3.16
2424 2469 0.777446 AGGCCCATGGTTACAACAGT 59.223 50.000 11.73 0.00 0.00 3.55
2425 2470 1.146982 AGGCCCATGGTTACAACAGTT 59.853 47.619 11.73 0.00 0.00 3.16
2426 2471 1.544246 GGCCCATGGTTACAACAGTTC 59.456 52.381 11.73 0.00 0.00 3.01
2427 2472 1.199097 GCCCATGGTTACAACAGTTCG 59.801 52.381 11.73 0.00 0.00 3.95
2428 2473 2.500229 CCCATGGTTACAACAGTTCGT 58.500 47.619 11.73 0.00 0.00 3.85
2429 2474 2.225491 CCCATGGTTACAACAGTTCGTG 59.775 50.000 11.73 0.00 0.00 4.35
2430 2475 2.875933 CCATGGTTACAACAGTTCGTGT 59.124 45.455 2.57 0.00 43.24 4.49
2431 2476 3.303725 CCATGGTTACAACAGTTCGTGTG 60.304 47.826 2.57 0.00 40.26 3.82
2432 2477 2.975266 TGGTTACAACAGTTCGTGTGT 58.025 42.857 0.00 0.00 40.26 3.72
2433 2478 3.336468 TGGTTACAACAGTTCGTGTGTT 58.664 40.909 0.00 0.00 40.26 3.32
2436 2481 3.234368 CAACAGTTCGTGTGTTGCC 57.766 52.632 12.13 0.00 46.03 4.52
2437 2482 0.449786 CAACAGTTCGTGTGTTGCCA 59.550 50.000 12.13 0.00 46.03 4.92
2438 2483 1.065401 CAACAGTTCGTGTGTTGCCAT 59.935 47.619 12.13 0.00 46.03 4.40
2439 2484 0.662619 ACAGTTCGTGTGTTGCCATG 59.337 50.000 0.00 0.00 38.28 3.66
2440 2485 0.943673 CAGTTCGTGTGTTGCCATGA 59.056 50.000 0.00 0.00 0.00 3.07
2441 2486 1.536766 CAGTTCGTGTGTTGCCATGAT 59.463 47.619 0.00 0.00 30.79 2.45
2442 2487 2.030893 CAGTTCGTGTGTTGCCATGATT 60.031 45.455 0.00 0.00 30.79 2.57
2443 2488 3.188254 CAGTTCGTGTGTTGCCATGATTA 59.812 43.478 0.00 0.00 30.79 1.75
2444 2489 4.009675 AGTTCGTGTGTTGCCATGATTAT 58.990 39.130 0.00 0.00 30.79 1.28
2445 2490 4.458989 AGTTCGTGTGTTGCCATGATTATT 59.541 37.500 0.00 0.00 30.79 1.40
2446 2491 5.048083 AGTTCGTGTGTTGCCATGATTATTT 60.048 36.000 0.00 0.00 30.79 1.40
2447 2492 5.384063 TCGTGTGTTGCCATGATTATTTT 57.616 34.783 0.00 0.00 0.00 1.82
2448 2493 5.159925 TCGTGTGTTGCCATGATTATTTTG 58.840 37.500 0.00 0.00 0.00 2.44
2449 2494 4.326817 CGTGTGTTGCCATGATTATTTTGG 59.673 41.667 0.00 0.00 0.00 3.28
2459 2504 6.515832 CCATGATTATTTTGGCCTAGTTTCC 58.484 40.000 3.32 0.00 0.00 3.13
2460 2505 6.098124 CCATGATTATTTTGGCCTAGTTTCCA 59.902 38.462 3.32 0.00 0.00 3.53
2461 2506 7.364585 CCATGATTATTTTGGCCTAGTTTCCAA 60.365 37.037 3.32 4.75 40.31 3.53
2462 2507 7.546250 TGATTATTTTGGCCTAGTTTCCAAA 57.454 32.000 3.32 13.74 46.98 3.28
2468 2513 5.993748 TTGGCCTAGTTTCCAAAAATAGG 57.006 39.130 17.34 17.34 39.22 2.57
2469 2514 5.005628 TGGCCTAGTTTCCAAAAATAGGT 57.994 39.130 20.69 0.00 33.14 3.08
2470 2515 5.399113 TGGCCTAGTTTCCAAAAATAGGTT 58.601 37.500 20.69 0.00 33.14 3.50
2471 2516 6.553857 TGGCCTAGTTTCCAAAAATAGGTTA 58.446 36.000 20.69 11.44 33.14 2.85
2472 2517 7.186268 TGGCCTAGTTTCCAAAAATAGGTTAT 58.814 34.615 20.69 0.00 33.14 1.89
2473 2518 7.676468 TGGCCTAGTTTCCAAAAATAGGTTATT 59.324 33.333 20.69 0.00 33.14 1.40
2474 2519 7.979537 GGCCTAGTTTCCAAAAATAGGTTATTG 59.020 37.037 20.69 2.65 33.14 1.90
2475 2520 7.979537 GCCTAGTTTCCAAAAATAGGTTATTGG 59.020 37.037 20.69 0.00 42.92 3.16
2476 2521 8.474831 CCTAGTTTCCAAAAATAGGTTATTGGG 58.525 37.037 14.66 0.00 42.06 4.12
2477 2522 7.252612 AGTTTCCAAAAATAGGTTATTGGGG 57.747 36.000 3.78 0.00 42.06 4.96
2478 2523 5.685520 TTCCAAAAATAGGTTATTGGGGC 57.314 39.130 3.78 0.00 42.06 5.80
2479 2524 4.034410 TCCAAAAATAGGTTATTGGGGCC 58.966 43.478 0.00 0.00 42.06 5.80
2480 2525 3.777522 CCAAAAATAGGTTATTGGGGCCA 59.222 43.478 4.39 0.00 38.89 5.36
2481 2526 4.383661 CCAAAAATAGGTTATTGGGGCCAC 60.384 45.833 4.39 0.00 38.89 5.01
2482 2527 4.346478 AAAATAGGTTATTGGGGCCACT 57.654 40.909 6.53 0.00 0.00 4.00
2483 2528 5.475398 AAAATAGGTTATTGGGGCCACTA 57.525 39.130 6.53 0.00 0.00 2.74
2484 2529 4.724279 AATAGGTTATTGGGGCCACTAG 57.276 45.455 6.53 0.00 0.00 2.57
2485 2530 2.280308 AGGTTATTGGGGCCACTAGA 57.720 50.000 6.53 0.00 0.00 2.43
2486 2531 2.568979 AGGTTATTGGGGCCACTAGAA 58.431 47.619 6.53 0.00 0.00 2.10
2487 2532 2.923629 AGGTTATTGGGGCCACTAGAAA 59.076 45.455 6.53 0.00 0.00 2.52
2488 2533 3.335484 AGGTTATTGGGGCCACTAGAAAA 59.665 43.478 6.53 0.00 0.00 2.29
2489 2534 4.090819 GGTTATTGGGGCCACTAGAAAAA 58.909 43.478 6.53 0.00 0.00 1.94
2490 2535 4.081862 GGTTATTGGGGCCACTAGAAAAAC 60.082 45.833 6.53 2.44 0.00 2.43
2491 2536 2.757894 TTGGGGCCACTAGAAAAACA 57.242 45.000 6.53 0.00 0.00 2.83
2492 2537 1.989706 TGGGGCCACTAGAAAAACAC 58.010 50.000 6.53 0.00 0.00 3.32
2493 2538 1.215673 TGGGGCCACTAGAAAAACACA 59.784 47.619 6.53 0.00 0.00 3.72
2494 2539 1.886542 GGGGCCACTAGAAAAACACAG 59.113 52.381 4.39 0.00 0.00 3.66
2495 2540 2.488347 GGGGCCACTAGAAAAACACAGA 60.488 50.000 4.39 0.00 0.00 3.41
2496 2541 3.219281 GGGCCACTAGAAAAACACAGAA 58.781 45.455 4.39 0.00 0.00 3.02
2497 2542 3.634910 GGGCCACTAGAAAAACACAGAAA 59.365 43.478 4.39 0.00 0.00 2.52
2498 2543 4.098807 GGGCCACTAGAAAAACACAGAAAA 59.901 41.667 4.39 0.00 0.00 2.29
2499 2544 5.394773 GGGCCACTAGAAAAACACAGAAAAA 60.395 40.000 4.39 0.00 0.00 1.94
2500 2545 5.748630 GGCCACTAGAAAAACACAGAAAAAG 59.251 40.000 0.00 0.00 0.00 2.27
2501 2546 6.405397 GGCCACTAGAAAAACACAGAAAAAGA 60.405 38.462 0.00 0.00 0.00 2.52
2502 2547 7.033185 GCCACTAGAAAAACACAGAAAAAGAA 58.967 34.615 0.00 0.00 0.00 2.52
2503 2548 7.009265 GCCACTAGAAAAACACAGAAAAAGAAC 59.991 37.037 0.00 0.00 0.00 3.01
2504 2549 8.244113 CCACTAGAAAAACACAGAAAAAGAACT 58.756 33.333 0.00 0.00 0.00 3.01
2505 2550 9.065871 CACTAGAAAAACACAGAAAAAGAACTG 57.934 33.333 0.00 0.00 39.65 3.16
2506 2551 6.951256 AGAAAAACACAGAAAAAGAACTGC 57.049 33.333 0.00 0.00 37.61 4.40
2507 2552 6.454795 AGAAAAACACAGAAAAAGAACTGCA 58.545 32.000 0.00 0.00 37.61 4.41
2508 2553 6.587608 AGAAAAACACAGAAAAAGAACTGCAG 59.412 34.615 13.48 13.48 37.61 4.41
2509 2554 5.391312 AAACACAGAAAAAGAACTGCAGT 57.609 34.783 15.25 15.25 37.61 4.40
2510 2555 4.361451 ACACAGAAAAAGAACTGCAGTG 57.639 40.909 22.49 6.89 37.61 3.66
2511 2556 4.009675 ACACAGAAAAAGAACTGCAGTGA 58.990 39.130 22.49 0.00 37.61 3.41
2512 2557 4.142600 ACACAGAAAAAGAACTGCAGTGAC 60.143 41.667 22.49 17.42 37.61 3.67
2513 2558 4.095483 CACAGAAAAAGAACTGCAGTGACT 59.905 41.667 22.49 19.42 37.61 3.41
2514 2559 5.294306 CACAGAAAAAGAACTGCAGTGACTA 59.706 40.000 22.49 0.00 37.61 2.59
2515 2560 5.294552 ACAGAAAAAGAACTGCAGTGACTAC 59.705 40.000 22.49 13.83 37.61 2.73
2516 2561 5.294306 CAGAAAAAGAACTGCAGTGACTACA 59.706 40.000 22.49 0.00 0.00 2.74
2517 2562 5.880332 AGAAAAAGAACTGCAGTGACTACAA 59.120 36.000 22.49 0.00 0.00 2.41
2518 2563 5.741388 AAAAGAACTGCAGTGACTACAAG 57.259 39.130 22.49 0.00 0.00 3.16
2519 2564 2.760374 AGAACTGCAGTGACTACAAGC 58.240 47.619 22.49 1.82 0.00 4.01
2520 2565 2.103094 AGAACTGCAGTGACTACAAGCA 59.897 45.455 22.49 0.00 37.60 3.91
2521 2566 2.620251 ACTGCAGTGACTACAAGCAA 57.380 45.000 20.97 0.00 38.29 3.91
2522 2567 2.917933 ACTGCAGTGACTACAAGCAAA 58.082 42.857 20.97 0.00 38.29 3.68
2523 2568 2.614057 ACTGCAGTGACTACAAGCAAAC 59.386 45.455 20.97 0.00 38.29 2.93
2524 2569 2.613595 CTGCAGTGACTACAAGCAAACA 59.386 45.455 5.25 0.00 38.29 2.83
2525 2570 3.013219 TGCAGTGACTACAAGCAAACAA 58.987 40.909 0.00 0.00 36.74 2.83
2526 2571 3.181501 TGCAGTGACTACAAGCAAACAAC 60.182 43.478 0.00 0.00 36.74 3.32
2527 2572 3.065371 GCAGTGACTACAAGCAAACAACT 59.935 43.478 0.00 0.00 32.21 3.16
2528 2573 4.272504 GCAGTGACTACAAGCAAACAACTA 59.727 41.667 0.00 0.00 32.21 2.24
2529 2574 5.220777 GCAGTGACTACAAGCAAACAACTAA 60.221 40.000 0.00 0.00 32.21 2.24
2530 2575 6.676943 GCAGTGACTACAAGCAAACAACTAAA 60.677 38.462 0.00 0.00 32.21 1.85
2531 2576 6.687105 CAGTGACTACAAGCAAACAACTAAAC 59.313 38.462 0.00 0.00 0.00 2.01
2532 2577 6.373216 AGTGACTACAAGCAAACAACTAAACA 59.627 34.615 0.00 0.00 0.00 2.83
2533 2578 7.024768 GTGACTACAAGCAAACAACTAAACAA 58.975 34.615 0.00 0.00 0.00 2.83
2534 2579 7.218204 GTGACTACAAGCAAACAACTAAACAAG 59.782 37.037 0.00 0.00 0.00 3.16
2535 2580 7.119992 TGACTACAAGCAAACAACTAAACAAGA 59.880 33.333 0.00 0.00 0.00 3.02
2536 2581 7.248437 ACTACAAGCAAACAACTAAACAAGAC 58.752 34.615 0.00 0.00 0.00 3.01
2537 2582 6.019779 ACAAGCAAACAACTAAACAAGACA 57.980 33.333 0.00 0.00 0.00 3.41
2538 2583 6.451393 ACAAGCAAACAACTAAACAAGACAA 58.549 32.000 0.00 0.00 0.00 3.18
2539 2584 6.364976 ACAAGCAAACAACTAAACAAGACAAC 59.635 34.615 0.00 0.00 0.00 3.32
2540 2585 6.019779 AGCAAACAACTAAACAAGACAACA 57.980 33.333 0.00 0.00 0.00 3.33
2541 2586 6.451393 AGCAAACAACTAAACAAGACAACAA 58.549 32.000 0.00 0.00 0.00 2.83
2542 2587 6.586082 AGCAAACAACTAAACAAGACAACAAG 59.414 34.615 0.00 0.00 0.00 3.16
2543 2588 6.183360 GCAAACAACTAAACAAGACAACAAGG 60.183 38.462 0.00 0.00 0.00 3.61
2544 2589 6.827586 AACAACTAAACAAGACAACAAGGA 57.172 33.333 0.00 0.00 0.00 3.36
2545 2590 6.827586 ACAACTAAACAAGACAACAAGGAA 57.172 33.333 0.00 0.00 0.00 3.36
2546 2591 7.222000 ACAACTAAACAAGACAACAAGGAAA 57.778 32.000 0.00 0.00 0.00 3.13
2547 2592 7.836842 ACAACTAAACAAGACAACAAGGAAAT 58.163 30.769 0.00 0.00 0.00 2.17
2548 2593 8.962679 ACAACTAAACAAGACAACAAGGAAATA 58.037 29.630 0.00 0.00 0.00 1.40
2549 2594 9.796120 CAACTAAACAAGACAACAAGGAAATAA 57.204 29.630 0.00 0.00 0.00 1.40
2555 2600 9.476202 AACAAGACAACAAGGAAATAAATAAGC 57.524 29.630 0.00 0.00 0.00 3.09
2556 2601 8.637986 ACAAGACAACAAGGAAATAAATAAGCA 58.362 29.630 0.00 0.00 0.00 3.91
2557 2602 9.474920 CAAGACAACAAGGAAATAAATAAGCAA 57.525 29.630 0.00 0.00 0.00 3.91
2558 2603 9.696917 AAGACAACAAGGAAATAAATAAGCAAG 57.303 29.630 0.00 0.00 0.00 4.01
2559 2604 7.814587 AGACAACAAGGAAATAAATAAGCAAGC 59.185 33.333 0.00 0.00 0.00 4.01
2560 2605 7.441017 ACAACAAGGAAATAAATAAGCAAGCA 58.559 30.769 0.00 0.00 0.00 3.91
2561 2606 7.930865 ACAACAAGGAAATAAATAAGCAAGCAA 59.069 29.630 0.00 0.00 0.00 3.91
2562 2607 8.938906 CAACAAGGAAATAAATAAGCAAGCAAT 58.061 29.630 0.00 0.00 0.00 3.56
2563 2608 9.506018 AACAAGGAAATAAATAAGCAAGCAATT 57.494 25.926 0.00 0.00 0.00 2.32
2567 2612 9.301153 AGGAAATAAATAAGCAAGCAATTAACG 57.699 29.630 0.00 0.00 0.00 3.18
2568 2613 8.055986 GGAAATAAATAAGCAAGCAATTAACGC 58.944 33.333 0.00 0.00 0.00 4.84
2569 2614 8.702163 AAATAAATAAGCAAGCAATTAACGCT 57.298 26.923 0.00 0.00 42.98 5.07
2570 2615 9.796120 AAATAAATAAGCAAGCAATTAACGCTA 57.204 25.926 1.83 0.00 39.29 4.26
2571 2616 9.450807 AATAAATAAGCAAGCAATTAACGCTAG 57.549 29.630 1.83 0.00 39.29 3.42
2572 2617 6.677781 AATAAGCAAGCAATTAACGCTAGA 57.322 33.333 0.00 0.00 39.29 2.43
2573 2618 4.342352 AAGCAAGCAATTAACGCTAGAC 57.658 40.909 0.00 0.00 39.29 2.59
2574 2619 3.600388 AGCAAGCAATTAACGCTAGACT 58.400 40.909 0.00 0.00 39.29 3.24
2575 2620 4.755411 AGCAAGCAATTAACGCTAGACTA 58.245 39.130 0.00 0.00 39.29 2.59
2576 2621 5.360591 AGCAAGCAATTAACGCTAGACTAT 58.639 37.500 0.00 0.00 39.29 2.12
2577 2622 5.817816 AGCAAGCAATTAACGCTAGACTATT 59.182 36.000 0.00 0.00 39.29 1.73
2578 2623 6.984474 AGCAAGCAATTAACGCTAGACTATTA 59.016 34.615 0.00 0.00 39.29 0.98
2579 2624 7.042658 AGCAAGCAATTAACGCTAGACTATTAC 60.043 37.037 0.00 0.00 39.29 1.89
2580 2625 7.564988 CAAGCAATTAACGCTAGACTATTACC 58.435 38.462 0.00 0.00 39.29 2.85
2581 2626 5.919141 AGCAATTAACGCTAGACTATTACCG 59.081 40.000 0.00 0.00 38.15 4.02
2582 2627 5.388164 GCAATTAACGCTAGACTATTACCGC 60.388 44.000 0.00 0.00 0.00 5.68
2583 2628 5.702349 ATTAACGCTAGACTATTACCGCT 57.298 39.130 0.00 0.00 0.00 5.52
2584 2629 6.808008 ATTAACGCTAGACTATTACCGCTA 57.192 37.500 0.00 0.00 0.00 4.26
2585 2630 6.808008 TTAACGCTAGACTATTACCGCTAT 57.192 37.500 0.00 0.00 0.00 2.97
2586 2631 5.702349 AACGCTAGACTATTACCGCTATT 57.298 39.130 0.00 0.00 0.00 1.73
2587 2632 6.808008 AACGCTAGACTATTACCGCTATTA 57.192 37.500 0.00 0.00 0.00 0.98
2588 2633 6.175712 ACGCTAGACTATTACCGCTATTAC 57.824 41.667 0.00 0.00 0.00 1.89
2589 2634 5.702670 ACGCTAGACTATTACCGCTATTACA 59.297 40.000 0.00 0.00 0.00 2.41
2590 2635 6.020372 CGCTAGACTATTACCGCTATTACAC 58.980 44.000 0.00 0.00 0.00 2.90
2591 2636 6.347969 CGCTAGACTATTACCGCTATTACACA 60.348 42.308 0.00 0.00 0.00 3.72
2592 2637 7.536855 GCTAGACTATTACCGCTATTACACAT 58.463 38.462 0.00 0.00 0.00 3.21
2593 2638 8.671921 GCTAGACTATTACCGCTATTACACATA 58.328 37.037 0.00 0.00 0.00 2.29
2601 2646 8.991243 TTACCGCTATTACACATATTACATCC 57.009 34.615 0.00 0.00 0.00 3.51
2602 2647 6.999950 ACCGCTATTACACATATTACATCCA 58.000 36.000 0.00 0.00 0.00 3.41
2603 2648 6.872020 ACCGCTATTACACATATTACATCCAC 59.128 38.462 0.00 0.00 0.00 4.02
2604 2649 7.097192 CCGCTATTACACATATTACATCCACT 58.903 38.462 0.00 0.00 0.00 4.00
2605 2650 8.248253 CCGCTATTACACATATTACATCCACTA 58.752 37.037 0.00 0.00 0.00 2.74
2606 2651 9.290483 CGCTATTACACATATTACATCCACTAG 57.710 37.037 0.00 0.00 0.00 2.57
2607 2652 9.587772 GCTATTACACATATTACATCCACTAGG 57.412 37.037 0.00 0.00 0.00 3.02
2608 2653 9.587772 CTATTACACATATTACATCCACTAGGC 57.412 37.037 0.00 0.00 33.74 3.93
2609 2654 5.887214 ACACATATTACATCCACTAGGCA 57.113 39.130 0.00 0.00 33.74 4.75
2610 2655 6.439636 ACACATATTACATCCACTAGGCAT 57.560 37.500 0.00 0.00 33.74 4.40
2611 2656 6.467677 ACACATATTACATCCACTAGGCATC 58.532 40.000 0.00 0.00 33.74 3.91
2612 2657 6.043127 ACACATATTACATCCACTAGGCATCA 59.957 38.462 0.00 0.00 33.74 3.07
2613 2658 6.936335 CACATATTACATCCACTAGGCATCAA 59.064 38.462 0.00 0.00 33.74 2.57
2614 2659 7.445096 CACATATTACATCCACTAGGCATCAAA 59.555 37.037 0.00 0.00 33.74 2.69
2615 2660 7.663081 ACATATTACATCCACTAGGCATCAAAG 59.337 37.037 0.00 0.00 33.74 2.77
2616 2661 5.435686 TTACATCCACTAGGCATCAAAGT 57.564 39.130 0.00 0.00 33.74 2.66
2617 2662 4.307032 ACATCCACTAGGCATCAAAGTT 57.693 40.909 0.00 0.00 33.74 2.66
2618 2663 4.265073 ACATCCACTAGGCATCAAAGTTC 58.735 43.478 0.00 0.00 33.74 3.01
2619 2664 2.972625 TCCACTAGGCATCAAAGTTCG 58.027 47.619 0.00 0.00 33.74 3.95
2620 2665 1.398390 CCACTAGGCATCAAAGTTCGC 59.602 52.381 0.00 0.00 0.00 4.70
2621 2666 1.398390 CACTAGGCATCAAAGTTCGCC 59.602 52.381 0.00 0.00 45.23 5.54
2623 2668 4.868195 GGCATCAAAGTTCGCCAC 57.132 55.556 0.00 0.00 44.25 5.01
2624 2669 1.212751 GGCATCAAAGTTCGCCACC 59.787 57.895 0.00 0.00 44.25 4.61
2625 2670 1.523154 GGCATCAAAGTTCGCCACCA 61.523 55.000 0.00 0.00 44.25 4.17
2626 2671 0.109597 GCATCAAAGTTCGCCACCAG 60.110 55.000 0.00 0.00 0.00 4.00
2627 2672 1.238439 CATCAAAGTTCGCCACCAGT 58.762 50.000 0.00 0.00 0.00 4.00
2628 2673 1.069022 CATCAAAGTTCGCCACCAGTG 60.069 52.381 0.00 0.00 0.00 3.66
2629 2674 1.008538 CAAAGTTCGCCACCAGTGC 60.009 57.895 0.00 0.00 0.00 4.40
2630 2675 1.453015 AAAGTTCGCCACCAGTGCA 60.453 52.632 0.00 0.00 0.00 4.57
2631 2676 1.034838 AAAGTTCGCCACCAGTGCAA 61.035 50.000 0.00 0.00 0.00 4.08
2632 2677 1.034838 AAGTTCGCCACCAGTGCAAA 61.035 50.000 0.00 0.00 0.00 3.68
2633 2678 0.823356 AGTTCGCCACCAGTGCAAAT 60.823 50.000 0.00 0.00 0.00 2.32
2634 2679 0.878416 GTTCGCCACCAGTGCAAATA 59.122 50.000 0.00 0.00 0.00 1.40
2635 2680 1.472480 GTTCGCCACCAGTGCAAATAT 59.528 47.619 0.00 0.00 0.00 1.28
2636 2681 2.680841 GTTCGCCACCAGTGCAAATATA 59.319 45.455 0.00 0.00 0.00 0.86
2637 2682 2.560504 TCGCCACCAGTGCAAATATAG 58.439 47.619 0.00 0.00 0.00 1.31
2638 2683 1.603802 CGCCACCAGTGCAAATATAGG 59.396 52.381 0.00 0.00 0.00 2.57
2639 2684 1.956477 GCCACCAGTGCAAATATAGGG 59.044 52.381 0.00 0.00 0.00 3.53
2640 2685 2.422803 GCCACCAGTGCAAATATAGGGA 60.423 50.000 0.00 0.00 0.00 4.20
2641 2686 3.897239 CCACCAGTGCAAATATAGGGAA 58.103 45.455 0.00 0.00 0.00 3.97
2642 2687 3.632145 CCACCAGTGCAAATATAGGGAAC 59.368 47.826 0.00 0.00 0.00 3.62
2643 2688 4.269183 CACCAGTGCAAATATAGGGAACA 58.731 43.478 0.00 0.00 0.00 3.18
2644 2689 4.704540 CACCAGTGCAAATATAGGGAACAA 59.295 41.667 0.00 0.00 0.00 2.83
2645 2690 5.184864 CACCAGTGCAAATATAGGGAACAAA 59.815 40.000 0.00 0.00 0.00 2.83
2646 2691 5.418840 ACCAGTGCAAATATAGGGAACAAAG 59.581 40.000 0.00 0.00 0.00 2.77
2647 2692 5.343249 CAGTGCAAATATAGGGAACAAAGC 58.657 41.667 0.00 0.00 0.00 3.51
2648 2693 5.016173 AGTGCAAATATAGGGAACAAAGCA 58.984 37.500 0.00 0.00 0.00 3.91
2649 2694 5.126061 AGTGCAAATATAGGGAACAAAGCAG 59.874 40.000 0.00 0.00 0.00 4.24
2650 2695 4.142182 TGCAAATATAGGGAACAAAGCAGC 60.142 41.667 0.00 0.00 0.00 5.25
2651 2696 4.142182 GCAAATATAGGGAACAAAGCAGCA 60.142 41.667 0.00 0.00 0.00 4.41
2652 2697 5.452356 GCAAATATAGGGAACAAAGCAGCAT 60.452 40.000 0.00 0.00 0.00 3.79
2653 2698 6.239008 GCAAATATAGGGAACAAAGCAGCATA 60.239 38.462 0.00 0.00 0.00 3.14
2654 2699 7.524367 GCAAATATAGGGAACAAAGCAGCATAT 60.524 37.037 0.00 0.00 0.00 1.78
2655 2700 8.362639 CAAATATAGGGAACAAAGCAGCATATT 58.637 33.333 0.00 0.00 0.00 1.28
2656 2701 9.586732 AAATATAGGGAACAAAGCAGCATATTA 57.413 29.630 0.00 0.00 0.00 0.98
2657 2702 6.884280 ATAGGGAACAAAGCAGCATATTAC 57.116 37.500 0.00 0.00 0.00 1.89
2658 2703 4.599041 AGGGAACAAAGCAGCATATTACA 58.401 39.130 0.00 0.00 0.00 2.41
2659 2704 5.203528 AGGGAACAAAGCAGCATATTACAT 58.796 37.500 0.00 0.00 0.00 2.29
2660 2705 6.364701 AGGGAACAAAGCAGCATATTACATA 58.635 36.000 0.00 0.00 0.00 2.29
2661 2706 6.263168 AGGGAACAAAGCAGCATATTACATAC 59.737 38.462 0.00 0.00 0.00 2.39
2662 2707 6.039270 GGGAACAAAGCAGCATATTACATACA 59.961 38.462 0.00 0.00 0.00 2.29
2663 2708 6.912591 GGAACAAAGCAGCATATTACATACAC 59.087 38.462 0.00 0.00 0.00 2.90
2664 2709 7.201732 GGAACAAAGCAGCATATTACATACACT 60.202 37.037 0.00 0.00 0.00 3.55
2665 2710 7.019774 ACAAAGCAGCATATTACATACACTG 57.980 36.000 0.00 0.00 0.00 3.66
2666 2711 6.038603 ACAAAGCAGCATATTACATACACTGG 59.961 38.462 0.00 0.00 0.00 4.00
2667 2712 4.067896 AGCAGCATATTACATACACTGGC 58.932 43.478 0.00 0.00 0.00 4.85
2668 2713 3.189287 GCAGCATATTACATACACTGGCC 59.811 47.826 0.00 0.00 0.00 5.36
2669 2714 3.433274 CAGCATATTACATACACTGGCCG 59.567 47.826 0.00 0.00 0.00 6.13
2670 2715 3.071023 AGCATATTACATACACTGGCCGT 59.929 43.478 0.00 0.00 0.00 5.68
2671 2716 3.432252 GCATATTACATACACTGGCCGTC 59.568 47.826 0.00 0.00 0.00 4.79
2672 2717 4.627058 CATATTACATACACTGGCCGTCA 58.373 43.478 0.00 0.00 0.00 4.35
2673 2718 3.620427 ATTACATACACTGGCCGTCAA 57.380 42.857 0.00 0.00 0.00 3.18
2674 2719 3.404224 TTACATACACTGGCCGTCAAA 57.596 42.857 0.00 0.00 0.00 2.69
2675 2720 2.264005 ACATACACTGGCCGTCAAAA 57.736 45.000 0.00 0.00 0.00 2.44
2676 2721 2.790433 ACATACACTGGCCGTCAAAAT 58.210 42.857 0.00 0.00 0.00 1.82
2677 2722 3.153919 ACATACACTGGCCGTCAAAATT 58.846 40.909 0.00 0.00 0.00 1.82
2678 2723 3.057596 ACATACACTGGCCGTCAAAATTG 60.058 43.478 0.00 0.00 0.00 2.32
2679 2724 0.673437 ACACTGGCCGTCAAAATTGG 59.327 50.000 0.00 0.00 0.00 3.16
2683 2728 4.260194 GCCGTCAAAATTGGCCAC 57.740 55.556 3.88 0.00 43.06 5.01
2684 2729 1.374125 GCCGTCAAAATTGGCCACC 60.374 57.895 3.88 0.00 43.06 4.61
2685 2730 2.045280 CCGTCAAAATTGGCCACCA 58.955 52.632 3.88 0.00 0.00 4.17
2686 2731 0.038343 CCGTCAAAATTGGCCACCAG 60.038 55.000 3.88 0.00 33.81 4.00
2687 2732 0.673437 CGTCAAAATTGGCCACCAGT 59.327 50.000 3.88 0.00 33.81 4.00
2688 2733 1.602668 CGTCAAAATTGGCCACCAGTG 60.603 52.381 3.88 1.48 33.81 3.66
2689 2734 0.392336 TCAAAATTGGCCACCAGTGC 59.608 50.000 3.88 0.00 33.81 4.40
2690 2735 0.106335 CAAAATTGGCCACCAGTGCA 59.894 50.000 3.88 0.00 33.81 4.57
2691 2736 0.835941 AAAATTGGCCACCAGTGCAA 59.164 45.000 3.88 0.00 33.81 4.08
2692 2737 0.835941 AAATTGGCCACCAGTGCAAA 59.164 45.000 3.88 0.00 33.81 3.68
2693 2738 1.058284 AATTGGCCACCAGTGCAAAT 58.942 45.000 3.88 0.00 33.79 2.32
2694 2739 1.935799 ATTGGCCACCAGTGCAAATA 58.064 45.000 3.88 0.00 33.81 1.40
2695 2740 1.709578 TTGGCCACCAGTGCAAATAA 58.290 45.000 3.88 0.00 33.81 1.40
2696 2741 1.709578 TGGCCACCAGTGCAAATAAA 58.290 45.000 0.00 0.00 0.00 1.40
2697 2742 2.255406 TGGCCACCAGTGCAAATAAAT 58.745 42.857 0.00 0.00 0.00 1.40
2698 2743 2.028294 TGGCCACCAGTGCAAATAAATG 60.028 45.455 0.00 0.00 0.00 2.32
2699 2744 2.001872 GCCACCAGTGCAAATAAATGC 58.998 47.619 0.00 0.00 46.58 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.102252 GGTTTCAATCAACAAGGCACCA 59.898 45.455 0.00 0.00 0.00 4.17
292 294 5.736813 TGTGTAAGCGATAATTTGTAGGGT 58.263 37.500 0.00 0.00 0.00 4.34
320 322 7.628769 TGCATGAAAAAGCTACTCATCATAA 57.371 32.000 0.00 0.00 0.00 1.90
771 775 8.864087 TCAATGATGTACTATGAATGTAGAGCT 58.136 33.333 0.00 0.00 0.00 4.09
811 815 6.540438 TCACCTCAACGGAAATAGTCTTAT 57.460 37.500 0.00 0.00 36.31 1.73
1037 1043 5.804639 ACACTGCTGTATCTTGGACAAATA 58.195 37.500 0.00 0.00 0.00 1.40
1167 1174 5.616270 TCAGTGGTCACTTTAGCAATGTAA 58.384 37.500 0.20 0.00 42.01 2.41
1482 1489 2.572191 TGCCCGACTAGATTACAACG 57.428 50.000 0.00 0.00 0.00 4.10
1495 1502 0.535328 TCGAAACATTGGTTGCCCGA 60.535 50.000 0.00 0.00 37.30 5.14
1665 1710 2.804697 TCGTCTTCATCGTGAACCAA 57.195 45.000 0.00 0.00 32.21 3.67
2129 2174 8.366671 AGAGTACAACACATAAAACTGACTTC 57.633 34.615 0.00 0.00 0.00 3.01
2249 2294 4.864704 TGTCCATATATGCGTTGCTAGA 57.135 40.909 7.24 0.00 0.00 2.43
2321 2366 1.520666 CGTAGGATCCGTTGGCCTT 59.479 57.895 5.98 0.00 33.28 4.35
2322 2367 3.217231 CGTAGGATCCGTTGGCCT 58.783 61.111 5.98 0.00 35.82 5.19
2335 2380 0.243095 GCCTTCTATACGGGCCGTAG 59.757 60.000 37.95 29.33 45.45 3.51
2336 2381 2.344535 GCCTTCTATACGGGCCGTA 58.655 57.895 37.76 37.76 46.28 4.02
2337 2382 3.135814 GCCTTCTATACGGGCCGT 58.864 61.111 35.91 35.91 44.35 5.68
2340 2385 1.523758 CATTGGCCTTCTATACGGGC 58.476 55.000 3.32 0.00 45.34 6.13
2341 2386 1.697432 TCCATTGGCCTTCTATACGGG 59.303 52.381 3.32 0.00 0.00 5.28
2342 2387 3.600388 GATCCATTGGCCTTCTATACGG 58.400 50.000 3.32 0.00 0.00 4.02
2343 2388 3.261897 AGGATCCATTGGCCTTCTATACG 59.738 47.826 15.82 0.00 0.00 3.06
2344 2389 4.917906 AGGATCCATTGGCCTTCTATAC 57.082 45.455 15.82 0.00 0.00 1.47
2345 2390 4.466370 CGTAGGATCCATTGGCCTTCTATA 59.534 45.833 15.82 0.00 33.28 1.31
2346 2391 3.261897 CGTAGGATCCATTGGCCTTCTAT 59.738 47.826 15.82 0.00 33.28 1.98
2347 2392 2.632996 CGTAGGATCCATTGGCCTTCTA 59.367 50.000 15.82 0.00 33.28 2.10
2348 2393 1.417890 CGTAGGATCCATTGGCCTTCT 59.582 52.381 15.82 0.07 33.28 2.85
2349 2394 1.884235 CGTAGGATCCATTGGCCTTC 58.116 55.000 15.82 2.37 33.28 3.46
2370 2415 1.418908 ATCCATGGGCCTTCTACGGG 61.419 60.000 13.02 0.00 0.00 5.28
2371 2416 0.035458 GATCCATGGGCCTTCTACGG 59.965 60.000 13.02 0.00 0.00 4.02
2372 2417 0.758734 TGATCCATGGGCCTTCTACG 59.241 55.000 13.02 0.00 0.00 3.51
2373 2418 4.566488 CCTTATGATCCATGGGCCTTCTAC 60.566 50.000 13.02 0.00 0.00 2.59
2374 2419 3.588842 CCTTATGATCCATGGGCCTTCTA 59.411 47.826 13.02 0.00 0.00 2.10
2375 2420 2.377869 CCTTATGATCCATGGGCCTTCT 59.622 50.000 13.02 0.00 0.00 2.85
2376 2421 2.800250 CCTTATGATCCATGGGCCTTC 58.200 52.381 13.02 5.02 0.00 3.46
2377 2422 1.203100 GCCTTATGATCCATGGGCCTT 60.203 52.381 13.02 5.04 37.75 4.35
2378 2423 0.407139 GCCTTATGATCCATGGGCCT 59.593 55.000 13.02 0.00 37.75 5.19
2379 2424 2.967270 GCCTTATGATCCATGGGCC 58.033 57.895 13.02 0.00 37.75 5.80
2380 2425 0.613012 GGGCCTTATGATCCATGGGC 60.613 60.000 13.02 4.21 40.50 5.36
2381 2426 0.322816 CGGGCCTTATGATCCATGGG 60.323 60.000 13.02 0.00 0.00 4.00
2382 2427 0.962356 GCGGGCCTTATGATCCATGG 60.962 60.000 4.97 4.97 0.00 3.66
2383 2428 0.250858 TGCGGGCCTTATGATCCATG 60.251 55.000 0.84 0.00 0.00 3.66
2384 2429 0.478072 TTGCGGGCCTTATGATCCAT 59.522 50.000 0.84 0.00 0.00 3.41
2385 2430 0.179020 CTTGCGGGCCTTATGATCCA 60.179 55.000 0.84 0.00 0.00 3.41
2386 2431 0.108585 TCTTGCGGGCCTTATGATCC 59.891 55.000 0.84 0.00 0.00 3.36
2387 2432 1.517242 CTCTTGCGGGCCTTATGATC 58.483 55.000 0.84 0.00 0.00 2.92
2388 2433 0.109342 CCTCTTGCGGGCCTTATGAT 59.891 55.000 0.84 0.00 0.00 2.45
2389 2434 1.526887 CCTCTTGCGGGCCTTATGA 59.473 57.895 0.84 0.00 0.00 2.15
2390 2435 2.189499 GCCTCTTGCGGGCCTTATG 61.189 63.158 0.84 0.00 43.49 1.90
2391 2436 2.193248 GCCTCTTGCGGGCCTTAT 59.807 61.111 0.84 0.00 43.49 1.73
2398 2443 2.550699 TAACCATGGGCCTCTTGCGG 62.551 60.000 18.09 0.00 42.61 5.69
2399 2444 1.077787 TAACCATGGGCCTCTTGCG 60.078 57.895 18.09 0.00 42.61 4.85
2400 2445 0.323360 TGTAACCATGGGCCTCTTGC 60.323 55.000 18.09 4.93 40.16 4.01
2401 2446 1.818674 GTTGTAACCATGGGCCTCTTG 59.181 52.381 18.09 1.30 0.00 3.02
2402 2447 1.427368 TGTTGTAACCATGGGCCTCTT 59.573 47.619 18.09 2.98 0.00 2.85
2403 2448 1.004745 CTGTTGTAACCATGGGCCTCT 59.995 52.381 18.09 0.00 0.00 3.69
2404 2449 1.271926 ACTGTTGTAACCATGGGCCTC 60.272 52.381 18.09 4.18 0.00 4.70
2405 2450 0.777446 ACTGTTGTAACCATGGGCCT 59.223 50.000 18.09 2.34 0.00 5.19
2406 2451 1.544246 GAACTGTTGTAACCATGGGCC 59.456 52.381 18.09 0.00 0.00 5.80
2407 2452 1.199097 CGAACTGTTGTAACCATGGGC 59.801 52.381 18.09 6.49 0.00 5.36
2408 2453 2.225491 CACGAACTGTTGTAACCATGGG 59.775 50.000 18.09 0.00 0.00 4.00
2409 2454 2.875933 ACACGAACTGTTGTAACCATGG 59.124 45.455 11.19 11.19 0.00 3.66
2410 2455 3.311322 ACACACGAACTGTTGTAACCATG 59.689 43.478 0.00 0.00 0.00 3.66
2411 2456 3.537580 ACACACGAACTGTTGTAACCAT 58.462 40.909 0.00 0.00 0.00 3.55
2412 2457 2.975266 ACACACGAACTGTTGTAACCA 58.025 42.857 0.00 0.00 0.00 3.67
2413 2458 3.676540 CAACACACGAACTGTTGTAACC 58.323 45.455 0.00 0.00 42.37 2.85
2414 2459 3.095738 GCAACACACGAACTGTTGTAAC 58.904 45.455 18.81 6.04 46.88 2.50
2415 2460 2.096174 GGCAACACACGAACTGTTGTAA 59.904 45.455 18.81 0.00 46.88 2.41
2416 2461 1.666700 GGCAACACACGAACTGTTGTA 59.333 47.619 18.81 0.00 46.88 2.41
2417 2462 0.450184 GGCAACACACGAACTGTTGT 59.550 50.000 18.81 0.00 46.88 3.32
2419 2464 2.861364 TGGCAACACACGAACTGTT 58.139 47.368 0.00 0.00 46.17 3.16
2420 2465 4.627788 TGGCAACACACGAACTGT 57.372 50.000 0.00 0.00 46.17 3.55
2435 2480 6.098124 TGGAAACTAGGCCAAAATAATCATGG 59.902 38.462 5.01 0.00 37.29 3.66
2436 2481 7.111247 TGGAAACTAGGCCAAAATAATCATG 57.889 36.000 5.01 0.00 0.00 3.07
2437 2482 7.732222 TTGGAAACTAGGCCAAAATAATCAT 57.268 32.000 5.01 0.00 40.96 2.45
2446 2491 5.399113 ACCTATTTTTGGAAACTAGGCCAA 58.601 37.500 5.01 9.18 42.11 4.52
2447 2492 5.005628 ACCTATTTTTGGAAACTAGGCCA 57.994 39.130 5.01 0.00 33.71 5.36
2448 2493 5.995565 AACCTATTTTTGGAAACTAGGCC 57.004 39.130 13.56 0.00 33.71 5.19
2449 2494 7.979537 CCAATAACCTATTTTTGGAAACTAGGC 59.020 37.037 13.56 0.00 45.08 3.93
2450 2495 8.474831 CCCAATAACCTATTTTTGGAAACTAGG 58.525 37.037 12.57 12.57 45.08 3.02
2451 2496 8.474831 CCCCAATAACCTATTTTTGGAAACTAG 58.525 37.037 9.88 0.00 45.08 2.57
2452 2497 7.093245 GCCCCAATAACCTATTTTTGGAAACTA 60.093 37.037 9.88 0.00 45.08 2.24
2453 2498 6.296202 GCCCCAATAACCTATTTTTGGAAACT 60.296 38.462 9.88 0.00 45.08 2.66
2454 2499 5.878116 GCCCCAATAACCTATTTTTGGAAAC 59.122 40.000 9.88 0.00 45.08 2.78
2455 2500 5.045505 GGCCCCAATAACCTATTTTTGGAAA 60.046 40.000 9.88 0.00 45.08 3.13
2456 2501 4.471747 GGCCCCAATAACCTATTTTTGGAA 59.528 41.667 9.88 0.00 45.08 3.53
2457 2502 4.034410 GGCCCCAATAACCTATTTTTGGA 58.966 43.478 9.88 0.00 45.08 3.53
2458 2503 3.777522 TGGCCCCAATAACCTATTTTTGG 59.222 43.478 0.00 3.15 43.10 3.28
2459 2504 4.469586 AGTGGCCCCAATAACCTATTTTTG 59.530 41.667 0.00 0.00 0.00 2.44
2460 2505 4.694512 AGTGGCCCCAATAACCTATTTTT 58.305 39.130 0.00 0.00 0.00 1.94
2461 2506 4.346478 AGTGGCCCCAATAACCTATTTT 57.654 40.909 0.00 0.00 0.00 1.82
2462 2507 4.729881 TCTAGTGGCCCCAATAACCTATTT 59.270 41.667 0.00 0.00 0.00 1.40
2463 2508 4.312487 TCTAGTGGCCCCAATAACCTATT 58.688 43.478 0.00 0.00 0.00 1.73
2464 2509 3.949430 TCTAGTGGCCCCAATAACCTAT 58.051 45.455 0.00 0.00 0.00 2.57
2465 2510 3.424724 TCTAGTGGCCCCAATAACCTA 57.575 47.619 0.00 0.00 0.00 3.08
2466 2511 2.280308 TCTAGTGGCCCCAATAACCT 57.720 50.000 0.00 0.00 0.00 3.50
2467 2512 3.375647 TTTCTAGTGGCCCCAATAACC 57.624 47.619 0.00 0.00 0.00 2.85
2468 2513 4.525100 TGTTTTTCTAGTGGCCCCAATAAC 59.475 41.667 0.00 0.00 0.00 1.89
2469 2514 4.525100 GTGTTTTTCTAGTGGCCCCAATAA 59.475 41.667 0.00 0.00 0.00 1.40
2470 2515 4.083565 GTGTTTTTCTAGTGGCCCCAATA 58.916 43.478 0.00 0.00 0.00 1.90
2471 2516 2.897326 GTGTTTTTCTAGTGGCCCCAAT 59.103 45.455 0.00 0.00 0.00 3.16
2472 2517 2.312390 GTGTTTTTCTAGTGGCCCCAA 58.688 47.619 0.00 0.00 0.00 4.12
2473 2518 1.215673 TGTGTTTTTCTAGTGGCCCCA 59.784 47.619 0.00 0.00 0.00 4.96
2474 2519 1.886542 CTGTGTTTTTCTAGTGGCCCC 59.113 52.381 0.00 0.00 0.00 5.80
2475 2520 2.858745 TCTGTGTTTTTCTAGTGGCCC 58.141 47.619 0.00 0.00 0.00 5.80
2476 2521 4.911514 TTTCTGTGTTTTTCTAGTGGCC 57.088 40.909 0.00 0.00 0.00 5.36
2477 2522 6.560711 TCTTTTTCTGTGTTTTTCTAGTGGC 58.439 36.000 0.00 0.00 0.00 5.01
2478 2523 8.244113 AGTTCTTTTTCTGTGTTTTTCTAGTGG 58.756 33.333 0.00 0.00 0.00 4.00
2479 2524 9.065871 CAGTTCTTTTTCTGTGTTTTTCTAGTG 57.934 33.333 0.00 0.00 0.00 2.74
2480 2525 7.755373 GCAGTTCTTTTTCTGTGTTTTTCTAGT 59.245 33.333 0.00 0.00 34.57 2.57
2481 2526 7.754924 TGCAGTTCTTTTTCTGTGTTTTTCTAG 59.245 33.333 0.00 0.00 34.57 2.43
2482 2527 7.598278 TGCAGTTCTTTTTCTGTGTTTTTCTA 58.402 30.769 0.00 0.00 34.57 2.10
2483 2528 6.454795 TGCAGTTCTTTTTCTGTGTTTTTCT 58.545 32.000 0.00 0.00 34.57 2.52
2484 2529 6.366061 ACTGCAGTTCTTTTTCTGTGTTTTTC 59.634 34.615 15.25 0.00 34.57 2.29
2485 2530 6.146021 CACTGCAGTTCTTTTTCTGTGTTTTT 59.854 34.615 18.94 0.00 34.57 1.94
2486 2531 5.634859 CACTGCAGTTCTTTTTCTGTGTTTT 59.365 36.000 18.94 0.00 34.57 2.43
2487 2532 5.048083 TCACTGCAGTTCTTTTTCTGTGTTT 60.048 36.000 18.94 0.00 34.57 2.83
2488 2533 4.458989 TCACTGCAGTTCTTTTTCTGTGTT 59.541 37.500 18.94 0.00 34.57 3.32
2489 2534 4.009675 TCACTGCAGTTCTTTTTCTGTGT 58.990 39.130 18.94 0.00 34.57 3.72
2490 2535 4.095483 AGTCACTGCAGTTCTTTTTCTGTG 59.905 41.667 18.94 1.94 34.57 3.66
2491 2536 4.265073 AGTCACTGCAGTTCTTTTTCTGT 58.735 39.130 18.94 0.00 34.57 3.41
2492 2537 4.889832 AGTCACTGCAGTTCTTTTTCTG 57.110 40.909 18.94 2.36 35.12 3.02
2493 2538 5.428253 TGTAGTCACTGCAGTTCTTTTTCT 58.572 37.500 18.94 9.94 0.00 2.52
2494 2539 5.734855 TGTAGTCACTGCAGTTCTTTTTC 57.265 39.130 18.94 5.53 0.00 2.29
2495 2540 5.449177 GCTTGTAGTCACTGCAGTTCTTTTT 60.449 40.000 18.94 2.52 0.00 1.94
2496 2541 4.035675 GCTTGTAGTCACTGCAGTTCTTTT 59.964 41.667 18.94 4.01 0.00 2.27
2497 2542 3.561725 GCTTGTAGTCACTGCAGTTCTTT 59.438 43.478 18.94 5.89 0.00 2.52
2498 2543 3.134458 GCTTGTAGTCACTGCAGTTCTT 58.866 45.455 18.94 7.81 0.00 2.52
2499 2544 2.103094 TGCTTGTAGTCACTGCAGTTCT 59.897 45.455 18.94 19.87 33.35 3.01
2500 2545 2.483876 TGCTTGTAGTCACTGCAGTTC 58.516 47.619 18.94 13.49 33.35 3.01
2501 2546 2.620251 TGCTTGTAGTCACTGCAGTT 57.380 45.000 18.94 5.57 33.35 3.16
2502 2547 2.614057 GTTTGCTTGTAGTCACTGCAGT 59.386 45.455 15.25 15.25 36.64 4.40
2503 2548 2.613595 TGTTTGCTTGTAGTCACTGCAG 59.386 45.455 13.48 13.48 36.64 4.41
2504 2549 2.637947 TGTTTGCTTGTAGTCACTGCA 58.362 42.857 0.00 0.00 34.65 4.41
2505 2550 3.065371 AGTTGTTTGCTTGTAGTCACTGC 59.935 43.478 0.00 0.00 0.00 4.40
2506 2551 4.882671 AGTTGTTTGCTTGTAGTCACTG 57.117 40.909 0.00 0.00 0.00 3.66
2507 2552 6.373216 TGTTTAGTTGTTTGCTTGTAGTCACT 59.627 34.615 0.00 0.00 0.00 3.41
2508 2553 6.548171 TGTTTAGTTGTTTGCTTGTAGTCAC 58.452 36.000 0.00 0.00 0.00 3.67
2509 2554 6.745159 TGTTTAGTTGTTTGCTTGTAGTCA 57.255 33.333 0.00 0.00 0.00 3.41
2510 2555 7.428472 GTCTTGTTTAGTTGTTTGCTTGTAGTC 59.572 37.037 0.00 0.00 0.00 2.59
2511 2556 7.094549 TGTCTTGTTTAGTTGTTTGCTTGTAGT 60.095 33.333 0.00 0.00 0.00 2.73
2512 2557 7.247728 TGTCTTGTTTAGTTGTTTGCTTGTAG 58.752 34.615 0.00 0.00 0.00 2.74
2513 2558 7.147143 TGTCTTGTTTAGTTGTTTGCTTGTA 57.853 32.000 0.00 0.00 0.00 2.41
2514 2559 6.019779 TGTCTTGTTTAGTTGTTTGCTTGT 57.980 33.333 0.00 0.00 0.00 3.16
2515 2560 6.364706 TGTTGTCTTGTTTAGTTGTTTGCTTG 59.635 34.615 0.00 0.00 0.00 4.01
2516 2561 6.451393 TGTTGTCTTGTTTAGTTGTTTGCTT 58.549 32.000 0.00 0.00 0.00 3.91
2517 2562 6.019779 TGTTGTCTTGTTTAGTTGTTTGCT 57.980 33.333 0.00 0.00 0.00 3.91
2518 2563 6.183360 CCTTGTTGTCTTGTTTAGTTGTTTGC 60.183 38.462 0.00 0.00 0.00 3.68
2519 2564 7.087639 TCCTTGTTGTCTTGTTTAGTTGTTTG 58.912 34.615 0.00 0.00 0.00 2.93
2520 2565 7.222000 TCCTTGTTGTCTTGTTTAGTTGTTT 57.778 32.000 0.00 0.00 0.00 2.83
2521 2566 6.827586 TCCTTGTTGTCTTGTTTAGTTGTT 57.172 33.333 0.00 0.00 0.00 2.83
2522 2567 6.827586 TTCCTTGTTGTCTTGTTTAGTTGT 57.172 33.333 0.00 0.00 0.00 3.32
2523 2568 9.796120 TTATTTCCTTGTTGTCTTGTTTAGTTG 57.204 29.630 0.00 0.00 0.00 3.16
2529 2574 9.476202 GCTTATTTATTTCCTTGTTGTCTTGTT 57.524 29.630 0.00 0.00 0.00 2.83
2530 2575 8.637986 TGCTTATTTATTTCCTTGTTGTCTTGT 58.362 29.630 0.00 0.00 0.00 3.16
2531 2576 9.474920 TTGCTTATTTATTTCCTTGTTGTCTTG 57.525 29.630 0.00 0.00 0.00 3.02
2532 2577 9.696917 CTTGCTTATTTATTTCCTTGTTGTCTT 57.303 29.630 0.00 0.00 0.00 3.01
2533 2578 7.814587 GCTTGCTTATTTATTTCCTTGTTGTCT 59.185 33.333 0.00 0.00 0.00 3.41
2534 2579 7.598493 TGCTTGCTTATTTATTTCCTTGTTGTC 59.402 33.333 0.00 0.00 0.00 3.18
2535 2580 7.441017 TGCTTGCTTATTTATTTCCTTGTTGT 58.559 30.769 0.00 0.00 0.00 3.32
2536 2581 7.887996 TGCTTGCTTATTTATTTCCTTGTTG 57.112 32.000 0.00 0.00 0.00 3.33
2537 2582 9.506018 AATTGCTTGCTTATTTATTTCCTTGTT 57.494 25.926 0.00 0.00 0.00 2.83
2541 2586 9.301153 CGTTAATTGCTTGCTTATTTATTTCCT 57.699 29.630 0.00 0.00 0.00 3.36
2542 2587 8.055986 GCGTTAATTGCTTGCTTATTTATTTCC 58.944 33.333 0.00 0.00 0.00 3.13
2543 2588 8.807581 AGCGTTAATTGCTTGCTTATTTATTTC 58.192 29.630 0.00 0.00 40.48 2.17
2544 2589 8.702163 AGCGTTAATTGCTTGCTTATTTATTT 57.298 26.923 0.00 0.00 40.48 1.40
2545 2590 9.450807 CTAGCGTTAATTGCTTGCTTATTTATT 57.549 29.630 10.01 0.00 43.71 1.40
2546 2591 8.836413 TCTAGCGTTAATTGCTTGCTTATTTAT 58.164 29.630 10.01 0.00 43.71 1.40
2547 2592 8.120465 GTCTAGCGTTAATTGCTTGCTTATTTA 58.880 33.333 10.01 0.00 43.71 1.40
2548 2593 6.967199 GTCTAGCGTTAATTGCTTGCTTATTT 59.033 34.615 10.01 0.00 43.71 1.40
2549 2594 6.316390 AGTCTAGCGTTAATTGCTTGCTTATT 59.684 34.615 10.01 0.00 43.71 1.40
2550 2595 5.817816 AGTCTAGCGTTAATTGCTTGCTTAT 59.182 36.000 10.01 0.00 43.71 1.73
2551 2596 5.175859 AGTCTAGCGTTAATTGCTTGCTTA 58.824 37.500 10.01 0.00 43.71 3.09
2552 2597 4.003648 AGTCTAGCGTTAATTGCTTGCTT 58.996 39.130 10.01 0.00 43.71 3.91
2553 2598 3.600388 AGTCTAGCGTTAATTGCTTGCT 58.400 40.909 10.01 7.48 43.71 3.91
2554 2599 5.659048 ATAGTCTAGCGTTAATTGCTTGC 57.341 39.130 10.01 5.79 43.71 4.01
2555 2600 7.564988 GGTAATAGTCTAGCGTTAATTGCTTG 58.435 38.462 10.01 8.62 43.71 4.01
2556 2601 6.420008 CGGTAATAGTCTAGCGTTAATTGCTT 59.580 38.462 10.01 0.00 43.71 3.91
2557 2602 5.919141 CGGTAATAGTCTAGCGTTAATTGCT 59.081 40.000 9.70 9.70 46.29 3.91
2558 2603 5.388164 GCGGTAATAGTCTAGCGTTAATTGC 60.388 44.000 4.42 0.00 43.06 3.56
2559 2604 5.919141 AGCGGTAATAGTCTAGCGTTAATTG 59.081 40.000 4.42 0.00 43.06 2.32
2560 2605 6.081872 AGCGGTAATAGTCTAGCGTTAATT 57.918 37.500 4.42 0.00 43.06 1.40
2561 2606 5.702349 AGCGGTAATAGTCTAGCGTTAAT 57.298 39.130 4.42 0.00 43.06 1.40
2562 2607 6.808008 ATAGCGGTAATAGTCTAGCGTTAA 57.192 37.500 0.00 0.00 43.06 2.01
2563 2608 6.808008 AATAGCGGTAATAGTCTAGCGTTA 57.192 37.500 0.00 3.29 43.06 3.18
2564 2609 5.702349 AATAGCGGTAATAGTCTAGCGTT 57.298 39.130 0.00 1.24 43.06 4.84
2565 2610 5.702670 TGTAATAGCGGTAATAGTCTAGCGT 59.297 40.000 0.00 0.00 43.06 5.07
2566 2611 6.020372 GTGTAATAGCGGTAATAGTCTAGCG 58.980 44.000 0.00 0.00 43.77 4.26
2567 2612 6.906659 TGTGTAATAGCGGTAATAGTCTAGC 58.093 40.000 0.00 0.00 0.00 3.42
2575 2620 9.595823 GGATGTAATATGTGTAATAGCGGTAAT 57.404 33.333 0.00 0.00 0.00 1.89
2576 2621 8.586744 TGGATGTAATATGTGTAATAGCGGTAA 58.413 33.333 0.00 0.00 0.00 2.85
2577 2622 8.030692 GTGGATGTAATATGTGTAATAGCGGTA 58.969 37.037 0.00 0.00 0.00 4.02
2578 2623 6.872020 GTGGATGTAATATGTGTAATAGCGGT 59.128 38.462 0.00 0.00 0.00 5.68
2579 2624 7.097192 AGTGGATGTAATATGTGTAATAGCGG 58.903 38.462 0.00 0.00 0.00 5.52
2580 2625 9.290483 CTAGTGGATGTAATATGTGTAATAGCG 57.710 37.037 0.00 0.00 0.00 4.26
2581 2626 9.587772 CCTAGTGGATGTAATATGTGTAATAGC 57.412 37.037 0.00 0.00 34.57 2.97
2582 2627 9.587772 GCCTAGTGGATGTAATATGTGTAATAG 57.412 37.037 0.00 0.00 34.57 1.73
2583 2628 9.095700 TGCCTAGTGGATGTAATATGTGTAATA 57.904 33.333 0.00 0.00 34.57 0.98
2584 2629 7.973402 TGCCTAGTGGATGTAATATGTGTAAT 58.027 34.615 0.00 0.00 34.57 1.89
2585 2630 7.368198 TGCCTAGTGGATGTAATATGTGTAA 57.632 36.000 0.00 0.00 34.57 2.41
2586 2631 6.987403 TGCCTAGTGGATGTAATATGTGTA 57.013 37.500 0.00 0.00 34.57 2.90
2587 2632 5.887214 TGCCTAGTGGATGTAATATGTGT 57.113 39.130 0.00 0.00 34.57 3.72
2588 2633 6.466812 TGATGCCTAGTGGATGTAATATGTG 58.533 40.000 0.00 0.00 34.57 3.21
2589 2634 6.686484 TGATGCCTAGTGGATGTAATATGT 57.314 37.500 0.00 0.00 34.57 2.29
2590 2635 7.663081 ACTTTGATGCCTAGTGGATGTAATATG 59.337 37.037 0.00 0.00 34.57 1.78
2591 2636 7.749666 ACTTTGATGCCTAGTGGATGTAATAT 58.250 34.615 0.00 0.00 34.57 1.28
2592 2637 7.136822 ACTTTGATGCCTAGTGGATGTAATA 57.863 36.000 0.00 0.00 34.57 0.98
2593 2638 6.006275 ACTTTGATGCCTAGTGGATGTAAT 57.994 37.500 0.00 0.00 34.57 1.89
2594 2639 5.435686 ACTTTGATGCCTAGTGGATGTAA 57.564 39.130 0.00 0.00 34.57 2.41
2595 2640 5.428253 GAACTTTGATGCCTAGTGGATGTA 58.572 41.667 0.00 0.00 34.57 2.29
2596 2641 4.265073 GAACTTTGATGCCTAGTGGATGT 58.735 43.478 0.00 0.00 34.57 3.06
2597 2642 3.310774 CGAACTTTGATGCCTAGTGGATG 59.689 47.826 0.00 0.00 34.57 3.51
2598 2643 3.535561 CGAACTTTGATGCCTAGTGGAT 58.464 45.455 0.00 0.00 34.57 3.41
2599 2644 2.935238 GCGAACTTTGATGCCTAGTGGA 60.935 50.000 0.00 0.00 34.57 4.02
2600 2645 1.398390 GCGAACTTTGATGCCTAGTGG 59.602 52.381 0.00 0.00 0.00 4.00
2601 2646 1.398390 GGCGAACTTTGATGCCTAGTG 59.602 52.381 0.00 0.00 44.16 2.74
2602 2647 1.739067 GGCGAACTTTGATGCCTAGT 58.261 50.000 0.00 0.00 44.16 2.57
2607 2652 0.109597 CTGGTGGCGAACTTTGATGC 60.110 55.000 0.00 0.00 0.00 3.91
2608 2653 1.069022 CACTGGTGGCGAACTTTGATG 60.069 52.381 0.00 0.00 0.00 3.07
2609 2654 1.238439 CACTGGTGGCGAACTTTGAT 58.762 50.000 0.00 0.00 0.00 2.57
2610 2655 1.444119 GCACTGGTGGCGAACTTTGA 61.444 55.000 2.84 0.00 0.00 2.69
2611 2656 1.008538 GCACTGGTGGCGAACTTTG 60.009 57.895 2.84 0.00 0.00 2.77
2612 2657 1.034838 TTGCACTGGTGGCGAACTTT 61.035 50.000 2.84 0.00 0.00 2.66
2613 2658 1.034838 TTTGCACTGGTGGCGAACTT 61.035 50.000 2.84 0.00 29.89 2.66
2614 2659 0.823356 ATTTGCACTGGTGGCGAACT 60.823 50.000 2.84 0.00 37.46 3.01
2615 2660 0.878416 TATTTGCACTGGTGGCGAAC 59.122 50.000 2.84 0.00 37.46 3.95
2616 2661 1.832883 ATATTTGCACTGGTGGCGAA 58.167 45.000 2.84 0.00 38.89 4.70
2617 2662 2.560504 CTATATTTGCACTGGTGGCGA 58.439 47.619 2.84 0.00 0.00 5.54
2618 2663 1.603802 CCTATATTTGCACTGGTGGCG 59.396 52.381 2.84 0.00 0.00 5.69
2619 2664 1.956477 CCCTATATTTGCACTGGTGGC 59.044 52.381 2.84 0.00 0.00 5.01
2620 2665 3.576078 TCCCTATATTTGCACTGGTGG 57.424 47.619 2.84 0.00 0.00 4.61
2621 2666 4.269183 TGTTCCCTATATTTGCACTGGTG 58.731 43.478 0.00 0.00 0.00 4.17
2622 2667 4.584638 TGTTCCCTATATTTGCACTGGT 57.415 40.909 0.00 0.00 0.00 4.00
2623 2668 5.679638 GCTTTGTTCCCTATATTTGCACTGG 60.680 44.000 0.00 0.00 0.00 4.00
2624 2669 5.105797 TGCTTTGTTCCCTATATTTGCACTG 60.106 40.000 0.00 0.00 0.00 3.66
2625 2670 5.016173 TGCTTTGTTCCCTATATTTGCACT 58.984 37.500 0.00 0.00 0.00 4.40
2626 2671 5.323371 TGCTTTGTTCCCTATATTTGCAC 57.677 39.130 0.00 0.00 0.00 4.57
2627 2672 4.142182 GCTGCTTTGTTCCCTATATTTGCA 60.142 41.667 0.00 0.00 0.00 4.08
2628 2673 4.142182 TGCTGCTTTGTTCCCTATATTTGC 60.142 41.667 0.00 0.00 0.00 3.68
2629 2674 5.581126 TGCTGCTTTGTTCCCTATATTTG 57.419 39.130 0.00 0.00 0.00 2.32
2630 2675 8.482852 AATATGCTGCTTTGTTCCCTATATTT 57.517 30.769 0.00 0.00 0.00 1.40
2631 2676 9.014297 GTAATATGCTGCTTTGTTCCCTATATT 57.986 33.333 0.00 1.06 0.00 1.28
2632 2677 8.163408 TGTAATATGCTGCTTTGTTCCCTATAT 58.837 33.333 0.00 0.00 0.00 0.86
2633 2678 7.513856 TGTAATATGCTGCTTTGTTCCCTATA 58.486 34.615 0.00 0.00 0.00 1.31
2634 2679 6.364701 TGTAATATGCTGCTTTGTTCCCTAT 58.635 36.000 0.00 0.00 0.00 2.57
2635 2680 5.750524 TGTAATATGCTGCTTTGTTCCCTA 58.249 37.500 0.00 0.00 0.00 3.53
2636 2681 4.599041 TGTAATATGCTGCTTTGTTCCCT 58.401 39.130 0.00 0.00 0.00 4.20
2637 2682 4.981806 TGTAATATGCTGCTTTGTTCCC 57.018 40.909 0.00 0.00 0.00 3.97
2638 2683 6.912591 GTGTATGTAATATGCTGCTTTGTTCC 59.087 38.462 0.00 0.00 0.00 3.62
2639 2684 7.641411 CAGTGTATGTAATATGCTGCTTTGTTC 59.359 37.037 0.00 0.00 30.74 3.18
2640 2685 7.415541 CCAGTGTATGTAATATGCTGCTTTGTT 60.416 37.037 0.00 0.00 34.36 2.83
2641 2686 6.038603 CCAGTGTATGTAATATGCTGCTTTGT 59.961 38.462 0.00 0.00 34.36 2.83
2642 2687 6.432936 CCAGTGTATGTAATATGCTGCTTTG 58.567 40.000 0.00 0.00 34.36 2.77
2643 2688 5.009010 GCCAGTGTATGTAATATGCTGCTTT 59.991 40.000 0.00 0.00 34.36 3.51
2644 2689 4.516698 GCCAGTGTATGTAATATGCTGCTT 59.483 41.667 0.00 0.00 34.36 3.91
2645 2690 4.067896 GCCAGTGTATGTAATATGCTGCT 58.932 43.478 0.00 0.00 34.36 4.24
2646 2691 3.189287 GGCCAGTGTATGTAATATGCTGC 59.811 47.826 0.00 0.00 34.36 5.25
2647 2692 3.433274 CGGCCAGTGTATGTAATATGCTG 59.567 47.826 2.24 0.00 34.99 4.41
2648 2693 3.071023 ACGGCCAGTGTATGTAATATGCT 59.929 43.478 2.24 0.00 0.00 3.79
2649 2694 3.399330 ACGGCCAGTGTATGTAATATGC 58.601 45.455 2.24 0.00 0.00 3.14
2650 2695 4.627058 TGACGGCCAGTGTATGTAATATG 58.373 43.478 2.24 0.00 0.00 1.78
2651 2696 4.948341 TGACGGCCAGTGTATGTAATAT 57.052 40.909 2.24 0.00 0.00 1.28
2652 2697 4.739587 TTGACGGCCAGTGTATGTAATA 57.260 40.909 2.24 0.00 0.00 0.98
2653 2698 3.620427 TTGACGGCCAGTGTATGTAAT 57.380 42.857 2.24 0.00 0.00 1.89
2654 2699 3.404224 TTTGACGGCCAGTGTATGTAA 57.596 42.857 2.24 0.00 0.00 2.41
2655 2700 3.404224 TTTTGACGGCCAGTGTATGTA 57.596 42.857 2.24 0.00 0.00 2.29
2656 2701 2.264005 TTTTGACGGCCAGTGTATGT 57.736 45.000 2.24 0.00 0.00 2.29
2657 2702 3.500982 CAATTTTGACGGCCAGTGTATG 58.499 45.455 2.24 0.00 0.00 2.39
2658 2703 2.491693 CCAATTTTGACGGCCAGTGTAT 59.508 45.455 2.24 0.00 0.00 2.29
2659 2704 1.883275 CCAATTTTGACGGCCAGTGTA 59.117 47.619 2.24 0.00 0.00 2.90
2660 2705 0.673437 CCAATTTTGACGGCCAGTGT 59.327 50.000 2.24 0.00 0.00 3.55
2661 2706 0.667184 GCCAATTTTGACGGCCAGTG 60.667 55.000 2.24 0.00 40.07 3.66
2662 2707 1.665442 GCCAATTTTGACGGCCAGT 59.335 52.632 2.24 0.72 40.07 4.00
2663 2708 4.576993 GCCAATTTTGACGGCCAG 57.423 55.556 2.24 0.00 40.07 4.85
2666 2711 1.374125 GGTGGCCAATTTTGACGGC 60.374 57.895 7.24 0.00 45.47 5.68
2667 2712 0.038343 CTGGTGGCCAATTTTGACGG 60.038 55.000 7.24 0.00 30.80 4.79
2668 2713 0.673437 ACTGGTGGCCAATTTTGACG 59.327 50.000 7.24 0.00 30.80 4.35
2669 2714 1.873486 GCACTGGTGGCCAATTTTGAC 60.873 52.381 7.24 0.00 30.80 3.18
2670 2715 0.392336 GCACTGGTGGCCAATTTTGA 59.608 50.000 7.24 0.00 30.80 2.69
2671 2716 0.106335 TGCACTGGTGGCCAATTTTG 59.894 50.000 7.24 3.88 30.80 2.44
2672 2717 0.835941 TTGCACTGGTGGCCAATTTT 59.164 45.000 7.24 0.00 30.80 1.82
2673 2718 0.835941 TTTGCACTGGTGGCCAATTT 59.164 45.000 7.24 0.00 30.80 1.82
2674 2719 1.058284 ATTTGCACTGGTGGCCAATT 58.942 45.000 7.24 0.00 30.80 2.32
2675 2720 1.935799 TATTTGCACTGGTGGCCAAT 58.064 45.000 7.24 0.00 30.80 3.16
2676 2721 1.709578 TTATTTGCACTGGTGGCCAA 58.290 45.000 7.24 0.00 30.80 4.52
2677 2722 1.709578 TTTATTTGCACTGGTGGCCA 58.290 45.000 0.00 0.00 0.00 5.36
2678 2723 2.620242 CATTTATTTGCACTGGTGGCC 58.380 47.619 0.00 0.00 0.00 5.36
2679 2724 2.001872 GCATTTATTTGCACTGGTGGC 58.998 47.619 2.84 0.00 42.31 5.01
2680 2725 2.261345 CGCATTTATTTGCACTGGTGG 58.739 47.619 2.84 0.00 42.91 4.61
2681 2726 2.261345 CCGCATTTATTTGCACTGGTG 58.739 47.619 0.00 0.00 42.91 4.17
2682 2727 1.404047 GCCGCATTTATTTGCACTGGT 60.404 47.619 0.00 0.00 42.91 4.00
2683 2728 1.280066 GCCGCATTTATTTGCACTGG 58.720 50.000 0.00 0.00 42.91 4.00
2684 2729 1.921887 CTGCCGCATTTATTTGCACTG 59.078 47.619 0.00 0.00 42.91 3.66
2685 2730 1.736696 GCTGCCGCATTTATTTGCACT 60.737 47.619 0.00 0.00 42.91 4.40
2686 2731 0.646895 GCTGCCGCATTTATTTGCAC 59.353 50.000 0.00 0.00 42.91 4.57
2687 2732 0.245813 TGCTGCCGCATTTATTTGCA 59.754 45.000 0.00 0.00 42.25 4.08
2688 2733 3.047752 TGCTGCCGCATTTATTTGC 57.952 47.368 0.00 0.00 42.25 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.