Multiple sequence alignment - TraesCS2A01G172300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G172300 chr2A 100.000 3227 0 0 1 3227 128482176 128485402 0.000000e+00 5960
1 TraesCS2A01G172300 chr2A 96.913 1166 33 3 2064 3227 419178724 419177560 0.000000e+00 1951
2 TraesCS2A01G172300 chr6A 97.547 1712 39 2 356 2064 561454825 561456536 0.000000e+00 2926
3 TraesCS2A01G172300 chr6A 97.019 1711 46 3 356 2064 561585811 561584104 0.000000e+00 2872
4 TraesCS2A01G172300 chr6A 96.281 1721 52 4 356 2064 561599045 561597325 0.000000e+00 2813
5 TraesCS2A01G172300 chr6A 97.429 1400 34 2 353 1750 16669145 16670544 0.000000e+00 2385
6 TraesCS2A01G172300 chr7A 97.136 1711 45 3 357 2064 16155319 16153610 0.000000e+00 2885
7 TraesCS2A01G172300 chr7A 95.733 1711 62 9 358 2064 488151252 488149549 0.000000e+00 2745
8 TraesCS2A01G172300 chr7A 95.377 1709 54 6 358 2064 488486095 488484410 0.000000e+00 2695
9 TraesCS2A01G172300 chr7A 96.835 1169 34 3 2061 3227 375446676 375445509 0.000000e+00 1951
10 TraesCS2A01G172300 chrUn 94.626 1712 73 5 355 2064 10231185 10229491 0.000000e+00 2634
11 TraesCS2A01G172300 chr1D 94.794 1383 49 6 680 2061 416512216 416513576 0.000000e+00 2134
12 TraesCS2A01G172300 chr4A 96.996 1165 32 3 2065 3227 7773606 7772443 0.000000e+00 1954
13 TraesCS2A01G172300 chr4A 96.824 1165 34 3 2065 3227 28268644 28267481 0.000000e+00 1943
14 TraesCS2A01G172300 chr5A 96.993 1164 29 5 2067 3227 564231777 564232937 0.000000e+00 1951
15 TraesCS2A01G172300 chr5A 96.824 1165 34 3 2065 3227 564224861 564226024 0.000000e+00 1943
16 TraesCS2A01G172300 chr3A 96.910 1165 33 3 2065 3227 353562883 353564046 0.000000e+00 1949
17 TraesCS2A01G172300 chr3A 96.824 1165 34 3 2065 3227 705357548 705356385 0.000000e+00 1943
18 TraesCS2A01G172300 chr3A 96.738 1165 35 3 2065 3227 594604271 594603108 0.000000e+00 1938
19 TraesCS2A01G172300 chr1A 95.675 1133 47 2 357 1488 565658026 565656895 0.000000e+00 1820
20 TraesCS2A01G172300 chr2B 86.957 299 24 10 64 353 176293067 176293359 4.020000e-84 322


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G172300 chr2A 128482176 128485402 3226 False 5960 5960 100.000 1 3227 1 chr2A.!!$F1 3226
1 TraesCS2A01G172300 chr2A 419177560 419178724 1164 True 1951 1951 96.913 2064 3227 1 chr2A.!!$R1 1163
2 TraesCS2A01G172300 chr6A 561454825 561456536 1711 False 2926 2926 97.547 356 2064 1 chr6A.!!$F2 1708
3 TraesCS2A01G172300 chr6A 561584104 561585811 1707 True 2872 2872 97.019 356 2064 1 chr6A.!!$R1 1708
4 TraesCS2A01G172300 chr6A 561597325 561599045 1720 True 2813 2813 96.281 356 2064 1 chr6A.!!$R2 1708
5 TraesCS2A01G172300 chr6A 16669145 16670544 1399 False 2385 2385 97.429 353 1750 1 chr6A.!!$F1 1397
6 TraesCS2A01G172300 chr7A 16153610 16155319 1709 True 2885 2885 97.136 357 2064 1 chr7A.!!$R1 1707
7 TraesCS2A01G172300 chr7A 488149549 488151252 1703 True 2745 2745 95.733 358 2064 1 chr7A.!!$R3 1706
8 TraesCS2A01G172300 chr7A 488484410 488486095 1685 True 2695 2695 95.377 358 2064 1 chr7A.!!$R4 1706
9 TraesCS2A01G172300 chr7A 375445509 375446676 1167 True 1951 1951 96.835 2061 3227 1 chr7A.!!$R2 1166
10 TraesCS2A01G172300 chrUn 10229491 10231185 1694 True 2634 2634 94.626 355 2064 1 chrUn.!!$R1 1709
11 TraesCS2A01G172300 chr1D 416512216 416513576 1360 False 2134 2134 94.794 680 2061 1 chr1D.!!$F1 1381
12 TraesCS2A01G172300 chr4A 7772443 7773606 1163 True 1954 1954 96.996 2065 3227 1 chr4A.!!$R1 1162
13 TraesCS2A01G172300 chr4A 28267481 28268644 1163 True 1943 1943 96.824 2065 3227 1 chr4A.!!$R2 1162
14 TraesCS2A01G172300 chr5A 564231777 564232937 1160 False 1951 1951 96.993 2067 3227 1 chr5A.!!$F2 1160
15 TraesCS2A01G172300 chr5A 564224861 564226024 1163 False 1943 1943 96.824 2065 3227 1 chr5A.!!$F1 1162
16 TraesCS2A01G172300 chr3A 353562883 353564046 1163 False 1949 1949 96.910 2065 3227 1 chr3A.!!$F1 1162
17 TraesCS2A01G172300 chr3A 705356385 705357548 1163 True 1943 1943 96.824 2065 3227 1 chr3A.!!$R2 1162
18 TraesCS2A01G172300 chr3A 594603108 594604271 1163 True 1938 1938 96.738 2065 3227 1 chr3A.!!$R1 1162
19 TraesCS2A01G172300 chr1A 565656895 565658026 1131 True 1820 1820 95.675 357 1488 1 chr1A.!!$R1 1131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.040058 ATCAAACCCATGCAGCCAGA 59.960 50.0 0.0 0.0 0.0 3.86 F
328 329 0.112995 AAACCCATGCAGCCAGAGAA 59.887 50.0 0.0 0.0 0.0 2.87 F
329 330 0.112995 AACCCATGCAGCCAGAGAAA 59.887 50.0 0.0 0.0 0.0 2.52 F
330 331 0.323178 ACCCATGCAGCCAGAGAAAG 60.323 55.0 0.0 0.0 0.0 2.62 F
340 341 0.392729 CCAGAGAAAGGGCTGCTGAG 60.393 60.0 0.0 0.0 0.0 3.35 F
341 342 0.392729 CAGAGAAAGGGCTGCTGAGG 60.393 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1751 1.229209 TCCACACCCCTCTCCTGTC 60.229 63.158 0.0 0.0 0.00 3.51 R
1732 1752 1.229336 CTCCACACCCCTCTCCTGT 60.229 63.158 0.0 0.0 0.00 4.00 R
1847 1869 5.279056 CCTGTAGTTTCTTCTTCTCGTCCTT 60.279 44.000 0.0 0.0 0.00 3.36 R
1852 1877 5.630661 TCTCCTGTAGTTTCTTCTTCTCG 57.369 43.478 0.0 0.0 0.00 4.04 R
2159 2184 9.679661 TGTATTCACACATGTATTATGTTTCCT 57.320 29.630 0.0 0.0 0.00 3.36 R
2420 2446 1.043022 AGTGTTCCTCCGGTAAACGT 58.957 50.000 0.0 0.0 42.24 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.017669 CCGTATGAAGTAAATTATATCTACGGC 57.982 37.037 16.01 0.00 37.88 5.68
31 32 9.563898 CGTATGAAGTAAATTATATCTACGGCA 57.436 33.333 0.00 0.00 0.00 5.69
34 35 9.998106 ATGAAGTAAATTATATCTACGGCACTT 57.002 29.630 0.00 0.00 0.00 3.16
35 36 9.256477 TGAAGTAAATTATATCTACGGCACTTG 57.744 33.333 0.00 0.00 0.00 3.16
36 37 9.472361 GAAGTAAATTATATCTACGGCACTTGA 57.528 33.333 0.00 0.00 0.00 3.02
37 38 9.826574 AAGTAAATTATATCTACGGCACTTGAA 57.173 29.630 0.00 0.00 0.00 2.69
38 39 9.998106 AGTAAATTATATCTACGGCACTTGAAT 57.002 29.630 0.00 0.00 0.00 2.57
45 46 8.764524 ATATCTACGGCACTTGAATTTAGATC 57.235 34.615 0.00 0.00 0.00 2.75
46 47 6.222038 TCTACGGCACTTGAATTTAGATCT 57.778 37.500 0.00 0.00 0.00 2.75
47 48 7.342769 TCTACGGCACTTGAATTTAGATCTA 57.657 36.000 0.00 0.00 0.00 1.98
48 49 7.426410 TCTACGGCACTTGAATTTAGATCTAG 58.574 38.462 2.02 0.00 0.00 2.43
49 50 6.222038 ACGGCACTTGAATTTAGATCTAGA 57.778 37.500 2.02 0.00 0.00 2.43
50 51 6.821388 ACGGCACTTGAATTTAGATCTAGAT 58.179 36.000 4.47 4.47 0.00 1.98
51 52 7.275920 ACGGCACTTGAATTTAGATCTAGATT 58.724 34.615 16.28 16.28 0.00 2.40
52 53 7.770897 ACGGCACTTGAATTTAGATCTAGATTT 59.229 33.333 17.13 3.59 0.00 2.17
53 54 9.261180 CGGCACTTGAATTTAGATCTAGATTTA 57.739 33.333 17.13 11.81 0.00 1.40
109 110 8.567285 ACTATAAGAAAAATCAAGTGTGGGAG 57.433 34.615 0.00 0.00 0.00 4.30
110 111 6.840780 ATAAGAAAAATCAAGTGTGGGAGG 57.159 37.500 0.00 0.00 0.00 4.30
111 112 4.184649 AGAAAAATCAAGTGTGGGAGGT 57.815 40.909 0.00 0.00 0.00 3.85
112 113 4.145052 AGAAAAATCAAGTGTGGGAGGTC 58.855 43.478 0.00 0.00 0.00 3.85
113 114 3.593442 AAAATCAAGTGTGGGAGGTCA 57.407 42.857 0.00 0.00 0.00 4.02
114 115 2.568623 AATCAAGTGTGGGAGGTCAC 57.431 50.000 0.00 0.00 38.09 3.67
115 116 1.434188 ATCAAGTGTGGGAGGTCACA 58.566 50.000 0.00 0.00 44.36 3.58
123 124 1.306633 GGGAGGTCACATTTCCCCC 59.693 63.158 0.69 0.00 43.98 5.40
153 154 2.821366 GCGCCTGCACACTGCTAT 60.821 61.111 0.00 0.00 45.31 2.97
154 155 3.095911 CGCCTGCACACTGCTATG 58.904 61.111 0.00 0.00 45.31 2.23
155 156 1.742880 CGCCTGCACACTGCTATGT 60.743 57.895 0.00 0.00 45.31 2.29
156 157 1.699656 CGCCTGCACACTGCTATGTC 61.700 60.000 0.00 0.00 45.31 3.06
157 158 0.392193 GCCTGCACACTGCTATGTCT 60.392 55.000 0.00 0.00 45.31 3.41
158 159 1.649664 CCTGCACACTGCTATGTCTC 58.350 55.000 0.00 0.00 45.31 3.36
159 160 1.649664 CTGCACACTGCTATGTCTCC 58.350 55.000 0.00 0.00 45.31 3.71
160 161 0.975887 TGCACACTGCTATGTCTCCA 59.024 50.000 0.00 0.00 45.31 3.86
161 162 1.338105 TGCACACTGCTATGTCTCCAC 60.338 52.381 0.00 0.00 45.31 4.02
162 163 2.009042 GCACACTGCTATGTCTCCACC 61.009 57.143 0.00 0.00 40.96 4.61
163 164 1.552337 CACACTGCTATGTCTCCACCT 59.448 52.381 0.00 0.00 0.00 4.00
164 165 1.552337 ACACTGCTATGTCTCCACCTG 59.448 52.381 0.00 0.00 0.00 4.00
165 166 1.827344 CACTGCTATGTCTCCACCTGA 59.173 52.381 0.00 0.00 0.00 3.86
166 167 2.106566 ACTGCTATGTCTCCACCTGAG 58.893 52.381 0.00 0.00 42.90 3.35
167 168 2.106566 CTGCTATGTCTCCACCTGAGT 58.893 52.381 0.00 0.00 42.12 3.41
168 169 2.100584 CTGCTATGTCTCCACCTGAGTC 59.899 54.545 0.00 0.00 42.12 3.36
169 170 1.066303 GCTATGTCTCCACCTGAGTCG 59.934 57.143 0.00 0.00 42.12 4.18
170 171 1.678627 CTATGTCTCCACCTGAGTCGG 59.321 57.143 0.00 0.00 42.12 4.79
171 172 1.608717 ATGTCTCCACCTGAGTCGGC 61.609 60.000 0.00 0.00 42.12 5.54
172 173 3.062466 TCTCCACCTGAGTCGGCG 61.062 66.667 0.00 0.00 42.12 6.46
173 174 4.803426 CTCCACCTGAGTCGGCGC 62.803 72.222 0.00 0.00 36.27 6.53
181 182 4.189188 GAGTCGGCGCCGCTCTTA 62.189 66.667 40.67 27.77 38.52 2.10
182 183 3.486252 GAGTCGGCGCCGCTCTTAT 62.486 63.158 40.67 26.87 38.52 1.73
183 184 3.030882 GTCGGCGCCGCTCTTATC 61.031 66.667 42.78 21.07 39.59 1.75
184 185 4.280494 TCGGCGCCGCTCTTATCC 62.280 66.667 42.78 3.01 39.59 2.59
185 186 4.585526 CGGCGCCGCTCTTATCCA 62.586 66.667 38.48 0.00 0.00 3.41
186 187 2.663188 GGCGCCGCTCTTATCCAG 60.663 66.667 12.58 0.00 0.00 3.86
187 188 3.341835 GCGCCGCTCTTATCCAGC 61.342 66.667 0.00 0.00 0.00 4.85
188 189 2.663188 CGCCGCTCTTATCCAGCC 60.663 66.667 0.00 0.00 32.83 4.85
189 190 2.663188 GCCGCTCTTATCCAGCCG 60.663 66.667 0.00 0.00 32.83 5.52
190 191 2.029666 CCGCTCTTATCCAGCCGG 59.970 66.667 0.00 0.00 32.83 6.13
191 192 2.029666 CGCTCTTATCCAGCCGGG 59.970 66.667 2.18 0.00 32.83 5.73
192 193 2.427753 GCTCTTATCCAGCCGGGG 59.572 66.667 2.18 0.00 37.22 5.73
193 194 2.427753 CTCTTATCCAGCCGGGGC 59.572 66.667 2.18 0.18 42.33 5.80
237 238 4.579384 CGTGGTGGCACCCAACCT 62.579 66.667 32.61 0.00 41.25 3.50
238 239 2.597510 GTGGTGGCACCCAACCTC 60.598 66.667 32.61 12.66 41.25 3.85
239 240 4.263572 TGGTGGCACCCAACCTCG 62.264 66.667 32.61 0.00 41.25 4.63
243 244 4.740822 GGCACCCAACCTCGGCAT 62.741 66.667 0.00 0.00 0.00 4.40
244 245 3.134127 GCACCCAACCTCGGCATC 61.134 66.667 0.00 0.00 0.00 3.91
245 246 2.819595 CACCCAACCTCGGCATCG 60.820 66.667 0.00 0.00 37.82 3.84
246 247 3.319198 ACCCAACCTCGGCATCGT 61.319 61.111 0.00 0.00 37.69 3.73
247 248 2.046314 CCCAACCTCGGCATCGTT 60.046 61.111 0.00 0.00 37.69 3.85
248 249 2.398554 CCCAACCTCGGCATCGTTG 61.399 63.158 0.00 0.00 37.27 4.10
276 277 5.629097 CGTATATACGTCATTCCTCTCACC 58.371 45.833 24.02 0.00 44.13 4.02
277 278 5.391736 CGTATATACGTCATTCCTCTCACCC 60.392 48.000 24.02 0.00 44.13 4.61
278 279 2.225382 TACGTCATTCCTCTCACCCA 57.775 50.000 0.00 0.00 0.00 4.51
279 280 1.573108 ACGTCATTCCTCTCACCCAT 58.427 50.000 0.00 0.00 0.00 4.00
280 281 1.909302 ACGTCATTCCTCTCACCCATT 59.091 47.619 0.00 0.00 0.00 3.16
281 282 2.305927 ACGTCATTCCTCTCACCCATTT 59.694 45.455 0.00 0.00 0.00 2.32
282 283 2.679837 CGTCATTCCTCTCACCCATTTG 59.320 50.000 0.00 0.00 0.00 2.32
283 284 3.690460 GTCATTCCTCTCACCCATTTGT 58.310 45.455 0.00 0.00 0.00 2.83
284 285 3.691609 GTCATTCCTCTCACCCATTTGTC 59.308 47.826 0.00 0.00 0.00 3.18
285 286 2.472695 TTCCTCTCACCCATTTGTCG 57.527 50.000 0.00 0.00 0.00 4.35
286 287 1.348064 TCCTCTCACCCATTTGTCGT 58.652 50.000 0.00 0.00 0.00 4.34
287 288 1.275291 TCCTCTCACCCATTTGTCGTC 59.725 52.381 0.00 0.00 0.00 4.20
288 289 1.001974 CCTCTCACCCATTTGTCGTCA 59.998 52.381 0.00 0.00 0.00 4.35
289 290 2.341257 CTCTCACCCATTTGTCGTCAG 58.659 52.381 0.00 0.00 0.00 3.51
290 291 1.691976 TCTCACCCATTTGTCGTCAGT 59.308 47.619 0.00 0.00 0.00 3.41
291 292 2.894765 TCTCACCCATTTGTCGTCAGTA 59.105 45.455 0.00 0.00 0.00 2.74
292 293 3.056821 TCTCACCCATTTGTCGTCAGTAG 60.057 47.826 0.00 0.00 0.00 2.57
293 294 1.732259 CACCCATTTGTCGTCAGTAGC 59.268 52.381 0.00 0.00 0.00 3.58
294 295 1.338769 ACCCATTTGTCGTCAGTAGCC 60.339 52.381 0.00 0.00 0.00 3.93
295 296 1.338674 CCCATTTGTCGTCAGTAGCCA 60.339 52.381 0.00 0.00 0.00 4.75
296 297 2.632377 CCATTTGTCGTCAGTAGCCAT 58.368 47.619 0.00 0.00 0.00 4.40
297 298 2.609459 CCATTTGTCGTCAGTAGCCATC 59.391 50.000 0.00 0.00 0.00 3.51
298 299 3.261580 CATTTGTCGTCAGTAGCCATCA 58.738 45.455 0.00 0.00 0.00 3.07
299 300 2.363788 TTGTCGTCAGTAGCCATCAC 57.636 50.000 0.00 0.00 0.00 3.06
300 301 0.530744 TGTCGTCAGTAGCCATCACC 59.469 55.000 0.00 0.00 0.00 4.02
301 302 0.530744 GTCGTCAGTAGCCATCACCA 59.469 55.000 0.00 0.00 0.00 4.17
302 303 0.530744 TCGTCAGTAGCCATCACCAC 59.469 55.000 0.00 0.00 0.00 4.16
303 304 0.532573 CGTCAGTAGCCATCACCACT 59.467 55.000 0.00 0.00 0.00 4.00
304 305 1.469940 CGTCAGTAGCCATCACCACTC 60.470 57.143 0.00 0.00 0.00 3.51
305 306 0.817654 TCAGTAGCCATCACCACTCG 59.182 55.000 0.00 0.00 0.00 4.18
306 307 0.817654 CAGTAGCCATCACCACTCGA 59.182 55.000 0.00 0.00 0.00 4.04
307 308 1.410517 CAGTAGCCATCACCACTCGAT 59.589 52.381 0.00 0.00 0.00 3.59
308 309 1.683917 AGTAGCCATCACCACTCGATC 59.316 52.381 0.00 0.00 0.00 3.69
309 310 1.409064 GTAGCCATCACCACTCGATCA 59.591 52.381 0.00 0.00 0.00 2.92
310 311 0.904649 AGCCATCACCACTCGATCAA 59.095 50.000 0.00 0.00 0.00 2.57
311 312 1.278985 AGCCATCACCACTCGATCAAA 59.721 47.619 0.00 0.00 0.00 2.69
312 313 1.398390 GCCATCACCACTCGATCAAAC 59.602 52.381 0.00 0.00 0.00 2.93
313 314 2.009774 CCATCACCACTCGATCAAACC 58.990 52.381 0.00 0.00 0.00 3.27
314 315 2.009774 CATCACCACTCGATCAAACCC 58.990 52.381 0.00 0.00 0.00 4.11
315 316 1.052617 TCACCACTCGATCAAACCCA 58.947 50.000 0.00 0.00 0.00 4.51
316 317 1.628340 TCACCACTCGATCAAACCCAT 59.372 47.619 0.00 0.00 0.00 4.00
317 318 1.739466 CACCACTCGATCAAACCCATG 59.261 52.381 0.00 0.00 0.00 3.66
318 319 0.734889 CCACTCGATCAAACCCATGC 59.265 55.000 0.00 0.00 0.00 4.06
319 320 1.452110 CACTCGATCAAACCCATGCA 58.548 50.000 0.00 0.00 0.00 3.96
320 321 1.399440 CACTCGATCAAACCCATGCAG 59.601 52.381 0.00 0.00 0.00 4.41
321 322 0.379669 CTCGATCAAACCCATGCAGC 59.620 55.000 0.00 0.00 0.00 5.25
322 323 1.031571 TCGATCAAACCCATGCAGCC 61.032 55.000 0.00 0.00 0.00 4.85
323 324 1.314534 CGATCAAACCCATGCAGCCA 61.315 55.000 0.00 0.00 0.00 4.75
324 325 0.458669 GATCAAACCCATGCAGCCAG 59.541 55.000 0.00 0.00 0.00 4.85
325 326 0.040058 ATCAAACCCATGCAGCCAGA 59.960 50.000 0.00 0.00 0.00 3.86
326 327 0.609957 TCAAACCCATGCAGCCAGAG 60.610 55.000 0.00 0.00 0.00 3.35
327 328 0.609957 CAAACCCATGCAGCCAGAGA 60.610 55.000 0.00 0.00 0.00 3.10
328 329 0.112995 AAACCCATGCAGCCAGAGAA 59.887 50.000 0.00 0.00 0.00 2.87
329 330 0.112995 AACCCATGCAGCCAGAGAAA 59.887 50.000 0.00 0.00 0.00 2.52
330 331 0.323178 ACCCATGCAGCCAGAGAAAG 60.323 55.000 0.00 0.00 0.00 2.62
331 332 1.035932 CCCATGCAGCCAGAGAAAGG 61.036 60.000 0.00 0.00 0.00 3.11
332 333 1.035932 CCATGCAGCCAGAGAAAGGG 61.036 60.000 0.00 0.00 0.00 3.95
337 338 2.354343 GCCAGAGAAAGGGCTGCT 59.646 61.111 0.00 0.00 46.74 4.24
338 339 2.045131 GCCAGAGAAAGGGCTGCTG 61.045 63.158 0.00 0.00 46.74 4.41
339 340 1.681666 CCAGAGAAAGGGCTGCTGA 59.318 57.895 0.00 0.00 0.00 4.26
340 341 0.392729 CCAGAGAAAGGGCTGCTGAG 60.393 60.000 0.00 0.00 0.00 3.35
341 342 0.392729 CAGAGAAAGGGCTGCTGAGG 60.393 60.000 0.00 0.00 0.00 3.86
342 343 1.077858 GAGAAAGGGCTGCTGAGGG 60.078 63.158 0.00 0.00 0.00 4.30
343 344 1.846712 GAGAAAGGGCTGCTGAGGGT 61.847 60.000 0.00 0.00 0.00 4.34
344 345 1.377856 GAAAGGGCTGCTGAGGGTC 60.378 63.158 0.00 0.00 0.00 4.46
345 346 1.846712 GAAAGGGCTGCTGAGGGTCT 61.847 60.000 0.00 0.00 0.00 3.85
346 347 1.846712 AAAGGGCTGCTGAGGGTCTC 61.847 60.000 0.00 0.00 0.00 3.36
347 348 3.791586 GGGCTGCTGAGGGTCTCC 61.792 72.222 0.00 0.00 0.00 3.71
349 350 2.297129 GGCTGCTGAGGGTCTCCTT 61.297 63.158 0.00 0.00 45.05 3.36
350 351 1.220477 GCTGCTGAGGGTCTCCTTC 59.780 63.158 0.00 0.00 45.05 3.46
351 352 1.904032 CTGCTGAGGGTCTCCTTCC 59.096 63.158 0.00 0.00 45.05 3.46
502 511 7.561722 TGTTGGGGCATTTTAAGCACTATTATA 59.438 33.333 0.00 0.00 35.24 0.98
1387 1405 5.554437 TGTCTGTTGTATGGTAAGGAACA 57.446 39.130 0.00 0.00 0.00 3.18
1731 1751 2.094597 TGAATGCTCTTTTGAATGCCCG 60.095 45.455 0.00 0.00 0.00 6.13
1732 1752 1.838112 ATGCTCTTTTGAATGCCCGA 58.162 45.000 0.00 0.00 0.00 5.14
1847 1869 4.704540 TGAAGGCAGAGTTGTCAAAGAAAA 59.295 37.500 0.00 0.00 0.00 2.29
1852 1877 5.037385 GCAGAGTTGTCAAAGAAAAAGGAC 58.963 41.667 0.00 0.00 0.00 3.85
2420 2446 8.309656 CCTATGACTATGAGATTATGCAACTCA 58.690 37.037 14.91 14.91 43.25 3.41
2735 2761 4.694339 GAATCTCGGGCAAGTAACATACT 58.306 43.478 0.00 0.00 41.73 2.12
2834 2860 0.685097 GCATCCAGGTCCCGCTATTA 59.315 55.000 0.00 0.00 0.00 0.98
2846 2872 4.748600 GTCCCGCTATTAGTTATTGACCAC 59.251 45.833 0.00 0.00 0.00 4.16
3123 3149 6.976934 ATGTTTGGGTATGAGAACACTTTT 57.023 33.333 0.00 0.00 35.13 2.27
3142 3168 1.886422 TTTTGGGCCAAAGGGAAAGT 58.114 45.000 28.89 0.00 34.72 2.66
3210 3237 2.115266 CAAACGCCAGGGTCCCTT 59.885 61.111 8.08 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.017669 GCCGTAGATATAATTTACTTCATACGG 57.982 37.037 16.71 16.71 44.59 4.02
5 6 9.563898 TGCCGTAGATATAATTTACTTCATACG 57.436 33.333 0.00 0.00 0.00 3.06
8 9 9.998106 AAGTGCCGTAGATATAATTTACTTCAT 57.002 29.630 0.00 0.00 0.00 2.57
9 10 9.256477 CAAGTGCCGTAGATATAATTTACTTCA 57.744 33.333 0.00 0.00 0.00 3.02
10 11 9.472361 TCAAGTGCCGTAGATATAATTTACTTC 57.528 33.333 0.00 0.00 0.00 3.01
11 12 9.826574 TTCAAGTGCCGTAGATATAATTTACTT 57.173 29.630 0.00 0.00 0.00 2.24
12 13 9.998106 ATTCAAGTGCCGTAGATATAATTTACT 57.002 29.630 0.00 0.00 0.00 2.24
19 20 9.856488 GATCTAAATTCAAGTGCCGTAGATATA 57.144 33.333 0.00 0.00 29.29 0.86
20 21 8.589338 AGATCTAAATTCAAGTGCCGTAGATAT 58.411 33.333 0.00 0.00 29.29 1.63
21 22 7.952671 AGATCTAAATTCAAGTGCCGTAGATA 58.047 34.615 0.00 0.00 29.29 1.98
22 23 6.821388 AGATCTAAATTCAAGTGCCGTAGAT 58.179 36.000 0.00 0.00 31.25 1.98
23 24 6.222038 AGATCTAAATTCAAGTGCCGTAGA 57.778 37.500 0.00 0.00 0.00 2.59
24 25 7.426410 TCTAGATCTAAATTCAAGTGCCGTAG 58.574 38.462 3.57 0.00 0.00 3.51
25 26 7.342769 TCTAGATCTAAATTCAAGTGCCGTA 57.657 36.000 3.57 0.00 0.00 4.02
26 27 6.222038 TCTAGATCTAAATTCAAGTGCCGT 57.778 37.500 3.57 0.00 0.00 5.68
27 28 7.721286 AATCTAGATCTAAATTCAAGTGCCG 57.279 36.000 5.51 0.00 0.00 5.69
83 84 9.667107 CTCCCACACTTGATTTTTCTTATAGTA 57.333 33.333 0.00 0.00 0.00 1.82
84 85 7.611855 CCTCCCACACTTGATTTTTCTTATAGT 59.388 37.037 0.00 0.00 0.00 2.12
85 86 7.611855 ACCTCCCACACTTGATTTTTCTTATAG 59.388 37.037 0.00 0.00 0.00 1.31
86 87 7.466804 ACCTCCCACACTTGATTTTTCTTATA 58.533 34.615 0.00 0.00 0.00 0.98
87 88 6.314917 ACCTCCCACACTTGATTTTTCTTAT 58.685 36.000 0.00 0.00 0.00 1.73
88 89 5.701224 ACCTCCCACACTTGATTTTTCTTA 58.299 37.500 0.00 0.00 0.00 2.10
89 90 4.546674 ACCTCCCACACTTGATTTTTCTT 58.453 39.130 0.00 0.00 0.00 2.52
90 91 4.145052 GACCTCCCACACTTGATTTTTCT 58.855 43.478 0.00 0.00 0.00 2.52
91 92 3.888930 TGACCTCCCACACTTGATTTTTC 59.111 43.478 0.00 0.00 0.00 2.29
92 93 3.636764 GTGACCTCCCACACTTGATTTTT 59.363 43.478 0.00 0.00 37.04 1.94
93 94 3.222603 GTGACCTCCCACACTTGATTTT 58.777 45.455 0.00 0.00 37.04 1.82
94 95 2.174639 TGTGACCTCCCACACTTGATTT 59.825 45.455 0.00 0.00 41.63 2.17
95 96 1.774254 TGTGACCTCCCACACTTGATT 59.226 47.619 0.00 0.00 41.63 2.57
96 97 1.434188 TGTGACCTCCCACACTTGAT 58.566 50.000 0.00 0.00 41.63 2.57
97 98 2.923619 TGTGACCTCCCACACTTGA 58.076 52.632 0.00 0.00 41.63 3.02
139 140 4.311892 TGGAGACATAGCAGTGTGCAGG 62.312 54.545 1.08 0.00 40.43 4.85
140 141 1.066645 TGGAGACATAGCAGTGTGCAG 60.067 52.381 1.08 0.00 40.43 4.41
141 142 0.975887 TGGAGACATAGCAGTGTGCA 59.024 50.000 1.08 0.00 40.43 4.57
142 143 1.363744 GTGGAGACATAGCAGTGTGC 58.636 55.000 0.00 0.00 46.14 4.57
143 144 1.552337 AGGTGGAGACATAGCAGTGTG 59.448 52.381 0.00 0.00 46.14 3.82
144 145 1.552337 CAGGTGGAGACATAGCAGTGT 59.448 52.381 0.00 0.00 46.14 3.55
145 146 1.827344 TCAGGTGGAGACATAGCAGTG 59.173 52.381 0.00 0.00 46.14 3.66
146 147 2.238084 TCAGGTGGAGACATAGCAGT 57.762 50.000 0.00 0.00 46.14 4.40
168 169 4.585526 TGGATAAGAGCGGCGCCG 62.586 66.667 43.13 43.13 43.09 6.46
169 170 2.663188 CTGGATAAGAGCGGCGCC 60.663 66.667 30.40 19.07 0.00 6.53
170 171 3.341835 GCTGGATAAGAGCGGCGC 61.342 66.667 26.86 26.86 0.00 6.53
171 172 2.663188 GGCTGGATAAGAGCGGCG 60.663 66.667 0.51 0.51 37.32 6.46
172 173 2.663188 CGGCTGGATAAGAGCGGC 60.663 66.667 0.00 0.00 37.32 6.53
173 174 2.029666 CCGGCTGGATAAGAGCGG 59.970 66.667 5.28 0.00 37.32 5.52
174 175 2.029666 CCCGGCTGGATAAGAGCG 59.970 66.667 15.09 0.00 37.32 5.03
175 176 2.427753 CCCCGGCTGGATAAGAGC 59.572 66.667 15.09 0.00 37.49 4.09
176 177 2.427753 GCCCCGGCTGGATAAGAG 59.572 66.667 15.09 0.00 37.49 2.85
177 178 3.546543 CGCCCCGGCTGGATAAGA 61.547 66.667 15.09 0.00 39.32 2.10
178 179 3.521529 CTCGCCCCGGCTGGATAAG 62.522 68.421 15.09 0.69 39.32 1.73
179 180 3.546543 CTCGCCCCGGCTGGATAA 61.547 66.667 15.09 0.00 39.32 1.75
220 221 4.579384 AGGTTGGGTGCCACCACG 62.579 66.667 17.22 0.00 43.00 4.94
221 222 2.597510 GAGGTTGGGTGCCACCAC 60.598 66.667 17.22 5.97 41.02 4.16
222 223 4.263572 CGAGGTTGGGTGCCACCA 62.264 66.667 17.22 0.00 41.02 4.17
226 227 4.740822 ATGCCGAGGTTGGGTGCC 62.741 66.667 0.00 0.00 0.00 5.01
227 228 3.134127 GATGCCGAGGTTGGGTGC 61.134 66.667 0.00 0.00 0.00 5.01
228 229 2.819595 CGATGCCGAGGTTGGGTG 60.820 66.667 0.00 0.00 38.22 4.61
229 230 2.890766 AACGATGCCGAGGTTGGGT 61.891 57.895 0.00 0.00 39.50 4.51
230 231 2.046314 AACGATGCCGAGGTTGGG 60.046 61.111 0.00 0.00 39.50 4.12
231 232 3.177600 CAACGATGCCGAGGTTGG 58.822 61.111 0.00 0.00 37.86 3.77
254 255 5.475909 TGGGTGAGAGGAATGACGTATATAC 59.524 44.000 2.53 2.53 0.00 1.47
255 256 5.637127 TGGGTGAGAGGAATGACGTATATA 58.363 41.667 0.00 0.00 0.00 0.86
256 257 4.480115 TGGGTGAGAGGAATGACGTATAT 58.520 43.478 0.00 0.00 0.00 0.86
257 258 3.905968 TGGGTGAGAGGAATGACGTATA 58.094 45.455 0.00 0.00 0.00 1.47
258 259 2.747177 TGGGTGAGAGGAATGACGTAT 58.253 47.619 0.00 0.00 0.00 3.06
259 260 2.225382 TGGGTGAGAGGAATGACGTA 57.775 50.000 0.00 0.00 0.00 3.57
260 261 1.573108 ATGGGTGAGAGGAATGACGT 58.427 50.000 0.00 0.00 0.00 4.34
261 262 2.679837 CAAATGGGTGAGAGGAATGACG 59.320 50.000 0.00 0.00 0.00 4.35
262 263 3.690460 ACAAATGGGTGAGAGGAATGAC 58.310 45.455 0.00 0.00 0.00 3.06
263 264 3.619733 CGACAAATGGGTGAGAGGAATGA 60.620 47.826 0.00 0.00 0.00 2.57
264 265 2.679837 CGACAAATGGGTGAGAGGAATG 59.320 50.000 0.00 0.00 0.00 2.67
265 266 2.305927 ACGACAAATGGGTGAGAGGAAT 59.694 45.455 0.00 0.00 0.00 3.01
266 267 1.697432 ACGACAAATGGGTGAGAGGAA 59.303 47.619 0.00 0.00 0.00 3.36
267 268 1.275291 GACGACAAATGGGTGAGAGGA 59.725 52.381 0.00 0.00 0.00 3.71
268 269 1.001974 TGACGACAAATGGGTGAGAGG 59.998 52.381 0.00 0.00 0.00 3.69
269 270 2.289072 ACTGACGACAAATGGGTGAGAG 60.289 50.000 0.00 0.00 0.00 3.20
270 271 1.691976 ACTGACGACAAATGGGTGAGA 59.308 47.619 0.00 0.00 0.00 3.27
271 272 2.169832 ACTGACGACAAATGGGTGAG 57.830 50.000 0.00 0.00 0.00 3.51
272 273 2.611971 GCTACTGACGACAAATGGGTGA 60.612 50.000 0.00 0.00 0.00 4.02
273 274 1.732259 GCTACTGACGACAAATGGGTG 59.268 52.381 0.00 0.00 0.00 4.61
274 275 1.338769 GGCTACTGACGACAAATGGGT 60.339 52.381 0.00 0.00 0.00 4.51
275 276 1.338674 TGGCTACTGACGACAAATGGG 60.339 52.381 0.00 0.00 0.00 4.00
276 277 2.093306 TGGCTACTGACGACAAATGG 57.907 50.000 0.00 0.00 0.00 3.16
277 278 3.062639 GTGATGGCTACTGACGACAAATG 59.937 47.826 0.00 0.00 0.00 2.32
278 279 3.262420 GTGATGGCTACTGACGACAAAT 58.738 45.455 0.00 0.00 0.00 2.32
279 280 2.611971 GGTGATGGCTACTGACGACAAA 60.612 50.000 0.00 0.00 0.00 2.83
280 281 1.067142 GGTGATGGCTACTGACGACAA 60.067 52.381 0.00 0.00 0.00 3.18
281 282 0.530744 GGTGATGGCTACTGACGACA 59.469 55.000 0.00 0.00 0.00 4.35
282 283 0.530744 TGGTGATGGCTACTGACGAC 59.469 55.000 0.00 0.00 0.00 4.34
283 284 0.530744 GTGGTGATGGCTACTGACGA 59.469 55.000 0.00 0.00 0.00 4.20
284 285 0.532573 AGTGGTGATGGCTACTGACG 59.467 55.000 0.00 0.00 0.00 4.35
285 286 1.469940 CGAGTGGTGATGGCTACTGAC 60.470 57.143 0.00 0.00 30.20 3.51
286 287 0.817654 CGAGTGGTGATGGCTACTGA 59.182 55.000 0.00 0.00 30.20 3.41
287 288 0.817654 TCGAGTGGTGATGGCTACTG 59.182 55.000 0.00 0.00 30.20 2.74
288 289 1.683917 GATCGAGTGGTGATGGCTACT 59.316 52.381 0.00 0.00 32.78 2.57
289 290 1.409064 TGATCGAGTGGTGATGGCTAC 59.591 52.381 0.00 0.00 0.00 3.58
290 291 1.775385 TGATCGAGTGGTGATGGCTA 58.225 50.000 0.00 0.00 0.00 3.93
291 292 0.904649 TTGATCGAGTGGTGATGGCT 59.095 50.000 0.00 0.00 0.00 4.75
292 293 1.398390 GTTTGATCGAGTGGTGATGGC 59.602 52.381 0.00 0.00 0.00 4.40
293 294 2.009774 GGTTTGATCGAGTGGTGATGG 58.990 52.381 0.00 0.00 0.00 3.51
294 295 2.009774 GGGTTTGATCGAGTGGTGATG 58.990 52.381 0.00 0.00 0.00 3.07
295 296 1.628340 TGGGTTTGATCGAGTGGTGAT 59.372 47.619 0.00 0.00 0.00 3.06
296 297 1.052617 TGGGTTTGATCGAGTGGTGA 58.947 50.000 0.00 0.00 0.00 4.02
297 298 1.739466 CATGGGTTTGATCGAGTGGTG 59.261 52.381 0.00 0.00 0.00 4.17
298 299 1.950484 GCATGGGTTTGATCGAGTGGT 60.950 52.381 0.00 0.00 0.00 4.16
299 300 0.734889 GCATGGGTTTGATCGAGTGG 59.265 55.000 0.00 0.00 0.00 4.00
300 301 1.399440 CTGCATGGGTTTGATCGAGTG 59.601 52.381 0.00 0.00 0.00 3.51
301 302 1.742761 CTGCATGGGTTTGATCGAGT 58.257 50.000 0.00 0.00 0.00 4.18
302 303 0.379669 GCTGCATGGGTTTGATCGAG 59.620 55.000 0.00 0.00 0.00 4.04
303 304 1.031571 GGCTGCATGGGTTTGATCGA 61.032 55.000 0.50 0.00 0.00 3.59
304 305 1.314534 TGGCTGCATGGGTTTGATCG 61.315 55.000 0.50 0.00 0.00 3.69
305 306 0.458669 CTGGCTGCATGGGTTTGATC 59.541 55.000 0.50 0.00 0.00 2.92
306 307 0.040058 TCTGGCTGCATGGGTTTGAT 59.960 50.000 0.50 0.00 0.00 2.57
307 308 0.609957 CTCTGGCTGCATGGGTTTGA 60.610 55.000 0.50 0.00 0.00 2.69
308 309 0.609957 TCTCTGGCTGCATGGGTTTG 60.610 55.000 0.50 0.00 0.00 2.93
309 310 0.112995 TTCTCTGGCTGCATGGGTTT 59.887 50.000 0.50 0.00 0.00 3.27
310 311 0.112995 TTTCTCTGGCTGCATGGGTT 59.887 50.000 0.50 0.00 0.00 4.11
311 312 0.323178 CTTTCTCTGGCTGCATGGGT 60.323 55.000 0.50 0.00 0.00 4.51
312 313 1.035932 CCTTTCTCTGGCTGCATGGG 61.036 60.000 0.50 0.00 0.00 4.00
313 314 1.035932 CCCTTTCTCTGGCTGCATGG 61.036 60.000 0.50 0.00 0.00 3.66
314 315 1.664321 GCCCTTTCTCTGGCTGCATG 61.664 60.000 0.50 0.00 44.46 4.06
315 316 1.379576 GCCCTTTCTCTGGCTGCAT 60.380 57.895 0.50 0.00 44.46 3.96
316 317 2.034687 GCCCTTTCTCTGGCTGCA 59.965 61.111 0.50 0.00 44.46 4.41
321 322 0.392729 CTCAGCAGCCCTTTCTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
322 323 0.392729 CCTCAGCAGCCCTTTCTCTG 60.393 60.000 0.00 0.00 0.00 3.35
323 324 1.560866 CCCTCAGCAGCCCTTTCTCT 61.561 60.000 0.00 0.00 0.00 3.10
324 325 1.077858 CCCTCAGCAGCCCTTTCTC 60.078 63.158 0.00 0.00 0.00 2.87
325 326 1.846712 GACCCTCAGCAGCCCTTTCT 61.847 60.000 0.00 0.00 0.00 2.52
326 327 1.377856 GACCCTCAGCAGCCCTTTC 60.378 63.158 0.00 0.00 0.00 2.62
327 328 1.846712 GAGACCCTCAGCAGCCCTTT 61.847 60.000 0.00 0.00 0.00 3.11
328 329 2.204059 AGACCCTCAGCAGCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
329 330 2.686835 GAGACCCTCAGCAGCCCT 60.687 66.667 0.00 0.00 0.00 5.19
330 331 3.791586 GGAGACCCTCAGCAGCCC 61.792 72.222 0.00 0.00 31.08 5.19
331 332 2.250741 GAAGGAGACCCTCAGCAGCC 62.251 65.000 0.00 0.00 43.48 4.85
332 333 1.220477 GAAGGAGACCCTCAGCAGC 59.780 63.158 0.00 0.00 43.48 5.25
333 334 0.617249 AGGAAGGAGACCCTCAGCAG 60.617 60.000 0.00 0.00 43.48 4.24
334 335 0.178891 AAGGAAGGAGACCCTCAGCA 60.179 55.000 0.00 0.00 43.48 4.41
335 336 1.760029 CTAAGGAAGGAGACCCTCAGC 59.240 57.143 0.00 0.00 43.48 4.26
347 348 5.964958 TTTGCAATTCACTCCTAAGGAAG 57.035 39.130 0.00 0.00 0.00 3.46
348 349 6.723298 TTTTTGCAATTCACTCCTAAGGAA 57.277 33.333 0.00 0.00 0.00 3.36
387 388 6.266558 AGAAGAGTCTTTTCTGCAACTCTAGA 59.733 38.462 15.07 0.00 45.81 2.43
392 393 4.985409 CGTAGAAGAGTCTTTTCTGCAACT 59.015 41.667 17.52 0.00 37.19 3.16
421 422 5.277825 CGCAAAATCAGTGTTTTCTGGTAA 58.722 37.500 0.00 0.00 36.25 2.85
423 424 3.705604 CGCAAAATCAGTGTTTTCTGGT 58.294 40.909 0.00 0.00 36.25 4.00
441 442 1.748950 TCTGCAAATGATTAGGCGCA 58.251 45.000 10.83 0.00 0.00 6.09
502 511 2.380571 AAAATCGGGCCCCACCTGTT 62.381 55.000 18.66 0.00 46.11 3.16
850 862 0.459489 AGGTTCAGATCGAGCTCAGC 59.541 55.000 15.40 0.00 0.00 4.26
1387 1405 4.342862 ACAAGTCACTAAGCACTCACAT 57.657 40.909 0.00 0.00 0.00 3.21
1731 1751 1.229209 TCCACACCCCTCTCCTGTC 60.229 63.158 0.00 0.00 0.00 3.51
1732 1752 1.229336 CTCCACACCCCTCTCCTGT 60.229 63.158 0.00 0.00 0.00 4.00
1847 1869 5.279056 CCTGTAGTTTCTTCTTCTCGTCCTT 60.279 44.000 0.00 0.00 0.00 3.36
1852 1877 5.630661 TCTCCTGTAGTTTCTTCTTCTCG 57.369 43.478 0.00 0.00 0.00 4.04
2159 2184 9.679661 TGTATTCACACATGTATTATGTTTCCT 57.320 29.630 0.00 0.00 0.00 3.36
2420 2446 1.043022 AGTGTTCCTCCGGTAAACGT 58.957 50.000 0.00 0.00 42.24 3.99
2579 2605 4.937201 ATAGTGATGTGCATTACCGAGA 57.063 40.909 0.00 0.00 0.00 4.04
2698 2724 4.142578 CCGAGATTCGATCATCGGTATCTT 60.143 45.833 19.87 9.35 43.74 2.40
2735 2761 2.925724 ACGTTGTTCCCTTTGTCATCA 58.074 42.857 0.00 0.00 0.00 3.07
2846 2872 0.891373 ACATGACCGAGACACCTCTG 59.109 55.000 0.00 0.00 37.28 3.35
2970 2996 3.696051 TCGTCATGTCTGTGATCTCATCA 59.304 43.478 0.00 2.19 36.84 3.07
3123 3149 1.765904 GACTTTCCCTTTGGCCCAAAA 59.234 47.619 10.66 0.00 32.75 2.44
3138 3164 5.487433 CTTTCCAAAAACCTTGTGGACTTT 58.513 37.500 0.00 0.00 41.15 2.66
3141 3167 3.194861 GCTTTCCAAAAACCTTGTGGAC 58.805 45.455 0.00 0.00 41.15 4.02
3142 3168 2.159170 CGCTTTCCAAAAACCTTGTGGA 60.159 45.455 0.00 0.00 39.70 4.02
3195 3222 4.660938 GCAAGGGACCCTGGCGTT 62.661 66.667 24.69 0.00 41.11 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.