Multiple sequence alignment - TraesCS2A01G172000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G172000 chr2A 100.000 3938 0 0 1 3938 127989986 127993923 0.000000e+00 7273.0
1 TraesCS2A01G172000 chr2A 87.324 213 21 6 3650 3860 127993417 127993625 5.090000e-59 239.0
2 TraesCS2A01G172000 chr2A 87.324 213 21 6 3432 3640 127993635 127993845 5.090000e-59 239.0
3 TraesCS2A01G172000 chr2A 90.323 155 9 4 2156 2304 127991776 127991930 8.630000e-47 198.0
4 TraesCS2A01G172000 chr2A 90.323 155 9 4 1791 1945 127992141 127992289 8.630000e-47 198.0
5 TraesCS2A01G172000 chr2A 100.000 35 0 0 3903 3937 127993697 127993731 9.130000e-07 65.8
6 TraesCS2A01G172000 chr2D 91.664 3263 177 51 726 3938 123095826 123099043 0.000000e+00 4431.0
7 TraesCS2A01G172000 chr2D 81.743 482 50 17 164 640 123094194 123094642 6.220000e-98 368.0
8 TraesCS2A01G172000 chr2D 85.117 383 22 17 3479 3859 123098805 123099154 3.740000e-95 359.0
9 TraesCS2A01G172000 chr2D 89.855 207 17 4 3656 3861 123098547 123098750 3.020000e-66 263.0
10 TraesCS2A01G172000 chr2D 89.216 204 21 1 3656 3859 504194101 504193899 1.820000e-63 254.0
11 TraesCS2A01G172000 chr2D 88.268 179 12 6 2134 2304 123096855 123097032 5.160000e-49 206.0
12 TraesCS2A01G172000 chr2D 91.781 146 12 0 3494 3639 123099009 123099154 1.860000e-48 204.0
13 TraesCS2A01G172000 chr2D 90.000 160 11 3 1791 1950 123097260 123097414 6.670000e-48 202.0
14 TraesCS2A01G172000 chr2D 100.000 33 0 0 3905 3937 504194044 504194012 1.180000e-05 62.1
15 TraesCS2A01G172000 chr2D 97.143 35 1 0 3903 3937 123098818 123098852 4.250000e-05 60.2
16 TraesCS2A01G172000 chr2B 89.845 3289 197 63 720 3938 175894916 175898137 0.000000e+00 4096.0
17 TraesCS2A01G172000 chr2B 89.202 213 19 4 3650 3861 175897637 175897846 3.020000e-66 263.0
18 TraesCS2A01G172000 chr2B 86.697 218 23 4 3656 3873 592584150 592583939 1.830000e-58 237.0
19 TraesCS2A01G172000 chr2B 84.360 211 29 4 3432 3639 175897858 175898067 1.860000e-48 204.0
20 TraesCS2A01G172000 chr2B 87.778 180 12 8 2134 2304 175895974 175896152 6.670000e-48 202.0
21 TraesCS2A01G172000 chr2B 89.796 147 14 1 3494 3639 175898103 175898249 1.870000e-43 187.0
22 TraesCS2A01G172000 chr2B 100.000 35 0 0 3903 3937 592584098 592584064 9.130000e-07 65.8
23 TraesCS2A01G172000 chr2B 94.872 39 2 0 646 684 175891340 175891378 1.180000e-05 62.1
24 TraesCS2A01G172000 chr1A 82.679 560 60 16 3308 3859 566477206 566476676 2.770000e-126 462.0
25 TraesCS2A01G172000 chr1A 87.736 212 20 5 3432 3639 566476885 566476676 3.930000e-60 243.0
26 TraesCS2A01G172000 chr1A 97.143 35 1 0 3903 3937 566476823 566476789 4.250000e-05 60.2
27 TraesCS2A01G172000 chr1D 92.565 269 17 1 3594 3859 472519981 472519713 2.220000e-102 383.0
28 TraesCS2A01G172000 chr1D 87.143 210 25 2 3432 3639 472519922 472519713 1.830000e-58 237.0
29 TraesCS2A01G172000 chr1D 100.000 35 0 0 3903 3937 472519860 472519826 9.130000e-07 65.8
30 TraesCS2A01G172000 chr6B 100.000 30 0 0 3908 3937 456772190 456772161 5.500000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G172000 chr2A 127989986 127993923 3937 False 1368.800000 7273 92.549000 1 3938 6 chr2A.!!$F1 3937
1 TraesCS2A01G172000 chr2D 123094194 123099154 4960 False 761.650000 4431 89.446375 164 3938 8 chr2D.!!$F1 3774
2 TraesCS2A01G172000 chr2B 175891340 175898249 6909 False 835.683333 4096 89.308833 646 3938 6 chr2B.!!$F1 3292
3 TraesCS2A01G172000 chr1A 566476676 566477206 530 True 255.066667 462 89.186000 3308 3937 3 chr1A.!!$R1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.106519 GCCCATTGTGGAGCAGGTAT 60.107 55.0 0.00 0.0 40.96 2.73 F
387 391 0.109532 TTGCCATCACTTCCAACCGA 59.890 50.0 0.00 0.0 0.00 4.69 F
576 581 0.178990 GAAGGCTGGTGTGGGAAGTT 60.179 55.0 0.00 0.0 0.00 2.66 F
684 726 0.248580 TGACGACAGTACGTGCGTTT 60.249 50.0 1.66 0.0 46.52 3.60 F
1569 6201 0.320374 CCCACACGCTCTGGAACTTA 59.680 55.0 0.00 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 5928 0.247537 CGGCGTCGAAAACAATAGGC 60.248 55.000 1.44 0.0 39.00 3.93 R
1327 5956 1.299850 GCCACCGGAGCAACAAAAC 60.300 57.895 9.46 0.0 0.00 2.43 R
2121 6780 2.159627 GGCACAAGAATCGTTGGTACTG 59.840 50.000 0.00 0.0 0.00 2.74 R
2273 6948 3.248024 AGGTGATGAGGACAACCAGTTA 58.752 45.455 0.00 0.0 38.94 2.24 R
3544 8243 1.322442 AGCAGGAAACACTTTCAGCC 58.678 50.000 7.40 0.0 40.71 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.995511 TCCTTTGTATGATTTTTAGGACGG 57.004 37.500 0.00 0.00 0.00 4.79
24 25 5.883673 TCCTTTGTATGATTTTTAGGACGGG 59.116 40.000 0.00 0.00 0.00 5.28
25 26 5.883673 CCTTTGTATGATTTTTAGGACGGGA 59.116 40.000 0.00 0.00 0.00 5.14
26 27 6.376018 CCTTTGTATGATTTTTAGGACGGGAA 59.624 38.462 0.00 0.00 0.00 3.97
27 28 7.068226 CCTTTGTATGATTTTTAGGACGGGAAT 59.932 37.037 0.00 0.00 0.00 3.01
28 29 9.116067 CTTTGTATGATTTTTAGGACGGGAATA 57.884 33.333 0.00 0.00 0.00 1.75
29 30 9.635404 TTTGTATGATTTTTAGGACGGGAATAT 57.365 29.630 0.00 0.00 0.00 1.28
30 31 8.842358 TGTATGATTTTTAGGACGGGAATATC 57.158 34.615 0.00 0.00 0.00 1.63
31 32 8.656806 TGTATGATTTTTAGGACGGGAATATCT 58.343 33.333 0.00 0.00 0.00 1.98
34 35 7.159372 TGATTTTTAGGACGGGAATATCTAGC 58.841 38.462 0.00 0.00 0.00 3.42
35 36 6.488769 TTTTTAGGACGGGAATATCTAGCA 57.511 37.500 0.00 0.00 0.00 3.49
36 37 6.488769 TTTTAGGACGGGAATATCTAGCAA 57.511 37.500 0.00 0.00 0.00 3.91
37 38 6.681729 TTTAGGACGGGAATATCTAGCAAT 57.318 37.500 0.00 0.00 0.00 3.56
38 39 4.810191 AGGACGGGAATATCTAGCAATC 57.190 45.455 0.00 0.00 0.00 2.67
39 40 4.160329 AGGACGGGAATATCTAGCAATCA 58.840 43.478 0.00 0.00 0.00 2.57
40 41 4.780021 AGGACGGGAATATCTAGCAATCAT 59.220 41.667 0.00 0.00 0.00 2.45
41 42 5.105146 AGGACGGGAATATCTAGCAATCATC 60.105 44.000 0.00 0.00 0.00 2.92
42 43 5.337571 GGACGGGAATATCTAGCAATCATCA 60.338 44.000 0.00 0.00 0.00 3.07
43 44 5.728471 ACGGGAATATCTAGCAATCATCAG 58.272 41.667 0.00 0.00 0.00 2.90
44 45 4.569966 CGGGAATATCTAGCAATCATCAGC 59.430 45.833 0.00 0.00 0.00 4.26
45 46 4.880696 GGGAATATCTAGCAATCATCAGCC 59.119 45.833 0.00 0.00 0.00 4.85
46 47 5.494724 GGAATATCTAGCAATCATCAGCCA 58.505 41.667 0.00 0.00 0.00 4.75
47 48 5.942236 GGAATATCTAGCAATCATCAGCCAA 59.058 40.000 0.00 0.00 0.00 4.52
48 49 6.128063 GGAATATCTAGCAATCATCAGCCAAC 60.128 42.308 0.00 0.00 0.00 3.77
49 50 2.554142 TCTAGCAATCATCAGCCAACG 58.446 47.619 0.00 0.00 0.00 4.10
50 51 2.168313 TCTAGCAATCATCAGCCAACGA 59.832 45.455 0.00 0.00 0.00 3.85
51 52 1.825090 AGCAATCATCAGCCAACGAA 58.175 45.000 0.00 0.00 0.00 3.85
52 53 1.470098 AGCAATCATCAGCCAACGAAC 59.530 47.619 0.00 0.00 0.00 3.95
53 54 1.199789 GCAATCATCAGCCAACGAACA 59.800 47.619 0.00 0.00 0.00 3.18
54 55 2.351641 GCAATCATCAGCCAACGAACAA 60.352 45.455 0.00 0.00 0.00 2.83
55 56 3.856638 GCAATCATCAGCCAACGAACAAA 60.857 43.478 0.00 0.00 0.00 2.83
56 57 4.487948 CAATCATCAGCCAACGAACAAAT 58.512 39.130 0.00 0.00 0.00 2.32
57 58 4.789012 ATCATCAGCCAACGAACAAATT 57.211 36.364 0.00 0.00 0.00 1.82
58 59 4.582701 TCATCAGCCAACGAACAAATTT 57.417 36.364 0.00 0.00 0.00 1.82
59 60 4.297510 TCATCAGCCAACGAACAAATTTG 58.702 39.130 16.67 16.67 0.00 2.32
60 61 4.037327 TCATCAGCCAACGAACAAATTTGA 59.963 37.500 24.64 0.00 0.00 2.69
61 62 4.582701 TCAGCCAACGAACAAATTTGAT 57.417 36.364 24.64 13.21 0.00 2.57
62 63 4.545610 TCAGCCAACGAACAAATTTGATC 58.454 39.130 24.64 20.09 0.00 2.92
63 64 4.037327 TCAGCCAACGAACAAATTTGATCA 59.963 37.500 24.64 0.00 31.18 2.92
64 65 4.148696 CAGCCAACGAACAAATTTGATCAC 59.851 41.667 24.64 10.82 31.18 3.06
65 66 3.428534 GCCAACGAACAAATTTGATCACC 59.571 43.478 24.64 7.40 31.18 4.02
66 67 4.615949 CCAACGAACAAATTTGATCACCA 58.384 39.130 24.64 0.00 31.18 4.17
67 68 5.229423 CCAACGAACAAATTTGATCACCAT 58.771 37.500 24.64 5.59 31.18 3.55
68 69 5.118971 CCAACGAACAAATTTGATCACCATG 59.881 40.000 24.64 15.73 31.18 3.66
69 70 4.808558 ACGAACAAATTTGATCACCATGG 58.191 39.130 24.64 11.19 31.18 3.66
70 71 4.175516 CGAACAAATTTGATCACCATGGG 58.824 43.478 24.64 5.22 31.18 4.00
71 72 4.506758 GAACAAATTTGATCACCATGGGG 58.493 43.478 24.64 13.53 41.29 4.96
72 73 2.839425 ACAAATTTGATCACCATGGGGG 59.161 45.455 24.64 6.76 44.81 5.40
73 74 1.499368 AATTTGATCACCATGGGGGC 58.501 50.000 15.76 7.53 42.05 5.80
74 75 0.756442 ATTTGATCACCATGGGGGCG 60.756 55.000 15.76 0.00 42.05 6.13
75 76 1.857638 TTTGATCACCATGGGGGCGA 61.858 55.000 15.76 6.01 42.05 5.54
76 77 1.644437 TTGATCACCATGGGGGCGAT 61.644 55.000 15.76 10.88 42.05 4.58
77 78 1.302832 GATCACCATGGGGGCGATC 60.303 63.158 15.76 15.64 42.05 3.69
78 79 2.055689 GATCACCATGGGGGCGATCA 62.056 60.000 15.76 0.00 42.46 2.92
79 80 1.644437 ATCACCATGGGGGCGATCAA 61.644 55.000 15.76 0.00 42.05 2.57
80 81 2.120909 CACCATGGGGGCGATCAAC 61.121 63.158 18.09 0.00 42.05 3.18
81 82 2.519302 CCATGGGGGCGATCAACC 60.519 66.667 2.85 0.00 0.00 3.77
82 83 2.275089 CATGGGGGCGATCAACCA 59.725 61.111 4.28 1.17 37.41 3.67
83 84 1.825191 CATGGGGGCGATCAACCAG 60.825 63.158 4.28 0.00 36.27 4.00
84 85 2.308722 ATGGGGGCGATCAACCAGT 61.309 57.895 4.28 0.00 36.27 4.00
85 86 2.438434 GGGGGCGATCAACCAGTG 60.438 66.667 4.28 0.00 0.00 3.66
86 87 2.668632 GGGGCGATCAACCAGTGA 59.331 61.111 4.28 0.00 41.67 3.41
87 88 1.002624 GGGGCGATCAACCAGTGAA 60.003 57.895 4.28 0.00 40.50 3.18
88 89 0.394352 GGGGCGATCAACCAGTGAAT 60.394 55.000 4.28 0.00 40.50 2.57
89 90 0.734889 GGGCGATCAACCAGTGAATG 59.265 55.000 4.28 0.00 40.50 2.67
90 91 1.453155 GGCGATCAACCAGTGAATGT 58.547 50.000 0.00 0.00 40.50 2.71
91 92 1.812571 GGCGATCAACCAGTGAATGTT 59.187 47.619 0.00 0.00 40.50 2.71
92 93 2.228822 GGCGATCAACCAGTGAATGTTT 59.771 45.455 0.00 0.00 40.50 2.83
93 94 3.305335 GGCGATCAACCAGTGAATGTTTT 60.305 43.478 0.00 0.00 40.50 2.43
94 95 3.914364 GCGATCAACCAGTGAATGTTTTC 59.086 43.478 0.00 0.00 40.50 2.29
95 96 4.151070 CGATCAACCAGTGAATGTTTTCG 58.849 43.478 0.00 0.00 40.50 3.46
96 97 4.319477 CGATCAACCAGTGAATGTTTTCGT 60.319 41.667 0.00 0.00 40.50 3.85
97 98 4.974368 TCAACCAGTGAATGTTTTCGTT 57.026 36.364 0.00 0.00 34.39 3.85
98 99 4.915704 TCAACCAGTGAATGTTTTCGTTC 58.084 39.130 0.00 0.00 43.78 3.95
99 100 3.602390 ACCAGTGAATGTTTTCGTTCG 57.398 42.857 0.00 0.00 45.73 3.95
104 105 3.732943 GTGAATGTTTTCGTTCGCTAGG 58.267 45.455 0.00 0.00 46.61 3.02
105 106 3.185797 GTGAATGTTTTCGTTCGCTAGGT 59.814 43.478 0.00 0.00 46.61 3.08
106 107 3.810941 TGAATGTTTTCGTTCGCTAGGTT 59.189 39.130 0.00 0.00 45.73 3.50
107 108 3.806316 ATGTTTTCGTTCGCTAGGTTG 57.194 42.857 0.00 0.00 0.00 3.77
108 109 1.868498 TGTTTTCGTTCGCTAGGTTGG 59.132 47.619 0.00 0.00 0.00 3.77
109 110 1.869132 GTTTTCGTTCGCTAGGTTGGT 59.131 47.619 0.00 0.00 0.00 3.67
110 111 1.504359 TTTCGTTCGCTAGGTTGGTG 58.496 50.000 0.00 0.00 0.00 4.17
111 112 0.947180 TTCGTTCGCTAGGTTGGTGC 60.947 55.000 0.00 0.00 0.00 5.01
112 113 2.388232 CGTTCGCTAGGTTGGTGCC 61.388 63.158 0.00 0.00 0.00 5.01
113 114 1.302192 GTTCGCTAGGTTGGTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
114 115 0.676782 GTTCGCTAGGTTGGTGCCAT 60.677 55.000 0.00 0.00 0.00 4.40
115 116 0.676466 TTCGCTAGGTTGGTGCCATG 60.676 55.000 0.00 0.00 0.00 3.66
116 117 2.114670 CGCTAGGTTGGTGCCATGG 61.115 63.158 7.63 7.63 0.00 3.66
117 118 1.302949 GCTAGGTTGGTGCCATGGA 59.697 57.895 18.40 0.00 0.00 3.41
118 119 0.749454 GCTAGGTTGGTGCCATGGAG 60.749 60.000 18.40 0.83 0.00 3.86
119 120 0.749454 CTAGGTTGGTGCCATGGAGC 60.749 60.000 18.40 11.03 0.00 4.70
120 121 1.496444 TAGGTTGGTGCCATGGAGCA 61.496 55.000 18.40 13.63 41.46 4.26
121 122 1.907807 GGTTGGTGCCATGGAGCAA 60.908 57.895 18.40 18.61 46.19 3.91
122 123 1.588082 GTTGGTGCCATGGAGCAAG 59.412 57.895 18.40 0.00 46.19 4.01
123 124 2.277591 TTGGTGCCATGGAGCAAGC 61.278 57.895 18.40 7.64 46.19 4.01
124 125 2.677524 GGTGCCATGGAGCAAGCA 60.678 61.111 18.40 1.15 46.19 3.91
125 126 2.056223 GGTGCCATGGAGCAAGCAT 61.056 57.895 18.40 0.00 46.19 3.79
126 127 0.752743 GGTGCCATGGAGCAAGCATA 60.753 55.000 18.40 0.00 46.19 3.14
127 128 0.383231 GTGCCATGGAGCAAGCATAC 59.617 55.000 18.40 0.00 46.19 2.39
128 129 0.752743 TGCCATGGAGCAAGCATACC 60.753 55.000 18.40 0.00 40.56 2.73
129 130 0.752743 GCCATGGAGCAAGCATACCA 60.753 55.000 18.40 7.75 36.83 3.25
130 131 1.315690 CCATGGAGCAAGCATACCAG 58.684 55.000 5.56 4.69 35.84 4.00
131 132 0.666913 CATGGAGCAAGCATACCAGC 59.333 55.000 10.25 0.00 35.84 4.85
132 133 0.816825 ATGGAGCAAGCATACCAGCG 60.817 55.000 10.25 0.00 40.15 5.18
133 134 2.182842 GGAGCAAGCATACCAGCGG 61.183 63.158 0.00 0.00 40.15 5.52
134 135 2.825836 AGCAAGCATACCAGCGGC 60.826 61.111 0.00 0.00 40.15 6.53
135 136 3.892581 GCAAGCATACCAGCGGCC 61.893 66.667 0.00 0.00 40.15 6.13
136 137 3.211963 CAAGCATACCAGCGGCCC 61.212 66.667 0.00 0.00 40.15 5.80
137 138 3.727258 AAGCATACCAGCGGCCCA 61.727 61.111 0.00 0.00 40.15 5.36
138 139 3.060614 AAGCATACCAGCGGCCCAT 62.061 57.895 0.00 0.00 40.15 4.00
139 140 2.519302 GCATACCAGCGGCCCATT 60.519 61.111 0.00 0.00 0.00 3.16
140 141 2.848858 GCATACCAGCGGCCCATTG 61.849 63.158 0.00 0.00 0.00 2.82
141 142 1.453745 CATACCAGCGGCCCATTGT 60.454 57.895 0.00 0.00 0.00 2.71
142 143 1.453745 ATACCAGCGGCCCATTGTG 60.454 57.895 0.00 0.00 0.00 3.33
143 144 2.909457 ATACCAGCGGCCCATTGTGG 62.909 60.000 0.00 0.00 37.25 4.17
144 145 4.738998 CCAGCGGCCCATTGTGGA 62.739 66.667 0.00 0.00 40.96 4.02
145 146 3.136123 CAGCGGCCCATTGTGGAG 61.136 66.667 0.00 0.00 40.96 3.86
148 149 3.136123 CGGCCCATTGTGGAGCAG 61.136 66.667 0.00 0.00 40.96 4.24
149 150 2.757099 GGCCCATTGTGGAGCAGG 60.757 66.667 0.00 0.00 40.96 4.85
150 151 2.036256 GCCCATTGTGGAGCAGGT 59.964 61.111 0.00 0.00 40.96 4.00
151 152 1.302949 GCCCATTGTGGAGCAGGTA 59.697 57.895 0.00 0.00 40.96 3.08
152 153 0.106519 GCCCATTGTGGAGCAGGTAT 60.107 55.000 0.00 0.00 40.96 2.73
153 154 1.683943 CCCATTGTGGAGCAGGTATG 58.316 55.000 0.00 0.00 40.96 2.39
154 155 1.212688 CCCATTGTGGAGCAGGTATGA 59.787 52.381 0.00 0.00 40.96 2.15
155 156 2.158564 CCCATTGTGGAGCAGGTATGAT 60.159 50.000 0.00 0.00 40.96 2.45
156 157 3.559069 CCATTGTGGAGCAGGTATGATT 58.441 45.455 0.00 0.00 40.96 2.57
157 158 3.956199 CCATTGTGGAGCAGGTATGATTT 59.044 43.478 0.00 0.00 40.96 2.17
158 159 4.403432 CCATTGTGGAGCAGGTATGATTTT 59.597 41.667 0.00 0.00 40.96 1.82
159 160 5.105228 CCATTGTGGAGCAGGTATGATTTTT 60.105 40.000 0.00 0.00 40.96 1.94
204 205 5.824904 AACTTGCCATCTGATCAATACAC 57.175 39.130 0.00 0.00 0.00 2.90
237 238 9.349713 TCTAAAAATGTCATGGACTAAACAACT 57.650 29.630 0.00 0.00 33.15 3.16
247 248 8.092687 TCATGGACTAAACAACTACTTCCTAAC 58.907 37.037 0.00 0.00 0.00 2.34
258 259 8.843262 ACAACTACTTCCTAACATTTTACAACC 58.157 33.333 0.00 0.00 0.00 3.77
260 261 8.983702 ACTACTTCCTAACATTTTACAACCAA 57.016 30.769 0.00 0.00 0.00 3.67
264 265 8.576442 ACTTCCTAACATTTTACAACCAATCTG 58.424 33.333 0.00 0.00 0.00 2.90
266 267 8.335532 TCCTAACATTTTACAACCAATCTGAG 57.664 34.615 0.00 0.00 0.00 3.35
331 335 6.761731 TTTTGACTTAAATTGCGAACCATG 57.238 33.333 0.00 0.00 0.00 3.66
336 340 6.980978 TGACTTAAATTGCGAACCATGAAAAA 59.019 30.769 0.00 0.00 0.00 1.94
338 342 6.201997 ACTTAAATTGCGAACCATGAAAAACC 59.798 34.615 0.00 0.00 0.00 3.27
339 343 4.335400 AATTGCGAACCATGAAAAACCT 57.665 36.364 0.00 0.00 0.00 3.50
342 346 4.920640 TGCGAACCATGAAAAACCTAAA 57.079 36.364 0.00 0.00 0.00 1.85
343 347 5.461032 TGCGAACCATGAAAAACCTAAAT 57.539 34.783 0.00 0.00 0.00 1.40
354 358 6.169800 TGAAAAACCTAAATATGCCAAAGCC 58.830 36.000 0.00 0.00 38.69 4.35
356 360 3.396685 ACCTAAATATGCCAAAGCCCA 57.603 42.857 0.00 0.00 38.69 5.36
383 387 4.406456 ACTATGTTTGCCATCACTTCCAA 58.594 39.130 0.00 0.00 34.86 3.53
386 390 0.958091 TTTGCCATCACTTCCAACCG 59.042 50.000 0.00 0.00 0.00 4.44
387 391 0.109532 TTGCCATCACTTCCAACCGA 59.890 50.000 0.00 0.00 0.00 4.69
388 392 0.327924 TGCCATCACTTCCAACCGAT 59.672 50.000 0.00 0.00 0.00 4.18
397 401 5.309638 TCACTTCCAACCGATAAACAATGA 58.690 37.500 0.00 0.00 0.00 2.57
404 408 6.038161 TCCAACCGATAAACAATGACATGATC 59.962 38.462 0.00 0.00 0.00 2.92
409 413 7.011763 ACCGATAAACAATGACATGATCTTGAG 59.988 37.037 15.03 2.91 0.00 3.02
417 421 8.080417 ACAATGACATGATCTTGAGAAAACTTG 58.920 33.333 15.03 9.92 0.00 3.16
444 448 9.476202 AAGTAAACAATTTTTCTAGGAATGTGC 57.524 29.630 0.00 0.00 0.00 4.57
445 449 8.088365 AGTAAACAATTTTTCTAGGAATGTGCC 58.912 33.333 0.00 0.00 0.00 5.01
446 450 6.418057 AACAATTTTTCTAGGAATGTGCCA 57.582 33.333 0.00 0.00 0.00 4.92
447 451 6.610075 ACAATTTTTCTAGGAATGTGCCAT 57.390 33.333 0.00 0.00 0.00 4.40
448 452 6.400568 ACAATTTTTCTAGGAATGTGCCATG 58.599 36.000 0.00 0.00 0.00 3.66
449 453 6.211184 ACAATTTTTCTAGGAATGTGCCATGA 59.789 34.615 0.00 0.00 0.00 3.07
450 454 7.093201 ACAATTTTTCTAGGAATGTGCCATGAT 60.093 33.333 0.00 0.00 0.00 2.45
451 455 8.415553 CAATTTTTCTAGGAATGTGCCATGATA 58.584 33.333 0.00 0.00 0.00 2.15
452 456 6.942532 TTTTCTAGGAATGTGCCATGATAC 57.057 37.500 0.00 0.00 0.00 2.24
453 457 5.894298 TTCTAGGAATGTGCCATGATACT 57.106 39.130 0.00 0.00 0.00 2.12
454 458 5.894298 TCTAGGAATGTGCCATGATACTT 57.106 39.130 0.00 0.00 0.00 2.24
455 459 6.252599 TCTAGGAATGTGCCATGATACTTT 57.747 37.500 0.00 0.00 0.00 2.66
456 460 6.057533 TCTAGGAATGTGCCATGATACTTTG 58.942 40.000 0.00 0.00 0.00 2.77
457 461 3.382546 AGGAATGTGCCATGATACTTTGC 59.617 43.478 0.00 3.14 0.00 3.68
458 462 3.130869 GGAATGTGCCATGATACTTTGCA 59.869 43.478 0.00 0.00 0.00 4.08
459 463 4.381825 GGAATGTGCCATGATACTTTGCAA 60.382 41.667 0.00 0.00 33.11 4.08
499 503 8.532186 TGGGAGCTTTATATCTTAAATTTGCA 57.468 30.769 0.00 0.00 0.00 4.08
512 516 9.807649 ATCTTAAATTTGCAACTGGACATATTC 57.192 29.630 0.00 0.00 0.00 1.75
518 522 4.269183 TGCAACTGGACATATTCGGAAAT 58.731 39.130 0.00 0.00 0.00 2.17
520 524 5.883115 TGCAACTGGACATATTCGGAAATTA 59.117 36.000 0.00 0.00 0.00 1.40
521 525 6.183360 TGCAACTGGACATATTCGGAAATTAC 60.183 38.462 0.00 0.00 0.00 1.89
523 527 5.996644 ACTGGACATATTCGGAAATTACCA 58.003 37.500 0.00 1.32 0.00 3.25
530 535 7.279615 ACATATTCGGAAATTACCATGTCAGA 58.720 34.615 0.00 0.00 0.00 3.27
545 550 6.266103 ACCATGTCAGAAATTTCAGAATGTGT 59.734 34.615 19.99 16.27 37.40 3.72
559 564 1.250328 ATGTGTACGTCGGTGGAGAA 58.750 50.000 0.00 0.00 0.00 2.87
565 570 2.266055 GTCGGTGGAGAAGGCTGG 59.734 66.667 0.00 0.00 0.00 4.85
566 571 2.203788 TCGGTGGAGAAGGCTGGT 60.204 61.111 0.00 0.00 0.00 4.00
569 574 1.302832 GGTGGAGAAGGCTGGTGTG 60.303 63.158 0.00 0.00 0.00 3.82
576 581 0.178990 GAAGGCTGGTGTGGGAAGTT 60.179 55.000 0.00 0.00 0.00 2.66
580 585 1.302511 CTGGTGTGGGAAGTTCCGG 60.303 63.158 15.80 0.00 37.43 5.14
581 586 2.033602 GGTGTGGGAAGTTCCGGG 59.966 66.667 15.80 0.00 37.43 5.73
582 587 2.033602 GTGTGGGAAGTTCCGGGG 59.966 66.667 15.80 0.00 37.43 5.73
583 588 2.122324 TGTGGGAAGTTCCGGGGA 60.122 61.111 15.80 0.00 37.43 4.81
610 615 4.787999 GCCCGACGACTAAGAGTG 57.212 61.111 0.00 0.00 0.00 3.51
617 622 2.677325 CGACGACTAAGAGTGGAGAGGA 60.677 54.545 0.00 0.00 0.00 3.71
619 624 2.294074 CGACTAAGAGTGGAGAGGAGG 58.706 57.143 0.00 0.00 0.00 4.30
630 635 3.906846 GTGGAGAGGAGGGATGTGATAAT 59.093 47.826 0.00 0.00 0.00 1.28
640 645 6.352565 GGAGGGATGTGATAATAATGGAGAGG 60.353 46.154 0.00 0.00 0.00 3.69
641 646 6.094302 AGGGATGTGATAATAATGGAGAGGT 58.906 40.000 0.00 0.00 0.00 3.85
642 647 6.214412 AGGGATGTGATAATAATGGAGAGGTC 59.786 42.308 0.00 0.00 0.00 3.85
643 648 6.013379 GGGATGTGATAATAATGGAGAGGTCA 60.013 42.308 0.00 0.00 0.00 4.02
644 649 7.453393 GGATGTGATAATAATGGAGAGGTCAA 58.547 38.462 0.00 0.00 0.00 3.18
684 726 0.248580 TGACGACAGTACGTGCGTTT 60.249 50.000 1.66 0.00 46.52 3.60
686 728 1.210545 ACGACAGTACGTGCGTTTGG 61.211 55.000 1.66 0.00 44.84 3.28
687 729 1.203313 GACAGTACGTGCGTTTGGC 59.797 57.895 1.66 0.93 43.96 4.52
736 5351 7.695055 TCCCTGGATAACATTTTCACTTTAGA 58.305 34.615 0.00 0.00 0.00 2.10
845 5465 1.407162 CCCGACCGGCCTAAACATTTA 60.407 52.381 0.00 0.00 0.00 1.40
846 5466 2.567985 CCGACCGGCCTAAACATTTAT 58.432 47.619 0.00 0.00 0.00 1.40
891 5511 7.217258 CCGATCGATCTATTATATATTCGCAGC 59.783 40.741 22.43 0.00 0.00 5.25
956 5585 2.885676 CGCCGCCAAATCATCTCCG 61.886 63.158 0.00 0.00 0.00 4.63
967 5596 3.364964 ATCTCCGTCCCCCTCCCA 61.365 66.667 0.00 0.00 0.00 4.37
968 5597 3.698263 ATCTCCGTCCCCCTCCCAC 62.698 68.421 0.00 0.00 0.00 4.61
969 5598 4.400251 CTCCGTCCCCCTCCCACT 62.400 72.222 0.00 0.00 0.00 4.00
970 5599 4.393778 TCCGTCCCCCTCCCACTC 62.394 72.222 0.00 0.00 0.00 3.51
976 5605 4.825679 CCCCTCCCACTCCCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
977 5606 4.825679 CCCTCCCACTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
978 5607 4.825679 CCTCCCACTCCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
1008 5637 2.026822 TCCTTTCTCCAACATGGCTCTC 60.027 50.000 0.00 0.00 37.47 3.20
1065 5694 0.338467 TCTCCCTTCTCGATCCCCAA 59.662 55.000 0.00 0.00 0.00 4.12
1106 5735 1.296056 ATTCTTACGCGCCGTTGCTT 61.296 50.000 5.73 0.00 41.54 3.91
1327 5956 2.279502 TTTCGACGCCGGATCTGAGG 62.280 60.000 5.05 0.38 36.24 3.86
1358 5987 1.971167 GGTGGCTGGCGATGTTTGA 60.971 57.895 0.00 0.00 0.00 2.69
1397 6026 1.755977 CGGAGGATAAGGGAGCTGACT 60.756 57.143 0.00 0.00 0.00 3.41
1436 6065 3.932483 AACTTTCCGGACGGCGGT 61.932 61.111 13.24 0.00 34.68 5.68
1569 6201 0.320374 CCCACACGCTCTGGAACTTA 59.680 55.000 0.00 0.00 0.00 2.24
1770 6424 7.162082 TGAATCTTCTTGAAGTTAGGGTTCTC 58.838 38.462 9.80 0.00 0.00 2.87
1773 6427 4.950205 TCTTGAAGTTAGGGTTCTCGTT 57.050 40.909 0.00 0.00 0.00 3.85
1775 6429 4.587684 TCTTGAAGTTAGGGTTCTCGTTCT 59.412 41.667 0.00 0.00 0.00 3.01
1777 6431 2.745515 AGTTAGGGTTCTCGTTCTGC 57.254 50.000 0.00 0.00 0.00 4.26
1786 6440 3.295228 CTCGTTCTGCCGTTTGCCG 62.295 63.158 0.00 0.00 40.16 5.69
1812 6466 7.116519 GGACGTCATCTATAAAGCAAATAGGTC 59.883 40.741 18.91 0.00 0.00 3.85
1953 6607 6.245408 ACCTATAATTGGCTTTCACAAGTCA 58.755 36.000 0.00 0.00 43.15 3.41
1981 6635 6.485313 TGTGTCCGGATATAAAATTGCTTAGG 59.515 38.462 7.81 0.00 0.00 2.69
1987 6641 8.237267 CCGGATATAAAATTGCTTAGGTGAATC 58.763 37.037 0.00 0.00 0.00 2.52
2108 6767 6.878317 AGATGCATGTTGCTACTAGTTTCTA 58.122 36.000 2.46 0.00 45.31 2.10
2109 6768 7.331026 AGATGCATGTTGCTACTAGTTTCTAA 58.669 34.615 2.46 0.00 45.31 2.10
2111 6770 7.921786 TGCATGTTGCTACTAGTTTCTAATT 57.078 32.000 0.00 0.00 45.31 1.40
2120 6779 8.812972 TGCTACTAGTTTCTAATTTGGAGAGAA 58.187 33.333 0.00 0.00 0.00 2.87
2121 6780 9.089601 GCTACTAGTTTCTAATTTGGAGAGAAC 57.910 37.037 0.00 0.00 0.00 3.01
2132 6791 2.589720 TGGAGAGAACAGTACCAACGA 58.410 47.619 0.00 0.00 0.00 3.85
2145 6820 3.066291 ACCAACGATTCTTGTGCCATA 57.934 42.857 0.00 0.00 0.00 2.74
2149 6824 4.082787 CCAACGATTCTTGTGCCATAGTTT 60.083 41.667 0.00 0.00 0.00 2.66
2180 6855 8.150945 TGTCATCTATAAAGCAAATAGGTCTCC 58.849 37.037 0.00 0.00 0.00 3.71
2227 6902 4.079253 ACTAAATTACCTGTGGCAACCAG 58.921 43.478 0.00 0.00 32.34 4.00
2268 6943 5.994668 AGCTTTGTCTATAGGCTTCTAATGC 59.005 40.000 5.83 5.57 0.00 3.56
2269 6944 5.994668 GCTTTGTCTATAGGCTTCTAATGCT 59.005 40.000 5.83 0.00 0.00 3.79
2272 6947 9.547753 CTTTGTCTATAGGCTTCTAATGCTTTA 57.452 33.333 5.83 0.00 0.00 1.85
2290 6966 5.880332 TGCTTTATAACTGGTTGTCCTCATC 59.120 40.000 0.00 0.00 34.23 2.92
2304 6980 3.321968 GTCCTCATCACCTTTTGGCTTTT 59.678 43.478 0.00 0.00 45.59 2.27
2325 7001 9.797473 GCTTTTGCAATTCTTTTCTTATGTTAC 57.203 29.630 0.00 0.00 46.58 2.50
2329 7005 6.072175 TGCAATTCTTTTCTTATGTTACGGCT 60.072 34.615 0.00 0.00 0.00 5.52
2332 7008 5.155278 TCTTTTCTTATGTTACGGCTGGA 57.845 39.130 0.00 0.00 0.00 3.86
2353 7029 7.814587 GCTGGAAGTTAAAATTGCTAACTGAAT 59.185 33.333 11.90 0.69 39.11 2.57
2383 7059 8.927675 TTACTATTATCAGTTGTTTGTTGGGT 57.072 30.769 0.00 0.00 0.00 4.51
2478 7154 0.984995 GAAGGGCTGTGAGGTACCTT 59.015 55.000 17.53 0.00 43.79 3.50
2531 7207 3.198068 TCGAGGCAATTTAGCTCATGTC 58.802 45.455 0.00 0.00 34.17 3.06
2534 7210 3.950395 GAGGCAATTTAGCTCATGTCCTT 59.050 43.478 0.00 0.00 34.17 3.36
2535 7211 3.698040 AGGCAATTTAGCTCATGTCCTTG 59.302 43.478 0.00 0.00 34.17 3.61
2608 7286 4.213270 CGTGCTAAGTCCATGAAGTTCAAA 59.787 41.667 10.14 0.00 0.00 2.69
2711 7390 1.215423 GGGGCCTACTTCACATGGAAT 59.785 52.381 0.84 0.00 34.32 3.01
2826 7507 0.548031 TCATGCTTGACTGGGATCCC 59.452 55.000 25.22 25.22 0.00 3.85
2845 7526 1.203174 CCAAGGGGAAACAAGGACCAT 60.203 52.381 0.00 0.00 35.59 3.55
2856 7537 4.021102 ACAAGGACCATCTACACCTTTG 57.979 45.455 0.00 0.00 40.21 2.77
2972 7655 3.700038 CGGTTCTGCCTAGGGGTATATAG 59.300 52.174 11.72 0.00 34.25 1.31
2990 7673 8.358895 GGTATATAGGAGTTTAGGTTGACTGAC 58.641 40.741 0.00 0.00 0.00 3.51
3002 7685 1.990799 TGACTGACGCTATGGTTTCG 58.009 50.000 0.00 0.00 0.00 3.46
3048 7732 6.474140 TTTATGATGGTCGTGTACTGGTAT 57.526 37.500 0.00 0.00 0.00 2.73
3049 7733 3.793797 TGATGGTCGTGTACTGGTATG 57.206 47.619 0.00 0.00 0.00 2.39
3059 7743 4.332828 GTGTACTGGTATGAAAGGGCTTT 58.667 43.478 0.00 0.00 35.14 3.51
3085 7769 8.641498 ACCTTTTGAAGTTCAATCATCAGTAT 57.359 30.769 18.69 0.00 36.11 2.12
3087 7771 8.186821 CCTTTTGAAGTTCAATCATCAGTATCC 58.813 37.037 18.69 0.00 36.11 2.59
3131 7815 6.095300 TCAGGTTGCATGGTATTGTTAGAATG 59.905 38.462 0.00 0.00 0.00 2.67
3133 7817 5.394005 GGTTGCATGGTATTGTTAGAATGCA 60.394 40.000 4.14 4.14 46.21 3.96
3182 7866 3.189287 CCTTAGTGCTACAACTTGCTTGG 59.811 47.826 0.00 0.00 33.66 3.61
3222 7909 8.845227 TCTTCTGTTTATGTTATGCAAGTCAAA 58.155 29.630 0.00 0.00 0.00 2.69
3254 7941 6.318648 TGATCAGTAATTTGTAGGTTCCATGC 59.681 38.462 0.00 0.00 0.00 4.06
3290 7984 2.876550 CACATCATGCAGGATAGTGGTG 59.123 50.000 23.98 19.18 0.00 4.17
3294 7988 3.040477 TCATGCAGGATAGTGGTGATGA 58.960 45.455 0.00 0.00 0.00 2.92
3297 7991 2.169144 TGCAGGATAGTGGTGATGACTG 59.831 50.000 0.00 0.00 0.00 3.51
3298 7992 2.831333 CAGGATAGTGGTGATGACTGC 58.169 52.381 0.00 0.00 0.00 4.40
3300 7994 2.433604 AGGATAGTGGTGATGACTGCAG 59.566 50.000 13.48 13.48 0.00 4.41
3303 7997 4.141937 GGATAGTGGTGATGACTGCAGTAA 60.142 45.833 21.73 14.20 0.00 2.24
3304 7998 3.325293 AGTGGTGATGACTGCAGTAAG 57.675 47.619 21.73 0.00 0.00 2.34
3305 7999 2.899900 AGTGGTGATGACTGCAGTAAGA 59.100 45.455 21.73 7.29 0.00 2.10
3306 8000 3.517100 AGTGGTGATGACTGCAGTAAGAT 59.483 43.478 21.73 12.22 0.00 2.40
3351 8045 5.967088 TCACTTACCTCTCAACTAATCTGC 58.033 41.667 0.00 0.00 0.00 4.26
3359 8053 5.584251 CCTCTCAACTAATCTGCCTTTTCTC 59.416 44.000 0.00 0.00 0.00 2.87
3398 8094 6.815089 TGTTTTCAGTTTCCATAACAGCATT 58.185 32.000 0.00 0.00 0.00 3.56
3406 8102 8.458052 CAGTTTCCATAACAGCATTACAATACA 58.542 33.333 0.00 0.00 0.00 2.29
3442 8139 6.808829 TGTTCTTTGTCTTGATGAATGCTTT 58.191 32.000 0.00 0.00 0.00 3.51
3446 8143 7.143340 TCTTTGTCTTGATGAATGCTTTTGAG 58.857 34.615 0.00 0.00 0.00 3.02
3495 8193 4.455070 ACACTTTTCCTCCCTTTTAGCT 57.545 40.909 0.00 0.00 0.00 3.32
3528 8227 8.552034 GGATAAGTGTGTATCAGTTAAATGCTC 58.448 37.037 0.00 0.00 42.76 4.26
3531 8230 7.986085 AGTGTGTATCAGTTAAATGCTCTTT 57.014 32.000 0.00 0.00 0.00 2.52
3640 8339 6.976925 GCCAACAATCATTTTCCTCTCATTAG 59.023 38.462 0.00 0.00 0.00 1.73
3658 8360 0.694771 AGCCTTCCAAGATGACTGCA 59.305 50.000 0.00 0.00 0.00 4.41
3681 8383 6.604012 CATCTGAATCTATCTGCTTTGCATC 58.396 40.000 0.00 0.00 38.13 3.91
3682 8384 4.748600 TCTGAATCTATCTGCTTTGCATCG 59.251 41.667 0.00 0.00 38.13 3.84
3683 8385 4.696455 TGAATCTATCTGCTTTGCATCGA 58.304 39.130 0.00 0.00 38.13 3.59
3689 8391 3.542712 TCTGCTTTGCATCGAAAGTTC 57.457 42.857 0.00 0.00 38.13 3.01
3933 8635 5.813672 GCAGGATAAGTGTGTATCGGTTAAA 59.186 40.000 0.00 0.00 32.18 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.883673 CCCGTCCTAAAAATCATACAAAGGA 59.116 40.000 0.00 0.00 0.00 3.36
1 2 5.883673 TCCCGTCCTAAAAATCATACAAAGG 59.116 40.000 0.00 0.00 0.00 3.11
2 3 6.995511 TCCCGTCCTAAAAATCATACAAAG 57.004 37.500 0.00 0.00 0.00 2.77
3 4 7.948034 ATTCCCGTCCTAAAAATCATACAAA 57.052 32.000 0.00 0.00 0.00 2.83
4 5 9.280174 GATATTCCCGTCCTAAAAATCATACAA 57.720 33.333 0.00 0.00 0.00 2.41
5 6 8.656806 AGATATTCCCGTCCTAAAAATCATACA 58.343 33.333 0.00 0.00 0.00 2.29
8 9 7.824779 GCTAGATATTCCCGTCCTAAAAATCAT 59.175 37.037 0.00 0.00 0.00 2.45
9 10 7.159372 GCTAGATATTCCCGTCCTAAAAATCA 58.841 38.462 0.00 0.00 0.00 2.57
10 11 7.159372 TGCTAGATATTCCCGTCCTAAAAATC 58.841 38.462 0.00 0.00 0.00 2.17
11 12 7.074653 TGCTAGATATTCCCGTCCTAAAAAT 57.925 36.000 0.00 0.00 0.00 1.82
12 13 6.488769 TGCTAGATATTCCCGTCCTAAAAA 57.511 37.500 0.00 0.00 0.00 1.94
13 14 6.488769 TTGCTAGATATTCCCGTCCTAAAA 57.511 37.500 0.00 0.00 0.00 1.52
14 15 6.269077 TGATTGCTAGATATTCCCGTCCTAAA 59.731 38.462 0.00 0.00 0.00 1.85
15 16 5.778241 TGATTGCTAGATATTCCCGTCCTAA 59.222 40.000 0.00 0.00 0.00 2.69
16 17 5.330233 TGATTGCTAGATATTCCCGTCCTA 58.670 41.667 0.00 0.00 0.00 2.94
17 18 4.160329 TGATTGCTAGATATTCCCGTCCT 58.840 43.478 0.00 0.00 0.00 3.85
18 19 4.537135 TGATTGCTAGATATTCCCGTCC 57.463 45.455 0.00 0.00 0.00 4.79
19 20 5.724328 TGATGATTGCTAGATATTCCCGTC 58.276 41.667 0.00 0.00 0.00 4.79
20 21 5.728471 CTGATGATTGCTAGATATTCCCGT 58.272 41.667 0.00 0.00 0.00 5.28
21 22 4.569966 GCTGATGATTGCTAGATATTCCCG 59.430 45.833 0.00 0.00 0.00 5.14
22 23 4.880696 GGCTGATGATTGCTAGATATTCCC 59.119 45.833 0.00 0.00 0.00 3.97
23 24 5.494724 TGGCTGATGATTGCTAGATATTCC 58.505 41.667 0.00 0.00 0.00 3.01
24 25 6.401903 CGTTGGCTGATGATTGCTAGATATTC 60.402 42.308 0.00 0.00 0.00 1.75
25 26 5.410746 CGTTGGCTGATGATTGCTAGATATT 59.589 40.000 0.00 0.00 0.00 1.28
26 27 4.934001 CGTTGGCTGATGATTGCTAGATAT 59.066 41.667 0.00 0.00 0.00 1.63
27 28 4.039124 TCGTTGGCTGATGATTGCTAGATA 59.961 41.667 0.00 0.00 0.00 1.98
28 29 3.136763 CGTTGGCTGATGATTGCTAGAT 58.863 45.455 0.00 0.00 0.00 1.98
29 30 2.168313 TCGTTGGCTGATGATTGCTAGA 59.832 45.455 0.00 0.00 0.00 2.43
30 31 2.554142 TCGTTGGCTGATGATTGCTAG 58.446 47.619 0.00 0.00 0.00 3.42
31 32 2.677836 GTTCGTTGGCTGATGATTGCTA 59.322 45.455 0.00 0.00 0.00 3.49
32 33 1.470098 GTTCGTTGGCTGATGATTGCT 59.530 47.619 0.00 0.00 0.00 3.91
33 34 1.199789 TGTTCGTTGGCTGATGATTGC 59.800 47.619 0.00 0.00 0.00 3.56
34 35 3.557577 TTGTTCGTTGGCTGATGATTG 57.442 42.857 0.00 0.00 0.00 2.67
35 36 4.789012 ATTTGTTCGTTGGCTGATGATT 57.211 36.364 0.00 0.00 0.00 2.57
36 37 4.789012 AATTTGTTCGTTGGCTGATGAT 57.211 36.364 0.00 0.00 0.00 2.45
37 38 4.037327 TCAAATTTGTTCGTTGGCTGATGA 59.963 37.500 17.47 0.00 0.00 2.92
38 39 4.297510 TCAAATTTGTTCGTTGGCTGATG 58.702 39.130 17.47 0.00 0.00 3.07
39 40 4.582701 TCAAATTTGTTCGTTGGCTGAT 57.417 36.364 17.47 0.00 0.00 2.90
40 41 4.037327 TGATCAAATTTGTTCGTTGGCTGA 59.963 37.500 17.47 0.00 31.22 4.26
41 42 4.148696 GTGATCAAATTTGTTCGTTGGCTG 59.851 41.667 17.47 0.00 31.22 4.85
42 43 4.298332 GTGATCAAATTTGTTCGTTGGCT 58.702 39.130 17.47 0.00 31.22 4.75
43 44 3.428534 GGTGATCAAATTTGTTCGTTGGC 59.571 43.478 17.47 8.03 31.22 4.52
44 45 4.615949 TGGTGATCAAATTTGTTCGTTGG 58.384 39.130 17.47 0.00 31.22 3.77
45 46 5.118971 CCATGGTGATCAAATTTGTTCGTTG 59.881 40.000 17.47 13.08 31.22 4.10
46 47 5.229423 CCATGGTGATCAAATTTGTTCGTT 58.771 37.500 17.47 3.42 31.22 3.85
47 48 4.321899 CCCATGGTGATCAAATTTGTTCGT 60.322 41.667 17.47 3.38 31.22 3.85
48 49 4.175516 CCCATGGTGATCAAATTTGTTCG 58.824 43.478 17.47 6.19 31.22 3.95
49 50 4.506758 CCCCATGGTGATCAAATTTGTTC 58.493 43.478 17.47 17.99 0.00 3.18
50 51 3.263937 CCCCCATGGTGATCAAATTTGTT 59.736 43.478 17.47 9.72 0.00 2.83
51 52 2.839425 CCCCCATGGTGATCAAATTTGT 59.161 45.455 17.47 5.61 0.00 2.83
52 53 2.420408 GCCCCCATGGTGATCAAATTTG 60.420 50.000 11.73 12.15 36.04 2.32
53 54 1.839354 GCCCCCATGGTGATCAAATTT 59.161 47.619 11.73 0.00 36.04 1.82
54 55 1.499368 GCCCCCATGGTGATCAAATT 58.501 50.000 11.73 0.00 36.04 1.82
55 56 3.228939 GCCCCCATGGTGATCAAAT 57.771 52.632 11.73 0.00 36.04 2.32
56 57 4.783418 GCCCCCATGGTGATCAAA 57.217 55.556 11.73 0.00 36.04 2.69
62 63 2.120909 GTTGATCGCCCCCATGGTG 61.121 63.158 11.73 0.00 46.66 4.17
63 64 2.275418 GTTGATCGCCCCCATGGT 59.725 61.111 11.73 0.00 36.04 3.55
64 65 2.519302 GGTTGATCGCCCCCATGG 60.519 66.667 4.14 4.14 37.09 3.66
65 66 1.825191 CTGGTTGATCGCCCCCATG 60.825 63.158 4.01 0.00 0.00 3.66
66 67 2.308722 ACTGGTTGATCGCCCCCAT 61.309 57.895 4.01 0.00 0.00 4.00
67 68 2.933287 ACTGGTTGATCGCCCCCA 60.933 61.111 4.01 0.00 0.00 4.96
68 69 2.438434 CACTGGTTGATCGCCCCC 60.438 66.667 4.01 0.00 0.00 5.40
69 70 0.394352 ATTCACTGGTTGATCGCCCC 60.394 55.000 4.01 0.00 32.84 5.80
70 71 0.734889 CATTCACTGGTTGATCGCCC 59.265 55.000 4.01 0.00 32.84 6.13
71 72 1.453155 ACATTCACTGGTTGATCGCC 58.547 50.000 0.00 0.00 32.84 5.54
72 73 3.559238 AAACATTCACTGGTTGATCGC 57.441 42.857 0.00 0.00 32.03 4.58
73 74 4.151070 CGAAAACATTCACTGGTTGATCG 58.849 43.478 0.00 0.00 34.11 3.69
74 75 5.108385 ACGAAAACATTCACTGGTTGATC 57.892 39.130 0.00 0.00 34.11 2.92
75 76 5.514274 AACGAAAACATTCACTGGTTGAT 57.486 34.783 0.00 0.00 34.11 2.57
76 77 4.495019 CGAACGAAAACATTCACTGGTTGA 60.495 41.667 0.00 0.00 34.11 3.18
77 78 3.723764 CGAACGAAAACATTCACTGGTTG 59.276 43.478 0.00 0.00 34.11 3.77
78 79 3.790789 GCGAACGAAAACATTCACTGGTT 60.791 43.478 0.00 0.00 35.87 3.67
79 80 2.286772 GCGAACGAAAACATTCACTGGT 60.287 45.455 0.00 0.00 0.00 4.00
80 81 2.032030 AGCGAACGAAAACATTCACTGG 60.032 45.455 0.00 0.00 0.00 4.00
81 82 3.253371 AGCGAACGAAAACATTCACTG 57.747 42.857 0.00 0.00 0.00 3.66
82 83 3.432252 CCTAGCGAACGAAAACATTCACT 59.568 43.478 0.00 0.00 0.00 3.41
83 84 3.185797 ACCTAGCGAACGAAAACATTCAC 59.814 43.478 0.00 0.00 0.00 3.18
84 85 3.395639 ACCTAGCGAACGAAAACATTCA 58.604 40.909 0.00 0.00 0.00 2.57
85 86 4.148891 CAACCTAGCGAACGAAAACATTC 58.851 43.478 0.00 0.00 0.00 2.67
86 87 3.058501 CCAACCTAGCGAACGAAAACATT 60.059 43.478 0.00 0.00 0.00 2.71
87 88 2.482721 CCAACCTAGCGAACGAAAACAT 59.517 45.455 0.00 0.00 0.00 2.71
88 89 1.868498 CCAACCTAGCGAACGAAAACA 59.132 47.619 0.00 0.00 0.00 2.83
89 90 1.869132 ACCAACCTAGCGAACGAAAAC 59.131 47.619 0.00 0.00 0.00 2.43
90 91 1.868498 CACCAACCTAGCGAACGAAAA 59.132 47.619 0.00 0.00 0.00 2.29
91 92 1.504359 CACCAACCTAGCGAACGAAA 58.496 50.000 0.00 0.00 0.00 3.46
92 93 0.947180 GCACCAACCTAGCGAACGAA 60.947 55.000 0.00 0.00 0.00 3.85
93 94 1.373748 GCACCAACCTAGCGAACGA 60.374 57.895 0.00 0.00 0.00 3.85
94 95 2.388232 GGCACCAACCTAGCGAACG 61.388 63.158 0.00 0.00 0.00 3.95
95 96 0.676782 ATGGCACCAACCTAGCGAAC 60.677 55.000 0.00 0.00 0.00 3.95
96 97 0.676466 CATGGCACCAACCTAGCGAA 60.676 55.000 0.00 0.00 0.00 4.70
97 98 1.078497 CATGGCACCAACCTAGCGA 60.078 57.895 0.00 0.00 0.00 4.93
98 99 2.114670 CCATGGCACCAACCTAGCG 61.115 63.158 0.00 0.00 0.00 4.26
99 100 0.749454 CTCCATGGCACCAACCTAGC 60.749 60.000 6.96 0.00 0.00 3.42
100 101 0.749454 GCTCCATGGCACCAACCTAG 60.749 60.000 6.96 0.00 0.00 3.02
101 102 1.302949 GCTCCATGGCACCAACCTA 59.697 57.895 6.96 0.00 0.00 3.08
102 103 2.036256 GCTCCATGGCACCAACCT 59.964 61.111 6.96 0.00 0.00 3.50
103 104 1.880819 CTTGCTCCATGGCACCAACC 61.881 60.000 6.96 0.00 42.27 3.77
104 105 1.588082 CTTGCTCCATGGCACCAAC 59.412 57.895 6.96 0.00 42.27 3.77
105 106 2.277591 GCTTGCTCCATGGCACCAA 61.278 57.895 6.96 8.93 42.27 3.67
106 107 2.677524 GCTTGCTCCATGGCACCA 60.678 61.111 6.96 0.35 42.27 4.17
107 108 0.752743 TATGCTTGCTCCATGGCACC 60.753 55.000 6.96 0.00 42.27 5.01
108 109 0.383231 GTATGCTTGCTCCATGGCAC 59.617 55.000 6.96 1.31 42.27 5.01
109 110 0.752743 GGTATGCTTGCTCCATGGCA 60.753 55.000 6.96 0.00 40.74 4.92
110 111 0.752743 TGGTATGCTTGCTCCATGGC 60.753 55.000 6.96 0.00 0.00 4.40
111 112 1.315690 CTGGTATGCTTGCTCCATGG 58.684 55.000 4.97 4.97 0.00 3.66
112 113 0.666913 GCTGGTATGCTTGCTCCATG 59.333 55.000 0.00 0.00 0.00 3.66
113 114 0.816825 CGCTGGTATGCTTGCTCCAT 60.817 55.000 0.00 0.00 0.00 3.41
114 115 1.450134 CGCTGGTATGCTTGCTCCA 60.450 57.895 0.00 0.26 0.00 3.86
115 116 2.182842 CCGCTGGTATGCTTGCTCC 61.183 63.158 0.00 0.00 0.00 4.70
116 117 2.828128 GCCGCTGGTATGCTTGCTC 61.828 63.158 0.00 0.00 0.00 4.26
117 118 2.825836 GCCGCTGGTATGCTTGCT 60.826 61.111 0.00 0.00 0.00 3.91
118 119 3.892581 GGCCGCTGGTATGCTTGC 61.893 66.667 0.00 0.00 0.00 4.01
119 120 3.211963 GGGCCGCTGGTATGCTTG 61.212 66.667 0.00 0.00 0.00 4.01
120 121 2.572333 AATGGGCCGCTGGTATGCTT 62.572 55.000 0.00 0.00 0.00 3.91
121 122 3.060614 AATGGGCCGCTGGTATGCT 62.061 57.895 0.00 0.00 0.00 3.79
122 123 2.519302 AATGGGCCGCTGGTATGC 60.519 61.111 0.00 0.00 0.00 3.14
123 124 1.453745 ACAATGGGCCGCTGGTATG 60.454 57.895 9.25 0.00 0.00 2.39
124 125 1.453745 CACAATGGGCCGCTGGTAT 60.454 57.895 9.25 0.00 0.00 2.73
125 126 2.045438 CACAATGGGCCGCTGGTA 60.045 61.111 9.25 0.00 0.00 3.25
127 128 4.738998 TCCACAATGGGCCGCTGG 62.739 66.667 9.25 6.03 38.32 4.85
128 129 3.136123 CTCCACAATGGGCCGCTG 61.136 66.667 0.00 0.25 38.32 5.18
131 132 3.136123 CTGCTCCACAATGGGCCG 61.136 66.667 0.00 0.00 38.32 6.13
132 133 2.210144 TACCTGCTCCACAATGGGCC 62.210 60.000 0.00 0.00 38.32 5.80
133 134 0.106519 ATACCTGCTCCACAATGGGC 60.107 55.000 0.00 0.00 38.32 5.36
134 135 1.212688 TCATACCTGCTCCACAATGGG 59.787 52.381 0.00 0.00 38.32 4.00
135 136 2.715749 TCATACCTGCTCCACAATGG 57.284 50.000 0.00 0.00 39.43 3.16
136 137 5.587388 AAAATCATACCTGCTCCACAATG 57.413 39.130 0.00 0.00 0.00 2.82
221 222 6.681729 AGGAAGTAGTTGTTTAGTCCATGA 57.318 37.500 0.00 0.00 0.00 3.07
237 238 9.802039 AGATTGGTTGTAAAATGTTAGGAAGTA 57.198 29.630 0.00 0.00 0.00 2.24
307 311 7.151308 TCATGGTTCGCAATTTAAGTCAAAAT 58.849 30.769 0.00 0.00 0.00 1.82
319 323 5.461032 TTAGGTTTTTCATGGTTCGCAAT 57.539 34.783 0.00 0.00 0.00 3.56
323 327 6.475402 GGCATATTTAGGTTTTTCATGGTTCG 59.525 38.462 0.00 0.00 0.00 3.95
324 328 7.327214 TGGCATATTTAGGTTTTTCATGGTTC 58.673 34.615 0.00 0.00 0.00 3.62
331 335 5.584649 GGGCTTTGGCATATTTAGGTTTTTC 59.415 40.000 0.00 0.00 40.87 2.29
336 340 3.396685 TGGGCTTTGGCATATTTAGGT 57.603 42.857 0.00 0.00 40.87 3.08
338 342 4.734398 TGTTGGGCTTTGGCATATTTAG 57.266 40.909 0.00 0.00 40.87 1.85
339 343 5.012561 AGTTTGTTGGGCTTTGGCATATTTA 59.987 36.000 0.00 0.00 40.87 1.40
342 346 2.905736 AGTTTGTTGGGCTTTGGCATAT 59.094 40.909 0.00 0.00 40.87 1.78
343 347 2.324541 AGTTTGTTGGGCTTTGGCATA 58.675 42.857 0.00 0.00 40.87 3.14
383 387 6.823182 TCAAGATCATGTCATTGTTTATCGGT 59.177 34.615 0.00 0.00 0.00 4.69
388 392 9.897744 GTTTTCTCAAGATCATGTCATTGTTTA 57.102 29.630 0.00 0.00 0.00 2.01
397 401 7.814264 ACTTCAAGTTTTCTCAAGATCATGT 57.186 32.000 0.00 0.00 0.00 3.21
441 445 5.860641 CAATTTTGCAAAGTATCATGGCAC 58.139 37.500 12.41 0.00 33.66 5.01
457 461 1.813786 CCCAAAGCCATGGCAATTTTG 59.186 47.619 37.18 32.72 44.88 2.44
458 462 1.704070 TCCCAAAGCCATGGCAATTTT 59.296 42.857 37.18 25.36 44.88 1.82
459 463 1.279846 CTCCCAAAGCCATGGCAATTT 59.720 47.619 37.18 26.07 44.88 1.82
472 476 9.816354 GCAAATTTAAGATATAAAGCTCCCAAA 57.184 29.630 0.00 0.00 0.00 3.28
487 491 7.967854 CGAATATGTCCAGTTGCAAATTTAAGA 59.032 33.333 0.00 0.00 0.00 2.10
493 497 4.269183 TCCGAATATGTCCAGTTGCAAAT 58.731 39.130 0.00 0.00 0.00 2.32
499 503 6.419791 TGGTAATTTCCGAATATGTCCAGTT 58.580 36.000 0.00 0.00 0.00 3.16
508 512 8.746052 ATTTCTGACATGGTAATTTCCGAATA 57.254 30.769 0.00 0.00 0.00 1.75
512 516 7.312154 TGAAATTTCTGACATGGTAATTTCCG 58.688 34.615 18.64 0.00 41.25 4.30
518 522 8.298854 CACATTCTGAAATTTCTGACATGGTAA 58.701 33.333 28.35 17.27 35.32 2.85
520 524 6.266103 ACACATTCTGAAATTTCTGACATGGT 59.734 34.615 28.35 23.93 35.32 3.55
521 525 6.684686 ACACATTCTGAAATTTCTGACATGG 58.315 36.000 28.35 23.60 35.32 3.66
523 527 7.173218 ACGTACACATTCTGAAATTTCTGACAT 59.827 33.333 22.87 16.90 35.32 3.06
530 535 4.753107 ACCGACGTACACATTCTGAAATTT 59.247 37.500 0.00 0.00 0.00 1.82
545 550 1.303888 AGCCTTCTCCACCGACGTA 60.304 57.895 0.00 0.00 0.00 3.57
559 564 1.456287 GAACTTCCCACACCAGCCT 59.544 57.895 0.00 0.00 0.00 4.58
565 570 2.033602 CCCCGGAACTTCCCACAC 59.966 66.667 0.73 0.00 31.13 3.82
566 571 2.122324 TCCCCGGAACTTCCCACA 60.122 61.111 0.73 0.00 31.13 4.17
569 574 3.408853 CCCTCCCCGGAACTTCCC 61.409 72.222 0.73 0.00 31.13 3.97
594 599 0.733729 CTCCACTCTTAGTCGTCGGG 59.266 60.000 0.00 0.00 0.00 5.14
609 614 3.706389 TTATCACATCCCTCCTCTCCA 57.294 47.619 0.00 0.00 0.00 3.86
610 615 6.352565 CCATTATTATCACATCCCTCCTCTCC 60.353 46.154 0.00 0.00 0.00 3.71
617 622 6.094302 ACCTCTCCATTATTATCACATCCCT 58.906 40.000 0.00 0.00 0.00 4.20
619 624 7.009179 TGACCTCTCCATTATTATCACATCC 57.991 40.000 0.00 0.00 0.00 3.51
630 635 7.283127 GCACAAATCTTATTGACCTCTCCATTA 59.717 37.037 0.00 0.00 34.38 1.90
640 645 6.755141 AGATGCAATGCACAAATCTTATTGAC 59.245 34.615 11.23 0.00 43.04 3.18
641 646 6.754675 CAGATGCAATGCACAAATCTTATTGA 59.245 34.615 11.23 0.00 43.04 2.57
642 647 6.754675 TCAGATGCAATGCACAAATCTTATTG 59.245 34.615 11.23 0.00 43.04 1.90
643 648 6.755141 GTCAGATGCAATGCACAAATCTTATT 59.245 34.615 11.23 0.00 43.04 1.40
644 649 6.270815 GTCAGATGCAATGCACAAATCTTAT 58.729 36.000 11.23 0.00 43.04 1.73
652 694 0.798159 GTCGTCAGATGCAATGCACA 59.202 50.000 11.23 0.00 43.04 4.57
704 746 7.973944 GTGAAAATGTTATCCAGGGAATGTTAC 59.026 37.037 0.00 0.00 0.00 2.50
705 747 7.893302 AGTGAAAATGTTATCCAGGGAATGTTA 59.107 33.333 0.00 0.00 0.00 2.41
706 748 6.725834 AGTGAAAATGTTATCCAGGGAATGTT 59.274 34.615 0.00 0.00 0.00 2.71
708 750 6.780457 AGTGAAAATGTTATCCAGGGAATG 57.220 37.500 0.00 0.00 0.00 2.67
715 757 6.653320 ACGCTCTAAAGTGAAAATGTTATCCA 59.347 34.615 0.00 0.00 36.80 3.41
736 5351 0.953727 AAATGCACATCACACACGCT 59.046 45.000 0.00 0.00 0.00 5.07
800 5420 1.228769 TGGCTATCTATCGGGCCGT 60.229 57.895 27.32 15.73 46.72 5.68
845 5465 0.243636 GCGTTAGGGTTTTGCTGCAT 59.756 50.000 1.84 0.00 0.00 3.96
846 5466 1.657556 GCGTTAGGGTTTTGCTGCA 59.342 52.632 0.00 0.00 0.00 4.41
891 5511 1.672881 GATGGAAATGTTGAGGAGCGG 59.327 52.381 0.00 0.00 0.00 5.52
974 5603 4.806339 AAGGAGGGGGAGCGGGAG 62.806 72.222 0.00 0.00 0.00 4.30
975 5604 4.348495 AAAGGAGGGGGAGCGGGA 62.348 66.667 0.00 0.00 0.00 5.14
976 5605 3.798511 GAAAGGAGGGGGAGCGGG 61.799 72.222 0.00 0.00 0.00 6.13
977 5606 2.689034 AGAAAGGAGGGGGAGCGG 60.689 66.667 0.00 0.00 0.00 5.52
978 5607 2.736826 GGAGAAAGGAGGGGGAGCG 61.737 68.421 0.00 0.00 0.00 5.03
979 5608 1.208165 TTGGAGAAAGGAGGGGGAGC 61.208 60.000 0.00 0.00 0.00 4.70
980 5609 0.621082 GTTGGAGAAAGGAGGGGGAG 59.379 60.000 0.00 0.00 0.00 4.30
981 5610 0.104144 TGTTGGAGAAAGGAGGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
982 5611 1.002857 ATGTTGGAGAAAGGAGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
983 5612 1.341383 CCATGTTGGAGAAAGGAGGGG 60.341 57.143 0.00 0.00 40.96 4.79
984 5613 1.957113 GCCATGTTGGAGAAAGGAGGG 60.957 57.143 0.00 0.00 40.96 4.30
985 5614 1.005215 AGCCATGTTGGAGAAAGGAGG 59.995 52.381 0.00 0.00 40.96 4.30
986 5615 2.026449 AGAGCCATGTTGGAGAAAGGAG 60.026 50.000 0.00 0.00 40.96 3.69
987 5616 1.988107 AGAGCCATGTTGGAGAAAGGA 59.012 47.619 0.00 0.00 40.96 3.36
988 5617 2.363683 GAGAGCCATGTTGGAGAAAGG 58.636 52.381 0.00 0.00 40.96 3.11
989 5618 2.290514 TGGAGAGCCATGTTGGAGAAAG 60.291 50.000 0.00 0.00 40.96 2.62
990 5619 1.704628 TGGAGAGCCATGTTGGAGAAA 59.295 47.619 0.00 0.00 40.96 2.52
1008 5637 1.730501 TTCGCTTCTTGCTGATCTGG 58.269 50.000 1.46 0.00 40.11 3.86
1065 5694 5.324784 TCTACATGTCGTGCTAATCAAGT 57.675 39.130 0.00 0.00 0.00 3.16
1299 5928 0.247537 CGGCGTCGAAAACAATAGGC 60.248 55.000 1.44 0.00 39.00 3.93
1327 5956 1.299850 GCCACCGGAGCAACAAAAC 60.300 57.895 9.46 0.00 0.00 2.43
1358 5987 2.657237 CCCTTCTCGCCTGAACGT 59.343 61.111 0.00 0.00 0.00 3.99
1397 6026 2.664851 CGCTTCTGCACCACCGAA 60.665 61.111 0.00 0.00 39.64 4.30
1583 6216 5.720202 TGTGAAGATGACATGGTAGTACAC 58.280 41.667 2.06 0.00 0.00 2.90
1584 6217 5.993748 TGTGAAGATGACATGGTAGTACA 57.006 39.130 2.06 0.00 0.00 2.90
1664 6305 3.690460 CTTACAGAAAGCAATGGAGGGT 58.310 45.455 0.00 0.00 0.00 4.34
1786 6440 6.929606 ACCTATTTGCTTTATAGATGACGTCC 59.070 38.462 14.12 0.00 0.00 4.79
1787 6441 7.652105 TGACCTATTTGCTTTATAGATGACGTC 59.348 37.037 9.11 9.11 0.00 4.34
1812 6466 4.385447 CCGACACAAAGTTGGCATAAAATG 59.615 41.667 0.00 0.00 44.72 2.32
1953 6607 5.885912 AGCAATTTTATATCCGGACACAAGT 59.114 36.000 6.12 0.00 0.00 3.16
1962 6616 8.783093 TGATTCACCTAAGCAATTTTATATCCG 58.217 33.333 0.00 0.00 28.46 4.18
1981 6635 6.595772 AAGACTCGCAATAAGATGATTCAC 57.404 37.500 0.00 0.00 0.00 3.18
1987 6641 8.554528 ACAATTGATAAGACTCGCAATAAGATG 58.445 33.333 13.59 0.00 31.30 2.90
2018 6677 2.611518 CAAGTAGAAAGAGAGCACCCG 58.388 52.381 0.00 0.00 0.00 5.28
2108 6767 4.755123 CGTTGGTACTGTTCTCTCCAAATT 59.245 41.667 0.00 0.00 39.39 1.82
2109 6768 4.039973 TCGTTGGTACTGTTCTCTCCAAAT 59.960 41.667 0.00 0.00 39.39 2.32
2111 6770 2.960384 TCGTTGGTACTGTTCTCTCCAA 59.040 45.455 0.00 0.00 36.08 3.53
2120 6779 2.806244 GCACAAGAATCGTTGGTACTGT 59.194 45.455 0.00 0.00 0.00 3.55
2121 6780 2.159627 GGCACAAGAATCGTTGGTACTG 59.840 50.000 0.00 0.00 0.00 2.74
2145 6820 8.737168 TTGCTTTATAGATGACATAGCAAACT 57.263 30.769 15.40 0.00 42.23 2.66
2149 6824 9.440773 CCTATTTGCTTTATAGATGACATAGCA 57.559 33.333 4.55 4.55 35.56 3.49
2180 6855 3.477504 CCGACACAAAGTTGGCATG 57.522 52.632 0.00 0.00 44.72 4.06
2268 6943 6.316390 GGTGATGAGGACAACCAGTTATAAAG 59.684 42.308 0.00 0.00 38.94 1.85
2269 6944 6.012858 AGGTGATGAGGACAACCAGTTATAAA 60.013 38.462 0.00 0.00 38.94 1.40
2272 6947 3.846588 AGGTGATGAGGACAACCAGTTAT 59.153 43.478 0.00 0.00 38.94 1.89
2273 6948 3.248024 AGGTGATGAGGACAACCAGTTA 58.752 45.455 0.00 0.00 38.94 2.24
2290 6966 3.878699 AGAATTGCAAAAGCCAAAAGGTG 59.121 39.130 1.71 0.00 0.00 4.00
2304 6980 6.072175 AGCCGTAACATAAGAAAAGAATTGCA 60.072 34.615 0.00 0.00 0.00 4.08
2309 6985 5.553123 TCCAGCCGTAACATAAGAAAAGAA 58.447 37.500 0.00 0.00 0.00 2.52
2325 7001 3.575965 AGCAATTTTAACTTCCAGCCG 57.424 42.857 0.00 0.00 0.00 5.52
2329 7005 9.474920 CAATTCAGTTAGCAATTTTAACTTCCA 57.525 29.630 8.66 0.01 38.85 3.53
2478 7154 9.921637 AACAAGAAAAACTATTGTCAACAGAAA 57.078 25.926 0.00 0.00 36.18 2.52
2512 7188 3.549794 AGGACATGAGCTAAATTGCCTC 58.450 45.455 0.00 0.00 0.00 4.70
2531 7207 3.629087 AGAAATCAGGAATGCTCCAAGG 58.371 45.455 0.00 0.00 45.24 3.61
2534 7210 3.782523 ACCTAGAAATCAGGAATGCTCCA 59.217 43.478 0.00 0.00 45.24 3.86
2535 7211 4.429854 ACCTAGAAATCAGGAATGCTCC 57.570 45.455 0.00 0.00 42.81 4.70
2608 7286 5.129155 GCCAGAAGAGATCATATAGCCATCT 59.871 44.000 0.00 0.00 0.00 2.90
2826 7507 2.171003 GATGGTCCTTGTTTCCCCTTG 58.829 52.381 0.00 0.00 0.00 3.61
2845 7526 1.729586 AGGTCAGGCAAAGGTGTAGA 58.270 50.000 0.00 0.00 0.00 2.59
2950 7633 2.005370 TATACCCCTAGGCAGAACCG 57.995 55.000 2.05 0.00 46.52 4.44
2952 7635 4.944177 TCCTATATACCCCTAGGCAGAAC 58.056 47.826 2.05 0.00 35.46 3.01
2953 7636 4.611150 ACTCCTATATACCCCTAGGCAGAA 59.389 45.833 2.05 0.00 35.46 3.02
2972 7655 2.067013 GCGTCAGTCAACCTAAACTCC 58.933 52.381 0.00 0.00 0.00 3.85
2990 7673 5.227908 ACTACATAATCCGAAACCATAGCG 58.772 41.667 0.00 0.00 0.00 4.26
3035 7719 2.093869 GCCCTTTCATACCAGTACACGA 60.094 50.000 0.00 0.00 0.00 4.35
3036 7720 2.093658 AGCCCTTTCATACCAGTACACG 60.094 50.000 0.00 0.00 0.00 4.49
3059 7743 9.739276 ATACTGATGATTGAACTTCAAAAGGTA 57.261 29.630 8.28 6.85 40.12 3.08
3085 7769 8.000709 ACCTGAAATCTTGAAGCATATATTGGA 58.999 33.333 0.00 0.00 0.00 3.53
3087 7771 9.459640 CAACCTGAAATCTTGAAGCATATATTG 57.540 33.333 0.00 0.00 0.00 1.90
3100 7784 5.481473 ACAATACCATGCAACCTGAAATCTT 59.519 36.000 0.00 0.00 0.00 2.40
3108 7792 5.163519 GCATTCTAACAATACCATGCAACCT 60.164 40.000 0.00 0.00 37.54 3.50
3109 7793 5.043248 GCATTCTAACAATACCATGCAACC 58.957 41.667 0.00 0.00 37.54 3.77
3131 7815 5.407691 CACATCACTGTATATCAGACCATGC 59.592 44.000 8.56 0.00 46.27 4.06
3133 7817 6.737720 ACACATCACTGTATATCAGACCAT 57.262 37.500 8.56 0.00 46.27 3.55
3233 7920 5.677091 GCAGCATGGAACCTACAAATTACTG 60.677 44.000 0.00 0.00 35.86 2.74
3254 7941 4.177165 TGATGTGCATAAAACTTGGCAG 57.823 40.909 0.00 0.00 36.86 4.85
3290 7984 8.997323 AGCATATAAAATCTTACTGCAGTCATC 58.003 33.333 25.56 0.15 34.03 2.92
3294 7988 9.401058 AGAAAGCATATAAAATCTTACTGCAGT 57.599 29.630 25.12 25.12 34.03 4.40
3297 7991 8.499514 GCAGAAAGCATATAAAATCTTACTGC 57.500 34.615 0.00 0.00 44.79 4.40
3334 8028 4.917906 AAAGGCAGATTAGTTGAGAGGT 57.082 40.909 0.00 0.00 0.00 3.85
3367 8063 4.377839 TGGAAACTGAAAACAATCGCAA 57.622 36.364 0.00 0.00 0.00 4.85
3378 8074 7.517614 TTGTAATGCTGTTATGGAAACTGAA 57.482 32.000 0.00 0.00 0.00 3.02
3381 8077 8.458843 GTGTATTGTAATGCTGTTATGGAAACT 58.541 33.333 0.00 0.00 0.00 2.66
3398 8094 5.483685 ACAGAGAAGGCAAGTGTATTGTA 57.516 39.130 0.00 0.00 0.00 2.41
3406 8102 3.879892 GACAAAGAACAGAGAAGGCAAGT 59.120 43.478 0.00 0.00 0.00 3.16
3462 8159 6.460537 GGGAGGAAAAGTGTAACAAATTCGTT 60.461 38.462 0.00 0.00 41.43 3.85
3474 8171 4.455070 AGCTAAAAGGGAGGAAAAGTGT 57.545 40.909 0.00 0.00 0.00 3.55
3495 8193 6.237901 ACTGATACACACTTATCCTGCAAAA 58.762 36.000 0.00 0.00 0.00 2.44
3528 8227 5.571784 TTCAGCCAGAAATGCATAGAAAG 57.428 39.130 0.00 0.00 32.05 2.62
3531 8230 4.397103 CACTTTCAGCCAGAAATGCATAGA 59.603 41.667 0.00 0.00 44.75 1.98
3544 8243 1.322442 AGCAGGAAACACTTTCAGCC 58.678 50.000 7.40 0.00 40.71 4.85
3640 8339 1.674962 GATGCAGTCATCTTGGAAGGC 59.325 52.381 0.00 0.00 44.38 4.35
3658 8360 5.408909 CGATGCAAAGCAGATAGATTCAGAT 59.591 40.000 0.00 0.00 43.65 2.90
3681 8383 6.582672 GGGAGAAAATAGCAAAAGAACTTTCG 59.417 38.462 0.21 0.00 31.45 3.46
3682 8384 7.661968 AGGGAGAAAATAGCAAAAGAACTTTC 58.338 34.615 0.21 0.00 31.45 2.62
3683 8385 7.603180 AGGGAGAAAATAGCAAAAGAACTTT 57.397 32.000 0.00 0.00 0.00 2.66
3689 8391 5.406477 GCAACAAGGGAGAAAATAGCAAAAG 59.594 40.000 0.00 0.00 0.00 2.27
3879 8581 9.003658 GGCAGTATGGGCATATATATAACAATC 57.996 37.037 0.00 0.00 35.86 2.67
3880 8582 8.727149 AGGCAGTATGGGCATATATATAACAAT 58.273 33.333 0.00 0.00 35.86 2.71
3882 8584 7.690454 AGGCAGTATGGGCATATATATAACA 57.310 36.000 0.00 0.00 35.86 2.41
3883 8585 8.840321 CAAAGGCAGTATGGGCATATATATAAC 58.160 37.037 0.00 0.00 35.86 1.89
3885 8587 6.998074 GCAAAGGCAGTATGGGCATATATATA 59.002 38.462 0.00 0.00 40.72 0.86
3886 8588 5.829924 GCAAAGGCAGTATGGGCATATATAT 59.170 40.000 0.00 0.00 40.72 0.86
3888 8590 4.019174 GCAAAGGCAGTATGGGCATATAT 58.981 43.478 0.00 0.00 40.72 0.86
3890 8592 2.242043 GCAAAGGCAGTATGGGCATAT 58.758 47.619 0.00 0.00 40.72 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.