Multiple sequence alignment - TraesCS2A01G171700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G171700 chr2A 100.000 7076 0 0 1 7076 127202888 127195813 0.000000e+00 13068.0
1 TraesCS2A01G171700 chr2A 99.286 140 1 0 3958 4097 127198789 127198650 3.280000e-63 254.0
2 TraesCS2A01G171700 chr2A 99.286 140 1 0 4100 4239 127198931 127198792 3.280000e-63 254.0
3 TraesCS2A01G171700 chr2A 92.073 164 11 1 4407 4570 7920891 7921052 5.520000e-56 230.0
4 TraesCS2A01G171700 chr2A 90.446 157 15 0 4566 4722 66799842 66799998 2.590000e-49 207.0
5 TraesCS2A01G171700 chr2D 95.073 3308 105 18 837 4097 122867877 122864581 0.000000e+00 5153.0
6 TraesCS2A01G171700 chr2D 95.164 1220 41 10 4100 5314 122864722 122863516 0.000000e+00 1910.0
7 TraesCS2A01G171700 chr2D 91.393 1220 49 22 5312 6507 122863403 122862216 0.000000e+00 1620.0
8 TraesCS2A01G171700 chr2D 93.096 449 19 4 6634 7076 122862103 122861661 0.000000e+00 647.0
9 TraesCS2A01G171700 chr2D 90.476 168 16 0 4405 4572 498473160 498472993 9.240000e-54 222.0
10 TraesCS2A01G171700 chr2B 93.298 2089 97 23 1 2055 175634688 175632609 0.000000e+00 3042.0
11 TraesCS2A01G171700 chr2B 93.510 1849 64 17 2302 4097 175632406 175630561 0.000000e+00 2699.0
12 TraesCS2A01G171700 chr2B 92.032 866 36 13 5666 6520 175629151 175628308 0.000000e+00 1186.0
13 TraesCS2A01G171700 chr2B 94.149 752 29 9 4540 5287 175630337 175629597 0.000000e+00 1131.0
14 TraesCS2A01G171700 chr2B 92.514 521 24 5 6559 7076 175628307 175627799 0.000000e+00 732.0
15 TraesCS2A01G171700 chr2B 94.809 366 18 1 4100 4464 175630700 175630335 2.860000e-158 569.0
16 TraesCS2A01G171700 chr2B 94.203 345 14 3 5326 5668 175629604 175629264 8.130000e-144 521.0
17 TraesCS2A01G171700 chr2B 95.031 161 8 0 1940 2100 175632573 175632413 3.280000e-63 254.0
18 TraesCS2A01G171700 chr2B 91.228 171 14 1 4403 4572 729635350 729635180 1.540000e-56 231.0
19 TraesCS2A01G171700 chr2B 94.253 87 5 0 2503 2589 247368537 247368623 4.450000e-27 134.0
20 TraesCS2A01G171700 chr2B 100.000 32 0 0 2069 2100 175632608 175632577 7.670000e-05 60.2
21 TraesCS2A01G171700 chr7D 92.857 238 17 0 1 238 27353741 27353978 5.250000e-91 346.0
22 TraesCS2A01G171700 chr7D 92.857 238 17 0 1 238 597514961 597515198 5.250000e-91 346.0
23 TraesCS2A01G171700 chr7D 91.803 244 20 0 1 244 39863092 39862849 2.440000e-89 340.0
24 TraesCS2A01G171700 chr7D 92.121 165 13 0 4404 4568 566026739 566026575 4.270000e-57 233.0
25 TraesCS2A01G171700 chr7D 91.566 166 13 1 4407 4572 183790423 183790259 1.990000e-55 228.0
26 TraesCS2A01G171700 chr7D 90.506 158 15 0 4570 4727 197927160 197927003 7.190000e-50 209.0
27 TraesCS2A01G171700 chr6A 92.857 238 17 0 1 238 211283492 211283255 5.250000e-91 346.0
28 TraesCS2A01G171700 chr6A 89.308 159 13 3 1828 1985 47466795 47466950 5.600000e-46 196.0
29 TraesCS2A01G171700 chr6A 91.860 86 7 0 2503 2588 263872886 263872801 3.470000e-23 121.0
30 TraesCS2A01G171700 chr4B 92.531 241 18 0 1 241 20346317 20346557 5.250000e-91 346.0
31 TraesCS2A01G171700 chr4B 91.875 160 12 1 4570 4729 483581988 483582146 9.240000e-54 222.0
32 TraesCS2A01G171700 chr4B 91.925 161 10 2 4562 4722 613321818 613321975 9.240000e-54 222.0
33 TraesCS2A01G171700 chr4B 84.878 205 26 5 4514 4717 78607821 78607621 1.200000e-47 202.0
34 TraesCS2A01G171700 chr4A 92.531 241 18 0 1 241 591538872 591539112 5.250000e-91 346.0
35 TraesCS2A01G171700 chr4A 95.294 85 4 0 2504 2588 697388889 697388805 1.240000e-27 135.0
36 TraesCS2A01G171700 chr1D 92.213 244 19 0 1 244 422494464 422494221 5.250000e-91 346.0
37 TraesCS2A01G171700 chr1D 92.667 150 10 1 4573 4722 7349852 7349704 1.550000e-51 215.0
38 TraesCS2A01G171700 chr1D 88.172 93 11 0 2500 2592 147896326 147896234 2.090000e-20 111.0
39 TraesCS2A01G171700 chr6D 91.837 245 18 2 1 244 4870046 4870289 2.440000e-89 340.0
40 TraesCS2A01G171700 chr6D 92.593 162 12 0 4407 4568 351233596 351233435 4.270000e-57 233.0
41 TraesCS2A01G171700 chr5D 93.125 160 10 1 1828 1986 399614527 399614686 4.270000e-57 233.0
42 TraesCS2A01G171700 chr5D 87.500 96 10 1 2504 2599 421531409 421531316 7.500000e-20 110.0
43 TraesCS2A01G171700 chr5A 91.617 167 14 0 4403 4569 653299605 653299439 1.540000e-56 231.0
44 TraesCS2A01G171700 chr5B 92.500 160 11 1 1828 1986 479726840 479726999 1.990000e-55 228.0
45 TraesCS2A01G171700 chr3A 92.994 157 7 3 1831 1986 675873172 675873019 7.140000e-55 226.0
46 TraesCS2A01G171700 chr3A 89.375 160 16 1 1825 1984 621328861 621329019 4.330000e-47 200.0
47 TraesCS2A01G171700 chr3A 88.811 143 10 2 6103 6245 51832294 51832430 3.390000e-38 171.0
48 TraesCS2A01G171700 chr3A 90.698 86 8 0 2500 2585 100417850 100417765 1.610000e-21 115.0
49 TraesCS2A01G171700 chr1B 90.588 170 15 1 4399 4568 314565531 314565699 2.570000e-54 224.0
50 TraesCS2A01G171700 chr4D 90.533 169 12 3 4561 4728 483111329 483111494 3.320000e-53 220.0
51 TraesCS2A01G171700 chr4D 88.344 163 17 2 1828 1988 32019639 32019801 2.010000e-45 195.0
52 TraesCS2A01G171700 chr3B 89.744 156 15 1 1831 1985 262201817 262201662 1.560000e-46 198.0
53 TraesCS2A01G171700 chr3B 90.210 143 8 3 6103 6245 368867798 368867662 1.570000e-41 182.0
54 TraesCS2A01G171700 chrUn 88.811 143 10 2 6103 6245 251407666 251407530 3.390000e-38 171.0
55 TraesCS2A01G171700 chrUn 88.811 143 10 2 6103 6245 345806988 345807124 3.390000e-38 171.0
56 TraesCS2A01G171700 chr6B 89.130 138 9 4 6108 6245 613164451 613164320 4.390000e-37 167.0
57 TraesCS2A01G171700 chr3D 91.011 89 7 1 2500 2588 84110269 84110182 1.250000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G171700 chr2A 127195813 127202888 7075 True 13068.000000 13068 100.0000 1 7076 1 chr2A.!!$R1 7075
1 TraesCS2A01G171700 chr2D 122861661 122867877 6216 True 2332.500000 5153 93.6815 837 7076 4 chr2D.!!$R2 6239
2 TraesCS2A01G171700 chr2B 175627799 175634688 6889 True 1132.688889 3042 94.3940 1 7076 9 chr2B.!!$R2 7075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 200 0.028505 CACAACAGTGCACAGACTGC 59.971 55.000 21.04 0.00 46.28 4.40 F
672 684 0.033991 AAGCCTCTCTCCTCTACGCA 60.034 55.000 0.00 0.00 0.00 5.24 F
884 900 1.135939 GTGTGCGGGCGGAAATAAC 59.864 57.895 0.00 0.00 0.00 1.89 F
980 997 1.305633 TCCCCTGAGCTCTGGACTG 60.306 63.158 34.33 23.11 37.15 3.51 F
2146 2342 1.153369 ATTGCGCGGTAGTGAGCAT 60.153 52.632 8.83 0.00 39.50 3.79 F
3243 3485 0.251297 CAACCTCACATGGGCTTCCA 60.251 55.000 0.00 0.00 45.91 3.53 F
3546 3788 2.767505 TCGAGAAGCTTGAGTTTTCCC 58.232 47.619 2.10 0.00 0.00 3.97 F
4177 4438 0.182775 GCCCAGATTGACCCCGTAAT 59.817 55.000 0.00 0.00 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1902 1.064825 GAAACTCCCTTCCCAGACCA 58.935 55.000 0.00 0.00 0.00 4.02 R
2128 2324 1.153369 ATGCTCACTACCGCGCAAT 60.153 52.632 8.75 0.00 35.83 3.56 R
2129 2325 2.100031 CATGCTCACTACCGCGCAA 61.100 57.895 8.75 0.00 35.83 4.85 R
2703 2909 2.594303 CCGAGTGTTTGCTGGCCA 60.594 61.111 4.71 4.71 0.00 5.36 R
3544 3786 0.179089 CTCAACCTCGAGAGCATGGG 60.179 60.000 15.71 3.09 34.79 4.00 R
4158 4419 0.182775 ATTACGGGGTCAATCTGGGC 59.817 55.000 0.00 0.00 0.00 5.36 R
4917 5182 1.312815 GCTCATGGTACCAATGGCTC 58.687 55.000 20.76 2.64 0.00 4.70 R
6147 6657 1.378882 CCCACAATGGATGTCAGGCG 61.379 60.000 0.00 0.00 41.46 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.608506 CGCGGTCATGCATAACTATAGTC 59.391 47.826 5.70 0.00 34.15 2.59
63 64 8.193438 GCTCTATTTCATAAACCAGAAGCAAAT 58.807 33.333 0.00 0.00 0.00 2.32
69 70 3.369546 AAACCAGAAGCAAATCAACCG 57.630 42.857 0.00 0.00 0.00 4.44
82 83 1.698506 TCAACCGCCCTTCACAATTT 58.301 45.000 0.00 0.00 0.00 1.82
86 87 0.527565 CCGCCCTTCACAATTTCTGG 59.472 55.000 0.00 0.00 0.00 3.86
109 110 5.531287 GGACTGTCTAAACCAACAAAGATGT 59.469 40.000 7.85 0.00 43.14 3.06
135 136 9.249053 TCAACTCAAATACTTCTAGAGATCAGT 57.751 33.333 0.00 0.71 0.00 3.41
144 145 3.149981 TCTAGAGATCAGTGCCCATACG 58.850 50.000 0.00 0.00 0.00 3.06
153 154 3.451793 TGCCCATACGCACTTGTAG 57.548 52.632 0.00 0.00 32.62 2.74
154 155 0.107897 TGCCCATACGCACTTGTAGG 60.108 55.000 0.00 0.00 32.62 3.18
155 156 0.107848 GCCCATACGCACTTGTAGGT 60.108 55.000 0.00 0.00 0.00 3.08
156 157 1.677820 GCCCATACGCACTTGTAGGTT 60.678 52.381 0.00 0.00 0.00 3.50
163 166 1.195448 CGCACTTGTAGGTTGCAGAAG 59.805 52.381 0.00 0.00 0.00 2.85
183 186 2.618709 AGCACTAAAGCTTCACCACAAC 59.381 45.455 0.00 0.00 43.70 3.32
197 200 0.028505 CACAACAGTGCACAGACTGC 59.971 55.000 21.04 0.00 46.28 4.40
206 209 0.867746 GCACAGACTGCAACGAATGA 59.132 50.000 1.25 0.00 46.29 2.57
208 211 2.908634 CACAGACTGCAACGAATGAAC 58.091 47.619 1.25 0.00 0.00 3.18
209 212 2.287644 CACAGACTGCAACGAATGAACA 59.712 45.455 1.25 0.00 0.00 3.18
211 214 3.565482 ACAGACTGCAACGAATGAACAAT 59.435 39.130 1.25 0.00 0.00 2.71
298 308 5.960113 TGCAGTGAAAACTAACACAAACAT 58.040 33.333 0.00 0.00 39.18 2.71
358 370 0.940126 CATTCCCGATAGCACACAGC 59.060 55.000 0.00 0.00 46.19 4.40
409 421 5.924825 ACCATATAAACTAAATCTCGCGTCC 59.075 40.000 5.77 0.00 0.00 4.79
416 428 4.040376 ACTAAATCTCGCGTCCGATTAAC 58.960 43.478 5.77 0.00 43.47 2.01
417 429 1.474017 AATCTCGCGTCCGATTAACG 58.526 50.000 5.77 0.00 43.47 3.18
430 442 6.183360 CGTCCGATTAACGTTTATTCAGAACA 60.183 38.462 5.91 0.00 40.78 3.18
490 502 2.875672 GCTTCTTGTCCATGTACCTGCA 60.876 50.000 0.00 0.00 0.00 4.41
492 504 3.719268 TCTTGTCCATGTACCTGCAAT 57.281 42.857 0.00 0.00 0.00 3.56
498 510 1.340893 CCATGTACCTGCAATCCACCA 60.341 52.381 0.00 0.00 0.00 4.17
501 513 1.003118 TGTACCTGCAATCCACCAGAC 59.997 52.381 0.00 0.00 0.00 3.51
507 519 1.686052 TGCAATCCACCAGACCAAAAC 59.314 47.619 0.00 0.00 0.00 2.43
508 520 1.686052 GCAATCCACCAGACCAAAACA 59.314 47.619 0.00 0.00 0.00 2.83
529 541 8.688747 AAACAAAATTAGCATCAAAATCCCAA 57.311 26.923 0.00 0.00 0.00 4.12
539 551 4.829064 TCAAAATCCCAACGAAACAGAG 57.171 40.909 0.00 0.00 0.00 3.35
541 553 4.884744 TCAAAATCCCAACGAAACAGAGAA 59.115 37.500 0.00 0.00 0.00 2.87
545 557 4.625972 TCCCAACGAAACAGAGAAAAAC 57.374 40.909 0.00 0.00 0.00 2.43
557 569 3.020984 AGAGAAAAACCCAAGCGAAACA 58.979 40.909 0.00 0.00 0.00 2.83
568 580 3.125146 CCAAGCGAAACAGATCGAATTCA 59.875 43.478 6.22 0.00 45.48 2.57
570 582 4.590400 AGCGAAACAGATCGAATTCAAG 57.410 40.909 6.22 0.00 45.48 3.02
582 594 3.751175 TCGAATTCAAGATGAAAAGGCGT 59.249 39.130 6.22 0.00 40.12 5.68
670 682 1.679153 GGAAAGCCTCTCTCCTCTACG 59.321 57.143 0.00 0.00 0.00 3.51
672 684 0.033991 AAGCCTCTCTCCTCTACGCA 60.034 55.000 0.00 0.00 0.00 5.24
760 775 5.433526 CCTAGATATAAGACGAGGGAGGAG 58.566 50.000 0.00 0.00 0.00 3.69
813 829 2.892025 GCTGAAGGGCCAATGACAT 58.108 52.632 6.18 0.00 0.00 3.06
884 900 1.135939 GTGTGCGGGCGGAAATAAC 59.864 57.895 0.00 0.00 0.00 1.89
980 997 1.305633 TCCCCTGAGCTCTGGACTG 60.306 63.158 34.33 23.11 37.15 3.51
1226 1255 3.809832 CGTCCTAGCTTATGGTTTGATGG 59.190 47.826 0.00 0.00 0.00 3.51
1444 1474 2.368221 CAAACTCCCAAGCCAAATGGAA 59.632 45.455 2.98 0.00 40.56 3.53
1492 1531 5.353123 TGGTAGAAATTGTTCAGCCGTATTC 59.647 40.000 0.00 0.00 36.09 1.75
1511 1550 9.091784 CCGTATTCATAGATTTACCATGATCAG 57.908 37.037 0.09 0.00 0.00 2.90
1585 1624 4.265073 GGAACACCTAGCAAAGATCACAT 58.735 43.478 0.00 0.00 0.00 3.21
1662 1701 6.887002 ACTAGGGATCCAGATTGAAAAGAAAC 59.113 38.462 15.23 0.00 0.00 2.78
1706 1745 7.702772 GGAATATCTCCGCTGTATATGTTACTG 59.297 40.741 0.00 0.00 33.37 2.74
1755 1799 4.659111 TTCGGAAATCAAGATAGCGGTA 57.341 40.909 0.00 0.00 0.00 4.02
1793 1837 5.295045 ACGAAGTTCAGGTTAAAACGACAAT 59.705 36.000 3.32 0.00 37.78 2.71
1809 1853 3.424829 CGACAATGGGTGAAAGATGAACG 60.425 47.826 0.00 0.00 0.00 3.95
1810 1854 3.486383 ACAATGGGTGAAAGATGAACGT 58.514 40.909 0.00 0.00 0.00 3.99
1885 1930 3.181410 TGGGAAGGGAGTTTCTAGACAGA 60.181 47.826 0.00 0.00 0.00 3.41
2056 2252 4.515028 TCTTGCCTTGATCCATCTTGAT 57.485 40.909 0.00 0.00 0.00 2.57
2145 2341 2.100031 CATTGCGCGGTAGTGAGCA 61.100 57.895 8.83 0.00 37.89 4.26
2146 2342 1.153369 ATTGCGCGGTAGTGAGCAT 60.153 52.632 8.83 0.00 39.50 3.79
2240 2436 9.760926 AGTCTACATTATATTCCAGATAGCTGA 57.239 33.333 10.19 0.00 45.17 4.26
2449 2654 6.662755 TCCACCAGTTATTGCATAGAGAATT 58.337 36.000 0.00 0.00 0.00 2.17
2474 2679 7.907389 TGGTTTGAGTATTGTTCTCTCTGTAT 58.093 34.615 0.00 0.00 33.59 2.29
2475 2680 8.375506 TGGTTTGAGTATTGTTCTCTCTGTATT 58.624 33.333 0.00 0.00 33.59 1.89
2508 2714 6.868339 TCTGTGCCAACATTCATATATACTCG 59.132 38.462 0.00 0.00 35.22 4.18
2640 2846 1.737793 GGTGGCGAGAACTTACATTGG 59.262 52.381 0.00 0.00 0.00 3.16
2703 2909 7.676947 TCTATTACTTGCTAACAACTGGTTCT 58.323 34.615 0.00 0.00 40.96 3.01
2822 3028 4.530553 GGGGACAAATGTTATCCACCTTTT 59.469 41.667 0.00 0.00 33.87 2.27
2839 3045 3.632145 CCTTTTAAGTGTGTGCTTCCAGT 59.368 43.478 0.00 0.00 0.00 4.00
2855 3061 9.516314 GTGCTTCCAGTTATTTCAATTTATACC 57.484 33.333 0.00 0.00 0.00 2.73
2876 3083 3.137544 CCTGGTAGTATATTGTTGGCCCA 59.862 47.826 0.00 0.00 0.00 5.36
2994 3226 4.210537 ACTTTTCATCTCACGGTAAACACG 59.789 41.667 0.00 0.00 37.36 4.49
3010 3242 8.863049 CGGTAAACACGATACTGTATTAGTTTT 58.137 33.333 20.63 16.97 40.89 2.43
3023 3255 9.047947 ACTGTATTAGTTTTCTAGATGGACCTT 57.952 33.333 0.00 0.00 35.67 3.50
3106 3346 4.295141 ACCGGTGAGATGGTCAAATTTA 57.705 40.909 6.12 0.00 36.74 1.40
3159 3399 7.697691 AGAAAATAGTTGTGCCATTAGATTCG 58.302 34.615 0.00 0.00 0.00 3.34
3213 3455 3.301794 TGGCCATGTTATGATTGAGCT 57.698 42.857 0.00 0.00 0.00 4.09
3243 3485 0.251297 CAACCTCACATGGGCTTCCA 60.251 55.000 0.00 0.00 45.91 3.53
3402 3644 3.302221 CGCATATTTTCTGTTCGTACCGG 60.302 47.826 0.00 0.00 0.00 5.28
3454 3696 6.384015 TGGTATTTACATGGATGACTCTCAGT 59.616 38.462 0.00 0.00 0.00 3.41
3544 3786 4.747605 AGTCTTCGAGAAGCTTGAGTTTTC 59.252 41.667 2.10 0.00 38.28 2.29
3546 3788 2.767505 TCGAGAAGCTTGAGTTTTCCC 58.232 47.619 2.10 0.00 0.00 3.97
3932 4191 6.653320 GGTTGGTGTAACAATATCAACTGAGA 59.347 38.462 0.00 0.00 41.18 3.27
4073 4334 6.049149 CACTCGGTTTATCATGAGGTTATGT 58.951 40.000 0.09 0.00 32.76 2.29
4074 4335 6.538742 CACTCGGTTTATCATGAGGTTATGTT 59.461 38.462 0.09 0.00 32.76 2.71
4075 4336 6.538742 ACTCGGTTTATCATGAGGTTATGTTG 59.461 38.462 0.09 0.00 32.76 3.33
4076 4337 5.295787 TCGGTTTATCATGAGGTTATGTTGC 59.704 40.000 0.09 0.00 0.00 4.17
4077 4338 5.065859 CGGTTTATCATGAGGTTATGTTGCA 59.934 40.000 0.09 0.00 0.00 4.08
4078 4339 6.238731 CGGTTTATCATGAGGTTATGTTGCAT 60.239 38.462 0.09 0.00 0.00 3.96
4079 4340 6.919662 GGTTTATCATGAGGTTATGTTGCATG 59.080 38.462 0.09 0.00 38.09 4.06
4080 4341 7.416664 GGTTTATCATGAGGTTATGTTGCATGT 60.417 37.037 0.09 0.00 37.98 3.21
4081 4342 5.762825 ATCATGAGGTTATGTTGCATGTC 57.237 39.130 0.09 0.00 37.98 3.06
4082 4343 4.587891 TCATGAGGTTATGTTGCATGTCA 58.412 39.130 0.00 0.00 37.98 3.58
4083 4344 5.008980 TCATGAGGTTATGTTGCATGTCAA 58.991 37.500 0.00 0.00 37.98 3.18
4084 4345 5.476254 TCATGAGGTTATGTTGCATGTCAAA 59.524 36.000 0.00 0.00 37.98 2.69
4085 4346 5.781210 TGAGGTTATGTTGCATGTCAAAA 57.219 34.783 4.47 0.58 36.26 2.44
4086 4347 5.527951 TGAGGTTATGTTGCATGTCAAAAC 58.472 37.500 4.47 5.99 36.26 2.43
4087 4348 5.068329 TGAGGTTATGTTGCATGTCAAAACA 59.932 36.000 13.17 10.69 40.38 2.83
4088 4349 5.288804 AGGTTATGTTGCATGTCAAAACAC 58.711 37.500 13.17 6.81 38.48 3.32
4089 4350 5.068987 AGGTTATGTTGCATGTCAAAACACT 59.931 36.000 13.17 8.25 38.48 3.55
4090 4351 5.175491 GGTTATGTTGCATGTCAAAACACTG 59.825 40.000 13.17 0.00 38.48 3.66
4091 4352 3.865011 TGTTGCATGTCAAAACACTGT 57.135 38.095 4.47 0.00 38.48 3.55
4092 4353 3.768406 TGTTGCATGTCAAAACACTGTC 58.232 40.909 4.47 0.00 38.48 3.51
4093 4354 3.443329 TGTTGCATGTCAAAACACTGTCT 59.557 39.130 4.47 0.00 38.48 3.41
4094 4355 3.969117 TGCATGTCAAAACACTGTCTC 57.031 42.857 0.00 0.00 38.48 3.36
4095 4356 3.277715 TGCATGTCAAAACACTGTCTCA 58.722 40.909 0.00 0.00 38.48 3.27
4096 4357 3.065233 TGCATGTCAAAACACTGTCTCAC 59.935 43.478 0.00 0.00 38.48 3.51
4097 4358 3.313526 GCATGTCAAAACACTGTCTCACT 59.686 43.478 0.00 0.00 38.48 3.41
4098 4359 4.787563 GCATGTCAAAACACTGTCTCACTG 60.788 45.833 0.00 0.00 38.48 3.66
4099 4360 4.200838 TGTCAAAACACTGTCTCACTGA 57.799 40.909 0.00 0.00 0.00 3.41
4100 4361 4.183865 TGTCAAAACACTGTCTCACTGAG 58.816 43.478 0.00 0.00 0.00 3.35
4101 4362 4.184629 GTCAAAACACTGTCTCACTGAGT 58.815 43.478 5.94 0.00 0.00 3.41
4102 4363 4.033358 GTCAAAACACTGTCTCACTGAGTG 59.967 45.833 6.18 6.18 42.39 3.51
4103 4364 4.081697 TCAAAACACTGTCTCACTGAGTGA 60.082 41.667 15.36 15.36 39.64 3.41
4104 4365 4.679373 AAACACTGTCTCACTGAGTGAT 57.321 40.909 16.59 0.00 41.94 3.06
4105 4366 3.932545 ACACTGTCTCACTGAGTGATC 57.067 47.619 16.59 12.52 41.94 2.92
4106 4367 3.225940 ACACTGTCTCACTGAGTGATCA 58.774 45.455 16.59 16.10 41.94 2.92
4107 4368 3.831333 ACACTGTCTCACTGAGTGATCAT 59.169 43.478 16.59 6.44 41.94 2.45
4108 4369 4.082300 ACACTGTCTCACTGAGTGATCATC 60.082 45.833 16.59 7.49 41.94 2.92
4109 4370 3.446873 ACTGTCTCACTGAGTGATCATCC 59.553 47.826 16.59 3.33 41.94 3.51
4110 4371 3.434309 TGTCTCACTGAGTGATCATCCA 58.566 45.455 16.59 5.82 41.94 3.41
4111 4372 3.834231 TGTCTCACTGAGTGATCATCCAA 59.166 43.478 16.59 0.00 41.94 3.53
4112 4373 4.081807 TGTCTCACTGAGTGATCATCCAAG 60.082 45.833 16.59 1.77 41.94 3.61
4113 4374 4.081752 GTCTCACTGAGTGATCATCCAAGT 60.082 45.833 16.59 0.00 41.94 3.16
4114 4375 4.159321 TCTCACTGAGTGATCATCCAAGTC 59.841 45.833 16.59 0.00 41.94 3.01
4115 4376 3.834231 TCACTGAGTGATCATCCAAGTCA 59.166 43.478 11.93 0.00 37.67 3.41
4116 4377 4.468868 TCACTGAGTGATCATCCAAGTCAT 59.531 41.667 11.93 0.00 37.67 3.06
4117 4378 4.571176 CACTGAGTGATCATCCAAGTCATG 59.429 45.833 6.79 0.00 35.23 3.07
4118 4379 6.425776 CACTGAGTGATCATCCAAGTCATGG 61.426 48.000 6.79 0.00 42.68 3.66
4134 4395 7.605449 CAAGTCATGGAACCTGAATTTATTGT 58.395 34.615 0.00 0.00 29.22 2.71
4135 4396 7.161773 AGTCATGGAACCTGAATTTATTGTG 57.838 36.000 0.00 0.00 0.00 3.33
4136 4397 6.947733 AGTCATGGAACCTGAATTTATTGTGA 59.052 34.615 0.00 0.00 0.00 3.58
4137 4398 7.121759 AGTCATGGAACCTGAATTTATTGTGAG 59.878 37.037 0.00 0.00 0.00 3.51
4138 4399 6.377996 TCATGGAACCTGAATTTATTGTGAGG 59.622 38.462 0.00 0.00 0.00 3.86
4139 4400 5.886609 TGGAACCTGAATTTATTGTGAGGA 58.113 37.500 0.00 0.00 0.00 3.71
4140 4401 5.710099 TGGAACCTGAATTTATTGTGAGGAC 59.290 40.000 0.00 0.00 0.00 3.85
4141 4402 5.710099 GGAACCTGAATTTATTGTGAGGACA 59.290 40.000 0.00 0.00 0.00 4.02
4142 4403 6.127897 GGAACCTGAATTTATTGTGAGGACAG 60.128 42.308 0.00 0.00 32.26 3.51
4143 4404 5.880901 ACCTGAATTTATTGTGAGGACAGT 58.119 37.500 0.00 0.00 32.26 3.55
4144 4405 7.016153 ACCTGAATTTATTGTGAGGACAGTA 57.984 36.000 0.00 0.00 32.26 2.74
4145 4406 7.106239 ACCTGAATTTATTGTGAGGACAGTAG 58.894 38.462 0.00 0.00 32.26 2.57
4146 4407 7.038302 ACCTGAATTTATTGTGAGGACAGTAGA 60.038 37.037 0.00 0.00 32.26 2.59
4147 4408 7.989741 CCTGAATTTATTGTGAGGACAGTAGAT 59.010 37.037 0.00 0.00 32.26 1.98
4159 4420 8.983724 GTGAGGACAGTAGATAAATTAGAATGC 58.016 37.037 0.00 0.00 0.00 3.56
4160 4421 8.150945 TGAGGACAGTAGATAAATTAGAATGCC 58.849 37.037 0.00 0.00 0.00 4.40
4161 4422 7.454225 AGGACAGTAGATAAATTAGAATGCCC 58.546 38.462 0.00 0.00 0.00 5.36
4162 4423 7.072454 AGGACAGTAGATAAATTAGAATGCCCA 59.928 37.037 0.00 0.00 0.00 5.36
4163 4424 7.389053 GGACAGTAGATAAATTAGAATGCCCAG 59.611 40.741 0.00 0.00 0.00 4.45
4164 4425 8.034313 ACAGTAGATAAATTAGAATGCCCAGA 57.966 34.615 0.00 0.00 0.00 3.86
4165 4426 8.664079 ACAGTAGATAAATTAGAATGCCCAGAT 58.336 33.333 0.00 0.00 0.00 2.90
4166 4427 9.512588 CAGTAGATAAATTAGAATGCCCAGATT 57.487 33.333 0.00 0.00 0.00 2.40
4167 4428 9.512588 AGTAGATAAATTAGAATGCCCAGATTG 57.487 33.333 0.00 0.00 0.00 2.67
4168 4429 9.507329 GTAGATAAATTAGAATGCCCAGATTGA 57.493 33.333 0.00 0.00 0.00 2.57
4169 4430 8.401490 AGATAAATTAGAATGCCCAGATTGAC 57.599 34.615 0.00 0.00 0.00 3.18
4170 4431 5.859205 AAATTAGAATGCCCAGATTGACC 57.141 39.130 0.00 0.00 0.00 4.02
4171 4432 3.297134 TTAGAATGCCCAGATTGACCC 57.703 47.619 0.00 0.00 0.00 4.46
4172 4433 0.259938 AGAATGCCCAGATTGACCCC 59.740 55.000 0.00 0.00 0.00 4.95
4173 4434 1.076777 AATGCCCAGATTGACCCCG 60.077 57.895 0.00 0.00 0.00 5.73
4174 4435 1.863155 AATGCCCAGATTGACCCCGT 61.863 55.000 0.00 0.00 0.00 5.28
4175 4436 0.986019 ATGCCCAGATTGACCCCGTA 60.986 55.000 0.00 0.00 0.00 4.02
4176 4437 1.202099 TGCCCAGATTGACCCCGTAA 61.202 55.000 0.00 0.00 0.00 3.18
4177 4438 0.182775 GCCCAGATTGACCCCGTAAT 59.817 55.000 0.00 0.00 0.00 1.89
4178 4439 1.967319 CCCAGATTGACCCCGTAATG 58.033 55.000 0.00 0.00 0.00 1.90
4179 4440 1.488812 CCCAGATTGACCCCGTAATGA 59.511 52.381 0.00 0.00 0.00 2.57
4180 4441 2.561569 CCAGATTGACCCCGTAATGAC 58.438 52.381 0.00 0.00 0.00 3.06
4181 4442 2.093181 CCAGATTGACCCCGTAATGACA 60.093 50.000 0.00 0.00 0.00 3.58
4182 4443 3.605634 CAGATTGACCCCGTAATGACAA 58.394 45.455 0.00 0.00 0.00 3.18
4183 4444 4.006989 CAGATTGACCCCGTAATGACAAA 58.993 43.478 0.00 0.00 0.00 2.83
4184 4445 4.640201 CAGATTGACCCCGTAATGACAAAT 59.360 41.667 0.00 0.00 0.00 2.32
4185 4446 5.125417 CAGATTGACCCCGTAATGACAAATT 59.875 40.000 0.00 0.00 0.00 1.82
4186 4447 5.357032 AGATTGACCCCGTAATGACAAATTC 59.643 40.000 0.00 0.00 0.00 2.17
4187 4448 4.022413 TGACCCCGTAATGACAAATTCA 57.978 40.909 0.00 0.00 39.11 2.57
4188 4449 4.006989 TGACCCCGTAATGACAAATTCAG 58.993 43.478 0.00 0.00 37.77 3.02
4189 4450 2.752903 ACCCCGTAATGACAAATTCAGC 59.247 45.455 0.00 0.00 37.77 4.26
4190 4451 3.016736 CCCCGTAATGACAAATTCAGCT 58.983 45.455 0.00 0.00 37.77 4.24
4191 4452 3.065371 CCCCGTAATGACAAATTCAGCTC 59.935 47.826 0.00 0.00 37.77 4.09
4192 4453 3.689161 CCCGTAATGACAAATTCAGCTCA 59.311 43.478 0.00 0.00 37.77 4.26
4193 4454 4.437390 CCCGTAATGACAAATTCAGCTCAC 60.437 45.833 0.00 0.00 37.77 3.51
4194 4455 4.393062 CCGTAATGACAAATTCAGCTCACT 59.607 41.667 0.00 0.00 37.77 3.41
4195 4456 5.446473 CCGTAATGACAAATTCAGCTCACTC 60.446 44.000 0.00 0.00 37.77 3.51
4196 4457 4.675190 AATGACAAATTCAGCTCACTCG 57.325 40.909 0.00 0.00 37.77 4.18
4197 4458 2.416747 TGACAAATTCAGCTCACTCGG 58.583 47.619 0.00 0.00 0.00 4.63
4198 4459 2.224281 TGACAAATTCAGCTCACTCGGT 60.224 45.455 0.00 0.00 0.00 4.69
4199 4460 2.808543 GACAAATTCAGCTCACTCGGTT 59.191 45.455 0.00 0.00 0.00 4.44
4200 4461 3.214328 ACAAATTCAGCTCACTCGGTTT 58.786 40.909 0.00 0.00 0.00 3.27
4201 4462 4.385825 ACAAATTCAGCTCACTCGGTTTA 58.614 39.130 0.00 0.00 0.00 2.01
4202 4463 5.003804 ACAAATTCAGCTCACTCGGTTTAT 58.996 37.500 0.00 0.00 0.00 1.40
4203 4464 5.122396 ACAAATTCAGCTCACTCGGTTTATC 59.878 40.000 0.00 0.00 0.00 1.75
4204 4465 3.953712 TTCAGCTCACTCGGTTTATCA 57.046 42.857 0.00 0.00 0.00 2.15
4205 4466 4.471904 TTCAGCTCACTCGGTTTATCAT 57.528 40.909 0.00 0.00 0.00 2.45
4206 4467 3.785486 TCAGCTCACTCGGTTTATCATG 58.215 45.455 0.00 0.00 0.00 3.07
4207 4468 3.447229 TCAGCTCACTCGGTTTATCATGA 59.553 43.478 0.00 0.00 0.00 3.07
4208 4469 3.801050 CAGCTCACTCGGTTTATCATGAG 59.199 47.826 0.09 0.00 37.28 2.90
4209 4470 3.126831 GCTCACTCGGTTTATCATGAGG 58.873 50.000 0.09 0.00 35.25 3.86
4210 4471 3.430929 GCTCACTCGGTTTATCATGAGGT 60.431 47.826 0.09 0.00 35.25 3.85
4211 4472 4.759782 CTCACTCGGTTTATCATGAGGTT 58.240 43.478 0.09 0.00 31.85 3.50
4212 4473 5.681437 GCTCACTCGGTTTATCATGAGGTTA 60.681 44.000 0.09 0.00 35.25 2.85
4213 4474 6.479972 TCACTCGGTTTATCATGAGGTTAT 57.520 37.500 0.09 0.00 32.76 1.89
4214 4475 6.280643 TCACTCGGTTTATCATGAGGTTATG 58.719 40.000 0.09 0.00 32.76 1.90
4215 4476 6.049149 CACTCGGTTTATCATGAGGTTATGT 58.951 40.000 0.09 0.00 32.76 2.29
4240 4501 4.591202 CATGTCAAAACACTGTCTCACAC 58.409 43.478 0.00 0.00 38.48 3.82
4260 4522 6.437477 TCACACTGATACATTCCTAGACACTT 59.563 38.462 0.00 0.00 0.00 3.16
4279 4541 4.266029 CACTTTTGTTAAGTTGCTGTGCAG 59.734 41.667 0.00 0.00 40.61 4.41
4379 4641 3.309296 TGATCGGCCTTATCCTTCTCTT 58.691 45.455 0.00 0.00 0.00 2.85
4474 4736 4.271049 CAGACTACATACGGAGCAAAATGG 59.729 45.833 0.00 0.00 0.00 3.16
4484 4746 3.885297 CGGAGCAAAATGGGTGAATCTAT 59.115 43.478 0.00 0.00 0.00 1.98
4540 4802 9.886132 TGTAGTCCCTATTGAAATCTCTAAAAC 57.114 33.333 0.00 0.00 0.00 2.43
4542 4804 6.539103 AGTCCCTATTGAAATCTCTAAAACGC 59.461 38.462 0.00 0.00 0.00 4.84
4544 4806 5.823045 CCCTATTGAAATCTCTAAAACGCCT 59.177 40.000 0.00 0.00 0.00 5.52
4571 4833 8.953223 ATATTTAGAAACGGAGGGAGTACTAT 57.047 34.615 0.00 0.00 0.00 2.12
4639 4901 5.583061 CCGGATGTATATAGGCGCATTTTAA 59.417 40.000 10.83 0.00 0.00 1.52
4664 4926 4.963953 GTGTTTGTTCACTCATTTCAGTCG 59.036 41.667 0.00 0.00 35.68 4.18
4665 4927 4.035091 TGTTTGTTCACTCATTTCAGTCGG 59.965 41.667 0.00 0.00 0.00 4.79
4746 5011 4.199310 TGTTAGGTGCCTGATTATGCTTC 58.801 43.478 0.12 0.00 0.00 3.86
4747 5012 4.080356 TGTTAGGTGCCTGATTATGCTTCT 60.080 41.667 0.12 0.00 0.00 2.85
4748 5013 3.659183 AGGTGCCTGATTATGCTTCTT 57.341 42.857 0.00 0.00 0.00 2.52
4749 5014 3.973425 AGGTGCCTGATTATGCTTCTTT 58.027 40.909 0.00 0.00 0.00 2.52
4761 5026 9.612066 TGATTATGCTTCTTTTGTTTCCTTTTT 57.388 25.926 0.00 0.00 0.00 1.94
4856 5121 2.307686 CAGAGGCCCAGGTACCTTTTTA 59.692 50.000 13.15 0.00 36.05 1.52
4928 5193 7.118723 AGAAACAAATCATAGAGCCATTGGTA 58.881 34.615 4.26 0.00 0.00 3.25
4932 5197 5.589367 AATCATAGAGCCATTGGTACCAT 57.411 39.130 17.17 0.00 0.00 3.55
5026 5292 7.819900 AGTGTTTTGGACTATCTTCACACTATC 59.180 37.037 0.00 0.00 41.35 2.08
5219 5485 5.799827 AAGCTATCCTTCATCTACAGGTC 57.200 43.478 0.00 0.00 0.00 3.85
5314 5698 7.293745 CACTGAGTTGCTTTCTTACAATGTAG 58.706 38.462 0.00 0.00 0.00 2.74
5404 5788 8.472413 CCTGTTGTGAATGAAGATGGAAATATT 58.528 33.333 0.00 0.00 0.00 1.28
5550 5936 5.048573 GGAAAACCAACTTACGCTCCATTAA 60.049 40.000 0.00 0.00 0.00 1.40
5551 5937 6.349860 GGAAAACCAACTTACGCTCCATTAAT 60.350 38.462 0.00 0.00 0.00 1.40
5552 5938 7.148205 GGAAAACCAACTTACGCTCCATTAATA 60.148 37.037 0.00 0.00 0.00 0.98
5621 6007 3.482156 ACTGTGCTTTCTGTCAGATGT 57.518 42.857 2.68 0.00 0.00 3.06
5649 6035 6.118170 TCCCAATGCATTTTTCTTGACAAAA 58.882 32.000 9.83 0.00 0.00 2.44
5726 6227 7.293073 AGAATTGCATATATTTCAGACCACCT 58.707 34.615 0.00 0.00 0.00 4.00
5727 6228 6.889301 ATTGCATATATTTCAGACCACCTG 57.111 37.500 0.00 0.00 44.27 4.00
5730 6231 6.186957 TGCATATATTTCAGACCACCTGTTT 58.813 36.000 0.00 0.00 43.38 2.83
5733 6234 8.682710 GCATATATTTCAGACCACCTGTTTAAA 58.317 33.333 0.00 0.00 43.38 1.52
5848 6349 1.338136 ACCCGGCAGAATCCTACTGG 61.338 60.000 0.00 0.00 36.09 4.00
6085 6591 7.114754 TCATTCAGATTTCTAGCAGACCATTT 58.885 34.615 0.00 0.00 0.00 2.32
6119 6629 7.888250 TCATATCATTCATATCCTCTAGCGT 57.112 36.000 0.00 0.00 0.00 5.07
6147 6657 9.468532 GATCCAATCAGATTTTATAAAGCCAAC 57.531 33.333 0.00 0.00 0.00 3.77
6165 6675 0.677731 ACGCCTGACATCCATTGTGG 60.678 55.000 0.00 0.00 39.18 4.17
6186 6696 3.307762 GGGGGATCATCTTTTATCGGGAG 60.308 52.174 0.00 0.00 0.00 4.30
6187 6697 3.583086 GGGGATCATCTTTTATCGGGAGA 59.417 47.826 0.00 0.00 46.90 3.71
6188 6698 4.563786 GGGGATCATCTTTTATCGGGAGAC 60.564 50.000 0.00 0.00 44.82 3.36
6189 6699 4.040461 GGGATCATCTTTTATCGGGAGACA 59.960 45.833 0.00 0.00 44.82 3.41
6190 6700 5.280215 GGGATCATCTTTTATCGGGAGACAT 60.280 44.000 0.00 0.00 44.82 3.06
6272 6782 1.139498 TCCATGCCTTCCCCAAGACA 61.139 55.000 0.00 0.00 0.00 3.41
6331 6842 5.049129 GGAAGACCAGTTGATGAAGTTGAAG 60.049 44.000 0.00 0.00 35.97 3.02
6332 6843 5.296151 AGACCAGTTGATGAAGTTGAAGA 57.704 39.130 0.00 0.00 0.00 2.87
6407 6918 7.924103 AAACAAAAGATAAGTTTTAGTGCGG 57.076 32.000 0.00 0.00 31.95 5.69
6419 6941 6.694447 AGTTTTAGTGCGGACAGATAAGTTA 58.306 36.000 10.52 0.00 0.00 2.24
6463 6989 9.927081 ATTTTGTAGGGTAGAAGAATGAATGAT 57.073 29.630 0.00 0.00 0.00 2.45
6493 7019 3.348236 CCAGTTGAGCAGTGGCAC 58.652 61.111 10.29 10.29 44.61 5.01
6494 7020 1.228063 CCAGTTGAGCAGTGGCACT 60.228 57.895 15.88 15.88 44.61 4.40
6497 7023 0.471617 AGTTGAGCAGTGGCACTCTT 59.528 50.000 19.13 8.78 44.61 2.85
6498 7024 1.133976 AGTTGAGCAGTGGCACTCTTT 60.134 47.619 19.13 5.94 44.61 2.52
6520 7046 4.854361 TTTTGTTTTCTGTACGTACGCA 57.146 36.364 20.18 5.21 0.00 5.24
6521 7047 3.839823 TTGTTTTCTGTACGTACGCAC 57.160 42.857 20.18 14.06 0.00 5.34
6530 7056 2.468532 CGTACGCACGCCTGTTTC 59.531 61.111 0.52 0.00 42.05 2.78
6531 7057 2.858158 GTACGCACGCCTGTTTCC 59.142 61.111 0.00 0.00 0.00 3.13
6532 7058 2.735478 TACGCACGCCTGTTTCCG 60.735 61.111 0.00 0.00 0.00 4.30
6535 7061 3.723348 GCACGCCTGTTTCCGGTC 61.723 66.667 0.00 0.00 0.00 4.79
6536 7062 3.411351 CACGCCTGTTTCCGGTCG 61.411 66.667 0.00 0.00 0.00 4.79
6539 7065 2.746277 GCCTGTTTCCGGTCGCAT 60.746 61.111 0.00 0.00 0.00 4.73
6540 7066 2.750888 GCCTGTTTCCGGTCGCATC 61.751 63.158 0.00 0.00 0.00 3.91
6541 7067 1.079127 CCTGTTTCCGGTCGCATCT 60.079 57.895 0.00 0.00 0.00 2.90
6542 7068 0.673644 CCTGTTTCCGGTCGCATCTT 60.674 55.000 0.00 0.00 0.00 2.40
6543 7069 1.156736 CTGTTTCCGGTCGCATCTTT 58.843 50.000 0.00 0.00 0.00 2.52
6544 7070 1.535462 CTGTTTCCGGTCGCATCTTTT 59.465 47.619 0.00 0.00 0.00 2.27
6545 7071 1.265635 TGTTTCCGGTCGCATCTTTTG 59.734 47.619 0.00 0.00 0.00 2.44
6564 7090 1.211212 TGCTGATCTGCTTGCCTGTAT 59.789 47.619 23.02 0.00 0.00 2.29
6586 7112 3.657239 TCCCATATGTATTCCTGCCACAT 59.343 43.478 1.24 0.00 36.82 3.21
6587 7113 3.760151 CCCATATGTATTCCTGCCACATG 59.240 47.826 1.24 0.00 34.78 3.21
6594 7120 0.890542 TTCCTGCCACATGTCTGCAC 60.891 55.000 14.05 0.00 0.00 4.57
6625 7151 8.649841 CATTTCGACCAGTAAATTTACGTAAGA 58.350 33.333 19.92 14.48 43.62 2.10
6713 7271 5.605534 GACTGTACATGCTGATATTGACCT 58.394 41.667 0.00 0.00 0.00 3.85
6758 7316 2.505982 GCTGATAGCTTCCCGGCA 59.494 61.111 0.00 0.00 38.45 5.69
7005 7568 2.711922 GCCGATCCGTCACTGTCCT 61.712 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.575630 ACTATAGTTATGCATGACCGCG 58.424 45.455 17.27 0.00 33.35 6.46
15 16 4.623167 GCTGACTATAGTTATGCATGACCG 59.377 45.833 17.27 7.04 0.00 4.79
17 18 6.686630 AGAGCTGACTATAGTTATGCATGAC 58.313 40.000 13.46 13.46 0.00 3.06
35 36 6.317140 TGCTTCTGGTTTATGAAATAGAGCTG 59.683 38.462 0.00 0.00 33.11 4.24
63 64 1.611491 GAAATTGTGAAGGGCGGTTGA 59.389 47.619 0.00 0.00 0.00 3.18
69 70 2.229784 CAGTCCAGAAATTGTGAAGGGC 59.770 50.000 0.00 0.00 0.00 5.19
82 83 4.764050 TTGTTGGTTTAGACAGTCCAGA 57.236 40.909 0.00 0.00 0.00 3.86
86 87 6.260050 TGACATCTTTGTTGGTTTAGACAGTC 59.740 38.462 0.00 0.00 35.79 3.51
109 110 9.249053 ACTGATCTCTAGAAGTATTTGAGTTGA 57.751 33.333 0.00 0.00 0.00 3.18
135 136 0.107897 CCTACAAGTGCGTATGGGCA 60.108 55.000 0.00 0.00 41.45 5.36
144 145 1.068954 GCTTCTGCAACCTACAAGTGC 60.069 52.381 0.00 0.00 39.41 4.40
163 166 2.357637 TGTTGTGGTGAAGCTTTAGTGC 59.642 45.455 0.00 0.00 0.00 4.40
172 175 1.064505 CTGTGCACTGTTGTGGTGAAG 59.935 52.381 19.41 0.00 43.97 3.02
206 209 9.388506 TGTGGAATGTTGTTTAATTTGATTGTT 57.611 25.926 0.00 0.00 0.00 2.83
223 226 6.998074 TGACTACTGAAGAAATTGTGGAATGT 59.002 34.615 0.00 0.00 0.00 2.71
358 370 1.787155 GACGTCTATGCGCTGGTATTG 59.213 52.381 9.73 0.00 34.88 1.90
388 400 6.005583 TCGGACGCGAGATTTAGTTTATAT 57.994 37.500 15.93 0.00 0.00 0.86
409 421 9.588774 TTCTTTGTTCTGAATAAACGTTAATCG 57.411 29.630 0.00 0.00 46.00 3.34
430 442 6.581712 GCCTGTCAGATTCTAGATCTTCTTT 58.418 40.000 0.00 0.00 0.00 2.52
490 502 5.628797 ATTTTGTTTTGGTCTGGTGGATT 57.371 34.783 0.00 0.00 0.00 3.01
492 504 5.452636 GCTAATTTTGTTTTGGTCTGGTGGA 60.453 40.000 0.00 0.00 0.00 4.02
498 510 8.729805 TTTTGATGCTAATTTTGTTTTGGTCT 57.270 26.923 0.00 0.00 0.00 3.85
501 513 8.022550 GGGATTTTGATGCTAATTTTGTTTTGG 58.977 33.333 0.00 0.00 0.00 3.28
507 519 6.589523 TCGTTGGGATTTTGATGCTAATTTTG 59.410 34.615 0.00 0.00 0.00 2.44
508 520 6.696411 TCGTTGGGATTTTGATGCTAATTTT 58.304 32.000 0.00 0.00 0.00 1.82
529 541 3.181490 GCTTGGGTTTTTCTCTGTTTCGT 60.181 43.478 0.00 0.00 0.00 3.85
539 551 3.430333 TCTGTTTCGCTTGGGTTTTTC 57.570 42.857 0.00 0.00 0.00 2.29
541 553 2.031157 CGATCTGTTTCGCTTGGGTTTT 60.031 45.455 0.00 0.00 31.60 2.43
545 557 1.438651 TTCGATCTGTTTCGCTTGGG 58.561 50.000 0.00 0.00 38.97 4.12
557 569 5.220739 CGCCTTTTCATCTTGAATTCGATCT 60.221 40.000 0.04 0.00 36.11 2.75
568 580 1.282157 AGCCCTACGCCTTTTCATCTT 59.718 47.619 0.00 0.00 38.78 2.40
570 582 1.751437 AAGCCCTACGCCTTTTCATC 58.249 50.000 0.00 0.00 38.78 2.92
582 594 3.637229 CGGATCTGAAGAAGTAAGCCCTA 59.363 47.826 0.00 0.00 0.00 3.53
638 650 1.375326 GCTTTCCCCCTCGTTCAGT 59.625 57.895 0.00 0.00 0.00 3.41
642 654 3.078817 GAGGCTTTCCCCCTCGTT 58.921 61.111 0.00 0.00 39.50 3.85
670 682 0.038310 AAGGTCTAGGGTTTGGCTGC 59.962 55.000 0.00 0.00 0.00 5.25
672 684 0.613777 CGAAGGTCTAGGGTTTGGCT 59.386 55.000 0.00 0.00 0.00 4.75
804 820 3.530260 GGGCCCGCATGTCATTGG 61.530 66.667 5.69 0.00 0.00 3.16
823 839 3.632080 TGATTCGTGTGGGGCCGT 61.632 61.111 0.00 0.00 0.00 5.68
827 843 1.234615 GGTGTGTGATTCGTGTGGGG 61.235 60.000 0.00 0.00 0.00 4.96
834 850 4.248859 AGATTCTCTTGGTGTGTGATTCG 58.751 43.478 0.00 0.00 0.00 3.34
876 892 1.936547 CCTGCTCTCAGCGTTATTTCC 59.063 52.381 0.00 0.00 46.26 3.13
1236 1265 3.133721 CCAAAACACCTCAAATCACCCAA 59.866 43.478 0.00 0.00 0.00 4.12
1237 1266 2.697751 CCAAAACACCTCAAATCACCCA 59.302 45.455 0.00 0.00 0.00 4.51
1238 1267 2.698274 ACCAAAACACCTCAAATCACCC 59.302 45.455 0.00 0.00 0.00 4.61
1444 1474 8.871125 CCACTAGGTAACCAAATACTGATAGAT 58.129 37.037 0.00 0.00 37.17 1.98
1492 1531 7.935755 ACCACTTCTGATCATGGTAAATCTATG 59.064 37.037 15.58 0.00 43.72 2.23
1511 1550 4.272504 TCTGAAAACATTCGTCACCACTTC 59.727 41.667 0.00 0.00 0.00 3.01
1585 1624 4.278170 ACAAAATTGCGAACCTCTGAATCA 59.722 37.500 0.00 0.00 0.00 2.57
1628 1667 2.560542 CTGGATCCCTAGTTCATCCTCG 59.439 54.545 9.90 2.41 37.56 4.63
1662 1701 8.322091 AGATATTCCCCGAATATACTTTTCCTG 58.678 37.037 6.83 0.00 42.89 3.86
1755 1799 7.125356 ACCTGAACTTCGTTCCCTTTATATAGT 59.875 37.037 4.48 0.00 41.35 2.12
1793 1837 4.710324 AGTTAACGTTCATCTTTCACCCA 58.290 39.130 2.82 0.00 0.00 4.51
1858 1902 1.064825 GAAACTCCCTTCCCAGACCA 58.935 55.000 0.00 0.00 0.00 4.02
1885 1930 6.833416 TGCAGAATTATTATGCAAGGGTAAGT 59.167 34.615 22.50 0.00 46.31 2.24
2056 2252 6.053632 TCAGCAGATTCAGATAAGGAACAA 57.946 37.500 0.00 0.00 0.00 2.83
2126 2322 2.100631 GCTCACTACCGCGCAATGT 61.101 57.895 8.75 3.52 0.00 2.71
2127 2323 1.431488 ATGCTCACTACCGCGCAATG 61.431 55.000 8.75 0.00 35.83 2.82
2128 2324 1.153369 ATGCTCACTACCGCGCAAT 60.153 52.632 8.75 0.00 35.83 3.56
2129 2325 2.100031 CATGCTCACTACCGCGCAA 61.100 57.895 8.75 0.00 35.83 4.85
2145 2341 5.774690 TCTTGGCCTTTATTCTTGTTGACAT 59.225 36.000 3.32 0.00 0.00 3.06
2146 2342 5.136828 TCTTGGCCTTTATTCTTGTTGACA 58.863 37.500 3.32 0.00 0.00 3.58
2449 2654 6.174720 ACAGAGAGAACAATACTCAAACCA 57.825 37.500 0.00 0.00 36.91 3.67
2508 2714 5.045872 ACGTCTTATATTTTGGTACGGAGC 58.954 41.667 0.00 0.00 33.44 4.70
2640 2846 6.399986 GCAATTTTATCTGCGGAAGTTCAAAC 60.400 38.462 0.00 0.00 0.00 2.93
2703 2909 2.594303 CCGAGTGTTTGCTGGCCA 60.594 61.111 4.71 4.71 0.00 5.36
2822 3028 6.058833 TGAAATAACTGGAAGCACACACTTA 58.941 36.000 0.00 0.00 37.60 2.24
2855 3061 4.431416 TGGGCCAACAATATACTACCAG 57.569 45.455 2.13 0.00 0.00 4.00
2949 3181 6.430451 AGTAACCCTATATTTTACGTCGACG 58.570 40.000 34.58 34.58 46.33 5.12
3010 3242 6.560003 TGCTAATCAAAAGGTCCATCTAGA 57.440 37.500 0.00 0.00 0.00 2.43
3123 3363 7.867403 GGCACAACTATTTTCTTCATCTCAAAA 59.133 33.333 0.00 0.00 0.00 2.44
3147 3387 4.558538 ATTGCTTCACGAATCTAATGGC 57.441 40.909 0.00 0.00 0.00 4.40
3178 3418 5.326900 ACATGGCCATCATCAGCATAATAA 58.673 37.500 17.61 0.00 32.92 1.40
3243 3485 3.760035 CGCCTAGCAGGTGTCGGT 61.760 66.667 7.38 0.00 40.92 4.69
3544 3786 0.179089 CTCAACCTCGAGAGCATGGG 60.179 60.000 15.71 3.09 34.79 4.00
3546 3788 2.538437 CTTCTCAACCTCGAGAGCATG 58.462 52.381 15.71 7.16 42.81 4.06
3679 3921 7.604164 TGAGAACTACATTCCTCATTTCTCAAC 59.396 37.037 8.33 0.00 42.65 3.18
3902 4161 6.334102 TGATATTGTTACACCAACCCAAAC 57.666 37.500 0.00 0.00 36.20 2.93
3932 4191 6.120507 AGCAGGACATAAGAAAGAGAACTT 57.879 37.500 0.00 0.00 38.05 2.66
3946 4205 3.713248 TGGATGATCACTAAGCAGGACAT 59.287 43.478 0.00 0.00 0.00 3.06
4073 4334 3.693578 TGAGACAGTGTTTTGACATGCAA 59.306 39.130 0.00 0.00 33.88 4.08
4074 4335 3.065233 GTGAGACAGTGTTTTGACATGCA 59.935 43.478 0.00 0.00 0.00 3.96
4075 4336 3.313526 AGTGAGACAGTGTTTTGACATGC 59.686 43.478 0.00 0.00 0.00 4.06
4076 4337 4.571984 TCAGTGAGACAGTGTTTTGACATG 59.428 41.667 0.00 0.00 36.33 3.21
4077 4338 4.769688 TCAGTGAGACAGTGTTTTGACAT 58.230 39.130 0.00 0.00 36.33 3.06
4078 4339 4.183865 CTCAGTGAGACAGTGTTTTGACA 58.816 43.478 15.46 0.00 36.33 3.58
4079 4340 4.033358 CACTCAGTGAGACAGTGTTTTGAC 59.967 45.833 26.86 0.00 36.33 3.18
4080 4341 4.081697 TCACTCAGTGAGACAGTGTTTTGA 60.082 41.667 26.86 12.91 37.67 2.69
4081 4342 4.183865 TCACTCAGTGAGACAGTGTTTTG 58.816 43.478 26.86 10.79 37.67 2.44
4082 4343 4.471904 TCACTCAGTGAGACAGTGTTTT 57.528 40.909 26.86 0.00 37.67 2.43
4083 4344 4.100035 TGATCACTCAGTGAGACAGTGTTT 59.900 41.667 26.86 7.48 46.04 2.83
4084 4345 3.638627 TGATCACTCAGTGAGACAGTGTT 59.361 43.478 26.86 9.97 46.04 3.32
4085 4346 3.225940 TGATCACTCAGTGAGACAGTGT 58.774 45.455 26.86 0.00 46.04 3.55
4086 4347 3.930634 TGATCACTCAGTGAGACAGTG 57.069 47.619 26.86 14.76 46.04 3.66
4087 4348 3.446873 GGATGATCACTCAGTGAGACAGT 59.553 47.826 26.86 9.19 46.04 3.55
4088 4349 3.446516 TGGATGATCACTCAGTGAGACAG 59.553 47.826 26.86 14.97 46.04 3.51
4089 4350 3.434309 TGGATGATCACTCAGTGAGACA 58.566 45.455 26.86 15.52 46.04 3.41
4090 4351 4.081752 ACTTGGATGATCACTCAGTGAGAC 60.082 45.833 26.86 10.37 46.04 3.36
4091 4352 4.092279 ACTTGGATGATCACTCAGTGAGA 58.908 43.478 26.86 5.80 46.04 3.27
4092 4353 4.081807 TGACTTGGATGATCACTCAGTGAG 60.082 45.833 18.83 18.83 46.04 3.51
4093 4354 3.834231 TGACTTGGATGATCACTCAGTGA 59.166 43.478 10.71 10.71 46.90 3.41
4094 4355 4.198028 TGACTTGGATGATCACTCAGTG 57.802 45.455 0.00 0.00 34.12 3.66
4095 4356 4.767478 CATGACTTGGATGATCACTCAGT 58.233 43.478 0.00 0.00 34.12 3.41
4109 4370 7.543172 CACAATAAATTCAGGTTCCATGACTTG 59.457 37.037 0.00 0.00 0.00 3.16
4110 4371 7.451255 TCACAATAAATTCAGGTTCCATGACTT 59.549 33.333 0.00 0.00 0.00 3.01
4111 4372 6.947733 TCACAATAAATTCAGGTTCCATGACT 59.052 34.615 0.00 0.00 0.00 3.41
4112 4373 7.156876 TCACAATAAATTCAGGTTCCATGAC 57.843 36.000 0.00 0.00 0.00 3.06
4113 4374 6.377996 CCTCACAATAAATTCAGGTTCCATGA 59.622 38.462 0.00 0.00 0.00 3.07
4114 4375 6.377996 TCCTCACAATAAATTCAGGTTCCATG 59.622 38.462 0.00 0.00 0.00 3.66
4115 4376 6.378280 GTCCTCACAATAAATTCAGGTTCCAT 59.622 38.462 0.00 0.00 0.00 3.41
4116 4377 5.710099 GTCCTCACAATAAATTCAGGTTCCA 59.290 40.000 0.00 0.00 0.00 3.53
4117 4378 5.710099 TGTCCTCACAATAAATTCAGGTTCC 59.290 40.000 0.00 0.00 0.00 3.62
4118 4379 6.431234 ACTGTCCTCACAATAAATTCAGGTTC 59.569 38.462 0.00 0.00 29.82 3.62
4119 4380 6.306987 ACTGTCCTCACAATAAATTCAGGTT 58.693 36.000 0.00 0.00 29.82 3.50
4120 4381 5.880901 ACTGTCCTCACAATAAATTCAGGT 58.119 37.500 0.00 0.00 29.82 4.00
4121 4382 7.331026 TCTACTGTCCTCACAATAAATTCAGG 58.669 38.462 0.00 0.00 29.82 3.86
4122 4383 8.954950 ATCTACTGTCCTCACAATAAATTCAG 57.045 34.615 0.00 0.00 29.82 3.02
4133 4394 8.983724 GCATTCTAATTTATCTACTGTCCTCAC 58.016 37.037 0.00 0.00 0.00 3.51
4134 4395 8.150945 GGCATTCTAATTTATCTACTGTCCTCA 58.849 37.037 0.00 0.00 0.00 3.86
4135 4396 7.604545 GGGCATTCTAATTTATCTACTGTCCTC 59.395 40.741 0.00 0.00 0.00 3.71
4136 4397 7.072454 TGGGCATTCTAATTTATCTACTGTCCT 59.928 37.037 0.00 0.00 0.00 3.85
4137 4398 7.224297 TGGGCATTCTAATTTATCTACTGTCC 58.776 38.462 0.00 0.00 0.00 4.02
4138 4399 8.150945 TCTGGGCATTCTAATTTATCTACTGTC 58.849 37.037 0.00 0.00 0.00 3.51
4139 4400 8.034313 TCTGGGCATTCTAATTTATCTACTGT 57.966 34.615 0.00 0.00 0.00 3.55
4140 4401 9.512588 AATCTGGGCATTCTAATTTATCTACTG 57.487 33.333 0.00 0.00 0.00 2.74
4141 4402 9.512588 CAATCTGGGCATTCTAATTTATCTACT 57.487 33.333 0.00 0.00 0.00 2.57
4142 4403 9.507329 TCAATCTGGGCATTCTAATTTATCTAC 57.493 33.333 0.00 0.00 0.00 2.59
4143 4404 9.507329 GTCAATCTGGGCATTCTAATTTATCTA 57.493 33.333 0.00 0.00 0.00 1.98
4144 4405 7.449704 GGTCAATCTGGGCATTCTAATTTATCT 59.550 37.037 0.00 0.00 0.00 1.98
4145 4406 7.309438 GGGTCAATCTGGGCATTCTAATTTATC 60.309 40.741 0.00 0.00 0.00 1.75
4146 4407 6.494835 GGGTCAATCTGGGCATTCTAATTTAT 59.505 38.462 0.00 0.00 0.00 1.40
4147 4408 5.833131 GGGTCAATCTGGGCATTCTAATTTA 59.167 40.000 0.00 0.00 0.00 1.40
4148 4409 4.651045 GGGTCAATCTGGGCATTCTAATTT 59.349 41.667 0.00 0.00 0.00 1.82
4149 4410 4.218312 GGGTCAATCTGGGCATTCTAATT 58.782 43.478 0.00 0.00 0.00 1.40
4150 4411 3.437052 GGGGTCAATCTGGGCATTCTAAT 60.437 47.826 0.00 0.00 0.00 1.73
4151 4412 2.091885 GGGGTCAATCTGGGCATTCTAA 60.092 50.000 0.00 0.00 0.00 2.10
4152 4413 1.494721 GGGGTCAATCTGGGCATTCTA 59.505 52.381 0.00 0.00 0.00 2.10
4153 4414 0.259938 GGGGTCAATCTGGGCATTCT 59.740 55.000 0.00 0.00 0.00 2.40
4154 4415 1.103398 CGGGGTCAATCTGGGCATTC 61.103 60.000 0.00 0.00 0.00 2.67
4155 4416 1.076777 CGGGGTCAATCTGGGCATT 60.077 57.895 0.00 0.00 0.00 3.56
4156 4417 0.986019 TACGGGGTCAATCTGGGCAT 60.986 55.000 0.00 0.00 0.00 4.40
4157 4418 1.202099 TTACGGGGTCAATCTGGGCA 61.202 55.000 0.00 0.00 0.00 5.36
4158 4419 0.182775 ATTACGGGGTCAATCTGGGC 59.817 55.000 0.00 0.00 0.00 5.36
4159 4420 1.488812 TCATTACGGGGTCAATCTGGG 59.511 52.381 0.00 0.00 0.00 4.45
4160 4421 2.093181 TGTCATTACGGGGTCAATCTGG 60.093 50.000 0.00 0.00 0.00 3.86
4161 4422 3.260475 TGTCATTACGGGGTCAATCTG 57.740 47.619 0.00 0.00 0.00 2.90
4162 4423 3.992943 TTGTCATTACGGGGTCAATCT 57.007 42.857 0.00 0.00 0.00 2.40
4163 4424 5.124776 TGAATTTGTCATTACGGGGTCAATC 59.875 40.000 0.00 0.00 0.00 2.67
4164 4425 5.013547 TGAATTTGTCATTACGGGGTCAAT 58.986 37.500 0.00 0.00 0.00 2.57
4165 4426 4.399219 TGAATTTGTCATTACGGGGTCAA 58.601 39.130 0.00 0.00 0.00 3.18
4166 4427 4.006989 CTGAATTTGTCATTACGGGGTCA 58.993 43.478 0.00 0.00 35.07 4.02
4167 4428 3.181500 GCTGAATTTGTCATTACGGGGTC 60.181 47.826 0.00 0.00 35.07 4.46
4168 4429 2.752903 GCTGAATTTGTCATTACGGGGT 59.247 45.455 0.00 0.00 35.07 4.95
4169 4430 3.016736 AGCTGAATTTGTCATTACGGGG 58.983 45.455 0.00 0.00 35.07 5.73
4170 4431 3.689161 TGAGCTGAATTTGTCATTACGGG 59.311 43.478 0.00 0.00 35.07 5.28
4171 4432 4.393062 AGTGAGCTGAATTTGTCATTACGG 59.607 41.667 0.00 0.00 35.07 4.02
4172 4433 5.536554 AGTGAGCTGAATTTGTCATTACG 57.463 39.130 0.00 0.00 35.07 3.18
4173 4434 5.446473 CCGAGTGAGCTGAATTTGTCATTAC 60.446 44.000 0.00 0.00 35.07 1.89
4174 4435 4.631377 CCGAGTGAGCTGAATTTGTCATTA 59.369 41.667 0.00 0.00 35.07 1.90
4175 4436 3.438087 CCGAGTGAGCTGAATTTGTCATT 59.562 43.478 0.00 0.00 35.07 2.57
4176 4437 3.005554 CCGAGTGAGCTGAATTTGTCAT 58.994 45.455 0.00 0.00 35.07 3.06
4177 4438 2.224281 ACCGAGTGAGCTGAATTTGTCA 60.224 45.455 0.00 0.00 34.17 3.58
4178 4439 2.417719 ACCGAGTGAGCTGAATTTGTC 58.582 47.619 0.00 0.00 0.00 3.18
4179 4440 2.550830 ACCGAGTGAGCTGAATTTGT 57.449 45.000 0.00 0.00 0.00 2.83
4180 4441 3.904136 AAACCGAGTGAGCTGAATTTG 57.096 42.857 0.00 0.00 0.00 2.32
4181 4442 5.245531 TGATAAACCGAGTGAGCTGAATTT 58.754 37.500 0.00 0.00 0.00 1.82
4182 4443 4.832248 TGATAAACCGAGTGAGCTGAATT 58.168 39.130 0.00 0.00 0.00 2.17
4183 4444 4.471904 TGATAAACCGAGTGAGCTGAAT 57.528 40.909 0.00 0.00 0.00 2.57
4184 4445 3.953712 TGATAAACCGAGTGAGCTGAA 57.046 42.857 0.00 0.00 0.00 3.02
4185 4446 3.447229 TCATGATAAACCGAGTGAGCTGA 59.553 43.478 0.00 0.00 0.00 4.26
4186 4447 3.785486 TCATGATAAACCGAGTGAGCTG 58.215 45.455 0.00 0.00 0.00 4.24
4187 4448 3.181471 CCTCATGATAAACCGAGTGAGCT 60.181 47.826 0.00 0.00 33.53 4.09
4188 4449 3.126831 CCTCATGATAAACCGAGTGAGC 58.873 50.000 0.00 0.00 33.53 4.26
4189 4450 4.392921 ACCTCATGATAAACCGAGTGAG 57.607 45.455 0.00 0.00 34.39 3.51
4190 4451 4.819105 AACCTCATGATAAACCGAGTGA 57.181 40.909 0.00 0.00 0.00 3.41
4191 4452 6.049149 ACATAACCTCATGATAAACCGAGTG 58.951 40.000 0.00 0.00 0.00 3.51
4192 4453 6.235231 ACATAACCTCATGATAAACCGAGT 57.765 37.500 0.00 0.00 0.00 4.18
4193 4454 6.511767 GCAACATAACCTCATGATAAACCGAG 60.512 42.308 0.00 0.00 0.00 4.63
4194 4455 5.295787 GCAACATAACCTCATGATAAACCGA 59.704 40.000 0.00 0.00 0.00 4.69
4195 4456 5.065859 TGCAACATAACCTCATGATAAACCG 59.934 40.000 0.00 0.00 0.00 4.44
4196 4457 6.449635 TGCAACATAACCTCATGATAAACC 57.550 37.500 0.00 0.00 0.00 3.27
4197 4458 7.483307 ACATGCAACATAACCTCATGATAAAC 58.517 34.615 0.00 0.00 38.23 2.01
4198 4459 7.338957 TGACATGCAACATAACCTCATGATAAA 59.661 33.333 0.00 0.00 38.23 1.40
4199 4460 6.827762 TGACATGCAACATAACCTCATGATAA 59.172 34.615 0.00 0.00 38.23 1.75
4200 4461 6.355747 TGACATGCAACATAACCTCATGATA 58.644 36.000 0.00 0.00 38.23 2.15
4201 4462 5.195185 TGACATGCAACATAACCTCATGAT 58.805 37.500 0.00 0.00 38.23 2.45
4202 4463 4.587891 TGACATGCAACATAACCTCATGA 58.412 39.130 7.42 0.00 38.23 3.07
4203 4464 4.968812 TGACATGCAACATAACCTCATG 57.031 40.909 0.00 0.00 40.07 3.07
4204 4465 5.981088 TTTGACATGCAACATAACCTCAT 57.019 34.783 0.00 0.00 35.91 2.90
4205 4466 5.068329 TGTTTTGACATGCAACATAACCTCA 59.932 36.000 15.92 0.00 35.91 3.86
4206 4467 5.402270 GTGTTTTGACATGCAACATAACCTC 59.598 40.000 15.92 9.72 35.91 3.85
4207 4468 5.068987 AGTGTTTTGACATGCAACATAACCT 59.931 36.000 15.92 12.00 35.91 3.50
4208 4469 5.175491 CAGTGTTTTGACATGCAACATAACC 59.825 40.000 15.92 10.75 35.91 2.85
4209 4470 5.748152 ACAGTGTTTTGACATGCAACATAAC 59.252 36.000 13.59 13.59 35.91 1.89
4210 4471 5.900425 ACAGTGTTTTGACATGCAACATAA 58.100 33.333 0.00 0.00 35.91 1.90
4211 4472 5.299028 AGACAGTGTTTTGACATGCAACATA 59.701 36.000 0.00 0.00 35.91 2.29
4212 4473 4.098349 AGACAGTGTTTTGACATGCAACAT 59.902 37.500 0.00 0.00 35.91 2.71
4213 4474 3.443329 AGACAGTGTTTTGACATGCAACA 59.557 39.130 0.00 0.00 35.91 3.33
4214 4475 4.032703 AGACAGTGTTTTGACATGCAAC 57.967 40.909 0.00 0.00 35.91 4.17
4215 4476 3.693578 TGAGACAGTGTTTTGACATGCAA 59.306 39.130 0.00 0.00 33.88 4.08
4240 4501 8.553459 AACAAAAGTGTCTAGGAATGTATCAG 57.447 34.615 0.00 0.00 36.80 2.90
4260 4522 4.157656 AGAACTGCACAGCAACTTAACAAA 59.842 37.500 0.00 0.00 38.41 2.83
4379 4641 8.421784 GTTAATACAGATCCAACTGAGGTGATA 58.578 37.037 0.00 0.00 40.63 2.15
4540 4802 4.689345 CCCTCCGTTTCTAAATATAAGGCG 59.311 45.833 0.00 0.00 0.00 5.52
4542 4804 7.063934 ACTCCCTCCGTTTCTAAATATAAGG 57.936 40.000 0.00 0.00 0.00 2.69
4544 4806 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4615 4877 2.890808 ATGCGCCTATATACATCCGG 57.109 50.000 4.18 0.00 0.00 5.14
4629 4891 5.051106 AGTGAACAAACACATTAAAATGCGC 60.051 36.000 0.00 0.00 42.45 6.09
4639 4901 6.455360 ACTGAAATGAGTGAACAAACACAT 57.545 33.333 0.00 0.00 42.45 3.21
4917 5182 1.312815 GCTCATGGTACCAATGGCTC 58.687 55.000 20.76 2.64 0.00 4.70
4928 5193 3.828451 GCATAATATTGTGGGCTCATGGT 59.172 43.478 13.35 0.00 0.00 3.55
4932 5197 3.221771 GTGGCATAATATTGTGGGCTCA 58.778 45.455 13.35 0.00 0.00 4.26
5026 5292 6.942576 TGGAGAATTTTAGACCTCAAAGGAAG 59.057 38.462 0.00 0.00 37.67 3.46
5265 5534 8.915654 GTGCTTCAACATAATAAGAAAAACAGG 58.084 33.333 0.00 0.00 0.00 4.00
5338 5722 4.223255 TCACCGTTCACATGGGTAAGAATA 59.777 41.667 0.00 0.00 32.48 1.75
5493 5879 4.820173 ACTTCTAGGGTACACAAAAACAGC 59.180 41.667 0.00 0.00 0.00 4.40
5607 5993 3.515502 TGGGAGGTACATCTGACAGAAAG 59.484 47.826 9.70 7.93 0.00 2.62
5613 5999 2.092968 TGCATTGGGAGGTACATCTGAC 60.093 50.000 7.56 0.00 0.00 3.51
5621 6007 5.047377 GTCAAGAAAAATGCATTGGGAGGTA 60.047 40.000 13.82 0.00 0.00 3.08
5649 6035 5.709164 ACATTTGTAGATTCAAGAGCTTGCT 59.291 36.000 5.37 0.00 40.24 3.91
5733 6234 9.066892 ACACAATAGATCACATGTACAGTTTTT 57.933 29.630 0.00 0.00 0.00 1.94
5738 6239 6.036408 CACCACACAATAGATCACATGTACAG 59.964 42.308 0.00 0.00 0.00 2.74
6085 6591 8.435187 GGATATGAATGATATGATCCCTTGCTA 58.565 37.037 0.00 0.00 0.00 3.49
6119 6629 7.784073 TGGCTTTATAAAATCTGATTGGATCCA 59.216 33.333 11.44 11.44 0.00 3.41
6147 6657 1.378882 CCCACAATGGATGTCAGGCG 61.379 60.000 0.00 0.00 41.46 5.52
6165 6675 3.583086 TCTCCCGATAAAAGATGATCCCC 59.417 47.826 0.00 0.00 0.00 4.81
6186 6696 1.315690 CCATCAGGCCATGTCATGTC 58.684 55.000 5.01 0.00 0.00 3.06
6187 6697 0.627451 ACCATCAGGCCATGTCATGT 59.373 50.000 5.01 0.00 39.06 3.21
6188 6698 1.771565 AACCATCAGGCCATGTCATG 58.228 50.000 5.01 5.79 39.06 3.07
6189 6699 2.024655 AGAAACCATCAGGCCATGTCAT 60.025 45.455 5.01 0.00 39.06 3.06
6190 6700 1.355381 AGAAACCATCAGGCCATGTCA 59.645 47.619 5.01 0.00 39.06 3.58
6304 6815 4.990526 ACTTCATCAACTGGTCTTCCATT 58.009 39.130 0.00 0.00 43.43 3.16
6318 6829 4.058124 CCGACTGTTCTTCAACTTCATCA 58.942 43.478 0.00 0.00 33.17 3.07
6407 6918 7.667043 TGTGTCCAACATTAACTTATCTGTC 57.333 36.000 0.00 0.00 32.36 3.51
6419 6941 6.405538 ACAAAATTCACTTGTGTCCAACATT 58.594 32.000 0.46 0.00 38.99 2.71
6463 6989 4.962362 TGCTCAACTGGTCTATGATCCTAA 59.038 41.667 0.00 0.00 0.00 2.69
6498 7024 5.020758 GTGCGTACGTACAGAAAACAAAAA 58.979 37.500 28.14 0.00 0.00 1.94
6522 7048 2.746277 ATGCGACCGGAAACAGGC 60.746 61.111 9.46 2.07 0.00 4.85
6523 7049 0.673644 AAGATGCGACCGGAAACAGG 60.674 55.000 9.46 0.00 0.00 4.00
6524 7050 1.156736 AAAGATGCGACCGGAAACAG 58.843 50.000 9.46 0.00 0.00 3.16
6525 7051 1.265635 CAAAAGATGCGACCGGAAACA 59.734 47.619 9.46 2.34 0.00 2.83
6526 7052 1.963747 CAAAAGATGCGACCGGAAAC 58.036 50.000 9.46 0.00 0.00 2.78
6527 7053 0.239879 GCAAAAGATGCGACCGGAAA 59.760 50.000 9.46 0.00 46.87 3.13
6528 7054 1.873165 GCAAAAGATGCGACCGGAA 59.127 52.632 9.46 0.00 46.87 4.30
6529 7055 3.573558 GCAAAAGATGCGACCGGA 58.426 55.556 9.46 0.00 46.87 5.14
6537 7063 3.179830 GCAAGCAGATCAGCAAAAGATG 58.820 45.455 13.03 2.94 36.85 2.90
6538 7064 2.165845 GGCAAGCAGATCAGCAAAAGAT 59.834 45.455 13.03 0.00 36.85 2.40
6539 7065 1.542915 GGCAAGCAGATCAGCAAAAGA 59.457 47.619 13.03 0.00 36.85 2.52
6540 7066 1.544691 AGGCAAGCAGATCAGCAAAAG 59.455 47.619 13.03 0.32 36.85 2.27
6541 7067 1.271379 CAGGCAAGCAGATCAGCAAAA 59.729 47.619 13.03 0.00 36.85 2.44
6542 7068 0.885879 CAGGCAAGCAGATCAGCAAA 59.114 50.000 13.03 0.00 36.85 3.68
6543 7069 0.251033 ACAGGCAAGCAGATCAGCAA 60.251 50.000 13.03 0.00 36.85 3.91
6544 7070 0.614812 TACAGGCAAGCAGATCAGCA 59.385 50.000 13.03 0.00 36.85 4.41
6545 7071 1.872313 GATACAGGCAAGCAGATCAGC 59.128 52.381 1.07 1.07 0.00 4.26
6546 7072 2.492012 GGATACAGGCAAGCAGATCAG 58.508 52.381 0.00 0.00 0.00 2.90
6547 7073 1.141657 GGGATACAGGCAAGCAGATCA 59.858 52.381 0.00 0.00 39.74 2.92
6548 7074 1.141657 TGGGATACAGGCAAGCAGATC 59.858 52.381 0.00 0.00 39.74 2.75
6549 7075 1.216064 TGGGATACAGGCAAGCAGAT 58.784 50.000 0.00 0.00 39.74 2.90
6550 7076 1.216064 ATGGGATACAGGCAAGCAGA 58.784 50.000 0.00 0.00 39.74 4.26
6551 7077 2.936919 TATGGGATACAGGCAAGCAG 57.063 50.000 0.00 0.00 39.74 4.24
6552 7078 2.442878 ACATATGGGATACAGGCAAGCA 59.557 45.455 7.80 0.00 39.74 3.91
6553 7079 3.146104 ACATATGGGATACAGGCAAGC 57.854 47.619 7.80 0.00 39.74 4.01
6554 7080 5.882557 GGAATACATATGGGATACAGGCAAG 59.117 44.000 7.80 0.00 39.74 4.01
6555 7081 5.551583 AGGAATACATATGGGATACAGGCAA 59.448 40.000 7.80 0.00 39.74 4.52
6556 7082 5.045651 CAGGAATACATATGGGATACAGGCA 60.046 44.000 7.80 0.00 39.74 4.75
6557 7083 5.431765 CAGGAATACATATGGGATACAGGC 58.568 45.833 7.80 0.00 39.74 4.85
6564 7090 3.052329 TGTGGCAGGAATACATATGGGA 58.948 45.455 7.80 0.00 0.00 4.37
6586 7112 2.543848 GTCGAAATGTTCAGTGCAGACA 59.456 45.455 0.00 0.00 0.00 3.41
6587 7113 2.096218 GGTCGAAATGTTCAGTGCAGAC 60.096 50.000 0.00 0.00 0.00 3.51
6594 7120 7.477422 CGTAAATTTACTGGTCGAAATGTTCAG 59.523 37.037 22.57 1.32 0.00 3.02
6625 7151 7.394359 TCCAGTTAAGAAAATGAAGCAGCTAAT 59.606 33.333 0.00 0.00 32.43 1.73
6713 7271 2.511545 CTGGCATCCAGCACTGACGA 62.512 60.000 0.00 0.00 45.13 4.20
6758 7316 2.654079 CCTTCGGGAGCTGCAGACT 61.654 63.158 20.43 14.36 37.25 3.24
6887 7445 4.430765 AACGGACTAGCACGGCGG 62.431 66.667 13.24 0.66 0.00 6.13
6888 7446 2.879462 GAACGGACTAGCACGGCG 60.879 66.667 4.80 4.80 0.00 6.46
6889 7447 2.879462 CGAACGGACTAGCACGGC 60.879 66.667 10.81 2.71 0.00 5.68
7005 7568 4.514594 ATCGGGATGGGGCTGGGA 62.515 66.667 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.