Multiple sequence alignment - TraesCS2A01G171300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G171300 chr2A 100.000 2360 0 0 1 2360 126655669 126658028 0.000000e+00 4359.0
1 TraesCS2A01G171300 chr2A 81.973 294 47 5 1954 2245 150121004 150121293 6.520000e-61 244.0
2 TraesCS2A01G171300 chr2D 96.608 737 21 1 903 1635 122560835 122561571 0.000000e+00 1219.0
3 TraesCS2A01G171300 chr2D 89.117 487 42 4 1875 2360 122562199 122562675 1.560000e-166 595.0
4 TraesCS2A01G171300 chr2D 94.161 137 8 0 1727 1863 122561556 122561692 2.380000e-50 209.0
5 TraesCS2A01G171300 chr2D 100.000 28 0 0 1857 1884 122561703 122561730 4.000000e-03 52.8
6 TraesCS2A01G171300 chr7B 100.000 488 0 0 1 488 265365168 265365655 0.000000e+00 902.0
7 TraesCS2A01G171300 chr7B 98.329 419 7 0 485 903 265388264 265388682 0.000000e+00 736.0
8 TraesCS2A01G171300 chr2B 96.591 528 15 2 921 1448 175454676 175455200 0.000000e+00 872.0
9 TraesCS2A01G171300 chr6B 94.988 419 13 2 485 903 719884227 719883817 0.000000e+00 651.0
10 TraesCS2A01G171300 chr6B 81.418 409 68 8 499 902 84103828 84104233 6.290000e-86 327.0
11 TraesCS2A01G171300 chr6B 84.775 289 35 8 485 770 14018448 14018166 4.970000e-72 281.0
12 TraesCS2A01G171300 chr6B 78.571 434 74 16 485 904 709007407 709006979 3.870000e-68 268.0
13 TraesCS2A01G171300 chr4B 89.499 419 44 0 485 903 1797649 1798067 4.470000e-147 531.0
14 TraesCS2A01G171300 chr3A 84.286 420 64 2 485 903 508524007 508524425 2.180000e-110 409.0
15 TraesCS2A01G171300 chr3B 94.737 228 12 0 613 840 750875715 750875488 2.880000e-94 355.0
16 TraesCS2A01G171300 chr3B 92.704 233 17 0 4 236 750875948 750875716 1.040000e-88 337.0
17 TraesCS2A01G171300 chr3B 96.571 175 6 0 727 901 750875490 750875316 8.250000e-75 291.0
18 TraesCS2A01G171300 chrUn 80.139 433 65 17 485 907 225045676 225045255 1.060000e-78 303.0
19 TraesCS2A01G171300 chrUn 80.139 433 65 17 485 907 288114089 288113668 1.060000e-78 303.0
20 TraesCS2A01G171300 chr1D 82.965 317 48 5 1933 2248 81738447 81738758 4.970000e-72 281.0
21 TraesCS2A01G171300 chr1D 81.703 317 50 6 1933 2248 484802734 484802425 8.370000e-65 257.0
22 TraesCS2A01G171300 chr6D 81.388 317 54 4 1933 2248 202942607 202942919 1.080000e-63 254.0
23 TraesCS2A01G171300 chr7D 80.938 320 56 4 1930 2248 382726646 382726961 5.040000e-62 248.0
24 TraesCS2A01G171300 chr4D 81.757 296 49 4 1954 2248 392732171 392731880 2.340000e-60 243.0
25 TraesCS2A01G171300 chr7A 81.293 294 48 7 1954 2245 508807484 508807772 5.070000e-57 231.0
26 TraesCS2A01G171300 chr7A 80.743 296 52 4 1954 2248 78464817 78465108 2.360000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G171300 chr2A 126655669 126658028 2359 False 4359.000000 4359 100.000000 1 2360 1 chr2A.!!$F1 2359
1 TraesCS2A01G171300 chr2D 122560835 122562675 1840 False 518.950000 1219 94.971500 903 2360 4 chr2D.!!$F1 1457
2 TraesCS2A01G171300 chr2B 175454676 175455200 524 False 872.000000 872 96.591000 921 1448 1 chr2B.!!$F1 527
3 TraesCS2A01G171300 chr3B 750875316 750875948 632 True 327.666667 355 94.670667 4 901 3 chr3B.!!$R1 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 603 0.035439 AATACACGGCCAGACCAAGG 60.035 55.0 2.24 0.0 39.03 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2324 2936 0.035439 CCTTTGTAGGTGCGGATGGT 60.035 55.0 0.0 0.0 36.74 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.345257 GGGCTTTGAGAGGATGTCATACTA 59.655 45.833 0.00 0.00 38.60 1.82
49 50 4.277672 TCATACTATTAGTGACCACTCGGC 59.722 45.833 5.87 0.00 42.54 5.54
64 65 3.065786 CACTCGGCGTATTACTGAACCTA 59.934 47.826 6.85 0.00 0.00 3.08
71 72 6.380190 GGCGTATTACTGAACCTATGTAGAG 58.620 44.000 0.00 0.00 0.00 2.43
76 77 9.080097 GTATTACTGAACCTATGTAGAGACCAT 57.920 37.037 0.00 0.00 0.00 3.55
90 91 5.350504 AGAGACCATCATGTCTTTGGTAG 57.649 43.478 10.76 0.00 45.41 3.18
96 97 4.082787 CCATCATGTCTTTGGTAGCGTTTT 60.083 41.667 0.00 0.00 0.00 2.43
117 118 8.458843 CGTTTTCTGTGAGGATAATTATTTGGT 58.541 33.333 0.00 0.00 0.00 3.67
150 151 3.076621 TGTCAATGTGGATGCACTCTTC 58.923 45.455 18.75 6.13 0.00 2.87
159 160 2.274437 GATGCACTCTTCATTCTGCGA 58.726 47.619 0.00 0.00 31.96 5.10
176 177 1.967762 CGATTTGCATTGCGTCAGTT 58.032 45.000 3.84 0.00 0.00 3.16
177 178 1.645265 CGATTTGCATTGCGTCAGTTG 59.355 47.619 3.84 0.00 0.00 3.16
213 214 3.057969 TCGATTTGATGCACCTCTTGT 57.942 42.857 0.00 0.00 0.00 3.16
224 225 6.489700 TGATGCACCTCTTGTATGAAGAAAAA 59.510 34.615 0.00 0.00 29.25 1.94
282 283 8.997621 AATTTGTGATGATTTTCTGATTCAGG 57.002 30.769 13.59 0.00 31.51 3.86
283 284 6.519679 TTGTGATGATTTTCTGATTCAGGG 57.480 37.500 13.59 0.00 31.51 4.45
284 285 4.400251 TGTGATGATTTTCTGATTCAGGGC 59.600 41.667 13.59 0.66 31.51 5.19
285 286 4.400251 GTGATGATTTTCTGATTCAGGGCA 59.600 41.667 13.59 5.77 31.51 5.36
286 287 5.018149 TGATGATTTTCTGATTCAGGGCAA 58.982 37.500 13.59 4.98 31.51 4.52
287 288 5.481122 TGATGATTTTCTGATTCAGGGCAAA 59.519 36.000 13.59 10.42 31.51 3.68
288 289 6.155565 TGATGATTTTCTGATTCAGGGCAAAT 59.844 34.615 13.59 14.00 31.51 2.32
289 290 7.342541 TGATGATTTTCTGATTCAGGGCAAATA 59.657 33.333 13.59 0.00 31.51 1.40
290 291 7.104043 TGATTTTCTGATTCAGGGCAAATAG 57.896 36.000 13.59 0.00 31.51 1.73
291 292 6.664816 TGATTTTCTGATTCAGGGCAAATAGT 59.335 34.615 13.59 0.00 31.51 2.12
292 293 5.902613 TTTCTGATTCAGGGCAAATAGTG 57.097 39.130 13.59 0.00 31.51 2.74
293 294 4.574674 TCTGATTCAGGGCAAATAGTGT 57.425 40.909 13.59 0.00 31.51 3.55
294 295 5.692115 TCTGATTCAGGGCAAATAGTGTA 57.308 39.130 13.59 0.00 31.51 2.90
295 296 5.428253 TCTGATTCAGGGCAAATAGTGTAC 58.572 41.667 13.59 0.00 31.51 2.90
296 297 5.045942 TCTGATTCAGGGCAAATAGTGTACA 60.046 40.000 13.59 0.00 31.51 2.90
297 298 4.941263 TGATTCAGGGCAAATAGTGTACAC 59.059 41.667 18.56 18.56 0.00 2.90
298 299 4.359434 TTCAGGGCAAATAGTGTACACA 57.641 40.909 27.06 13.77 0.00 3.72
299 300 3.937814 TCAGGGCAAATAGTGTACACAG 58.062 45.455 27.06 12.28 0.00 3.66
300 301 3.580895 TCAGGGCAAATAGTGTACACAGA 59.419 43.478 27.06 15.16 0.00 3.41
301 302 3.935203 CAGGGCAAATAGTGTACACAGAG 59.065 47.826 27.06 12.93 0.00 3.35
302 303 3.838317 AGGGCAAATAGTGTACACAGAGA 59.162 43.478 27.06 10.19 0.00 3.10
303 304 4.081420 AGGGCAAATAGTGTACACAGAGAG 60.081 45.833 27.06 14.57 0.00 3.20
304 305 4.081642 GGGCAAATAGTGTACACAGAGAGA 60.082 45.833 27.06 6.06 0.00 3.10
305 306 5.479306 GGCAAATAGTGTACACAGAGAGAA 58.521 41.667 27.06 4.59 0.00 2.87
306 307 6.109359 GGCAAATAGTGTACACAGAGAGAAT 58.891 40.000 27.06 7.04 0.00 2.40
307 308 6.256757 GGCAAATAGTGTACACAGAGAGAATC 59.743 42.308 27.06 7.89 0.00 2.52
308 309 6.813649 GCAAATAGTGTACACAGAGAGAATCA 59.186 38.462 27.06 0.49 37.82 2.57
309 310 7.493971 GCAAATAGTGTACACAGAGAGAATCAT 59.506 37.037 27.06 5.09 37.82 2.45
310 311 9.376075 CAAATAGTGTACACAGAGAGAATCATT 57.624 33.333 27.06 4.89 37.82 2.57
313 314 7.946381 AGTGTACACAGAGAGAATCATTAGA 57.054 36.000 27.06 0.00 37.82 2.10
314 315 8.354711 AGTGTACACAGAGAGAATCATTAGAA 57.645 34.615 27.06 0.00 37.82 2.10
315 316 8.465999 AGTGTACACAGAGAGAATCATTAGAAG 58.534 37.037 27.06 0.00 37.82 2.85
316 317 8.462811 GTGTACACAGAGAGAATCATTAGAAGA 58.537 37.037 21.14 0.00 37.82 2.87
317 318 8.462811 TGTACACAGAGAGAATCATTAGAAGAC 58.537 37.037 0.00 0.00 37.82 3.01
318 319 7.473735 ACACAGAGAGAATCATTAGAAGACA 57.526 36.000 0.00 0.00 37.82 3.41
319 320 7.901029 ACACAGAGAGAATCATTAGAAGACAA 58.099 34.615 0.00 0.00 37.82 3.18
320 321 8.034215 ACACAGAGAGAATCATTAGAAGACAAG 58.966 37.037 0.00 0.00 37.82 3.16
321 322 7.010367 CACAGAGAGAATCATTAGAAGACAAGC 59.990 40.741 0.00 0.00 37.82 4.01
322 323 7.040494 CAGAGAGAATCATTAGAAGACAAGCA 58.960 38.462 0.00 0.00 37.82 3.91
323 324 7.548427 CAGAGAGAATCATTAGAAGACAAGCAA 59.452 37.037 0.00 0.00 37.82 3.91
324 325 8.266473 AGAGAGAATCATTAGAAGACAAGCAAT 58.734 33.333 0.00 0.00 37.82 3.56
325 326 8.211116 AGAGAATCATTAGAAGACAAGCAATG 57.789 34.615 0.00 0.00 37.82 2.82
326 327 7.828223 AGAGAATCATTAGAAGACAAGCAATGT 59.172 33.333 0.00 0.00 41.67 2.71
327 328 7.759465 AGAATCATTAGAAGACAAGCAATGTG 58.241 34.615 0.00 0.00 44.12 3.21
328 329 7.392673 AGAATCATTAGAAGACAAGCAATGTGT 59.607 33.333 0.00 0.00 44.12 3.72
329 330 8.565896 AATCATTAGAAGACAAGCAATGTGTA 57.434 30.769 0.00 0.00 44.12 2.90
330 331 7.601073 TCATTAGAAGACAAGCAATGTGTAG 57.399 36.000 0.00 0.00 44.12 2.74
331 332 7.161404 TCATTAGAAGACAAGCAATGTGTAGT 58.839 34.615 0.00 0.00 44.12 2.73
332 333 7.661437 TCATTAGAAGACAAGCAATGTGTAGTT 59.339 33.333 0.00 0.00 44.12 2.24
333 334 5.679734 AGAAGACAAGCAATGTGTAGTTG 57.320 39.130 0.00 0.00 44.12 3.16
334 335 5.368145 AGAAGACAAGCAATGTGTAGTTGA 58.632 37.500 0.00 0.00 44.12 3.18
335 336 5.237344 AGAAGACAAGCAATGTGTAGTTGAC 59.763 40.000 0.00 0.00 44.12 3.18
336 337 4.708177 AGACAAGCAATGTGTAGTTGACT 58.292 39.130 0.00 0.00 44.12 3.41
337 338 4.512944 AGACAAGCAATGTGTAGTTGACTG 59.487 41.667 0.00 0.00 44.12 3.51
338 339 4.199310 ACAAGCAATGTGTAGTTGACTGT 58.801 39.130 0.00 0.00 41.93 3.55
339 340 4.640201 ACAAGCAATGTGTAGTTGACTGTT 59.360 37.500 0.00 0.00 41.93 3.16
340 341 5.125417 ACAAGCAATGTGTAGTTGACTGTTT 59.875 36.000 0.00 0.00 41.93 2.83
341 342 5.424121 AGCAATGTGTAGTTGACTGTTTC 57.576 39.130 0.00 0.00 0.00 2.78
342 343 4.881273 AGCAATGTGTAGTTGACTGTTTCA 59.119 37.500 0.00 0.00 0.00 2.69
343 344 5.008019 AGCAATGTGTAGTTGACTGTTTCAG 59.992 40.000 0.00 0.00 34.94 3.02
344 345 5.207768 CAATGTGTAGTTGACTGTTTCAGC 58.792 41.667 0.00 0.00 34.94 4.26
345 346 3.202906 TGTGTAGTTGACTGTTTCAGCC 58.797 45.455 0.00 0.00 36.10 4.85
346 347 3.202906 GTGTAGTTGACTGTTTCAGCCA 58.797 45.455 0.00 0.00 36.10 4.75
347 348 3.248602 GTGTAGTTGACTGTTTCAGCCAG 59.751 47.826 0.00 0.00 36.10 4.85
348 349 3.133901 TGTAGTTGACTGTTTCAGCCAGA 59.866 43.478 0.00 0.00 36.10 3.86
349 350 3.281727 AGTTGACTGTTTCAGCCAGAA 57.718 42.857 0.00 0.00 36.10 3.02
350 351 3.620488 AGTTGACTGTTTCAGCCAGAAA 58.380 40.909 0.00 0.00 43.71 2.52
364 365 9.751542 TTTCAGCCAGAAAAATATTCGTAAAAA 57.248 25.926 0.00 0.00 43.00 1.94
399 400 7.510428 CATAACTGCAAGAATTAAAATGCGT 57.490 32.000 0.00 0.00 41.61 5.24
400 401 7.603515 CATAACTGCAAGAATTAAAATGCGTC 58.396 34.615 0.00 0.00 41.61 5.19
401 402 4.158384 ACTGCAAGAATTAAAATGCGTCG 58.842 39.130 0.00 0.00 41.61 5.12
402 403 4.083537 ACTGCAAGAATTAAAATGCGTCGA 60.084 37.500 0.00 0.00 41.61 4.20
403 404 4.788690 TGCAAGAATTAAAATGCGTCGAA 58.211 34.783 0.00 0.00 41.61 3.71
404 405 4.851014 TGCAAGAATTAAAATGCGTCGAAG 59.149 37.500 0.00 0.00 41.61 3.79
405 406 4.262976 GCAAGAATTAAAATGCGTCGAAGG 59.737 41.667 0.00 0.00 0.00 3.46
406 407 4.016113 AGAATTAAAATGCGTCGAAGGC 57.984 40.909 0.00 1.30 0.00 4.35
417 418 2.924432 GTCGAAGGCGGATAATTTCG 57.076 50.000 0.00 0.00 42.61 3.46
418 419 2.199236 GTCGAAGGCGGATAATTTCGT 58.801 47.619 5.54 0.00 42.08 3.85
419 420 3.374745 GTCGAAGGCGGATAATTTCGTA 58.625 45.455 5.54 0.00 42.08 3.43
420 421 3.798337 GTCGAAGGCGGATAATTTCGTAA 59.202 43.478 5.54 0.00 42.08 3.18
421 422 4.268405 GTCGAAGGCGGATAATTTCGTAAA 59.732 41.667 5.54 0.00 42.08 2.01
422 423 5.050567 GTCGAAGGCGGATAATTTCGTAAAT 60.051 40.000 5.54 0.00 42.08 1.40
423 424 5.524646 TCGAAGGCGGATAATTTCGTAAATT 59.475 36.000 5.54 9.46 42.08 1.82
424 425 6.037391 TCGAAGGCGGATAATTTCGTAAATTT 59.963 34.615 9.70 0.00 42.08 1.82
425 426 6.140108 CGAAGGCGGATAATTTCGTAAATTTG 59.860 38.462 0.00 0.00 41.16 2.32
426 427 6.687081 AGGCGGATAATTTCGTAAATTTGA 57.313 33.333 0.00 0.00 41.16 2.69
427 428 7.272037 AGGCGGATAATTTCGTAAATTTGAT 57.728 32.000 0.00 1.57 41.16 2.57
428 429 8.385898 AGGCGGATAATTTCGTAAATTTGATA 57.614 30.769 0.00 0.00 41.16 2.15
429 430 8.842280 AGGCGGATAATTTCGTAAATTTGATAA 58.158 29.630 0.00 0.00 41.16 1.75
430 431 9.453325 GGCGGATAATTTCGTAAATTTGATAAA 57.547 29.630 0.00 0.00 41.16 1.40
450 451 8.609176 TGATAAAATGGTAAAGTAAGACGATGC 58.391 33.333 0.00 0.00 0.00 3.91
451 452 5.464965 AAATGGTAAAGTAAGACGATGCG 57.535 39.130 0.00 0.00 0.00 4.73
452 453 3.581024 TGGTAAAGTAAGACGATGCGT 57.419 42.857 0.00 0.00 45.10 5.24
453 454 3.247442 TGGTAAAGTAAGACGATGCGTG 58.753 45.455 0.00 0.00 41.37 5.34
454 455 2.601763 GGTAAAGTAAGACGATGCGTGG 59.398 50.000 0.00 0.00 41.37 4.94
455 456 1.722011 AAAGTAAGACGATGCGTGGG 58.278 50.000 0.00 0.00 41.37 4.61
456 457 0.739813 AAGTAAGACGATGCGTGGGC 60.740 55.000 0.00 0.00 41.37 5.36
457 458 1.153628 GTAAGACGATGCGTGGGCT 60.154 57.895 0.00 0.00 41.37 5.19
458 459 0.101759 GTAAGACGATGCGTGGGCTA 59.898 55.000 0.00 0.00 41.37 3.93
459 460 1.037493 TAAGACGATGCGTGGGCTAT 58.963 50.000 0.00 0.00 41.37 2.97
460 461 0.249489 AAGACGATGCGTGGGCTATC 60.249 55.000 0.00 0.00 41.37 2.08
461 462 1.067416 GACGATGCGTGGGCTATCA 59.933 57.895 0.00 0.00 41.37 2.15
462 463 0.319900 GACGATGCGTGGGCTATCAT 60.320 55.000 0.00 0.00 41.37 2.45
463 464 0.601046 ACGATGCGTGGGCTATCATG 60.601 55.000 0.00 0.00 39.18 3.07
464 465 1.293963 CGATGCGTGGGCTATCATGG 61.294 60.000 0.00 0.00 40.82 3.66
465 466 0.957395 GATGCGTGGGCTATCATGGG 60.957 60.000 0.00 0.00 40.82 4.00
466 467 1.708993 ATGCGTGGGCTATCATGGGT 61.709 55.000 0.00 0.00 40.82 4.51
467 468 1.152963 GCGTGGGCTATCATGGGTT 60.153 57.895 0.00 0.00 35.83 4.11
468 469 0.751643 GCGTGGGCTATCATGGGTTT 60.752 55.000 0.00 0.00 35.83 3.27
469 470 1.024271 CGTGGGCTATCATGGGTTTG 58.976 55.000 0.00 0.00 0.00 2.93
470 471 1.408127 CGTGGGCTATCATGGGTTTGA 60.408 52.381 0.00 0.00 0.00 2.69
471 472 2.301346 GTGGGCTATCATGGGTTTGAG 58.699 52.381 0.00 0.00 0.00 3.02
472 473 1.322442 GGGCTATCATGGGTTTGAGC 58.678 55.000 0.00 0.00 0.00 4.26
473 474 1.410083 GGGCTATCATGGGTTTGAGCA 60.410 52.381 0.00 0.00 0.00 4.26
474 475 2.590821 GGCTATCATGGGTTTGAGCAT 58.409 47.619 0.00 0.00 0.00 3.79
475 476 2.961062 GGCTATCATGGGTTTGAGCATT 59.039 45.455 0.00 0.00 0.00 3.56
476 477 3.385755 GGCTATCATGGGTTTGAGCATTT 59.614 43.478 0.00 0.00 0.00 2.32
477 478 4.141869 GGCTATCATGGGTTTGAGCATTTT 60.142 41.667 0.00 0.00 0.00 1.82
478 479 5.045872 GCTATCATGGGTTTGAGCATTTTC 58.954 41.667 0.00 0.00 0.00 2.29
479 480 5.394443 GCTATCATGGGTTTGAGCATTTTCA 60.394 40.000 0.00 0.00 0.00 2.69
480 481 4.524316 TCATGGGTTTGAGCATTTTCAG 57.476 40.909 0.00 0.00 0.00 3.02
481 482 3.896888 TCATGGGTTTGAGCATTTTCAGT 59.103 39.130 0.00 0.00 0.00 3.41
482 483 3.731652 TGGGTTTGAGCATTTTCAGTG 57.268 42.857 0.00 0.00 0.00 3.66
483 484 2.364970 TGGGTTTGAGCATTTTCAGTGG 59.635 45.455 0.00 0.00 0.00 4.00
484 485 2.289010 GGGTTTGAGCATTTTCAGTGGG 60.289 50.000 0.00 0.00 0.00 4.61
485 486 2.407090 GTTTGAGCATTTTCAGTGGGC 58.593 47.619 0.00 0.00 0.00 5.36
486 487 1.999648 TTGAGCATTTTCAGTGGGCT 58.000 45.000 0.00 0.00 37.56 5.19
487 488 1.250328 TGAGCATTTTCAGTGGGCTG 58.750 50.000 0.00 0.00 43.87 4.85
501 502 2.968206 GCTGAAGCCTTTGCCTGG 59.032 61.111 0.00 0.00 38.69 4.45
502 503 1.604593 GCTGAAGCCTTTGCCTGGA 60.605 57.895 0.00 0.00 38.69 3.86
503 504 1.181098 GCTGAAGCCTTTGCCTGGAA 61.181 55.000 0.00 0.00 38.69 3.53
504 505 0.600057 CTGAAGCCTTTGCCTGGAAC 59.400 55.000 0.00 0.00 38.69 3.62
505 506 1.172180 TGAAGCCTTTGCCTGGAACG 61.172 55.000 0.00 0.00 38.69 3.95
506 507 0.889186 GAAGCCTTTGCCTGGAACGA 60.889 55.000 0.00 0.00 38.69 3.85
507 508 0.467290 AAGCCTTTGCCTGGAACGAA 60.467 50.000 0.00 0.00 38.69 3.85
508 509 1.172812 AGCCTTTGCCTGGAACGAAC 61.173 55.000 0.00 0.00 38.69 3.95
509 510 1.956802 CCTTTGCCTGGAACGAACC 59.043 57.895 0.00 0.00 0.00 3.62
510 511 1.574428 CTTTGCCTGGAACGAACCG 59.426 57.895 0.00 0.00 0.00 4.44
511 512 0.882927 CTTTGCCTGGAACGAACCGA 60.883 55.000 0.00 0.00 0.00 4.69
512 513 0.882927 TTTGCCTGGAACGAACCGAG 60.883 55.000 0.00 0.00 0.00 4.63
513 514 2.434359 GCCTGGAACGAACCGAGG 60.434 66.667 0.00 3.43 34.07 4.63
514 515 2.939261 GCCTGGAACGAACCGAGGA 61.939 63.158 17.17 0.00 33.34 3.71
515 516 1.898154 CCTGGAACGAACCGAGGAT 59.102 57.895 0.00 0.00 33.34 3.24
516 517 0.460284 CCTGGAACGAACCGAGGATG 60.460 60.000 0.00 0.00 33.34 3.51
517 518 0.530744 CTGGAACGAACCGAGGATGA 59.469 55.000 0.00 0.00 0.00 2.92
518 519 0.970640 TGGAACGAACCGAGGATGAA 59.029 50.000 0.00 0.00 0.00 2.57
519 520 1.067142 TGGAACGAACCGAGGATGAAG 60.067 52.381 0.00 0.00 0.00 3.02
520 521 1.203994 GGAACGAACCGAGGATGAAGA 59.796 52.381 0.00 0.00 0.00 2.87
521 522 2.260481 GAACGAACCGAGGATGAAGAC 58.740 52.381 0.00 0.00 0.00 3.01
522 523 0.170561 ACGAACCGAGGATGAAGACG 59.829 55.000 0.00 0.00 0.00 4.18
523 524 0.450583 CGAACCGAGGATGAAGACGA 59.549 55.000 0.00 0.00 0.00 4.20
524 525 1.135489 CGAACCGAGGATGAAGACGAA 60.135 52.381 0.00 0.00 0.00 3.85
525 526 2.531206 GAACCGAGGATGAAGACGAAG 58.469 52.381 0.00 0.00 0.00 3.79
526 527 0.173708 ACCGAGGATGAAGACGAAGC 59.826 55.000 0.00 0.00 0.00 3.86
527 528 0.528684 CCGAGGATGAAGACGAAGCC 60.529 60.000 0.00 0.00 0.00 4.35
528 529 0.173481 CGAGGATGAAGACGAAGCCA 59.827 55.000 0.00 0.00 0.00 4.75
529 530 1.202463 CGAGGATGAAGACGAAGCCAT 60.202 52.381 0.00 0.00 0.00 4.40
530 531 2.208431 GAGGATGAAGACGAAGCCATG 58.792 52.381 0.00 0.00 0.00 3.66
531 532 1.556911 AGGATGAAGACGAAGCCATGT 59.443 47.619 0.00 0.00 0.00 3.21
532 533 1.936547 GGATGAAGACGAAGCCATGTC 59.063 52.381 0.00 0.00 35.33 3.06
533 534 1.590238 GATGAAGACGAAGCCATGTCG 59.410 52.381 2.92 2.92 44.10 4.35
534 535 0.601057 TGAAGACGAAGCCATGTCGA 59.399 50.000 10.77 0.00 41.02 4.20
535 536 1.000394 TGAAGACGAAGCCATGTCGAA 60.000 47.619 10.77 0.00 41.02 3.71
536 537 1.390463 GAAGACGAAGCCATGTCGAAC 59.610 52.381 10.77 5.08 41.02 3.95
537 538 0.603569 AGACGAAGCCATGTCGAACT 59.396 50.000 10.77 6.93 41.02 3.01
538 539 1.000955 AGACGAAGCCATGTCGAACTT 59.999 47.619 10.77 0.00 41.02 2.66
539 540 1.126846 GACGAAGCCATGTCGAACTTG 59.873 52.381 10.77 0.00 41.02 3.16
540 541 1.148310 CGAAGCCATGTCGAACTTGT 58.852 50.000 0.00 0.00 41.02 3.16
541 542 1.531149 CGAAGCCATGTCGAACTTGTT 59.469 47.619 0.00 0.00 41.02 2.83
542 543 2.032030 CGAAGCCATGTCGAACTTGTTT 60.032 45.455 0.00 0.00 41.02 2.83
543 544 3.300009 GAAGCCATGTCGAACTTGTTTG 58.700 45.455 0.00 0.00 0.00 2.93
544 545 1.608590 AGCCATGTCGAACTTGTTTGG 59.391 47.619 0.00 0.00 0.00 3.28
545 546 1.335872 GCCATGTCGAACTTGTTTGGG 60.336 52.381 0.00 0.00 0.00 4.12
546 547 1.335872 CCATGTCGAACTTGTTTGGGC 60.336 52.381 0.00 0.00 0.00 5.36
547 548 1.336440 CATGTCGAACTTGTTTGGGCA 59.664 47.619 0.00 0.00 31.46 5.36
548 549 0.736053 TGTCGAACTTGTTTGGGCAC 59.264 50.000 0.00 0.00 0.00 5.01
549 550 0.316689 GTCGAACTTGTTTGGGCACG 60.317 55.000 0.00 0.00 0.00 5.34
550 551 1.657181 CGAACTTGTTTGGGCACGC 60.657 57.895 0.00 0.00 0.00 5.34
551 552 1.733526 GAACTTGTTTGGGCACGCT 59.266 52.632 0.00 0.00 0.00 5.07
552 553 0.594796 GAACTTGTTTGGGCACGCTG 60.595 55.000 0.00 0.00 0.00 5.18
553 554 2.355009 CTTGTTTGGGCACGCTGC 60.355 61.111 1.92 1.92 44.08 5.25
554 555 4.263209 TTGTTTGGGCACGCTGCG 62.263 61.111 21.91 21.91 46.21 5.18
589 590 7.475137 AGAGCCATCTCTCCTATAAATACAC 57.525 40.000 0.00 0.00 46.32 2.90
590 591 6.151985 AGAGCCATCTCTCCTATAAATACACG 59.848 42.308 0.00 0.00 46.32 4.49
591 592 5.186021 AGCCATCTCTCCTATAAATACACGG 59.814 44.000 0.00 0.00 0.00 4.94
592 593 5.411781 CCATCTCTCCTATAAATACACGGC 58.588 45.833 0.00 0.00 0.00 5.68
593 594 5.411781 CATCTCTCCTATAAATACACGGCC 58.588 45.833 0.00 0.00 0.00 6.13
594 595 4.476297 TCTCTCCTATAAATACACGGCCA 58.524 43.478 2.24 0.00 0.00 5.36
595 596 4.523173 TCTCTCCTATAAATACACGGCCAG 59.477 45.833 2.24 0.00 0.00 4.85
596 597 4.476297 TCTCCTATAAATACACGGCCAGA 58.524 43.478 2.24 0.00 0.00 3.86
597 598 4.280174 TCTCCTATAAATACACGGCCAGAC 59.720 45.833 2.24 0.00 0.00 3.51
598 599 3.322828 TCCTATAAATACACGGCCAGACC 59.677 47.826 2.24 0.00 0.00 3.85
599 600 3.070446 CCTATAAATACACGGCCAGACCA 59.930 47.826 2.24 0.00 39.03 4.02
600 601 3.637911 ATAAATACACGGCCAGACCAA 57.362 42.857 2.24 0.00 39.03 3.67
601 602 1.821216 AAATACACGGCCAGACCAAG 58.179 50.000 2.24 0.00 39.03 3.61
602 603 0.035439 AATACACGGCCAGACCAAGG 60.035 55.000 2.24 0.00 39.03 3.61
609 610 3.365265 CCAGACCAAGGCAACGGC 61.365 66.667 0.00 0.00 46.39 5.68
610 611 2.594303 CAGACCAAGGCAACGGCA 60.594 61.111 0.00 0.00 43.71 5.69
611 612 2.192861 CAGACCAAGGCAACGGCAA 61.193 57.895 0.00 0.00 43.71 4.52
631 632 1.473278 AGATCCTCAACGTTCGACTCC 59.527 52.381 0.00 0.00 0.00 3.85
645 646 0.613777 GACTCCAACGGATCCCTGTT 59.386 55.000 6.06 2.36 42.33 3.16
692 693 0.518636 GTGCCGTGTACACTCGTCTA 59.481 55.000 23.01 1.84 35.12 2.59
699 700 5.562307 GCCGTGTACACTCGTCTATGATTAT 60.562 44.000 23.01 0.00 0.00 1.28
716 717 1.957668 TATATGCTGTGCTGCACTGG 58.042 50.000 31.62 24.35 46.33 4.00
723 724 2.030412 TGCTGCACTGGTGTACCG 59.970 61.111 0.00 0.00 39.43 4.02
803 915 1.944676 CTCTGGCGCGAATACGGTC 60.945 63.158 12.10 0.00 40.15 4.79
815 927 3.061666 CGAATACGGTCAAAATACGGACG 60.062 47.826 0.00 0.00 34.87 4.79
901 1013 1.336795 CGGCCACCAAAGACCATTTTC 60.337 52.381 2.24 0.00 0.00 2.29
928 1040 3.181454 GGCCTCATGTTATATATCCGGGG 60.181 52.174 0.00 0.00 0.00 5.73
1017 1129 1.153086 AATGGATGAGGTGGCGCTC 60.153 57.895 7.64 0.00 0.00 5.03
1347 1459 1.811266 CCTCGGTGGAGTTCGCATG 60.811 63.158 0.00 0.00 38.70 4.06
1375 1487 6.014242 TCTCAGGTAAGAAGAAGAATTGCTGA 60.014 38.462 0.00 0.00 0.00 4.26
1429 1541 1.804748 GCTAGTGCTTTTACGTTGGCT 59.195 47.619 0.00 0.00 36.03 4.75
1522 1634 3.486875 CGTGACTGATCTATGCGTGTGTA 60.487 47.826 0.00 0.00 0.00 2.90
1586 1702 3.580458 AGCAGACTGTTCCATGTACTTCT 59.420 43.478 3.99 0.00 0.00 2.85
1615 1731 1.203052 CCACTGTCCATGAAACATGCC 59.797 52.381 0.00 0.86 0.00 4.40
1628 1744 0.885879 ACATGCCGAGAGTTGTACGA 59.114 50.000 0.00 0.00 0.00 3.43
1720 1836 9.829507 TTACAAATATCATGCCTTAAATTTGGG 57.170 29.630 0.00 4.40 38.18 4.12
1721 1837 7.860584 ACAAATATCATGCCTTAAATTTGGGT 58.139 30.769 0.00 0.00 38.18 4.51
1722 1838 7.769970 ACAAATATCATGCCTTAAATTTGGGTG 59.230 33.333 0.00 0.00 38.18 4.61
1723 1839 4.758773 ATCATGCCTTAAATTTGGGTGG 57.241 40.909 0.00 0.00 0.00 4.61
1724 1840 2.836981 TCATGCCTTAAATTTGGGTGGG 59.163 45.455 0.00 0.00 0.00 4.61
1725 1841 2.407340 TGCCTTAAATTTGGGTGGGT 57.593 45.000 0.00 0.00 0.00 4.51
1726 1842 3.544698 TGCCTTAAATTTGGGTGGGTA 57.455 42.857 0.00 0.00 0.00 3.69
1727 1843 3.436243 TGCCTTAAATTTGGGTGGGTAG 58.564 45.455 0.00 0.00 0.00 3.18
1728 1844 3.181416 TGCCTTAAATTTGGGTGGGTAGT 60.181 43.478 0.00 0.00 0.00 2.73
1729 1845 3.835978 GCCTTAAATTTGGGTGGGTAGTT 59.164 43.478 0.00 0.00 0.00 2.24
1730 1846 4.322424 GCCTTAAATTTGGGTGGGTAGTTG 60.322 45.833 0.00 0.00 0.00 3.16
1731 1847 4.322424 CCTTAAATTTGGGTGGGTAGTTGC 60.322 45.833 0.00 0.00 0.00 4.17
1732 1848 2.390225 AATTTGGGTGGGTAGTTGCA 57.610 45.000 0.00 0.00 0.00 4.08
1733 1849 1.627864 ATTTGGGTGGGTAGTTGCAC 58.372 50.000 0.00 0.00 0.00 4.57
1734 1850 0.820074 TTTGGGTGGGTAGTTGCACG 60.820 55.000 0.00 0.00 0.00 5.34
1735 1851 2.359478 GGGTGGGTAGTTGCACGG 60.359 66.667 0.00 0.00 0.00 4.94
1736 1852 3.053896 GGTGGGTAGTTGCACGGC 61.054 66.667 0.00 0.00 0.00 5.68
1737 1853 2.032071 GTGGGTAGTTGCACGGCT 59.968 61.111 0.00 0.00 0.00 5.52
1738 1854 2.033194 GTGGGTAGTTGCACGGCTC 61.033 63.158 0.00 0.00 0.00 4.70
1739 1855 2.214216 TGGGTAGTTGCACGGCTCT 61.214 57.895 0.00 0.00 0.00 4.09
1744 1860 2.409975 GTAGTTGCACGGCTCTTTGTA 58.590 47.619 0.00 0.00 0.00 2.41
1754 1870 5.168569 CACGGCTCTTTGTAAGACTATGAA 58.831 41.667 0.00 0.00 33.12 2.57
1781 1897 4.424711 ATGGTGGGCGGCGTCAAT 62.425 61.111 15.59 0.00 0.00 2.57
1906 2517 2.517875 ATGGCCTCGCTTCCATGC 60.518 61.111 3.32 0.00 41.26 4.06
1907 2518 3.052909 ATGGCCTCGCTTCCATGCT 62.053 57.895 3.32 0.00 41.26 3.79
1908 2519 2.899339 GGCCTCGCTTCCATGCTC 60.899 66.667 0.00 0.00 0.00 4.26
1909 2520 3.267860 GCCTCGCTTCCATGCTCG 61.268 66.667 0.00 0.00 0.00 5.03
1910 2521 2.496341 CCTCGCTTCCATGCTCGA 59.504 61.111 0.00 0.00 0.00 4.04
2016 2627 4.481368 AAAGTCCGTAATGCATAGGTGA 57.519 40.909 0.00 0.00 0.00 4.02
2018 2629 5.801531 AAGTCCGTAATGCATAGGTGATA 57.198 39.130 0.00 0.00 0.00 2.15
2019 2630 5.135508 AGTCCGTAATGCATAGGTGATAC 57.864 43.478 0.00 0.00 0.00 2.24
2061 2672 7.839907 AGCATCCTTCATTTAATGTTTTAGCA 58.160 30.769 4.77 0.00 0.00 3.49
2095 2707 3.507233 TCATGCAATGGTGGACTTCTTTC 59.493 43.478 0.00 0.00 46.73 2.62
2122 2734 2.870411 AGTGTTTTGTCTAGGTTCACGC 59.130 45.455 0.00 0.00 0.00 5.34
2123 2735 2.032290 GTGTTTTGTCTAGGTTCACGCC 60.032 50.000 0.00 0.00 0.00 5.68
2124 2736 1.534163 GTTTTGTCTAGGTTCACGCCC 59.466 52.381 0.00 0.00 0.00 6.13
2125 2737 0.759959 TTTGTCTAGGTTCACGCCCA 59.240 50.000 0.00 0.00 0.00 5.36
2126 2738 0.981183 TTGTCTAGGTTCACGCCCAT 59.019 50.000 0.00 0.00 0.00 4.00
2128 2740 0.535335 GTCTAGGTTCACGCCCATGA 59.465 55.000 0.00 0.00 0.00 3.07
2204 2816 8.562892 CCTTGTCATATCAGATTTTTCGCTTAT 58.437 33.333 0.00 0.00 0.00 1.73
2221 2833 0.617935 TATGTGGCAGCCTTAGCACA 59.382 50.000 14.15 8.61 43.56 4.57
2232 2844 4.512944 CAGCCTTAGCACATGTATAAGGTG 59.487 45.833 30.83 25.67 44.91 4.00
2233 2845 4.408921 AGCCTTAGCACATGTATAAGGTGA 59.591 41.667 30.83 11.88 44.91 4.02
2236 2848 5.237344 CCTTAGCACATGTATAAGGTGAAGC 59.763 44.000 26.65 12.84 40.38 3.86
2237 2849 4.220693 AGCACATGTATAAGGTGAAGCA 57.779 40.909 0.00 0.00 34.52 3.91
2241 2853 5.163622 GCACATGTATAAGGTGAAGCATTGT 60.164 40.000 0.00 0.00 34.52 2.71
2248 2860 0.251341 GGTGAAGCATTGTGAGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
2249 2861 0.883833 GTGAAGCATTGTGAGGGGTG 59.116 55.000 0.00 0.00 0.00 4.61
2253 2865 2.751436 CATTGTGAGGGGTGGGCG 60.751 66.667 0.00 0.00 0.00 6.13
2271 2883 1.452833 GGATGGGCTGCCAACTCTC 60.453 63.158 22.05 3.59 0.00 3.20
2272 2884 1.817099 GATGGGCTGCCAACTCTCG 60.817 63.158 22.05 0.00 0.00 4.04
2280 2892 0.603569 TGCCAACTCTCGTCTTCTCC 59.396 55.000 0.00 0.00 0.00 3.71
2292 2904 5.771666 TCTCGTCTTCTCCTTTTTAGTGGTA 59.228 40.000 0.00 0.00 0.00 3.25
2306 2918 9.268268 CTTTTTAGTGGTATAACTGTCACTTGA 57.732 33.333 4.68 0.00 40.45 3.02
2324 2936 1.768684 GAAGACAGGTGAGTGGCCCA 61.769 60.000 0.00 0.00 0.00 5.36
2342 2954 1.086696 CACCATCCGCACCTACAAAG 58.913 55.000 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.689813 TCTCAAAGCCCTGTTACACGA 59.310 47.619 0.00 0.00 0.00 4.35
1 2 2.069273 CTCTCAAAGCCCTGTTACACG 58.931 52.381 0.00 0.00 0.00 4.49
2 3 2.038557 TCCTCTCAAAGCCCTGTTACAC 59.961 50.000 0.00 0.00 0.00 2.90
9 10 1.661463 TGACATCCTCTCAAAGCCCT 58.339 50.000 0.00 0.00 0.00 5.19
33 34 1.466856 TACGCCGAGTGGTCACTAAT 58.533 50.000 3.35 0.00 42.66 1.73
49 50 7.228108 TGGTCTCTACATAGGTTCAGTAATACG 59.772 40.741 0.00 0.00 0.00 3.06
71 72 2.609459 CGCTACCAAAGACATGATGGTC 59.391 50.000 16.45 6.83 43.90 4.02
76 77 4.213270 CAGAAAACGCTACCAAAGACATGA 59.787 41.667 0.00 0.00 0.00 3.07
90 91 7.432252 CCAAATAATTATCCTCACAGAAAACGC 59.568 37.037 0.00 0.00 0.00 4.84
96 97 8.493607 TCATCACCAAATAATTATCCTCACAGA 58.506 33.333 0.00 0.00 0.00 3.41
117 118 4.826183 TCCACATTGACAAACACATCATCA 59.174 37.500 0.00 0.00 0.00 3.07
159 160 1.421382 GCAACTGACGCAATGCAAAT 58.579 45.000 5.91 0.00 38.63 2.32
176 177 2.832661 AAGCACCGCAGTTTGGCA 60.833 55.556 0.00 0.00 0.00 4.92
177 178 2.050077 GAAGCACCGCAGTTTGGC 60.050 61.111 0.00 0.00 0.00 4.52
186 187 0.447406 TGCATCAAATCGAAGCACCG 59.553 50.000 0.00 0.00 43.13 4.94
257 258 8.038944 CCCTGAATCAGAAAATCATCACAAATT 58.961 33.333 12.53 0.00 32.44 1.82
258 259 7.553334 CCCTGAATCAGAAAATCATCACAAAT 58.447 34.615 12.53 0.00 32.44 2.32
259 260 6.572898 GCCCTGAATCAGAAAATCATCACAAA 60.573 38.462 12.53 0.00 32.44 2.83
260 261 5.105635 GCCCTGAATCAGAAAATCATCACAA 60.106 40.000 12.53 0.00 32.44 3.33
261 262 4.400251 GCCCTGAATCAGAAAATCATCACA 59.600 41.667 12.53 0.00 32.44 3.58
262 263 4.400251 TGCCCTGAATCAGAAAATCATCAC 59.600 41.667 12.53 0.00 32.44 3.06
263 264 4.602107 TGCCCTGAATCAGAAAATCATCA 58.398 39.130 12.53 0.00 32.44 3.07
264 265 5.587388 TTGCCCTGAATCAGAAAATCATC 57.413 39.130 12.53 0.00 32.44 2.92
265 266 6.555463 ATTTGCCCTGAATCAGAAAATCAT 57.445 33.333 12.53 0.00 32.44 2.45
266 267 6.664816 ACTATTTGCCCTGAATCAGAAAATCA 59.335 34.615 12.53 0.00 32.44 2.57
267 268 6.976925 CACTATTTGCCCTGAATCAGAAAATC 59.023 38.462 12.53 0.00 32.44 2.17
268 269 6.438425 ACACTATTTGCCCTGAATCAGAAAAT 59.562 34.615 12.53 15.26 32.44 1.82
269 270 5.774690 ACACTATTTGCCCTGAATCAGAAAA 59.225 36.000 12.53 9.56 32.44 2.29
270 271 5.324409 ACACTATTTGCCCTGAATCAGAAA 58.676 37.500 12.53 4.99 32.44 2.52
271 272 4.922206 ACACTATTTGCCCTGAATCAGAA 58.078 39.130 12.53 0.00 32.44 3.02
272 273 4.574674 ACACTATTTGCCCTGAATCAGA 57.425 40.909 12.53 0.00 32.44 3.27
273 274 5.065218 GTGTACACTATTTGCCCTGAATCAG 59.935 44.000 18.92 2.68 0.00 2.90
274 275 4.941263 GTGTACACTATTTGCCCTGAATCA 59.059 41.667 18.92 0.00 0.00 2.57
275 276 4.941263 TGTGTACACTATTTGCCCTGAATC 59.059 41.667 25.60 0.00 0.00 2.52
276 277 4.917385 TGTGTACACTATTTGCCCTGAAT 58.083 39.130 25.60 0.00 0.00 2.57
277 278 4.041075 TCTGTGTACACTATTTGCCCTGAA 59.959 41.667 25.60 0.85 0.00 3.02
278 279 3.580895 TCTGTGTACACTATTTGCCCTGA 59.419 43.478 25.60 3.99 0.00 3.86
279 280 3.935203 CTCTGTGTACACTATTTGCCCTG 59.065 47.826 25.60 1.69 0.00 4.45
280 281 3.838317 TCTCTGTGTACACTATTTGCCCT 59.162 43.478 25.60 0.00 0.00 5.19
281 282 4.081642 TCTCTCTGTGTACACTATTTGCCC 60.082 45.833 25.60 0.00 0.00 5.36
282 283 5.073311 TCTCTCTGTGTACACTATTTGCC 57.927 43.478 25.60 0.00 0.00 4.52
283 284 6.813649 TGATTCTCTCTGTGTACACTATTTGC 59.186 38.462 25.60 8.46 0.00 3.68
284 285 8.939201 ATGATTCTCTCTGTGTACACTATTTG 57.061 34.615 25.60 13.42 0.00 2.32
287 288 9.634021 TCTAATGATTCTCTCTGTGTACACTAT 57.366 33.333 25.60 8.42 0.00 2.12
288 289 9.462606 TTCTAATGATTCTCTCTGTGTACACTA 57.537 33.333 25.60 13.44 0.00 2.74
289 290 7.946381 TCTAATGATTCTCTCTGTGTACACT 57.054 36.000 25.60 3.65 0.00 3.55
290 291 8.462811 TCTTCTAATGATTCTCTCTGTGTACAC 58.537 37.037 19.36 19.36 0.00 2.90
291 292 8.462811 GTCTTCTAATGATTCTCTCTGTGTACA 58.537 37.037 0.00 0.00 0.00 2.90
292 293 8.462811 TGTCTTCTAATGATTCTCTCTGTGTAC 58.537 37.037 0.00 0.00 0.00 2.90
293 294 8.581253 TGTCTTCTAATGATTCTCTCTGTGTA 57.419 34.615 0.00 0.00 0.00 2.90
294 295 7.473735 TGTCTTCTAATGATTCTCTCTGTGT 57.526 36.000 0.00 0.00 0.00 3.72
295 296 7.010367 GCTTGTCTTCTAATGATTCTCTCTGTG 59.990 40.741 0.00 0.00 0.00 3.66
296 297 7.041107 GCTTGTCTTCTAATGATTCTCTCTGT 58.959 38.462 0.00 0.00 0.00 3.41
297 298 7.040494 TGCTTGTCTTCTAATGATTCTCTCTG 58.960 38.462 0.00 0.00 0.00 3.35
298 299 7.180322 TGCTTGTCTTCTAATGATTCTCTCT 57.820 36.000 0.00 0.00 0.00 3.10
299 300 7.840342 TTGCTTGTCTTCTAATGATTCTCTC 57.160 36.000 0.00 0.00 0.00 3.20
300 301 7.828223 ACATTGCTTGTCTTCTAATGATTCTCT 59.172 33.333 0.00 0.00 30.89 3.10
301 302 7.909121 CACATTGCTTGTCTTCTAATGATTCTC 59.091 37.037 0.00 0.00 36.00 2.87
302 303 7.392673 ACACATTGCTTGTCTTCTAATGATTCT 59.607 33.333 0.00 0.00 36.00 2.40
303 304 7.533426 ACACATTGCTTGTCTTCTAATGATTC 58.467 34.615 0.00 0.00 36.00 2.52
304 305 7.458409 ACACATTGCTTGTCTTCTAATGATT 57.542 32.000 0.00 0.00 36.00 2.57
305 306 7.826252 ACTACACATTGCTTGTCTTCTAATGAT 59.174 33.333 0.00 0.00 36.00 2.45
306 307 7.161404 ACTACACATTGCTTGTCTTCTAATGA 58.839 34.615 0.00 0.00 36.00 2.57
307 308 7.369803 ACTACACATTGCTTGTCTTCTAATG 57.630 36.000 0.00 0.00 36.00 1.90
308 309 7.661437 TCAACTACACATTGCTTGTCTTCTAAT 59.339 33.333 0.00 0.00 36.00 1.73
309 310 6.989759 TCAACTACACATTGCTTGTCTTCTAA 59.010 34.615 0.00 0.00 36.00 2.10
310 311 6.423905 GTCAACTACACATTGCTTGTCTTCTA 59.576 38.462 0.00 0.00 36.00 2.10
311 312 5.237344 GTCAACTACACATTGCTTGTCTTCT 59.763 40.000 0.00 0.00 36.00 2.85
312 313 5.237344 AGTCAACTACACATTGCTTGTCTTC 59.763 40.000 0.00 0.00 36.00 2.87
313 314 5.008019 CAGTCAACTACACATTGCTTGTCTT 59.992 40.000 0.00 0.00 36.00 3.01
314 315 4.512944 CAGTCAACTACACATTGCTTGTCT 59.487 41.667 0.00 0.00 36.00 3.41
315 316 4.273480 ACAGTCAACTACACATTGCTTGTC 59.727 41.667 0.00 0.00 36.00 3.18
316 317 4.199310 ACAGTCAACTACACATTGCTTGT 58.801 39.130 0.00 0.00 39.91 3.16
317 318 4.818534 ACAGTCAACTACACATTGCTTG 57.181 40.909 0.00 0.00 0.00 4.01
318 319 5.356751 TGAAACAGTCAACTACACATTGCTT 59.643 36.000 0.00 0.00 31.51 3.91
319 320 4.881273 TGAAACAGTCAACTACACATTGCT 59.119 37.500 0.00 0.00 31.51 3.91
320 321 5.168526 TGAAACAGTCAACTACACATTGC 57.831 39.130 0.00 0.00 31.51 3.56
321 322 5.207768 GCTGAAACAGTCAACTACACATTG 58.792 41.667 0.00 0.00 35.22 2.82
322 323 4.275936 GGCTGAAACAGTCAACTACACATT 59.724 41.667 0.00 0.00 35.96 2.71
323 324 3.815401 GGCTGAAACAGTCAACTACACAT 59.185 43.478 0.00 0.00 35.96 3.21
324 325 3.202906 GGCTGAAACAGTCAACTACACA 58.797 45.455 0.00 0.00 35.96 3.72
325 326 3.202906 TGGCTGAAACAGTCAACTACAC 58.797 45.455 3.53 0.00 43.43 2.90
326 327 3.133901 TCTGGCTGAAACAGTCAACTACA 59.866 43.478 7.43 0.00 45.72 2.74
327 328 3.728845 TCTGGCTGAAACAGTCAACTAC 58.271 45.455 7.43 0.00 45.72 2.73
328 329 4.415881 TTCTGGCTGAAACAGTCAACTA 57.584 40.909 4.17 0.00 45.72 2.24
329 330 3.281727 TTCTGGCTGAAACAGTCAACT 57.718 42.857 4.17 0.00 45.72 3.16
330 331 4.370364 TTTTCTGGCTGAAACAGTCAAC 57.630 40.909 17.67 0.00 45.72 3.18
331 332 5.596836 ATTTTTCTGGCTGAAACAGTCAA 57.403 34.783 17.67 10.34 45.72 3.18
332 333 6.899393 ATATTTTTCTGGCTGAAACAGTCA 57.101 33.333 17.67 5.94 44.22 3.41
333 334 6.524586 CGAATATTTTTCTGGCTGAAACAGTC 59.475 38.462 17.67 13.18 43.55 3.51
334 335 6.016276 ACGAATATTTTTCTGGCTGAAACAGT 60.016 34.615 17.67 10.00 43.55 3.55
335 336 6.381801 ACGAATATTTTTCTGGCTGAAACAG 58.618 36.000 17.67 3.98 43.55 3.16
336 337 6.325919 ACGAATATTTTTCTGGCTGAAACA 57.674 33.333 17.67 12.70 43.55 2.83
337 338 8.736751 TTTACGAATATTTTTCTGGCTGAAAC 57.263 30.769 17.67 6.06 43.55 2.78
338 339 9.751542 TTTTTACGAATATTTTTCTGGCTGAAA 57.248 25.926 14.58 14.58 42.33 2.69
375 376 7.510428 ACGCATTTTAATTCTTGCAGTTATG 57.490 32.000 0.00 0.00 34.80 1.90
376 377 6.468956 CGACGCATTTTAATTCTTGCAGTTAT 59.531 34.615 0.00 0.00 34.80 1.89
377 378 5.792962 CGACGCATTTTAATTCTTGCAGTTA 59.207 36.000 0.00 0.00 34.80 2.24
378 379 4.616802 CGACGCATTTTAATTCTTGCAGTT 59.383 37.500 0.00 0.00 34.80 3.16
379 380 4.083537 TCGACGCATTTTAATTCTTGCAGT 60.084 37.500 0.00 0.00 34.80 4.40
380 381 4.402583 TCGACGCATTTTAATTCTTGCAG 58.597 39.130 0.00 0.00 34.80 4.41
381 382 4.411993 TCGACGCATTTTAATTCTTGCA 57.588 36.364 0.00 0.00 34.80 4.08
382 383 4.262976 CCTTCGACGCATTTTAATTCTTGC 59.737 41.667 0.00 0.00 0.00 4.01
383 384 4.262976 GCCTTCGACGCATTTTAATTCTTG 59.737 41.667 0.00 0.00 0.00 3.02
384 385 4.412207 GCCTTCGACGCATTTTAATTCTT 58.588 39.130 0.00 0.00 0.00 2.52
385 386 3.485216 CGCCTTCGACGCATTTTAATTCT 60.485 43.478 4.67 0.00 38.10 2.40
386 387 2.776225 CGCCTTCGACGCATTTTAATTC 59.224 45.455 4.67 0.00 38.10 2.17
387 388 2.477189 CCGCCTTCGACGCATTTTAATT 60.477 45.455 4.67 0.00 38.10 1.40
388 389 1.063469 CCGCCTTCGACGCATTTTAAT 59.937 47.619 4.67 0.00 38.10 1.40
389 390 0.444651 CCGCCTTCGACGCATTTTAA 59.555 50.000 4.67 0.00 38.10 1.52
390 391 0.390078 TCCGCCTTCGACGCATTTTA 60.390 50.000 4.67 0.00 38.10 1.52
391 392 1.024579 ATCCGCCTTCGACGCATTTT 61.025 50.000 4.67 0.00 38.10 1.82
392 393 0.179094 TATCCGCCTTCGACGCATTT 60.179 50.000 4.67 0.00 38.10 2.32
393 394 0.179094 TTATCCGCCTTCGACGCATT 60.179 50.000 4.67 0.00 38.10 3.56
394 395 0.033504 ATTATCCGCCTTCGACGCAT 59.966 50.000 4.67 0.00 38.10 4.73
395 396 0.179094 AATTATCCGCCTTCGACGCA 60.179 50.000 4.67 0.00 38.10 5.24
396 397 0.935196 AAATTATCCGCCTTCGACGC 59.065 50.000 0.00 0.00 38.10 5.19
397 398 1.189446 CGAAATTATCCGCCTTCGACG 59.811 52.381 0.00 0.00 42.44 5.12
398 399 2.199236 ACGAAATTATCCGCCTTCGAC 58.801 47.619 9.76 0.00 42.44 4.20
399 400 2.589798 ACGAAATTATCCGCCTTCGA 57.410 45.000 9.76 0.00 42.44 3.71
400 401 4.782252 TTTACGAAATTATCCGCCTTCG 57.218 40.909 0.00 1.81 44.69 3.79
401 402 7.190871 TCAAATTTACGAAATTATCCGCCTTC 58.809 34.615 0.00 0.00 40.05 3.46
402 403 7.090953 TCAAATTTACGAAATTATCCGCCTT 57.909 32.000 0.00 0.00 40.05 4.35
403 404 6.687081 TCAAATTTACGAAATTATCCGCCT 57.313 33.333 0.00 0.00 40.05 5.52
404 405 9.453325 TTTATCAAATTTACGAAATTATCCGCC 57.547 29.630 0.00 0.00 40.05 6.13
424 425 8.609176 GCATCGTCTTACTTTACCATTTTATCA 58.391 33.333 0.00 0.00 0.00 2.15
425 426 7.792508 CGCATCGTCTTACTTTACCATTTTATC 59.207 37.037 0.00 0.00 0.00 1.75
426 427 7.279313 ACGCATCGTCTTACTTTACCATTTTAT 59.721 33.333 0.00 0.00 33.69 1.40
427 428 6.591062 ACGCATCGTCTTACTTTACCATTTTA 59.409 34.615 0.00 0.00 33.69 1.52
428 429 5.410439 ACGCATCGTCTTACTTTACCATTTT 59.590 36.000 0.00 0.00 33.69 1.82
429 430 4.933400 ACGCATCGTCTTACTTTACCATTT 59.067 37.500 0.00 0.00 33.69 2.32
430 431 4.328983 CACGCATCGTCTTACTTTACCATT 59.671 41.667 0.00 0.00 38.32 3.16
431 432 3.863424 CACGCATCGTCTTACTTTACCAT 59.137 43.478 0.00 0.00 38.32 3.55
432 433 3.247442 CACGCATCGTCTTACTTTACCA 58.753 45.455 0.00 0.00 38.32 3.25
433 434 2.601763 CCACGCATCGTCTTACTTTACC 59.398 50.000 0.00 0.00 38.32 2.85
434 435 2.601763 CCCACGCATCGTCTTACTTTAC 59.398 50.000 0.00 0.00 38.32 2.01
435 436 2.883574 CCCACGCATCGTCTTACTTTA 58.116 47.619 0.00 0.00 38.32 1.85
436 437 1.722011 CCCACGCATCGTCTTACTTT 58.278 50.000 0.00 0.00 38.32 2.66
437 438 0.739813 GCCCACGCATCGTCTTACTT 60.740 55.000 0.00 0.00 38.32 2.24
438 439 1.153628 GCCCACGCATCGTCTTACT 60.154 57.895 0.00 0.00 38.32 2.24
439 440 0.101759 TAGCCCACGCATCGTCTTAC 59.898 55.000 0.00 0.00 38.32 2.34
440 441 1.000607 GATAGCCCACGCATCGTCTTA 60.001 52.381 0.00 0.00 38.32 2.10
441 442 0.249489 GATAGCCCACGCATCGTCTT 60.249 55.000 0.00 0.00 38.32 3.01
442 443 1.364171 GATAGCCCACGCATCGTCT 59.636 57.895 0.00 0.00 38.32 4.18
443 444 0.319900 ATGATAGCCCACGCATCGTC 60.320 55.000 0.00 0.00 38.32 4.20
444 445 0.601046 CATGATAGCCCACGCATCGT 60.601 55.000 0.00 0.00 42.36 3.73
445 446 1.293963 CCATGATAGCCCACGCATCG 61.294 60.000 0.00 0.00 37.52 3.84
446 447 0.957395 CCCATGATAGCCCACGCATC 60.957 60.000 0.00 0.00 37.52 3.91
447 448 1.073722 CCCATGATAGCCCACGCAT 59.926 57.895 0.00 0.00 37.52 4.73
448 449 1.920734 AACCCATGATAGCCCACGCA 61.921 55.000 0.00 0.00 37.52 5.24
449 450 0.751643 AAACCCATGATAGCCCACGC 60.752 55.000 0.00 0.00 0.00 5.34
450 451 1.024271 CAAACCCATGATAGCCCACG 58.976 55.000 0.00 0.00 0.00 4.94
451 452 2.301346 CTCAAACCCATGATAGCCCAC 58.699 52.381 0.00 0.00 0.00 4.61
452 453 1.410083 GCTCAAACCCATGATAGCCCA 60.410 52.381 0.00 0.00 0.00 5.36
453 454 1.322442 GCTCAAACCCATGATAGCCC 58.678 55.000 0.00 0.00 0.00 5.19
454 455 2.057137 TGCTCAAACCCATGATAGCC 57.943 50.000 0.00 0.00 0.00 3.93
455 456 4.660789 AAATGCTCAAACCCATGATAGC 57.339 40.909 0.00 0.00 0.00 2.97
456 457 6.127535 ACTGAAAATGCTCAAACCCATGATAG 60.128 38.462 0.00 0.00 0.00 2.08
457 458 5.716228 ACTGAAAATGCTCAAACCCATGATA 59.284 36.000 0.00 0.00 0.00 2.15
458 459 4.529377 ACTGAAAATGCTCAAACCCATGAT 59.471 37.500 0.00 0.00 0.00 2.45
459 460 3.896888 ACTGAAAATGCTCAAACCCATGA 59.103 39.130 0.00 0.00 0.00 3.07
460 461 3.991773 CACTGAAAATGCTCAAACCCATG 59.008 43.478 0.00 0.00 0.00 3.66
461 462 3.007182 CCACTGAAAATGCTCAAACCCAT 59.993 43.478 0.00 0.00 0.00 4.00
462 463 2.364970 CCACTGAAAATGCTCAAACCCA 59.635 45.455 0.00 0.00 0.00 4.51
463 464 2.289010 CCCACTGAAAATGCTCAAACCC 60.289 50.000 0.00 0.00 0.00 4.11
464 465 2.867647 GCCCACTGAAAATGCTCAAACC 60.868 50.000 0.00 0.00 0.00 3.27
465 466 2.036346 AGCCCACTGAAAATGCTCAAAC 59.964 45.455 0.00 0.00 0.00 2.93
466 467 2.318908 AGCCCACTGAAAATGCTCAAA 58.681 42.857 0.00 0.00 0.00 2.69
467 468 1.999648 AGCCCACTGAAAATGCTCAA 58.000 45.000 0.00 0.00 0.00 3.02
468 469 3.751767 AGCCCACTGAAAATGCTCA 57.248 47.368 0.00 0.00 0.00 4.26
484 485 1.181098 TTCCAGGCAAAGGCTTCAGC 61.181 55.000 14.21 14.21 40.87 4.26
485 486 0.600057 GTTCCAGGCAAAGGCTTCAG 59.400 55.000 0.00 0.00 40.87 3.02
486 487 1.172180 CGTTCCAGGCAAAGGCTTCA 61.172 55.000 0.00 0.00 40.87 3.02
487 488 0.889186 TCGTTCCAGGCAAAGGCTTC 60.889 55.000 0.00 0.00 40.87 3.86
488 489 0.467290 TTCGTTCCAGGCAAAGGCTT 60.467 50.000 0.00 0.00 40.87 4.35
489 490 1.150536 TTCGTTCCAGGCAAAGGCT 59.849 52.632 0.00 0.00 40.87 4.58
490 491 1.285950 GTTCGTTCCAGGCAAAGGC 59.714 57.895 0.00 0.00 40.13 4.35
491 492 1.852067 CGGTTCGTTCCAGGCAAAGG 61.852 60.000 0.00 0.00 0.00 3.11
492 493 0.882927 TCGGTTCGTTCCAGGCAAAG 60.883 55.000 0.00 0.00 0.00 2.77
493 494 0.882927 CTCGGTTCGTTCCAGGCAAA 60.883 55.000 0.00 0.00 0.00 3.68
494 495 1.301401 CTCGGTTCGTTCCAGGCAA 60.301 57.895 0.00 0.00 0.00 4.52
495 496 2.342279 CTCGGTTCGTTCCAGGCA 59.658 61.111 0.00 0.00 0.00 4.75
496 497 2.240162 ATCCTCGGTTCGTTCCAGGC 62.240 60.000 9.90 0.00 0.00 4.85
497 498 0.460284 CATCCTCGGTTCGTTCCAGG 60.460 60.000 9.08 9.08 0.00 4.45
498 499 0.530744 TCATCCTCGGTTCGTTCCAG 59.469 55.000 0.00 0.00 0.00 3.86
499 500 0.970640 TTCATCCTCGGTTCGTTCCA 59.029 50.000 0.00 0.00 0.00 3.53
500 501 1.203994 TCTTCATCCTCGGTTCGTTCC 59.796 52.381 0.00 0.00 0.00 3.62
501 502 2.260481 GTCTTCATCCTCGGTTCGTTC 58.740 52.381 0.00 0.00 0.00 3.95
502 503 1.402456 CGTCTTCATCCTCGGTTCGTT 60.402 52.381 0.00 0.00 0.00 3.85
503 504 0.170561 CGTCTTCATCCTCGGTTCGT 59.829 55.000 0.00 0.00 0.00 3.85
504 505 0.450583 TCGTCTTCATCCTCGGTTCG 59.549 55.000 0.00 0.00 0.00 3.95
505 506 2.531206 CTTCGTCTTCATCCTCGGTTC 58.469 52.381 0.00 0.00 0.00 3.62
506 507 1.404315 GCTTCGTCTTCATCCTCGGTT 60.404 52.381 0.00 0.00 0.00 4.44
507 508 0.173708 GCTTCGTCTTCATCCTCGGT 59.826 55.000 0.00 0.00 0.00 4.69
508 509 0.528684 GGCTTCGTCTTCATCCTCGG 60.529 60.000 0.00 0.00 0.00 4.63
509 510 0.173481 TGGCTTCGTCTTCATCCTCG 59.827 55.000 0.00 0.00 0.00 4.63
510 511 2.208431 CATGGCTTCGTCTTCATCCTC 58.792 52.381 0.00 0.00 0.00 3.71
511 512 1.556911 ACATGGCTTCGTCTTCATCCT 59.443 47.619 0.00 0.00 0.00 3.24
512 513 1.936547 GACATGGCTTCGTCTTCATCC 59.063 52.381 0.00 0.00 0.00 3.51
513 514 1.590238 CGACATGGCTTCGTCTTCATC 59.410 52.381 0.00 0.00 0.00 2.92
514 515 1.204704 TCGACATGGCTTCGTCTTCAT 59.795 47.619 0.00 0.00 37.73 2.57
515 516 0.601057 TCGACATGGCTTCGTCTTCA 59.399 50.000 0.00 0.00 37.73 3.02
516 517 1.390463 GTTCGACATGGCTTCGTCTTC 59.610 52.381 0.00 0.00 37.73 2.87
517 518 1.000955 AGTTCGACATGGCTTCGTCTT 59.999 47.619 0.00 0.00 37.73 3.01
518 519 0.603569 AGTTCGACATGGCTTCGTCT 59.396 50.000 0.00 0.00 37.73 4.18
519 520 1.126846 CAAGTTCGACATGGCTTCGTC 59.873 52.381 0.00 0.00 37.73 4.20
520 521 1.148310 CAAGTTCGACATGGCTTCGT 58.852 50.000 0.00 0.00 37.73 3.85
521 522 1.148310 ACAAGTTCGACATGGCTTCG 58.852 50.000 0.00 0.00 37.85 3.79
522 523 3.300009 CAAACAAGTTCGACATGGCTTC 58.700 45.455 0.00 0.00 0.00 3.86
523 524 2.034558 CCAAACAAGTTCGACATGGCTT 59.965 45.455 0.00 0.00 0.00 4.35
524 525 1.608590 CCAAACAAGTTCGACATGGCT 59.391 47.619 0.00 0.00 0.00 4.75
525 526 1.335872 CCCAAACAAGTTCGACATGGC 60.336 52.381 0.00 0.00 0.00 4.40
526 527 1.335872 GCCCAAACAAGTTCGACATGG 60.336 52.381 0.00 0.00 0.00 3.66
527 528 1.336440 TGCCCAAACAAGTTCGACATG 59.664 47.619 0.00 0.00 0.00 3.21
528 529 1.336755 GTGCCCAAACAAGTTCGACAT 59.663 47.619 0.00 0.00 0.00 3.06
529 530 0.736053 GTGCCCAAACAAGTTCGACA 59.264 50.000 0.00 0.00 0.00 4.35
530 531 0.316689 CGTGCCCAAACAAGTTCGAC 60.317 55.000 0.00 0.00 0.00 4.20
531 532 2.018544 CGTGCCCAAACAAGTTCGA 58.981 52.632 0.00 0.00 0.00 3.71
532 533 1.657181 GCGTGCCCAAACAAGTTCG 60.657 57.895 0.00 0.00 0.00 3.95
533 534 0.594796 CAGCGTGCCCAAACAAGTTC 60.595 55.000 0.00 0.00 0.00 3.01
534 535 1.437160 CAGCGTGCCCAAACAAGTT 59.563 52.632 0.00 0.00 0.00 2.66
535 536 3.119193 CAGCGTGCCCAAACAAGT 58.881 55.556 0.00 0.00 0.00 3.16
536 537 2.355009 GCAGCGTGCCCAAACAAG 60.355 61.111 0.00 0.00 37.42 3.16
537 538 4.263209 CGCAGCGTGCCCAAACAA 62.263 61.111 6.65 0.00 41.12 2.83
550 551 4.519437 TCTCCATCGCAGCCGCAG 62.519 66.667 0.00 0.00 38.40 5.18
551 552 4.519437 CTCTCCATCGCAGCCGCA 62.519 66.667 0.00 0.00 38.40 5.69
566 567 6.326375 CGTGTATTTATAGGAGAGATGGCTC 58.674 44.000 0.00 0.00 41.62 4.70
567 568 5.186021 CCGTGTATTTATAGGAGAGATGGCT 59.814 44.000 0.00 0.00 0.00 4.75
568 569 5.411781 CCGTGTATTTATAGGAGAGATGGC 58.588 45.833 0.00 0.00 0.00 4.40
569 570 5.411781 GCCGTGTATTTATAGGAGAGATGG 58.588 45.833 0.00 0.00 0.00 3.51
570 571 5.047306 TGGCCGTGTATTTATAGGAGAGATG 60.047 44.000 0.00 0.00 0.00 2.90
571 572 5.084519 TGGCCGTGTATTTATAGGAGAGAT 58.915 41.667 0.00 0.00 0.00 2.75
572 573 4.476297 TGGCCGTGTATTTATAGGAGAGA 58.524 43.478 0.00 0.00 0.00 3.10
573 574 4.523173 TCTGGCCGTGTATTTATAGGAGAG 59.477 45.833 0.00 0.00 0.00 3.20
574 575 4.280174 GTCTGGCCGTGTATTTATAGGAGA 59.720 45.833 0.00 0.00 0.00 3.71
575 576 4.557205 GTCTGGCCGTGTATTTATAGGAG 58.443 47.826 0.00 0.00 0.00 3.69
576 577 3.322828 GGTCTGGCCGTGTATTTATAGGA 59.677 47.826 0.00 0.00 0.00 2.94
577 578 3.070446 TGGTCTGGCCGTGTATTTATAGG 59.930 47.826 0.00 0.00 41.21 2.57
578 579 4.330944 TGGTCTGGCCGTGTATTTATAG 57.669 45.455 0.00 0.00 41.21 1.31
579 580 4.443739 CCTTGGTCTGGCCGTGTATTTATA 60.444 45.833 0.00 0.00 41.21 0.98
580 581 3.541632 CTTGGTCTGGCCGTGTATTTAT 58.458 45.455 0.00 0.00 41.21 1.40
581 582 2.355310 CCTTGGTCTGGCCGTGTATTTA 60.355 50.000 0.00 0.00 41.21 1.40
582 583 1.613255 CCTTGGTCTGGCCGTGTATTT 60.613 52.381 0.00 0.00 41.21 1.40
583 584 0.035439 CCTTGGTCTGGCCGTGTATT 60.035 55.000 0.00 0.00 41.21 1.89
584 585 1.602237 CCTTGGTCTGGCCGTGTAT 59.398 57.895 0.00 0.00 41.21 2.29
585 586 3.065306 CCTTGGTCTGGCCGTGTA 58.935 61.111 0.00 0.00 41.21 2.90
586 587 4.643387 GCCTTGGTCTGGCCGTGT 62.643 66.667 0.00 0.00 44.32 4.49
592 593 3.365265 GCCGTTGCCTTGGTCTGG 61.365 66.667 0.00 0.00 0.00 3.86
593 594 2.133742 CTTGCCGTTGCCTTGGTCTG 62.134 60.000 0.00 0.00 36.33 3.51
594 595 1.898574 CTTGCCGTTGCCTTGGTCT 60.899 57.895 0.00 0.00 36.33 3.85
595 596 1.244019 ATCTTGCCGTTGCCTTGGTC 61.244 55.000 0.00 0.00 36.33 4.02
596 597 1.228552 ATCTTGCCGTTGCCTTGGT 60.229 52.632 0.00 0.00 36.33 3.67
597 598 1.508088 GATCTTGCCGTTGCCTTGG 59.492 57.895 0.00 0.00 36.33 3.61
598 599 0.962356 AGGATCTTGCCGTTGCCTTG 60.962 55.000 0.00 0.00 36.33 3.61
599 600 0.678048 GAGGATCTTGCCGTTGCCTT 60.678 55.000 0.00 0.00 36.33 4.35
600 601 1.078143 GAGGATCTTGCCGTTGCCT 60.078 57.895 0.00 0.00 36.33 4.75
601 602 0.960364 TTGAGGATCTTGCCGTTGCC 60.960 55.000 0.00 0.00 33.57 4.52
602 603 0.169009 GTTGAGGATCTTGCCGTTGC 59.831 55.000 0.00 0.00 34.92 4.17
603 604 0.443869 CGTTGAGGATCTTGCCGTTG 59.556 55.000 0.00 0.00 34.92 4.10
604 605 0.034896 ACGTTGAGGATCTTGCCGTT 59.965 50.000 0.00 0.00 34.92 4.44
605 606 0.034896 AACGTTGAGGATCTTGCCGT 59.965 50.000 0.00 0.00 34.92 5.68
606 607 0.721718 GAACGTTGAGGATCTTGCCG 59.278 55.000 5.00 0.00 34.92 5.69
607 608 0.721718 CGAACGTTGAGGATCTTGCC 59.278 55.000 5.00 0.00 34.92 4.52
608 609 1.390463 GTCGAACGTTGAGGATCTTGC 59.610 52.381 5.00 0.00 34.92 4.01
609 610 2.917971 GAGTCGAACGTTGAGGATCTTG 59.082 50.000 5.00 0.00 34.92 3.02
610 611 2.094649 GGAGTCGAACGTTGAGGATCTT 60.095 50.000 5.00 0.00 34.92 2.40
611 612 1.473278 GGAGTCGAACGTTGAGGATCT 59.527 52.381 5.00 1.06 34.92 2.75
631 632 1.635663 GCGACAACAGGGATCCGTTG 61.636 60.000 23.39 23.39 40.75 4.10
637 638 1.302511 GGTGTGCGACAACAGGGAT 60.303 57.895 0.00 0.00 35.45 3.85
645 646 2.279851 CCGTCAAGGTGTGCGACA 60.280 61.111 0.00 0.00 34.51 4.35
716 717 1.512734 CGTACACGAGCCGGTACAC 60.513 63.158 1.90 0.00 43.02 2.90
723 724 3.110178 GGCACACGTACACGAGCC 61.110 66.667 9.04 13.91 43.22 4.70
803 915 3.976468 TTAAGACGCGTCCGTATTTTG 57.024 42.857 34.08 0.00 45.54 2.44
815 927 0.179163 GGTGCAAGCCATTAAGACGC 60.179 55.000 0.00 0.00 0.00 5.19
848 960 2.486966 GGAATCAGTGCCGCTTGC 59.513 61.111 0.00 0.00 41.77 4.01
901 1013 0.036388 ATATAACATGAGGCCCCGCG 60.036 55.000 0.00 0.00 0.00 6.46
928 1040 1.224592 CCACCATGGGAGCCTGTAC 59.775 63.158 18.09 0.00 32.67 2.90
1017 1129 4.394078 TCGCCGACCTCGACGTTG 62.394 66.667 3.37 0.00 45.11 4.10
1050 1162 2.077842 GATGATGGCCCTGCATCCCT 62.078 60.000 15.12 0.00 33.94 4.20
1522 1634 6.767423 AGGTGTTTACTTATTACAAACCACGT 59.233 34.615 0.00 0.00 32.42 4.49
1694 1810 9.829507 CCCAAATTTAAGGCATGATATTTGTAA 57.170 29.630 9.76 0.00 33.40 2.41
1695 1811 8.986991 ACCCAAATTTAAGGCATGATATTTGTA 58.013 29.630 9.76 0.00 33.40 2.41
1696 1812 7.769970 CACCCAAATTTAAGGCATGATATTTGT 59.230 33.333 9.76 0.00 33.40 2.83
1697 1813 7.227116 CCACCCAAATTTAAGGCATGATATTTG 59.773 37.037 0.00 5.04 34.44 2.32
1698 1814 7.281841 CCACCCAAATTTAAGGCATGATATTT 58.718 34.615 0.00 0.00 0.00 1.40
1699 1815 6.183361 CCCACCCAAATTTAAGGCATGATATT 60.183 38.462 0.00 0.00 0.00 1.28
1700 1816 5.307716 CCCACCCAAATTTAAGGCATGATAT 59.692 40.000 0.00 0.00 0.00 1.63
1701 1817 4.653341 CCCACCCAAATTTAAGGCATGATA 59.347 41.667 0.00 0.00 0.00 2.15
1702 1818 3.455543 CCCACCCAAATTTAAGGCATGAT 59.544 43.478 0.00 0.00 0.00 2.45
1703 1819 2.836981 CCCACCCAAATTTAAGGCATGA 59.163 45.455 0.00 0.00 0.00 3.07
1704 1820 2.571202 ACCCACCCAAATTTAAGGCATG 59.429 45.455 6.38 0.00 0.00 4.06
1705 1821 2.914536 ACCCACCCAAATTTAAGGCAT 58.085 42.857 6.38 0.00 0.00 4.40
1706 1822 2.407340 ACCCACCCAAATTTAAGGCA 57.593 45.000 6.38 0.00 0.00 4.75
1707 1823 3.437213 ACTACCCACCCAAATTTAAGGC 58.563 45.455 6.38 0.00 0.00 4.35
1708 1824 4.322424 GCAACTACCCACCCAAATTTAAGG 60.322 45.833 5.14 5.14 0.00 2.69
1709 1825 4.282195 TGCAACTACCCACCCAAATTTAAG 59.718 41.667 0.00 0.00 0.00 1.85
1710 1826 4.039366 GTGCAACTACCCACCCAAATTTAA 59.961 41.667 0.00 0.00 0.00 1.52
1711 1827 3.574826 GTGCAACTACCCACCCAAATTTA 59.425 43.478 0.00 0.00 0.00 1.40
1712 1828 2.367241 GTGCAACTACCCACCCAAATTT 59.633 45.455 0.00 0.00 0.00 1.82
1713 1829 1.967779 GTGCAACTACCCACCCAAATT 59.032 47.619 0.00 0.00 0.00 1.82
1714 1830 1.627864 GTGCAACTACCCACCCAAAT 58.372 50.000 0.00 0.00 0.00 2.32
1715 1831 0.820074 CGTGCAACTACCCACCCAAA 60.820 55.000 0.00 0.00 31.75 3.28
1716 1832 1.228003 CGTGCAACTACCCACCCAA 60.228 57.895 0.00 0.00 31.75 4.12
1717 1833 2.428187 CGTGCAACTACCCACCCA 59.572 61.111 0.00 0.00 31.75 4.51
1718 1834 2.359478 CCGTGCAACTACCCACCC 60.359 66.667 0.00 0.00 31.75 4.61
1719 1835 3.053896 GCCGTGCAACTACCCACC 61.054 66.667 0.00 0.00 31.75 4.61
1720 1836 2.032071 AGCCGTGCAACTACCCAC 59.968 61.111 0.00 0.00 31.75 4.61
1721 1837 1.764571 AAGAGCCGTGCAACTACCCA 61.765 55.000 0.00 0.00 31.75 4.51
1722 1838 0.605589 AAAGAGCCGTGCAACTACCC 60.606 55.000 0.00 0.00 31.75 3.69
1723 1839 0.517316 CAAAGAGCCGTGCAACTACC 59.483 55.000 0.00 0.00 31.75 3.18
1724 1840 1.226746 ACAAAGAGCCGTGCAACTAC 58.773 50.000 0.00 0.00 31.75 2.73
1725 1841 2.823924 TACAAAGAGCCGTGCAACTA 57.176 45.000 0.00 0.00 31.75 2.24
1726 1842 1.873591 CTTACAAAGAGCCGTGCAACT 59.126 47.619 0.00 0.00 31.75 3.16
1727 1843 1.871039 TCTTACAAAGAGCCGTGCAAC 59.129 47.619 0.00 0.00 32.71 4.17
1728 1844 1.871039 GTCTTACAAAGAGCCGTGCAA 59.129 47.619 0.00 0.00 38.41 4.08
1729 1845 1.070134 AGTCTTACAAAGAGCCGTGCA 59.930 47.619 0.00 0.00 38.41 4.57
1730 1846 1.797025 AGTCTTACAAAGAGCCGTGC 58.203 50.000 0.00 0.00 38.41 5.34
1731 1847 4.744570 TCATAGTCTTACAAAGAGCCGTG 58.255 43.478 0.00 0.00 38.41 4.94
1732 1848 5.401531 TTCATAGTCTTACAAAGAGCCGT 57.598 39.130 0.00 0.00 38.41 5.68
1733 1849 6.369065 ACTTTTCATAGTCTTACAAAGAGCCG 59.631 38.462 0.00 0.00 38.41 5.52
1734 1850 7.148390 GGACTTTTCATAGTCTTACAAAGAGCC 60.148 40.741 0.00 0.00 43.26 4.70
1735 1851 7.604545 AGGACTTTTCATAGTCTTACAAAGAGC 59.395 37.037 0.00 0.00 43.26 4.09
1736 1852 9.145865 GAGGACTTTTCATAGTCTTACAAAGAG 57.854 37.037 0.00 0.00 43.26 2.85
1737 1853 7.813148 CGAGGACTTTTCATAGTCTTACAAAGA 59.187 37.037 0.00 0.00 43.26 2.52
1738 1854 7.813148 TCGAGGACTTTTCATAGTCTTACAAAG 59.187 37.037 0.00 0.00 43.26 2.77
1739 1855 7.663827 TCGAGGACTTTTCATAGTCTTACAAA 58.336 34.615 0.00 0.00 43.26 2.83
1744 1860 5.187967 ACCATCGAGGACTTTTCATAGTCTT 59.812 40.000 0.00 0.00 43.26 3.01
1754 1870 1.299976 GCCCACCATCGAGGACTTT 59.700 57.895 0.00 0.00 41.22 2.66
1780 1896 4.101448 GGAGCCAGGGACGCACAT 62.101 66.667 0.00 0.00 0.00 3.21
1806 1922 1.196012 GATGAAGAGGAGAACCCCGT 58.804 55.000 0.00 0.00 36.73 5.28
1837 1953 0.249155 TTTCTCGCGACGTTGTTCCT 60.249 50.000 3.71 0.00 0.00 3.36
1884 2017 2.586792 GAAGCGAGGCCATGGTCT 59.413 61.111 21.57 21.57 0.00 3.85
1889 2500 2.517875 GCATGGAAGCGAGGCCAT 60.518 61.111 5.01 0.00 45.47 4.40
1995 2606 4.481368 TCACCTATGCATTACGGACTTT 57.519 40.909 3.54 0.00 0.00 2.66
2001 2612 8.082852 AGAAGTTAGTATCACCTATGCATTACG 58.917 37.037 3.54 0.00 0.00 3.18
2068 2679 4.895668 AGTCCACCATTGCATGAAATTT 57.104 36.364 0.00 0.00 0.00 1.82
2069 2680 4.529377 AGAAGTCCACCATTGCATGAAATT 59.471 37.500 0.00 0.00 0.00 1.82
2070 2681 4.091549 AGAAGTCCACCATTGCATGAAAT 58.908 39.130 0.00 0.00 0.00 2.17
2095 2707 7.586300 CGTGAACCTAGACAAAACACTTAAATG 59.414 37.037 0.00 0.00 0.00 2.32
2186 2798 5.588246 TGCCACATAAGCGAAAAATCTGATA 59.412 36.000 0.00 0.00 0.00 2.15
2199 2811 0.665298 GCTAAGGCTGCCACATAAGC 59.335 55.000 22.65 16.61 38.76 3.09
2204 2816 0.961857 CATGTGCTAAGGCTGCCACA 60.962 55.000 22.65 16.05 39.59 4.17
2221 2833 5.824624 CCTCACAATGCTTCACCTTATACAT 59.175 40.000 0.00 0.00 0.00 2.29
2232 2844 0.967380 CCCACCCCTCACAATGCTTC 60.967 60.000 0.00 0.00 0.00 3.86
2233 2845 1.077265 CCCACCCCTCACAATGCTT 59.923 57.895 0.00 0.00 0.00 3.91
2236 2848 2.751436 CGCCCACCCCTCACAATG 60.751 66.667 0.00 0.00 0.00 2.82
2237 2849 4.047125 CCGCCCACCCCTCACAAT 62.047 66.667 0.00 0.00 0.00 2.71
2253 2865 1.452833 GAGAGTTGGCAGCCCATCC 60.453 63.158 9.64 0.00 41.78 3.51
2268 2880 4.587684 ACCACTAAAAAGGAGAAGACGAGA 59.412 41.667 0.00 0.00 0.00 4.04
2271 2883 8.033626 AGTTATACCACTAAAAAGGAGAAGACG 58.966 37.037 0.00 0.00 0.00 4.18
2272 2884 9.152595 CAGTTATACCACTAAAAAGGAGAAGAC 57.847 37.037 0.00 0.00 0.00 3.01
2280 2892 9.268268 TCAAGTGACAGTTATACCACTAAAAAG 57.732 33.333 0.00 0.00 38.75 2.27
2306 2918 1.770110 TGGGCCACTCACCTGTCTT 60.770 57.895 0.00 0.00 0.00 3.01
2324 2936 0.035439 CCTTTGTAGGTGCGGATGGT 60.035 55.000 0.00 0.00 36.74 3.55
2342 2954 2.834968 GCCCATACCAAGCAGGCC 60.835 66.667 0.00 0.00 43.14 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.