Multiple sequence alignment - TraesCS2A01G170500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G170500 chr2A 100.000 5057 0 0 1 5057 125625521 125620465 0.000000e+00 9339.0
1 TraesCS2A01G170500 chr2A 76.166 193 31 7 4761 4943 593480667 593480854 2.510000e-13 87.9
2 TraesCS2A01G170500 chr2B 91.940 2618 166 26 2169 4766 174794823 174792231 0.000000e+00 3624.0
3 TraesCS2A01G170500 chr2B 91.482 1667 106 21 174 1812 174798135 174796477 0.000000e+00 2259.0
4 TraesCS2A01G170500 chr2B 95.733 375 15 1 1797 2170 174795359 174794985 2.010000e-168 603.0
5 TraesCS2A01G170500 chr2B 90.608 181 7 3 1 177 174798585 174798411 1.090000e-56 231.0
6 TraesCS2A01G170500 chr2D 95.633 1557 43 11 1196 2749 121371328 121369794 0.000000e+00 2475.0
7 TraesCS2A01G170500 chr2D 92.739 606 27 6 1 591 121372769 121372166 0.000000e+00 859.0
8 TraesCS2A01G170500 chr2D 89.275 662 56 8 3943 4600 121366208 121365558 0.000000e+00 815.0
9 TraesCS2A01G170500 chr2D 94.395 446 25 0 2694 3139 121369793 121369348 0.000000e+00 686.0
10 TraesCS2A01G170500 chr2D 84.252 635 55 18 3137 3730 121366902 121366272 1.220000e-160 577.0
11 TraesCS2A01G170500 chr2D 83.704 270 43 1 4787 5056 112308203 112307935 2.340000e-63 254.0
12 TraesCS2A01G170500 chr2D 85.047 214 30 2 4844 5056 89905538 89905326 3.070000e-52 217.0
13 TraesCS2A01G170500 chr1D 86.296 270 35 2 4787 5056 464756951 464756684 4.950000e-75 292.0
14 TraesCS2A01G170500 chr6D 86.638 232 29 2 4826 5056 155247628 155247398 6.500000e-64 255.0
15 TraesCS2A01G170500 chr6A 85.333 225 33 0 4832 5056 442033707 442033931 3.040000e-57 233.0
16 TraesCS2A01G170500 chr7D 87.500 192 22 2 4865 5056 638408304 638408493 2.370000e-53 220.0
17 TraesCS2A01G170500 chr3B 82.186 247 41 3 4810 5056 479918982 479919225 5.130000e-50 209.0
18 TraesCS2A01G170500 chr7B 82.251 231 41 0 4826 5056 5191721 5191951 3.090000e-47 200.0
19 TraesCS2A01G170500 chr5A 84.058 207 32 1 4844 5050 14297268 14297473 1.110000e-46 198.0
20 TraesCS2A01G170500 chr5A 76.166 193 31 7 4761 4943 344329979 344330166 2.510000e-13 87.9
21 TraesCS2A01G170500 chrUn 76.166 193 31 7 4761 4943 302477420 302477233 2.510000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G170500 chr2A 125620465 125625521 5056 True 9339.00 9339 100.00000 1 5057 1 chr2A.!!$R1 5056
1 TraesCS2A01G170500 chr2B 174792231 174798585 6354 True 1679.25 3624 92.44075 1 4766 4 chr2B.!!$R1 4765
2 TraesCS2A01G170500 chr2D 121365558 121372769 7211 True 1082.40 2475 91.25880 1 4600 5 chr2D.!!$R3 4599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 966 1.077501 AACATCCACCCGCATCTGG 60.078 57.895 0.00 0.00 0.00 3.86 F
1107 1429 0.392595 GGGGTGTCTTTGATCCCGAC 60.393 60.000 0.00 0.00 40.72 4.79 F
1119 1441 0.828022 ATCCCGACGAATTACTGCCA 59.172 50.000 0.00 0.00 0.00 4.92 F
3036 5199 0.462759 CATGGGACCTTCGGAAGCTC 60.463 60.000 12.29 8.27 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 2473 0.387929 GGATACCGTTCAGCATCCGA 59.612 55.000 0.00 0.00 0.00 4.55 R
3036 5199 0.243636 GCGGTCCAAATGGTTCCAAG 59.756 55.000 13.50 3.65 36.34 3.61 R
3069 5232 1.144708 TCAGAACTGCCCATTGGAACA 59.855 47.619 3.62 1.11 0.00 3.18 R
4916 9590 0.108019 GTCCGGACCACCCCATATTC 59.892 60.000 24.75 0.00 0.00 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 1.235724 AGGTAAACAAAGCTGGTCGC 58.764 50.000 0.00 0.00 39.57 5.19
89 91 4.211374 GCTGGTCGCGAAATGAATAATAGT 59.789 41.667 12.06 0.00 0.00 2.12
236 527 7.971168 GCACTAGCTGTACTGTATTATCCTATG 59.029 40.741 0.00 0.00 37.91 2.23
281 572 6.296803 AGGAAGATTGTAGAAACCGTTCTTT 58.703 36.000 0.00 0.00 41.55 2.52
362 653 7.201714 CCCTAGTTATCTAAACCGGATAGATCG 60.202 44.444 26.68 15.90 39.96 3.69
394 685 3.766591 AGGGTGTTTTTGTGTTGACATGA 59.233 39.130 0.00 0.00 30.13 3.07
398 689 3.446873 TGTTTTTGTGTTGACATGAGCCT 59.553 39.130 0.00 0.00 30.13 4.58
556 861 2.878429 CGACACTGCGTCTAGGCT 59.122 61.111 0.00 0.00 42.98 4.58
575 880 3.026694 GCTGCCTTCCACTGGAATAAAT 58.973 45.455 11.09 0.00 41.23 1.40
634 939 1.654954 CTCTGCTGCAATGGACTGGC 61.655 60.000 3.02 0.00 0.00 4.85
643 948 1.480212 AATGGACTGGCGTGGAGTGA 61.480 55.000 0.00 0.00 0.00 3.41
661 966 1.077501 AACATCCACCCGCATCTGG 60.078 57.895 0.00 0.00 0.00 3.86
662 967 1.561769 AACATCCACCCGCATCTGGA 61.562 55.000 0.00 0.00 40.92 3.86
680 985 8.411683 GCATCTGGATTGATTTCTTTAATGAGT 58.588 33.333 0.00 0.00 0.00 3.41
705 1010 3.011144 TGAACCCTGCTTCCATTGGATTA 59.989 43.478 6.15 0.00 0.00 1.75
709 1014 3.243975 CCCTGCTTCCATTGGATTATTGC 60.244 47.826 6.15 7.12 0.00 3.56
728 1033 3.501349 TGCTAGAGTTCTGTTCTGGTCT 58.499 45.455 0.00 0.00 0.00 3.85
744 1049 2.028658 TGGTCTCTTGCTGTCATCTGTC 60.029 50.000 0.00 0.00 0.00 3.51
745 1050 2.233431 GGTCTCTTGCTGTCATCTGTCT 59.767 50.000 0.00 0.00 0.00 3.41
750 1055 6.255453 GTCTCTTGCTGTCATCTGTCTAATTC 59.745 42.308 0.00 0.00 0.00 2.17
751 1056 6.041423 TCTTGCTGTCATCTGTCTAATTCA 57.959 37.500 0.00 0.00 0.00 2.57
765 1070 9.618890 TCTGTCTAATTCAAATATTTCTCCCTG 57.381 33.333 0.00 0.00 0.00 4.45
766 1071 8.225603 TGTCTAATTCAAATATTTCTCCCTGC 57.774 34.615 0.00 0.00 0.00 4.85
780 1089 4.473444 TCTCCCTGCAATAATCCAAATCC 58.527 43.478 0.00 0.00 0.00 3.01
784 1093 4.038402 CCCTGCAATAATCCAAATCCAGTC 59.962 45.833 0.00 0.00 0.00 3.51
792 1101 4.996788 ATCCAAATCCAGTCATTTGCTC 57.003 40.909 1.13 0.00 40.89 4.26
812 1121 4.034510 GCTCTGGACTTATGTATTGTGTGC 59.965 45.833 0.00 0.00 0.00 4.57
817 1126 6.000840 TGGACTTATGTATTGTGTGCTGAAA 58.999 36.000 0.00 0.00 0.00 2.69
821 1130 8.560355 ACTTATGTATTGTGTGCTGAAATACA 57.440 30.769 9.23 9.23 45.70 2.29
832 1141 6.851330 GTGTGCTGAAATACAAGTTACAGTTC 59.149 38.462 0.00 0.00 0.00 3.01
833 1142 6.017440 TGTGCTGAAATACAAGTTACAGTTCC 60.017 38.462 0.00 0.00 0.00 3.62
834 1143 5.472137 TGCTGAAATACAAGTTACAGTTCCC 59.528 40.000 0.00 0.00 0.00 3.97
839 1152 8.750298 TGAAATACAAGTTACAGTTCCCAAAAA 58.250 29.630 0.00 0.00 0.00 1.94
858 1171 4.445452 AAAGCATTGTGCCATACTTGAG 57.555 40.909 0.00 0.00 46.52 3.02
861 1174 2.954318 GCATTGTGCCATACTTGAGGAT 59.046 45.455 0.00 0.00 37.42 3.24
877 1190 5.604758 TGAGGATCATACCTGAAACTCTG 57.395 43.478 0.00 0.00 42.56 3.35
896 1213 7.865706 ACTCTGAGTTTGTACAGTTCATTTT 57.134 32.000 4.06 0.00 35.84 1.82
908 1225 8.894731 TGTACAGTTCATTTTGTGCTTTAACTA 58.105 29.630 0.00 0.00 32.15 2.24
911 1228 9.248291 ACAGTTCATTTTGTGCTTTAACTAATG 57.752 29.630 0.00 0.00 0.00 1.90
925 1242 8.482429 GCTTTAACTAATGTATTGCATGCAATC 58.518 33.333 41.17 31.40 44.50 2.67
926 1243 9.740239 CTTTAACTAATGTATTGCATGCAATCT 57.260 29.630 41.17 26.67 44.50 2.40
934 1251 7.864108 TGTATTGCATGCAATCTTAAGTAGT 57.136 32.000 41.17 21.93 44.50 2.73
935 1252 8.956533 TGTATTGCATGCAATCTTAAGTAGTA 57.043 30.769 41.17 21.88 44.50 1.82
990 1308 3.896648 TGATTTCAGTTTTCGGAGCAC 57.103 42.857 0.00 0.00 0.00 4.40
1008 1330 2.221055 GCACGCCTTAATAATGGAGTCG 59.779 50.000 0.00 0.00 34.22 4.18
1023 1345 1.000385 GAGTCGGATCTGCTCATCAGG 60.000 57.143 16.46 0.00 43.06 3.86
1039 1361 3.147595 GGCGGGAGGAAATTGGGC 61.148 66.667 0.00 0.00 0.00 5.36
1042 1364 2.777146 GGGAGGAAATTGGGCCCA 59.223 61.111 24.45 24.45 38.68 5.36
1049 1371 2.158173 AGGAAATTGGGCCCAAAAGAGA 60.158 45.455 40.00 18.51 39.55 3.10
1051 1373 3.264193 GGAAATTGGGCCCAAAAGAGAAT 59.736 43.478 40.00 20.04 39.55 2.40
1074 1396 0.804989 ATTTTCGCAGCAGGTGTAGC 59.195 50.000 0.66 0.00 0.00 3.58
1091 1413 4.929808 GTGTAGCGAGATATTTATGTGGGG 59.070 45.833 0.00 0.00 0.00 4.96
1107 1429 0.392595 GGGGTGTCTTTGATCCCGAC 60.393 60.000 0.00 0.00 40.72 4.79
1116 1438 4.267928 GTCTTTGATCCCGACGAATTACTG 59.732 45.833 0.00 0.00 0.00 2.74
1119 1441 0.828022 ATCCCGACGAATTACTGCCA 59.172 50.000 0.00 0.00 0.00 4.92
1121 1443 1.002201 TCCCGACGAATTACTGCCAAA 59.998 47.619 0.00 0.00 0.00 3.28
1162 1484 2.616376 TCGTGGTTTTGTGAATGGACTG 59.384 45.455 0.00 0.00 0.00 3.51
1174 1496 5.355071 TGTGAATGGACTGATGATTGCTTAC 59.645 40.000 0.00 0.00 0.00 2.34
1177 1499 6.660521 TGAATGGACTGATGATTGCTTACTTT 59.339 34.615 0.00 0.00 0.00 2.66
1183 1505 5.352569 ACTGATGATTGCTTACTTTCCTTCG 59.647 40.000 0.00 0.00 0.00 3.79
1185 1507 6.115446 TGATGATTGCTTACTTTCCTTCGAT 58.885 36.000 0.00 0.00 0.00 3.59
1232 2033 1.529010 CTGTTTGGCCCTGCACTGA 60.529 57.895 0.00 0.00 0.00 3.41
1351 2152 5.303589 CCATCAACAGCAAAGGATATGGAAT 59.696 40.000 0.00 0.00 35.68 3.01
1640 2443 4.003648 GCAGCTGAACATACTGTTTACCT 58.996 43.478 20.43 0.00 41.28 3.08
1641 2444 4.455877 GCAGCTGAACATACTGTTTACCTT 59.544 41.667 20.43 0.00 41.28 3.50
1898 3837 8.307483 TCAAGATCAACAAAAAGGTACAAACAA 58.693 29.630 0.00 0.00 0.00 2.83
2129 4068 1.974265 TTCGGCAATGAACTCAACCA 58.026 45.000 0.00 0.00 0.00 3.67
2137 4076 4.810491 GCAATGAACTCAACCAACAAACAT 59.190 37.500 0.00 0.00 0.00 2.71
2344 4446 4.080299 AGGTTGGGGCTGTTAAAGATAGAG 60.080 45.833 0.00 0.00 0.00 2.43
2371 4473 9.823647 ATATACATGGATTTCATACTTCGATCC 57.176 33.333 0.00 0.00 37.40 3.36
2490 4592 2.002505 AGAGCCCGATGTACTGCTAT 57.997 50.000 0.00 0.00 33.41 2.97
2533 4636 4.184439 TTTTTGGAGGCGGGTTCC 57.816 55.556 0.00 0.00 35.20 3.62
2639 4743 7.024768 GGCTATTGCTAGTCTATTTCTAGTCG 58.975 42.308 0.00 0.00 37.69 4.18
2642 4746 6.452494 TTGCTAGTCTATTTCTAGTCGCTT 57.548 37.500 0.00 0.00 37.69 4.68
2794 4957 4.873827 GCATGTCTTCCATTTACCTTACGA 59.126 41.667 0.00 0.00 0.00 3.43
2851 5014 2.342648 GTGGACAGGACGGTCACC 59.657 66.667 10.76 7.98 39.59 4.02
2964 5127 1.001020 AATGGCCATGGCTTGTCGA 60.001 52.632 34.70 13.20 41.60 4.20
2968 5131 1.212751 GCCATGGCTTGTCGAAACC 59.787 57.895 29.98 0.00 38.26 3.27
2969 5132 1.244019 GCCATGGCTTGTCGAAACCT 61.244 55.000 29.98 0.00 38.26 3.50
2975 5138 1.120437 GCTTGTCGAAACCTTTTGCG 58.880 50.000 0.00 0.00 34.72 4.85
3018 5181 2.106477 TGCCATCGCAATTCTGTACA 57.894 45.000 0.00 0.00 43.74 2.90
3036 5199 0.462759 CATGGGACCTTCGGAAGCTC 60.463 60.000 12.29 8.27 0.00 4.09
3048 5211 2.162681 CGGAAGCTCTTGGAACCATTT 58.837 47.619 0.00 0.00 0.00 2.32
3069 5232 2.827190 CCGCTGCTGATGTGCCAT 60.827 61.111 0.00 0.00 0.00 4.40
3108 5271 2.965716 AAGTGCGCAGGGGATATGGC 62.966 60.000 12.22 0.00 0.00 4.40
3114 5277 0.751643 GCAGGGGATATGGCGTTGTT 60.752 55.000 0.00 0.00 0.00 2.83
3155 7766 1.627297 GGGGAGAGGGCAATCGAAGT 61.627 60.000 0.00 0.00 0.00 3.01
3279 7890 1.056660 AGAGGGTTTTCAAGAGGCGA 58.943 50.000 0.00 0.00 0.00 5.54
3280 7891 1.002544 AGAGGGTTTTCAAGAGGCGAG 59.997 52.381 0.00 0.00 0.00 5.03
3284 7895 1.609320 GGTTTTCAAGAGGCGAGCTCT 60.609 52.381 12.85 0.00 0.00 4.09
3331 7943 4.959723 CCACTTGGTTGGTTTCATTCAAT 58.040 39.130 0.00 0.00 0.00 2.57
3333 7945 5.358922 CACTTGGTTGGTTTCATTCAATGT 58.641 37.500 0.00 0.00 0.00 2.71
3337 7949 8.043710 ACTTGGTTGGTTTCATTCAATGTTTAA 58.956 29.630 0.00 0.00 0.00 1.52
3348 7960 7.586747 TCATTCAATGTTTAACCGTTTCCTAC 58.413 34.615 0.00 0.00 0.00 3.18
3349 7961 6.939132 TTCAATGTTTAACCGTTTCCTACA 57.061 33.333 0.00 0.00 0.00 2.74
3350 7962 6.548441 TCAATGTTTAACCGTTTCCTACAG 57.452 37.500 0.00 0.00 0.00 2.74
3363 7975 5.632347 CGTTTCCTACAGTATATTTAGGCGG 59.368 44.000 0.00 0.00 33.57 6.13
3374 7986 0.895530 TTTAGGCGGTCCTGACTCAG 59.104 55.000 0.00 0.00 44.08 3.35
3375 7987 0.251653 TTAGGCGGTCCTGACTCAGT 60.252 55.000 5.32 0.00 44.08 3.41
3394 8006 3.961414 GTGTTTCCAGGGGCCGGA 61.961 66.667 5.05 0.00 0.00 5.14
3397 8009 2.438795 TTTCCAGGGGCCGGAAAG 59.561 61.111 18.36 0.00 45.43 2.62
3421 8033 1.721926 CGAGCTCGTGGTTTTCTCTTC 59.278 52.381 27.79 0.00 34.11 2.87
3467 8079 1.859080 CCCGTAATACGCTCTTGCTTC 59.141 52.381 7.37 0.00 40.91 3.86
3468 8080 1.517276 CCGTAATACGCTCTTGCTTCG 59.483 52.381 7.37 0.00 40.91 3.79
3469 8081 1.517276 CGTAATACGCTCTTGCTTCGG 59.483 52.381 0.00 0.00 33.65 4.30
3470 8082 1.258197 GTAATACGCTCTTGCTTCGGC 59.742 52.381 0.00 0.00 42.19 5.54
3504 8149 2.289631 ACAAGACAGTGCCGATCAATGA 60.290 45.455 11.00 0.00 42.95 2.57
3566 8218 6.478512 TTGGGTGTTTCAAGCTCTTATTTT 57.521 33.333 0.00 0.00 0.00 1.82
3701 8358 8.270744 AGGAAGATTGTTATTGATAGAACTGCT 58.729 33.333 0.00 0.00 0.00 4.24
3703 8360 7.256756 AGATTGTTATTGATAGAACTGCTGC 57.743 36.000 0.00 0.00 0.00 5.25
3726 8385 9.428097 CTGCTTAAATCTTTTTAGGAAGCAATT 57.572 29.630 7.69 0.00 40.62 2.32
3769 8428 5.104259 AGGTAGTGAGAAATTTAGGGCAG 57.896 43.478 0.00 0.00 0.00 4.85
3775 8434 0.523335 GAAATTTAGGGCAGCACGCG 60.523 55.000 3.53 3.53 43.84 6.01
3794 8453 4.194121 CGCGCTTTATTTTACGACTGATC 58.806 43.478 5.56 0.00 0.00 2.92
3933 8592 5.072055 TGCACATAGCCATATTAACTGCAT 58.928 37.500 0.00 0.00 44.83 3.96
3941 8604 7.730364 AGCCATATTAACTGCATACTAACAC 57.270 36.000 0.00 0.00 0.00 3.32
3953 8616 4.932200 GCATACTAACACAAGTCTCTGCTT 59.068 41.667 0.00 0.00 31.74 3.91
3979 8642 7.728083 TCCTTTCAGGAAAAGAAACCAATATGA 59.272 33.333 0.00 0.00 46.18 2.15
4004 8667 1.620822 AGTGGTGCCATCAAAACCTC 58.379 50.000 0.00 0.00 34.90 3.85
4088 8751 1.289109 CCGACGTGCCCTTACAACTG 61.289 60.000 0.00 0.00 0.00 3.16
4152 8815 3.046870 TGGCAACATGAAACCCGC 58.953 55.556 0.00 0.00 46.17 6.13
4187 8850 2.545952 GGCCTAAAGATCTCGATGCGAA 60.546 50.000 0.00 0.00 34.74 4.70
4209 8872 0.448197 GCTTAAGGCGGCTCAAGTTC 59.552 55.000 21.83 3.89 0.00 3.01
4233 8896 3.295228 ATGCTTCGTGCGCGTGAAC 62.295 57.895 20.50 0.00 46.63 3.18
4282 8945 4.394078 TCGTCGGCCTGTTCGTCG 62.394 66.667 0.00 0.00 39.60 5.12
4482 9145 1.202371 GCGTAGTGGATGGAATCGTGA 60.202 52.381 0.00 0.00 46.86 4.35
4483 9146 2.460918 CGTAGTGGATGGAATCGTGAC 58.539 52.381 0.00 0.00 46.86 3.67
4484 9147 2.099263 CGTAGTGGATGGAATCGTGACT 59.901 50.000 0.00 0.00 46.86 3.41
4485 9148 2.969628 AGTGGATGGAATCGTGACTC 57.030 50.000 0.00 0.00 46.86 3.36
4486 9149 1.135139 AGTGGATGGAATCGTGACTCG 59.865 52.381 0.00 0.00 46.86 4.18
4487 9150 1.135083 GTGGATGGAATCGTGACTCGT 60.135 52.381 0.00 0.00 46.86 4.18
4488 9151 1.135112 TGGATGGAATCGTGACTCGTG 60.135 52.381 0.00 0.00 46.86 4.35
4522 9185 3.010420 GGACTGGAACTAGAAATGTGGC 58.990 50.000 0.00 0.00 0.00 5.01
4524 9187 2.375174 ACTGGAACTAGAAATGTGGCCA 59.625 45.455 0.00 0.00 0.00 5.36
4530 9193 5.453567 AACTAGAAATGTGGCCAGTTTTC 57.546 39.130 23.70 23.70 0.00 2.29
4567 9234 5.068591 TCCTTTTTGAAGTTAAGAACCTGGC 59.931 40.000 0.00 0.00 0.00 4.85
4576 9243 2.262423 AAGAACCTGGCTCAGTGAAC 57.738 50.000 0.00 0.00 0.00 3.18
4604 9271 4.679373 TTGTTTGGTTGGCACATGTTAT 57.321 36.364 0.00 0.00 39.30 1.89
4607 9274 2.897271 TGGTTGGCACATGTTATCCT 57.103 45.000 0.00 0.00 39.30 3.24
4614 9288 6.575684 TTGGCACATGTTATCCTGTGTGGA 62.576 45.833 0.00 0.00 45.02 4.02
4646 9320 4.379499 GCAGTGTTTGGCCTAAGATTGTAC 60.379 45.833 17.55 2.58 0.00 2.90
4687 9361 3.409026 AACTGAAGCTGTTGGAGTAGG 57.591 47.619 0.00 0.00 0.00 3.18
4690 9364 1.002430 TGAAGCTGTTGGAGTAGGCAG 59.998 52.381 0.00 0.00 0.00 4.85
4693 9367 0.321671 GCTGTTGGAGTAGGCAGTGA 59.678 55.000 0.00 0.00 0.00 3.41
4716 9390 6.421377 AACTGCCTTGTTCATTTTGTTTTC 57.579 33.333 0.00 0.00 0.00 2.29
4717 9391 5.733676 ACTGCCTTGTTCATTTTGTTTTCT 58.266 33.333 0.00 0.00 0.00 2.52
4727 9401 4.272991 TCATTTTGTTTTCTTGCATGGTGC 59.727 37.500 0.00 0.00 45.29 5.01
4751 9425 4.018960 AGTTGAAATACTCCTCTGCCATGT 60.019 41.667 0.00 0.00 0.00 3.21
4758 9432 2.840038 ACTCCTCTGCCATGTTGTGATA 59.160 45.455 0.00 0.00 0.00 2.15
4766 9440 3.278574 GCCATGTTGTGATACTTGCCTA 58.721 45.455 0.00 0.00 0.00 3.93
4767 9441 3.694072 GCCATGTTGTGATACTTGCCTAA 59.306 43.478 0.00 0.00 0.00 2.69
4768 9442 4.201950 GCCATGTTGTGATACTTGCCTAAG 60.202 45.833 0.00 0.00 39.86 2.18
4769 9443 5.185454 CCATGTTGTGATACTTGCCTAAGA 58.815 41.667 0.00 0.00 37.36 2.10
4770 9444 5.295292 CCATGTTGTGATACTTGCCTAAGAG 59.705 44.000 0.00 0.00 37.36 2.85
4771 9445 4.253685 TGTTGTGATACTTGCCTAAGAGC 58.746 43.478 0.00 0.00 37.36 4.09
4772 9446 4.253685 GTTGTGATACTTGCCTAAGAGCA 58.746 43.478 0.00 0.00 42.17 4.26
4773 9447 4.760530 TGTGATACTTGCCTAAGAGCAT 57.239 40.909 0.00 0.00 43.64 3.79
4774 9448 4.697514 TGTGATACTTGCCTAAGAGCATC 58.302 43.478 0.00 0.00 43.64 3.91
4786 9460 3.432517 GAGCATCTATAGCCAGGCG 57.567 57.895 5.55 0.00 0.00 5.52
4787 9461 0.739112 GAGCATCTATAGCCAGGCGC 60.739 60.000 5.55 0.00 37.98 6.53
4788 9462 1.743252 GCATCTATAGCCAGGCGCC 60.743 63.158 21.89 21.89 38.78 6.53
4789 9463 1.978473 CATCTATAGCCAGGCGCCT 59.022 57.895 27.08 27.08 38.78 5.52
4790 9464 0.108424 CATCTATAGCCAGGCGCCTC 60.108 60.000 30.29 17.64 38.78 4.70
4791 9465 0.542938 ATCTATAGCCAGGCGCCTCA 60.543 55.000 30.29 12.85 38.78 3.86
4792 9466 0.759060 TCTATAGCCAGGCGCCTCAA 60.759 55.000 30.29 12.82 38.78 3.02
4793 9467 0.106708 CTATAGCCAGGCGCCTCAAA 59.893 55.000 30.29 13.22 38.78 2.69
4794 9468 0.764890 TATAGCCAGGCGCCTCAAAT 59.235 50.000 30.29 19.51 38.78 2.32
4795 9469 0.820891 ATAGCCAGGCGCCTCAAATG 60.821 55.000 30.29 16.60 38.78 2.32
4796 9470 4.503314 GCCAGGCGCCTCAAATGC 62.503 66.667 30.29 19.94 0.00 3.56
4820 9494 2.202797 CGCTCACCCGGATCACTG 60.203 66.667 0.73 0.00 0.00 3.66
4821 9495 2.710902 CGCTCACCCGGATCACTGA 61.711 63.158 0.73 0.00 0.00 3.41
4822 9496 1.153549 GCTCACCCGGATCACTGAC 60.154 63.158 0.73 0.00 0.00 3.51
4823 9497 1.888436 GCTCACCCGGATCACTGACA 61.888 60.000 0.73 0.00 0.00 3.58
4824 9498 0.826715 CTCACCCGGATCACTGACAT 59.173 55.000 0.73 0.00 0.00 3.06
4825 9499 0.536724 TCACCCGGATCACTGACATG 59.463 55.000 0.73 0.00 0.00 3.21
4826 9500 0.250234 CACCCGGATCACTGACATGT 59.750 55.000 0.73 0.00 0.00 3.21
4827 9501 0.537188 ACCCGGATCACTGACATGTC 59.463 55.000 19.27 19.27 0.00 3.06
4828 9502 0.536724 CCCGGATCACTGACATGTCA 59.463 55.000 26.33 26.33 38.06 3.58
4829 9503 1.645034 CCGGATCACTGACATGTCAC 58.355 55.000 24.56 14.00 35.46 3.67
4830 9504 1.271876 CGGATCACTGACATGTCACG 58.728 55.000 24.56 20.00 35.46 4.35
4831 9505 1.135402 CGGATCACTGACATGTCACGA 60.135 52.381 24.56 21.98 35.46 4.35
4832 9506 2.480244 CGGATCACTGACATGTCACGAT 60.480 50.000 25.58 25.58 35.46 3.73
4833 9507 3.525537 GGATCACTGACATGTCACGATT 58.474 45.455 24.56 10.04 35.46 3.34
4834 9508 3.935203 GGATCACTGACATGTCACGATTT 59.065 43.478 24.56 9.87 35.46 2.17
4835 9509 4.393062 GGATCACTGACATGTCACGATTTT 59.607 41.667 24.56 9.21 35.46 1.82
4836 9510 5.106555 GGATCACTGACATGTCACGATTTTT 60.107 40.000 24.56 8.88 35.46 1.94
4855 9529 5.934935 TTTTTGATTTAGACGGACACCTC 57.065 39.130 0.00 0.00 0.00 3.85
4856 9530 4.610605 TTTGATTTAGACGGACACCTCA 57.389 40.909 0.00 0.00 0.00 3.86
4857 9531 4.610605 TTGATTTAGACGGACACCTCAA 57.389 40.909 0.00 0.00 0.00 3.02
4858 9532 4.610605 TGATTTAGACGGACACCTCAAA 57.389 40.909 0.00 0.00 0.00 2.69
4859 9533 5.160607 TGATTTAGACGGACACCTCAAAT 57.839 39.130 0.00 0.00 0.00 2.32
4860 9534 4.935205 TGATTTAGACGGACACCTCAAATG 59.065 41.667 0.00 0.00 0.00 2.32
4861 9535 4.610605 TTTAGACGGACACCTCAAATGA 57.389 40.909 0.00 0.00 0.00 2.57
4862 9536 2.751166 AGACGGACACCTCAAATGAG 57.249 50.000 3.37 3.37 41.71 2.90
4863 9537 1.971357 AGACGGACACCTCAAATGAGT 59.029 47.619 9.43 0.00 40.48 3.41
4864 9538 2.028930 AGACGGACACCTCAAATGAGTC 60.029 50.000 9.43 1.89 40.48 3.36
4865 9539 1.971357 ACGGACACCTCAAATGAGTCT 59.029 47.619 9.43 0.00 40.48 3.24
4866 9540 2.368875 ACGGACACCTCAAATGAGTCTT 59.631 45.455 9.43 0.00 40.48 3.01
4867 9541 3.576982 ACGGACACCTCAAATGAGTCTTA 59.423 43.478 9.43 0.00 40.48 2.10
4868 9542 4.039973 ACGGACACCTCAAATGAGTCTTAA 59.960 41.667 9.43 0.00 40.48 1.85
4869 9543 4.994852 CGGACACCTCAAATGAGTCTTAAA 59.005 41.667 9.43 0.00 40.48 1.52
4870 9544 5.107065 CGGACACCTCAAATGAGTCTTAAAC 60.107 44.000 9.43 0.00 40.48 2.01
4871 9545 5.107065 GGACACCTCAAATGAGTCTTAAACG 60.107 44.000 9.43 0.00 40.48 3.60
4872 9546 4.213482 ACACCTCAAATGAGTCTTAAACGC 59.787 41.667 9.43 0.00 40.48 4.84
4873 9547 4.452455 CACCTCAAATGAGTCTTAAACGCT 59.548 41.667 9.43 0.00 40.48 5.07
4874 9548 4.691216 ACCTCAAATGAGTCTTAAACGCTC 59.309 41.667 9.43 0.00 40.48 5.03
4875 9549 4.201628 CCTCAAATGAGTCTTAAACGCTCG 60.202 45.833 9.43 0.00 40.48 5.03
4876 9550 3.678072 TCAAATGAGTCTTAAACGCTCGG 59.322 43.478 0.00 0.00 32.32 4.63
4877 9551 2.295253 ATGAGTCTTAAACGCTCGGG 57.705 50.000 0.00 0.00 32.32 5.14
4878 9552 0.389426 TGAGTCTTAAACGCTCGGGC 60.389 55.000 0.00 0.00 32.32 6.13
4879 9553 0.108756 GAGTCTTAAACGCTCGGGCT 60.109 55.000 5.36 0.00 36.09 5.19
4880 9554 1.133790 GAGTCTTAAACGCTCGGGCTA 59.866 52.381 5.36 0.00 36.09 3.93
4881 9555 1.547372 AGTCTTAAACGCTCGGGCTAA 59.453 47.619 5.36 0.00 36.09 3.09
4882 9556 1.657594 GTCTTAAACGCTCGGGCTAAC 59.342 52.381 5.36 0.00 36.09 2.34
4883 9557 1.004595 CTTAAACGCTCGGGCTAACC 58.995 55.000 5.36 0.00 36.09 2.85
4893 9567 4.484872 GGCTAACCGGCACCCCTC 62.485 72.222 0.00 0.00 38.25 4.30
4894 9568 3.712907 GCTAACCGGCACCCCTCA 61.713 66.667 0.00 0.00 0.00 3.86
4895 9569 3.043999 GCTAACCGGCACCCCTCAT 62.044 63.158 0.00 0.00 0.00 2.90
4896 9570 1.692173 GCTAACCGGCACCCCTCATA 61.692 60.000 0.00 0.00 0.00 2.15
4897 9571 1.056660 CTAACCGGCACCCCTCATAT 58.943 55.000 0.00 0.00 0.00 1.78
4898 9572 1.002087 CTAACCGGCACCCCTCATATC 59.998 57.143 0.00 0.00 0.00 1.63
4899 9573 1.705997 AACCGGCACCCCTCATATCC 61.706 60.000 0.00 0.00 0.00 2.59
4900 9574 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
4901 9575 1.372683 CGGCACCCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
4902 9576 1.073897 GGCACCCCTCATATCCAGC 59.926 63.158 0.00 0.00 0.00 4.85
4903 9577 1.073897 GCACCCCTCATATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
4904 9578 1.763770 CACCCCTCATATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
4905 9579 1.061905 CACCCCTCATATCCAGCCCA 61.062 60.000 0.00 0.00 0.00 5.36
4906 9580 0.328450 ACCCCTCATATCCAGCCCAA 60.328 55.000 0.00 0.00 0.00 4.12
4907 9581 0.852842 CCCCTCATATCCAGCCCAAA 59.147 55.000 0.00 0.00 0.00 3.28
4908 9582 1.430464 CCCCTCATATCCAGCCCAAAT 59.570 52.381 0.00 0.00 0.00 2.32
4909 9583 2.649312 CCCCTCATATCCAGCCCAAATA 59.351 50.000 0.00 0.00 0.00 1.40
4910 9584 3.270433 CCCCTCATATCCAGCCCAAATAT 59.730 47.826 0.00 0.00 0.00 1.28
4911 9585 4.275810 CCCTCATATCCAGCCCAAATATG 58.724 47.826 0.00 0.00 35.58 1.78
4924 9598 2.760092 CCAAATATGGGGCGAATATGGG 59.240 50.000 0.00 0.00 43.51 4.00
4925 9599 2.760092 CAAATATGGGGCGAATATGGGG 59.240 50.000 0.00 0.00 0.00 4.96
4926 9600 1.681229 ATATGGGGCGAATATGGGGT 58.319 50.000 0.00 0.00 0.00 4.95
4927 9601 0.695924 TATGGGGCGAATATGGGGTG 59.304 55.000 0.00 0.00 0.00 4.61
4928 9602 2.080336 ATGGGGCGAATATGGGGTGG 62.080 60.000 0.00 0.00 0.00 4.61
4929 9603 2.763645 GGGGCGAATATGGGGTGGT 61.764 63.158 0.00 0.00 0.00 4.16
4930 9604 1.228154 GGGCGAATATGGGGTGGTC 60.228 63.158 0.00 0.00 0.00 4.02
4931 9605 1.228154 GGCGAATATGGGGTGGTCC 60.228 63.158 0.00 0.00 0.00 4.46
4932 9606 1.597027 GCGAATATGGGGTGGTCCG 60.597 63.158 0.00 0.00 36.01 4.79
4933 9607 1.070786 CGAATATGGGGTGGTCCGG 59.929 63.158 0.00 0.00 36.01 5.14
4934 9608 1.404479 CGAATATGGGGTGGTCCGGA 61.404 60.000 0.00 0.00 36.01 5.14
4935 9609 0.108019 GAATATGGGGTGGTCCGGAC 59.892 60.000 27.04 27.04 36.01 4.79
4936 9610 0.622154 AATATGGGGTGGTCCGGACA 60.622 55.000 34.40 18.59 36.01 4.02
4937 9611 1.342672 ATATGGGGTGGTCCGGACAC 61.343 60.000 34.40 27.17 38.10 3.67
4961 9635 3.470567 GCGCGTCCGTCTGACAAG 61.471 66.667 8.43 0.00 44.71 3.16
4962 9636 2.254350 CGCGTCCGTCTGACAAGA 59.746 61.111 8.73 0.98 44.71 3.02
4969 9643 2.047179 GTCTGACAAGACCGGCCC 60.047 66.667 0.00 0.00 46.15 5.80
4970 9644 2.525629 TCTGACAAGACCGGCCCA 60.526 61.111 0.00 0.00 0.00 5.36
4971 9645 2.358737 CTGACAAGACCGGCCCAC 60.359 66.667 0.00 0.00 0.00 4.61
4972 9646 3.901797 CTGACAAGACCGGCCCACC 62.902 68.421 0.00 0.00 0.00 4.61
4973 9647 3.948719 GACAAGACCGGCCCACCA 61.949 66.667 0.00 0.00 34.57 4.17
4974 9648 4.265056 ACAAGACCGGCCCACCAC 62.265 66.667 0.00 0.00 34.57 4.16
4982 9656 3.261677 GGCCCACCACCAACCCTA 61.262 66.667 0.00 0.00 35.26 3.53
4983 9657 2.035155 GCCCACCACCAACCCTAC 59.965 66.667 0.00 0.00 0.00 3.18
4984 9658 2.836187 GCCCACCACCAACCCTACA 61.836 63.158 0.00 0.00 0.00 2.74
4985 9659 1.847686 CCCACCACCAACCCTACAA 59.152 57.895 0.00 0.00 0.00 2.41
4986 9660 0.186386 CCCACCACCAACCCTACAAA 59.814 55.000 0.00 0.00 0.00 2.83
4987 9661 1.203125 CCCACCACCAACCCTACAAAT 60.203 52.381 0.00 0.00 0.00 2.32
4988 9662 1.892474 CCACCACCAACCCTACAAATG 59.108 52.381 0.00 0.00 0.00 2.32
4989 9663 2.593026 CACCACCAACCCTACAAATGT 58.407 47.619 0.00 0.00 0.00 2.71
4990 9664 2.556622 CACCACCAACCCTACAAATGTC 59.443 50.000 0.00 0.00 0.00 3.06
4991 9665 2.167662 CCACCAACCCTACAAATGTCC 58.832 52.381 0.00 0.00 0.00 4.02
4992 9666 2.167662 CACCAACCCTACAAATGTCCC 58.832 52.381 0.00 0.00 0.00 4.46
4993 9667 1.783979 ACCAACCCTACAAATGTCCCA 59.216 47.619 0.00 0.00 0.00 4.37
4994 9668 2.167662 CCAACCCTACAAATGTCCCAC 58.832 52.381 0.00 0.00 0.00 4.61
4995 9669 2.489985 CCAACCCTACAAATGTCCCACA 60.490 50.000 0.00 0.00 0.00 4.17
4996 9670 3.226777 CAACCCTACAAATGTCCCACAA 58.773 45.455 0.00 0.00 0.00 3.33
4997 9671 3.603965 ACCCTACAAATGTCCCACAAA 57.396 42.857 0.00 0.00 0.00 2.83
4998 9672 3.917300 ACCCTACAAATGTCCCACAAAA 58.083 40.909 0.00 0.00 0.00 2.44
4999 9673 4.290942 ACCCTACAAATGTCCCACAAAAA 58.709 39.130 0.00 0.00 0.00 1.94
5017 9691 1.656652 AAACTCAATCCGGCTCATCG 58.343 50.000 0.00 0.00 0.00 3.84
5018 9692 0.811616 AACTCAATCCGGCTCATCGC 60.812 55.000 0.00 0.00 38.13 4.58
5019 9693 1.068753 CTCAATCCGGCTCATCGCT 59.931 57.895 0.00 0.00 39.13 4.93
5020 9694 0.943359 CTCAATCCGGCTCATCGCTC 60.943 60.000 0.00 0.00 39.13 5.03
5021 9695 1.958205 CAATCCGGCTCATCGCTCC 60.958 63.158 0.00 0.00 39.13 4.70
5022 9696 3.506059 AATCCGGCTCATCGCTCCG 62.506 63.158 0.00 0.00 42.58 4.63
5024 9698 4.207281 CCGGCTCATCGCTCCGAA 62.207 66.667 1.05 0.00 45.53 4.30
5025 9699 2.202743 CGGCTCATCGCTCCGAAA 60.203 61.111 0.00 0.00 45.53 3.46
5026 9700 2.517450 CGGCTCATCGCTCCGAAAC 61.517 63.158 0.00 0.00 45.53 2.78
5027 9701 2.174319 GGCTCATCGCTCCGAAACC 61.174 63.158 0.00 0.00 39.99 3.27
5028 9702 2.174319 GCTCATCGCTCCGAAACCC 61.174 63.158 0.00 0.00 39.99 4.11
5029 9703 1.517832 CTCATCGCTCCGAAACCCT 59.482 57.895 0.00 0.00 39.99 4.34
5030 9704 0.744874 CTCATCGCTCCGAAACCCTA 59.255 55.000 0.00 0.00 39.99 3.53
5031 9705 0.744874 TCATCGCTCCGAAACCCTAG 59.255 55.000 0.00 0.00 39.99 3.02
5032 9706 0.876342 CATCGCTCCGAAACCCTAGC 60.876 60.000 0.00 0.00 39.99 3.42
5033 9707 1.043673 ATCGCTCCGAAACCCTAGCT 61.044 55.000 0.00 0.00 39.99 3.32
5034 9708 1.227002 CGCTCCGAAACCCTAGCTC 60.227 63.158 0.00 0.00 32.73 4.09
5035 9709 1.898154 GCTCCGAAACCCTAGCTCA 59.102 57.895 0.00 0.00 32.18 4.26
5036 9710 0.460459 GCTCCGAAACCCTAGCTCAC 60.460 60.000 0.00 0.00 32.18 3.51
5037 9711 1.187087 CTCCGAAACCCTAGCTCACT 58.813 55.000 0.00 0.00 0.00 3.41
5038 9712 1.135333 CTCCGAAACCCTAGCTCACTC 59.865 57.143 0.00 0.00 0.00 3.51
5039 9713 0.895530 CCGAAACCCTAGCTCACTCA 59.104 55.000 0.00 0.00 0.00 3.41
5040 9714 1.404315 CCGAAACCCTAGCTCACTCAC 60.404 57.143 0.00 0.00 0.00 3.51
5041 9715 1.546476 CGAAACCCTAGCTCACTCACT 59.454 52.381 0.00 0.00 0.00 3.41
5042 9716 2.416162 CGAAACCCTAGCTCACTCACTC 60.416 54.545 0.00 0.00 0.00 3.51
5043 9717 2.614134 AACCCTAGCTCACTCACTCT 57.386 50.000 0.00 0.00 0.00 3.24
5044 9718 2.137810 ACCCTAGCTCACTCACTCTC 57.862 55.000 0.00 0.00 0.00 3.20
5045 9719 1.341581 ACCCTAGCTCACTCACTCTCC 60.342 57.143 0.00 0.00 0.00 3.71
5046 9720 1.064017 CCCTAGCTCACTCACTCTCCT 60.064 57.143 0.00 0.00 0.00 3.69
5047 9721 2.622977 CCCTAGCTCACTCACTCTCCTT 60.623 54.545 0.00 0.00 0.00 3.36
5048 9722 3.096092 CCTAGCTCACTCACTCTCCTTT 58.904 50.000 0.00 0.00 0.00 3.11
5049 9723 3.130340 CCTAGCTCACTCACTCTCCTTTC 59.870 52.174 0.00 0.00 0.00 2.62
5050 9724 2.888212 AGCTCACTCACTCTCCTTTCT 58.112 47.619 0.00 0.00 0.00 2.52
5051 9725 2.825532 AGCTCACTCACTCTCCTTTCTC 59.174 50.000 0.00 0.00 0.00 2.87
5052 9726 2.415357 GCTCACTCACTCTCCTTTCTCG 60.415 54.545 0.00 0.00 0.00 4.04
5053 9727 1.542030 TCACTCACTCTCCTTTCTCGC 59.458 52.381 0.00 0.00 0.00 5.03
5054 9728 1.543802 CACTCACTCTCCTTTCTCGCT 59.456 52.381 0.00 0.00 0.00 4.93
5055 9729 1.816224 ACTCACTCTCCTTTCTCGCTC 59.184 52.381 0.00 0.00 0.00 5.03
5056 9730 0.805614 TCACTCTCCTTTCTCGCTCG 59.194 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
335 626 6.251471 TCTATCCGGTTTAGATAACTAGGGG 58.749 44.000 0.00 0.00 0.00 4.79
394 685 1.077212 GCCATGATCCACACAGGCT 60.077 57.895 0.00 0.00 44.44 4.58
398 689 0.405198 AACAGGCCATGATCCACACA 59.595 50.000 5.01 0.00 0.00 3.72
446 737 9.768215 TTGGGGAAGATTGATTTTACTCTATTT 57.232 29.630 0.00 0.00 0.00 1.40
491 794 8.871125 AGAAGTAAAGAGAGACAAATGGACTAA 58.129 33.333 0.00 0.00 0.00 2.24
492 795 8.423906 AGAAGTAAAGAGAGACAAATGGACTA 57.576 34.615 0.00 0.00 0.00 2.59
556 861 5.826643 AGTAATTTATTCCAGTGGAAGGCA 58.173 37.500 27.83 14.99 45.48 4.75
643 948 1.077501 CCAGATGCGGGTGGATGTT 60.078 57.895 0.00 0.00 35.67 2.71
680 985 2.449464 CAATGGAAGCAGGGTTCATCA 58.551 47.619 12.65 3.63 0.00 3.07
705 1010 4.530161 AGACCAGAACAGAACTCTAGCAAT 59.470 41.667 0.00 0.00 0.00 3.56
709 1014 5.708948 CAAGAGACCAGAACAGAACTCTAG 58.291 45.833 0.00 0.00 34.33 2.43
728 1033 6.041423 TGAATTAGACAGATGACAGCAAGA 57.959 37.500 0.00 0.00 0.00 3.02
750 1055 7.954835 TGGATTATTGCAGGGAGAAATATTTG 58.045 34.615 5.17 0.00 0.00 2.32
751 1056 8.551682 TTGGATTATTGCAGGGAGAAATATTT 57.448 30.769 0.00 0.00 0.00 1.40
759 1064 4.217510 TGGATTTGGATTATTGCAGGGAG 58.782 43.478 0.00 0.00 0.00 4.30
765 1070 6.018507 GCAAATGACTGGATTTGGATTATTGC 60.019 38.462 13.17 0.00 41.67 3.56
766 1071 7.270047 AGCAAATGACTGGATTTGGATTATTG 58.730 34.615 13.17 0.00 41.67 1.90
771 1080 4.401519 CAGAGCAAATGACTGGATTTGGAT 59.598 41.667 13.17 0.00 41.67 3.41
780 1089 4.940046 ACATAAGTCCAGAGCAAATGACTG 59.060 41.667 0.00 0.00 38.07 3.51
784 1093 7.148188 ACACAATACATAAGTCCAGAGCAAATG 60.148 37.037 0.00 0.00 0.00 2.32
792 1101 5.178061 TCAGCACACAATACATAAGTCCAG 58.822 41.667 0.00 0.00 0.00 3.86
798 1107 9.008965 ACTTGTATTTCAGCACACAATACATAA 57.991 29.630 10.01 0.10 41.04 1.90
812 1121 7.504924 TTGGGAACTGTAACTTGTATTTCAG 57.495 36.000 0.00 0.00 34.23 3.02
817 1126 6.322712 TGCTTTTTGGGAACTGTAACTTGTAT 59.677 34.615 0.00 0.00 0.00 2.29
821 1130 5.869649 ATGCTTTTTGGGAACTGTAACTT 57.130 34.783 0.00 0.00 0.00 2.66
832 1141 3.702147 TGGCACAATGCTTTTTGGG 57.298 47.368 0.13 0.00 44.28 4.12
858 1171 5.606348 ACTCAGAGTTTCAGGTATGATCC 57.394 43.478 0.00 0.00 34.73 3.36
861 1174 6.174720 ACAAACTCAGAGTTTCAGGTATGA 57.825 37.500 23.41 0.00 44.47 2.15
877 1190 6.265577 AGCACAAAATGAACTGTACAAACTC 58.734 36.000 0.00 0.00 0.00 3.01
896 1213 6.751425 GCATGCAATACATTAGTTAAAGCACA 59.249 34.615 14.21 0.00 36.64 4.57
908 1225 8.906867 ACTACTTAAGATTGCATGCAATACATT 58.093 29.630 38.59 31.99 45.50 2.71
976 1294 1.507141 AAGGCGTGCTCCGAAAACTG 61.507 55.000 0.43 0.00 39.56 3.16
978 1296 0.869730 TTAAGGCGTGCTCCGAAAAC 59.130 50.000 0.43 0.00 39.56 2.43
990 1308 3.380479 TCCGACTCCATTATTAAGGCG 57.620 47.619 0.00 0.00 41.23 5.52
1023 1345 3.147595 GGCCCAATTTCCTCCCGC 61.148 66.667 0.00 0.00 0.00 6.13
1039 1361 6.563422 TGCGAAAATCATATTCTCTTTTGGG 58.437 36.000 0.00 0.00 0.00 4.12
1042 1364 6.855836 TGCTGCGAAAATCATATTCTCTTTT 58.144 32.000 0.00 0.00 0.00 2.27
1049 1371 3.696051 ACACCTGCTGCGAAAATCATATT 59.304 39.130 0.00 0.00 0.00 1.28
1051 1373 2.710377 ACACCTGCTGCGAAAATCATA 58.290 42.857 0.00 0.00 0.00 2.15
1074 1396 5.215252 AGACACCCCACATAAATATCTCG 57.785 43.478 0.00 0.00 0.00 4.04
1091 1413 2.074547 TTCGTCGGGATCAAAGACAC 57.925 50.000 12.68 0.00 34.80 3.67
1107 1429 3.604130 CCGCTTTGGCAGTAATTCG 57.396 52.632 0.00 0.00 38.60 3.34
1119 1441 1.799258 CTTTCACTGCTGGCCGCTTT 61.799 55.000 18.14 4.83 40.11 3.51
1121 1443 2.670934 CTTTCACTGCTGGCCGCT 60.671 61.111 18.14 0.00 40.11 5.52
1125 1447 1.166531 ACGAACCTTTCACTGCTGGC 61.167 55.000 0.00 0.00 0.00 4.85
1127 1449 0.588252 CCACGAACCTTTCACTGCTG 59.412 55.000 0.00 0.00 0.00 4.41
1162 1484 6.610741 ATCGAAGGAAAGTAAGCAATCATC 57.389 37.500 0.00 0.00 0.00 2.92
1185 1507 8.758829 CCCATGGAGCTATATGTATGTACTAAA 58.241 37.037 15.22 0.00 0.00 1.85
1232 2033 4.142381 GGAAGAAGCGATTTTGCTGGTTAT 60.142 41.667 0.00 0.00 46.60 1.89
1280 2081 1.303561 TGACCAACAGGCTGCCATC 60.304 57.895 22.65 8.00 0.00 3.51
1668 2473 0.387929 GGATACCGTTCAGCATCCGA 59.612 55.000 0.00 0.00 0.00 4.55
1927 3866 4.082300 CCCATTTGTGTTATAGTTGCAGCA 60.082 41.667 2.55 0.00 0.00 4.41
1934 3873 9.357161 TGTTTAAAGTCCCATTTGTGTTATAGT 57.643 29.630 0.00 0.00 0.00 2.12
1994 3933 6.214615 TCTCCCAGATGAACCATAGTGTTAAA 59.785 38.462 0.00 0.00 0.00 1.52
2006 3945 7.256286 CAAATTCAGAAATCTCCCAGATGAAC 58.744 38.462 0.00 0.00 34.65 3.18
2129 4068 8.849168 TCATGACATCTACAAAGAATGTTTGTT 58.151 29.630 13.65 0.00 43.63 2.83
2137 4076 7.665145 TGTGGAATTCATGACATCTACAAAGAA 59.335 33.333 18.21 1.82 34.73 2.52
2202 4304 2.366916 CACCTCCGCCTCTATTTCTCAT 59.633 50.000 0.00 0.00 0.00 2.90
2366 4468 1.135689 CCAGCAAACGGAAAAGGATCG 60.136 52.381 0.00 0.00 0.00 3.69
2371 4473 3.780902 AGAAAACCAGCAAACGGAAAAG 58.219 40.909 0.00 0.00 0.00 2.27
2431 4533 7.676683 ACTAGTTTATTCCATCAGGCTCTAA 57.323 36.000 0.00 0.00 33.74 2.10
2532 4635 5.818136 TCTAATTTCAGAAAGAATGGCGG 57.182 39.130 1.28 0.00 35.83 6.13
2533 4636 6.094048 TCCTTCTAATTTCAGAAAGAATGGCG 59.906 38.462 1.28 0.00 35.83 5.69
2650 4754 4.742438 AAAAAGCTTGCAATTGCTGATG 57.258 36.364 29.37 17.25 42.66 3.07
2734 4897 4.142491 TGGTGCTGTAGTCAAAACAAACAG 60.142 41.667 0.00 0.00 41.25 3.16
2851 5014 4.177165 TGTAATGGCAAAACTGCTCATG 57.823 40.909 0.00 0.00 34.73 3.07
2964 5127 4.555906 CGTATGAAACTCCGCAAAAGGTTT 60.556 41.667 0.00 0.00 35.06 3.27
2968 5131 2.505866 GCGTATGAAACTCCGCAAAAG 58.494 47.619 0.00 0.00 45.12 2.27
2969 5132 1.136197 CGCGTATGAAACTCCGCAAAA 60.136 47.619 0.00 0.00 46.02 2.44
2975 5138 4.327898 TGTTATTCACGCGTATGAAACTCC 59.672 41.667 13.44 3.49 41.78 3.85
3008 5171 3.873910 CGAAGGTCCCATGTACAGAATT 58.126 45.455 0.33 0.00 0.00 2.17
3009 5172 3.543680 CGAAGGTCCCATGTACAGAAT 57.456 47.619 0.33 0.00 0.00 2.40
3036 5199 0.243636 GCGGTCCAAATGGTTCCAAG 59.756 55.000 13.50 3.65 36.34 3.61
3048 5211 2.046988 CACATCAGCAGCGGTCCA 60.047 61.111 0.00 0.00 0.00 4.02
3069 5232 1.144708 TCAGAACTGCCCATTGGAACA 59.855 47.619 3.62 1.11 0.00 3.18
3108 5271 4.032900 CCACGATCCTTGAAGATAACAACG 59.967 45.833 0.00 0.00 0.00 4.10
3114 5277 3.040655 TCCCCACGATCCTTGAAGATA 57.959 47.619 0.00 0.00 0.00 1.98
3155 7766 2.297315 CCTACGAGATAGCCATTGAGCA 59.703 50.000 0.00 0.00 34.23 4.26
3234 7845 3.119495 TCGTCGAGATCTTGCATTTCTCA 60.119 43.478 16.61 5.88 36.51 3.27
3279 7890 1.600076 CACACCTTGCAGCAGAGCT 60.600 57.895 0.00 0.00 40.77 4.09
3280 7891 2.952245 CACACCTTGCAGCAGAGC 59.048 61.111 0.00 0.00 0.00 4.09
3331 7943 9.723601 AAATATACTGTAGGAAACGGTTAAACA 57.276 29.630 0.00 0.00 45.88 2.83
3348 7960 4.281182 AGTCAGGACCGCCTAAATATACTG 59.719 45.833 0.00 0.00 44.80 2.74
3349 7961 4.481072 AGTCAGGACCGCCTAAATATACT 58.519 43.478 0.00 0.00 44.80 2.12
3350 7962 4.280174 TGAGTCAGGACCGCCTAAATATAC 59.720 45.833 0.00 0.00 44.80 1.47
3363 7975 2.484889 GAAACACCACTGAGTCAGGAC 58.515 52.381 23.79 2.95 35.51 3.85
3374 7986 2.600470 GGCCCCTGGAAACACCAC 60.600 66.667 0.00 0.00 44.64 4.16
3397 8009 2.500183 GAAAACCACGAGCTCGCTGC 62.500 60.000 34.83 14.01 44.43 5.25
3408 8020 2.945456 ACTTGGGGAAGAGAAAACCAC 58.055 47.619 0.00 0.00 0.00 4.16
3436 8048 2.294512 CGTATTACGGGAGGGGTAGAAC 59.705 54.545 8.36 0.00 38.08 3.01
3467 8079 0.245539 TTGTTACTCTTCCTCCGCCG 59.754 55.000 0.00 0.00 0.00 6.46
3468 8080 1.549170 TCTTGTTACTCTTCCTCCGCC 59.451 52.381 0.00 0.00 0.00 6.13
3469 8081 2.029290 TGTCTTGTTACTCTTCCTCCGC 60.029 50.000 0.00 0.00 0.00 5.54
3470 8082 3.256136 ACTGTCTTGTTACTCTTCCTCCG 59.744 47.826 0.00 0.00 0.00 4.63
3471 8083 4.561105 CACTGTCTTGTTACTCTTCCTCC 58.439 47.826 0.00 0.00 0.00 4.30
3472 8084 3.991121 GCACTGTCTTGTTACTCTTCCTC 59.009 47.826 0.00 0.00 0.00 3.71
3504 8149 1.229400 TTACGTTCCTCCCCTGCCT 60.229 57.895 0.00 0.00 0.00 4.75
3566 8218 8.988934 GGCGTAATATATGAAATCAGTTGAAGA 58.011 33.333 0.00 0.00 0.00 2.87
3701 8358 9.206870 CAATTGCTTCCTAAAAAGATTTAAGCA 57.793 29.630 7.87 7.87 41.97 3.91
3747 8406 4.626529 GCTGCCCTAAATTTCTCACTACCT 60.627 45.833 0.00 0.00 0.00 3.08
3753 8412 2.083774 CGTGCTGCCCTAAATTTCTCA 58.916 47.619 0.00 0.00 0.00 3.27
3769 8428 1.830044 GTCGTAAAATAAAGCGCGTGC 59.170 47.619 14.39 14.39 43.24 5.34
3775 8434 5.236695 GGGGAGATCAGTCGTAAAATAAAGC 59.763 44.000 0.00 0.00 0.00 3.51
3786 8445 2.587522 TGAGTATGGGGAGATCAGTCG 58.412 52.381 0.00 0.00 0.00 4.18
3794 8453 3.455910 TCACAGGAAATGAGTATGGGGAG 59.544 47.826 0.00 0.00 0.00 4.30
3854 8513 5.154418 TCAAATCCCTCTTTCCACCAAAAT 58.846 37.500 0.00 0.00 0.00 1.82
3861 8520 5.360714 GCACATAATCAAATCCCTCTTTCCA 59.639 40.000 0.00 0.00 0.00 3.53
3916 8575 8.425703 TGTGTTAGTATGCAGTTAATATGGCTA 58.574 33.333 0.00 0.00 0.00 3.93
3933 8592 4.833380 AGGAAGCAGAGACTTGTGTTAGTA 59.167 41.667 0.00 0.00 0.00 1.82
3975 8638 5.172687 TGATGGCACCACTACTTTTCATA 57.827 39.130 0.00 0.00 0.00 2.15
3979 8642 4.202212 GGTTTTGATGGCACCACTACTTTT 60.202 41.667 0.00 0.00 0.00 2.27
4038 8701 4.436998 CACTCCTCGTCCCCGCAC 62.437 72.222 0.00 0.00 0.00 5.34
4044 8707 2.680352 TGCCCTCACTCCTCGTCC 60.680 66.667 0.00 0.00 0.00 4.79
4088 8751 0.533032 GTATGAGGCGGGAGATAGGC 59.467 60.000 0.00 0.00 0.00 3.93
4187 8850 0.674895 CTTGAGCCGCCTTAAGCTGT 60.675 55.000 0.00 0.00 40.11 4.40
4256 8919 3.069318 GGCCGACGAGTTCCTCCT 61.069 66.667 0.00 0.00 0.00 3.69
4263 8926 3.264866 GACGAACAGGCCGACGAGT 62.265 63.158 17.32 8.15 0.00 4.18
4482 9145 1.269621 CCGACCTCAAAACTCACGAGT 60.270 52.381 0.00 0.00 44.94 4.18
4483 9146 1.000607 TCCGACCTCAAAACTCACGAG 60.001 52.381 0.00 0.00 0.00 4.18
4484 9147 1.034356 TCCGACCTCAAAACTCACGA 58.966 50.000 0.00 0.00 0.00 4.35
4485 9148 1.137513 GTCCGACCTCAAAACTCACG 58.862 55.000 0.00 0.00 0.00 4.35
4486 9149 2.135933 CAGTCCGACCTCAAAACTCAC 58.864 52.381 0.00 0.00 0.00 3.51
4487 9150 1.070134 CCAGTCCGACCTCAAAACTCA 59.930 52.381 0.00 0.00 0.00 3.41
4488 9151 1.343465 TCCAGTCCGACCTCAAAACTC 59.657 52.381 0.00 0.00 0.00 3.01
4540 9203 7.867909 CCAGGTTCTTAACTTCAAAAAGGATTC 59.132 37.037 0.00 0.00 36.78 2.52
4542 9205 6.239317 GCCAGGTTCTTAACTTCAAAAAGGAT 60.239 38.462 0.00 0.00 36.78 3.24
4556 9223 2.038557 GGTTCACTGAGCCAGGTTCTTA 59.961 50.000 7.04 0.00 35.51 2.10
4567 9234 4.739716 CCAAACAAATTTCGGTTCACTGAG 59.260 41.667 0.00 0.00 32.05 3.35
4576 9243 2.286563 GTGCCAACCAAACAAATTTCGG 59.713 45.455 0.00 0.00 0.00 4.30
4607 9274 2.517402 GCAACGGGGTTCCACACA 60.517 61.111 0.00 0.00 0.00 3.72
4614 9288 1.671901 CCAAACACTGCAACGGGGTT 61.672 55.000 0.00 0.00 38.07 4.11
4646 9320 8.506437 TCAGTTTATTCTGATTACTTTGTGCTG 58.494 33.333 0.00 0.00 39.20 4.41
4693 9367 6.172630 AGAAAACAAAATGAACAAGGCAGTT 58.827 32.000 0.00 0.00 0.00 3.16
4727 9401 3.942829 TGGCAGAGGAGTATTTCAACTG 58.057 45.455 0.00 0.00 35.26 3.16
4732 9406 4.095483 CACAACATGGCAGAGGAGTATTTC 59.905 45.833 0.00 0.00 0.00 2.17
4735 9409 2.840038 TCACAACATGGCAGAGGAGTAT 59.160 45.455 0.00 0.00 0.00 2.12
4751 9425 4.551702 TGCTCTTAGGCAAGTATCACAA 57.448 40.909 0.00 0.00 39.43 3.33
4758 9432 4.020662 GGCTATAGATGCTCTTAGGCAAGT 60.021 45.833 3.21 0.00 45.68 3.16
4766 9440 1.274728 CGCCTGGCTATAGATGCTCTT 59.725 52.381 17.92 0.00 0.00 2.85
4767 9441 0.894141 CGCCTGGCTATAGATGCTCT 59.106 55.000 17.92 0.00 0.00 4.09
4768 9442 0.739112 GCGCCTGGCTATAGATGCTC 60.739 60.000 17.92 0.00 39.11 4.26
4769 9443 1.294780 GCGCCTGGCTATAGATGCT 59.705 57.895 17.92 0.00 39.11 3.79
4770 9444 1.743252 GGCGCCTGGCTATAGATGC 60.743 63.158 22.15 10.44 42.94 3.91
4771 9445 4.606071 GGCGCCTGGCTATAGATG 57.394 61.111 22.15 0.00 42.94 2.90
4779 9453 4.503314 GCATTTGAGGCGCCTGGC 62.503 66.667 38.41 24.10 42.51 4.85
4780 9454 3.830192 GGCATTTGAGGCGCCTGG 61.830 66.667 38.41 18.41 42.78 4.45
4781 9455 3.830192 GGGCATTTGAGGCGCCTG 61.830 66.667 38.41 21.83 45.50 4.85
4802 9476 3.461773 AGTGATCCGGGTGAGCGG 61.462 66.667 0.00 0.00 29.76 5.52
4803 9477 2.202797 CAGTGATCCGGGTGAGCG 60.203 66.667 0.00 0.00 29.76 5.03
4804 9478 1.153549 GTCAGTGATCCGGGTGAGC 60.154 63.158 0.00 0.00 0.00 4.26
4805 9479 0.826715 ATGTCAGTGATCCGGGTGAG 59.173 55.000 0.00 0.00 0.00 3.51
4806 9480 0.536724 CATGTCAGTGATCCGGGTGA 59.463 55.000 0.00 0.00 0.00 4.02
4807 9481 0.250234 ACATGTCAGTGATCCGGGTG 59.750 55.000 0.00 0.00 0.00 4.61
4808 9482 0.537188 GACATGTCAGTGATCCGGGT 59.463 55.000 21.07 0.00 0.00 5.28
4809 9483 0.536724 TGACATGTCAGTGATCCGGG 59.463 55.000 24.56 0.00 34.14 5.73
4810 9484 1.645034 GTGACATGTCAGTGATCCGG 58.355 55.000 28.54 0.00 40.75 5.14
4811 9485 1.135402 TCGTGACATGTCAGTGATCCG 60.135 52.381 28.54 24.49 40.75 4.18
4812 9486 2.654749 TCGTGACATGTCAGTGATCC 57.345 50.000 28.54 14.49 40.75 3.36
4813 9487 5.536554 AAAATCGTGACATGTCAGTGATC 57.463 39.130 29.67 18.74 40.75 2.92
4814 9488 5.947228 AAAAATCGTGACATGTCAGTGAT 57.053 34.783 28.54 27.32 40.75 3.06
4833 9507 5.369833 TGAGGTGTCCGTCTAAATCAAAAA 58.630 37.500 0.00 0.00 0.00 1.94
4834 9508 4.963373 TGAGGTGTCCGTCTAAATCAAAA 58.037 39.130 0.00 0.00 0.00 2.44
4835 9509 4.610605 TGAGGTGTCCGTCTAAATCAAA 57.389 40.909 0.00 0.00 0.00 2.69
4836 9510 4.610605 TTGAGGTGTCCGTCTAAATCAA 57.389 40.909 0.00 0.00 0.00 2.57
4837 9511 4.610605 TTTGAGGTGTCCGTCTAAATCA 57.389 40.909 0.00 0.00 0.00 2.57
4838 9512 5.175859 TCATTTGAGGTGTCCGTCTAAATC 58.824 41.667 0.00 0.00 0.00 2.17
4839 9513 5.160607 TCATTTGAGGTGTCCGTCTAAAT 57.839 39.130 0.00 0.00 0.00 1.40
4840 9514 4.039973 ACTCATTTGAGGTGTCCGTCTAAA 59.960 41.667 11.99 0.00 46.13 1.85
4841 9515 3.576982 ACTCATTTGAGGTGTCCGTCTAA 59.423 43.478 11.99 0.00 46.13 2.10
4842 9516 3.162666 ACTCATTTGAGGTGTCCGTCTA 58.837 45.455 11.99 0.00 46.13 2.59
4843 9517 1.971357 ACTCATTTGAGGTGTCCGTCT 59.029 47.619 11.99 0.00 46.13 4.18
4844 9518 2.028930 AGACTCATTTGAGGTGTCCGTC 60.029 50.000 11.99 0.11 46.13 4.79
4845 9519 1.971357 AGACTCATTTGAGGTGTCCGT 59.029 47.619 11.99 0.00 46.13 4.69
4846 9520 2.751166 AGACTCATTTGAGGTGTCCG 57.249 50.000 11.99 0.00 46.13 4.79
4847 9521 5.107065 CGTTTAAGACTCATTTGAGGTGTCC 60.107 44.000 11.99 0.00 46.13 4.02
4848 9522 5.614887 GCGTTTAAGACTCATTTGAGGTGTC 60.615 44.000 11.99 2.07 46.13 3.67
4849 9523 4.213482 GCGTTTAAGACTCATTTGAGGTGT 59.787 41.667 11.99 0.00 46.13 4.16
4850 9524 4.452455 AGCGTTTAAGACTCATTTGAGGTG 59.548 41.667 11.99 0.00 46.13 4.00
4851 9525 4.642429 AGCGTTTAAGACTCATTTGAGGT 58.358 39.130 11.99 0.25 46.13 3.85
4852 9526 4.201628 CGAGCGTTTAAGACTCATTTGAGG 60.202 45.833 11.99 0.00 46.13 3.86
4854 9528 3.678072 CCGAGCGTTTAAGACTCATTTGA 59.322 43.478 0.00 0.00 0.00 2.69
4855 9529 3.181520 CCCGAGCGTTTAAGACTCATTTG 60.182 47.826 0.00 0.00 0.00 2.32
4856 9530 3.000727 CCCGAGCGTTTAAGACTCATTT 58.999 45.455 0.00 0.00 0.00 2.32
4857 9531 2.618053 CCCGAGCGTTTAAGACTCATT 58.382 47.619 0.00 0.00 0.00 2.57
4858 9532 1.739371 GCCCGAGCGTTTAAGACTCAT 60.739 52.381 0.00 0.00 0.00 2.90
4859 9533 0.389426 GCCCGAGCGTTTAAGACTCA 60.389 55.000 0.00 0.00 0.00 3.41
4860 9534 0.108756 AGCCCGAGCGTTTAAGACTC 60.109 55.000 0.00 0.00 46.67 3.36
4861 9535 1.180029 TAGCCCGAGCGTTTAAGACT 58.820 50.000 0.00 0.00 46.67 3.24
4862 9536 1.657594 GTTAGCCCGAGCGTTTAAGAC 59.342 52.381 0.00 0.00 46.67 3.01
4863 9537 1.404583 GGTTAGCCCGAGCGTTTAAGA 60.405 52.381 0.00 0.00 46.67 2.10
4864 9538 1.004595 GGTTAGCCCGAGCGTTTAAG 58.995 55.000 0.00 0.00 46.67 1.85
4865 9539 3.142124 GGTTAGCCCGAGCGTTTAA 57.858 52.632 0.00 0.00 46.67 1.52
4866 9540 4.917474 GGTTAGCCCGAGCGTTTA 57.083 55.556 0.00 0.00 46.67 2.01
4876 9550 4.484872 GAGGGGTGCCGGTTAGCC 62.485 72.222 17.46 17.46 35.00 3.93
4877 9551 1.692173 TATGAGGGGTGCCGGTTAGC 61.692 60.000 1.90 1.96 0.00 3.09
4878 9552 1.002087 GATATGAGGGGTGCCGGTTAG 59.998 57.143 1.90 0.00 0.00 2.34
4879 9553 1.053424 GATATGAGGGGTGCCGGTTA 58.947 55.000 1.90 0.00 0.00 2.85
4880 9554 1.705997 GGATATGAGGGGTGCCGGTT 61.706 60.000 1.90 0.00 0.00 4.44
4881 9555 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
4882 9556 2.116983 CTGGATATGAGGGGTGCCGG 62.117 65.000 0.00 0.00 0.00 6.13
4883 9557 1.372683 CTGGATATGAGGGGTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
4884 9558 1.073897 GCTGGATATGAGGGGTGCC 59.926 63.158 0.00 0.00 0.00 5.01
4885 9559 1.073897 GGCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
4886 9560 1.061905 TGGGCTGGATATGAGGGGTG 61.062 60.000 0.00 0.00 0.00 4.61
4887 9561 0.328450 TTGGGCTGGATATGAGGGGT 60.328 55.000 0.00 0.00 0.00 4.95
4888 9562 0.852842 TTTGGGCTGGATATGAGGGG 59.147 55.000 0.00 0.00 0.00 4.79
4889 9563 2.986534 ATTTGGGCTGGATATGAGGG 57.013 50.000 0.00 0.00 0.00 4.30
4890 9564 4.275810 CCATATTTGGGCTGGATATGAGG 58.724 47.826 12.68 0.00 39.56 3.86
4903 9577 2.760092 CCCATATTCGCCCCATATTTGG 59.240 50.000 0.00 0.00 43.23 3.28
4904 9578 2.760092 CCCCATATTCGCCCCATATTTG 59.240 50.000 0.00 0.00 0.00 2.32
4905 9579 2.381961 ACCCCATATTCGCCCCATATTT 59.618 45.455 0.00 0.00 0.00 1.40
4906 9580 2.000048 ACCCCATATTCGCCCCATATT 59.000 47.619 0.00 0.00 0.00 1.28
4907 9581 1.284785 CACCCCATATTCGCCCCATAT 59.715 52.381 0.00 0.00 0.00 1.78
4908 9582 0.695924 CACCCCATATTCGCCCCATA 59.304 55.000 0.00 0.00 0.00 2.74
4909 9583 1.460255 CACCCCATATTCGCCCCAT 59.540 57.895 0.00 0.00 0.00 4.00
4910 9584 2.762554 CCACCCCATATTCGCCCCA 61.763 63.158 0.00 0.00 0.00 4.96
4911 9585 2.115266 CCACCCCATATTCGCCCC 59.885 66.667 0.00 0.00 0.00 5.80
4912 9586 1.228154 GACCACCCCATATTCGCCC 60.228 63.158 0.00 0.00 0.00 6.13
4913 9587 1.228154 GGACCACCCCATATTCGCC 60.228 63.158 0.00 0.00 0.00 5.54
4914 9588 1.597027 CGGACCACCCCATATTCGC 60.597 63.158 0.00 0.00 0.00 4.70
4915 9589 1.070786 CCGGACCACCCCATATTCG 59.929 63.158 0.00 0.00 0.00 3.34
4916 9590 0.108019 GTCCGGACCACCCCATATTC 59.892 60.000 24.75 0.00 0.00 1.75
4917 9591 0.622154 TGTCCGGACCACCCCATATT 60.622 55.000 31.19 0.00 0.00 1.28
4918 9592 1.003704 TGTCCGGACCACCCCATAT 59.996 57.895 31.19 0.00 0.00 1.78
4919 9593 1.991167 GTGTCCGGACCACCCCATA 60.991 63.158 31.19 7.57 0.00 2.74
4920 9594 3.327404 GTGTCCGGACCACCCCAT 61.327 66.667 31.19 0.00 0.00 4.00
4953 9627 2.525629 TGGGCCGGTCTTGTCAGA 60.526 61.111 5.77 0.00 0.00 3.27
4954 9628 2.358737 GTGGGCCGGTCTTGTCAG 60.359 66.667 5.77 0.00 0.00 3.51
4955 9629 3.948719 GGTGGGCCGGTCTTGTCA 61.949 66.667 5.77 0.00 0.00 3.58
4956 9630 3.948719 TGGTGGGCCGGTCTTGTC 61.949 66.667 5.77 0.00 37.67 3.18
4957 9631 4.265056 GTGGTGGGCCGGTCTTGT 62.265 66.667 5.77 0.00 37.67 3.16
4965 9639 3.261677 TAGGGTTGGTGGTGGGCC 61.262 66.667 0.00 0.00 0.00 5.80
4966 9640 2.035155 GTAGGGTTGGTGGTGGGC 59.965 66.667 0.00 0.00 0.00 5.36
4967 9641 0.186386 TTTGTAGGGTTGGTGGTGGG 59.814 55.000 0.00 0.00 0.00 4.61
4968 9642 1.892474 CATTTGTAGGGTTGGTGGTGG 59.108 52.381 0.00 0.00 0.00 4.61
4969 9643 2.556622 GACATTTGTAGGGTTGGTGGTG 59.443 50.000 0.00 0.00 0.00 4.17
4970 9644 2.490168 GGACATTTGTAGGGTTGGTGGT 60.490 50.000 0.00 0.00 0.00 4.16
4971 9645 2.167662 GGACATTTGTAGGGTTGGTGG 58.832 52.381 0.00 0.00 0.00 4.61
4972 9646 2.167662 GGGACATTTGTAGGGTTGGTG 58.832 52.381 0.00 0.00 0.00 4.17
4973 9647 1.783979 TGGGACATTTGTAGGGTTGGT 59.216 47.619 0.00 0.00 0.00 3.67
4974 9648 2.167662 GTGGGACATTTGTAGGGTTGG 58.832 52.381 0.00 0.00 44.52 3.77
4975 9649 2.870175 TGTGGGACATTTGTAGGGTTG 58.130 47.619 0.00 0.00 44.52 3.77
4976 9650 3.603965 TTGTGGGACATTTGTAGGGTT 57.396 42.857 0.00 0.00 44.52 4.11
4977 9651 3.603965 TTTGTGGGACATTTGTAGGGT 57.396 42.857 0.00 0.00 44.52 4.34
4978 9652 4.946478 TTTTTGTGGGACATTTGTAGGG 57.054 40.909 0.00 0.00 44.52 3.53
4996 9670 2.420022 CGATGAGCCGGATTGAGTTTTT 59.580 45.455 5.05 0.00 0.00 1.94
4997 9671 2.009774 CGATGAGCCGGATTGAGTTTT 58.990 47.619 5.05 0.00 0.00 2.43
4998 9672 1.656652 CGATGAGCCGGATTGAGTTT 58.343 50.000 5.05 0.00 0.00 2.66
4999 9673 0.811616 GCGATGAGCCGGATTGAGTT 60.812 55.000 5.05 0.00 40.81 3.01
5000 9674 1.227380 GCGATGAGCCGGATTGAGT 60.227 57.895 5.05 0.00 40.81 3.41
5001 9675 3.635204 GCGATGAGCCGGATTGAG 58.365 61.111 5.05 0.00 40.81 3.02
5011 9685 0.744874 TAGGGTTTCGGAGCGATGAG 59.255 55.000 0.00 0.00 35.23 2.90
5012 9686 0.744874 CTAGGGTTTCGGAGCGATGA 59.255 55.000 0.00 0.00 35.23 2.92
5013 9687 0.876342 GCTAGGGTTTCGGAGCGATG 60.876 60.000 0.00 0.00 35.23 3.84
5014 9688 1.043673 AGCTAGGGTTTCGGAGCGAT 61.044 55.000 0.00 0.00 39.96 4.58
5015 9689 1.664321 GAGCTAGGGTTTCGGAGCGA 61.664 60.000 0.00 0.00 39.96 4.93
5016 9690 1.227002 GAGCTAGGGTTTCGGAGCG 60.227 63.158 0.00 0.00 39.96 5.03
5017 9691 0.460459 GTGAGCTAGGGTTTCGGAGC 60.460 60.000 0.00 0.00 35.07 4.70
5018 9692 1.135333 GAGTGAGCTAGGGTTTCGGAG 59.865 57.143 0.00 0.00 0.00 4.63
5019 9693 1.183549 GAGTGAGCTAGGGTTTCGGA 58.816 55.000 0.00 0.00 0.00 4.55
5020 9694 0.895530 TGAGTGAGCTAGGGTTTCGG 59.104 55.000 0.00 0.00 0.00 4.30
5021 9695 1.546476 AGTGAGTGAGCTAGGGTTTCG 59.454 52.381 0.00 0.00 0.00 3.46
5022 9696 2.829120 AGAGTGAGTGAGCTAGGGTTTC 59.171 50.000 0.00 0.00 0.00 2.78
5023 9697 2.829120 GAGAGTGAGTGAGCTAGGGTTT 59.171 50.000 0.00 0.00 0.00 3.27
5024 9698 2.452505 GAGAGTGAGTGAGCTAGGGTT 58.547 52.381 0.00 0.00 0.00 4.11
5025 9699 1.341581 GGAGAGTGAGTGAGCTAGGGT 60.342 57.143 0.00 0.00 0.00 4.34
5026 9700 1.064017 AGGAGAGTGAGTGAGCTAGGG 60.064 57.143 0.00 0.00 0.00 3.53
5027 9701 2.435372 AGGAGAGTGAGTGAGCTAGG 57.565 55.000 0.00 0.00 0.00 3.02
5028 9702 4.016444 AGAAAGGAGAGTGAGTGAGCTAG 58.984 47.826 0.00 0.00 0.00 3.42
5029 9703 4.013728 GAGAAAGGAGAGTGAGTGAGCTA 58.986 47.826 0.00 0.00 0.00 3.32
5030 9704 2.825532 GAGAAAGGAGAGTGAGTGAGCT 59.174 50.000 0.00 0.00 0.00 4.09
5031 9705 2.415357 CGAGAAAGGAGAGTGAGTGAGC 60.415 54.545 0.00 0.00 0.00 4.26
5032 9706 2.415357 GCGAGAAAGGAGAGTGAGTGAG 60.415 54.545 0.00 0.00 0.00 3.51
5033 9707 1.542030 GCGAGAAAGGAGAGTGAGTGA 59.458 52.381 0.00 0.00 0.00 3.41
5034 9708 1.543802 AGCGAGAAAGGAGAGTGAGTG 59.456 52.381 0.00 0.00 0.00 3.51
5035 9709 1.816224 GAGCGAGAAAGGAGAGTGAGT 59.184 52.381 0.00 0.00 0.00 3.41
5036 9710 1.202132 CGAGCGAGAAAGGAGAGTGAG 60.202 57.143 0.00 0.00 0.00 3.51
5037 9711 0.805614 CGAGCGAGAAAGGAGAGTGA 59.194 55.000 0.00 0.00 0.00 3.41
5038 9712 3.320884 CGAGCGAGAAAGGAGAGTG 57.679 57.895 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.