Multiple sequence alignment - TraesCS2A01G170200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G170200 chr2A 100.000 3730 0 0 1 3730 125254169 125250440 0.000000e+00 6889
1 TraesCS2A01G170200 chr2A 93.191 235 15 1 1331 1564 125459448 125459214 9.920000e-91 344
2 TraesCS2A01G170200 chr2A 87.589 282 35 0 1850 2131 125458873 125458592 9.990000e-86 327
3 TraesCS2A01G170200 chr2B 86.898 1992 114 59 878 2794 174593911 174591992 0.000000e+00 2097
4 TraesCS2A01G170200 chr2B 89.650 657 37 20 3071 3721 174591992 174591361 0.000000e+00 808
5 TraesCS2A01G170200 chr2B 78.436 844 145 29 1850 2660 174663514 174662675 1.990000e-142 516
6 TraesCS2A01G170200 chr2B 89.362 282 23 5 1287 1562 174663999 174663719 7.670000e-92 348
7 TraesCS2A01G170200 chr2B 88.591 298 17 5 2794 3081 198310061 198309771 2.760000e-91 346
8 TraesCS2A01G170200 chr2D 92.493 1492 68 19 851 2331 121061854 121060396 0.000000e+00 2095
9 TraesCS2A01G170200 chr2D 92.244 851 47 5 1 849 501665439 501666272 0.000000e+00 1188
10 TraesCS2A01G170200 chr2D 89.104 670 43 13 3075 3727 121059839 121059183 0.000000e+00 806
11 TraesCS2A01G170200 chr2D 78.220 1056 156 41 1663 2652 121355466 121354419 3.190000e-170 608
12 TraesCS2A01G170200 chr2D 91.071 448 23 9 2356 2794 121060341 121059902 1.150000e-164 590
13 TraesCS2A01G170200 chr2D 83.851 483 48 18 1098 1564 121356109 121355641 2.060000e-117 433
14 TraesCS2A01G170200 chr2D 86.940 268 28 4 2791 3052 448224118 448224384 1.010000e-75 294
15 TraesCS2A01G170200 chr1A 93.420 851 45 5 1 849 33115204 33114363 0.000000e+00 1251
16 TraesCS2A01G170200 chr1A 90.175 285 17 2 2779 3052 27754252 27754536 9.850000e-96 361
17 TraesCS2A01G170200 chr3D 92.506 854 52 5 1 851 330685215 330686059 0.000000e+00 1212
18 TraesCS2A01G170200 chr3D 88.848 269 19 4 2794 3052 355880018 355879751 1.670000e-83 320
19 TraesCS2A01G170200 chr3D 86.942 291 25 7 2776 3056 48834696 48834983 7.780000e-82 315
20 TraesCS2A01G170200 chrUn 92.281 855 50 9 1 851 283563624 283564466 0.000000e+00 1199
21 TraesCS2A01G170200 chrUn 92.164 855 51 9 1 851 283563227 283562385 0.000000e+00 1194
22 TraesCS2A01G170200 chr5A 92.473 837 51 5 12 845 203438101 203437274 0.000000e+00 1186
23 TraesCS2A01G170200 chr5A 90.672 268 15 1 2795 3052 141109090 141108823 7.670000e-92 348
24 TraesCS2A01G170200 chr5A 88.776 294 16 3 2794 3077 194725203 194725489 9.920000e-91 344
25 TraesCS2A01G170200 chr5A 88.176 296 16 6 2794 3078 650691840 650692127 5.970000e-88 335
26 TraesCS2A01G170200 chr4A 91.549 852 58 8 1 849 176786731 176787571 0.000000e+00 1162
27 TraesCS2A01G170200 chr4A 90.845 852 59 9 1 845 415867887 415867048 0.000000e+00 1123
28 TraesCS2A01G170200 chr3A 91.135 846 57 9 1 845 53048967 53048139 0.000000e+00 1131
29 TraesCS2A01G170200 chr3A 90.706 269 18 1 2791 3052 390010376 390010644 5.930000e-93 351
30 TraesCS2A01G170200 chr4B 90.595 840 61 7 1 833 449931393 449930565 0.000000e+00 1098
31 TraesCS2A01G170200 chr5D 94.092 694 31 4 1 693 539442162 539441478 0.000000e+00 1046
32 TraesCS2A01G170200 chr7A 91.450 269 13 1 2794 3052 458978864 458978596 9.850000e-96 361
33 TraesCS2A01G170200 chr7A 87.119 295 21 4 2791 3075 143180552 143180839 6.010000e-83 318
34 TraesCS2A01G170200 chr4D 89.078 293 15 3 2796 3078 473193281 473193566 7.670000e-92 348
35 TraesCS2A01G170200 chr4D 86.799 303 22 4 2788 3079 366445086 366445381 4.650000e-84 322
36 TraesCS2A01G170200 chr1B 90.769 260 23 1 2794 3052 94638785 94638526 2.760000e-91 346
37 TraesCS2A01G170200 chr5B 86.755 302 30 4 2787 3078 618153567 618153868 9.990000e-86 327
38 TraesCS2A01G170200 chr1D 88.476 269 20 5 2794 3052 69116532 69116265 7.780000e-82 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G170200 chr2A 125250440 125254169 3729 True 6889.000000 6889 100.000000 1 3730 1 chr2A.!!$R1 3729
1 TraesCS2A01G170200 chr2A 125458592 125459448 856 True 335.500000 344 90.390000 1331 2131 2 chr2A.!!$R2 800
2 TraesCS2A01G170200 chr2B 174591361 174593911 2550 True 1452.500000 2097 88.274000 878 3721 2 chr2B.!!$R2 2843
3 TraesCS2A01G170200 chr2B 174662675 174663999 1324 True 432.000000 516 83.899000 1287 2660 2 chr2B.!!$R3 1373
4 TraesCS2A01G170200 chr2D 501665439 501666272 833 False 1188.000000 1188 92.244000 1 849 1 chr2D.!!$F2 848
5 TraesCS2A01G170200 chr2D 121059183 121061854 2671 True 1163.666667 2095 90.889333 851 3727 3 chr2D.!!$R1 2876
6 TraesCS2A01G170200 chr2D 121354419 121356109 1690 True 520.500000 608 81.035500 1098 2652 2 chr2D.!!$R2 1554
7 TraesCS2A01G170200 chr1A 33114363 33115204 841 True 1251.000000 1251 93.420000 1 849 1 chr1A.!!$R1 848
8 TraesCS2A01G170200 chr3D 330685215 330686059 844 False 1212.000000 1212 92.506000 1 851 1 chr3D.!!$F2 850
9 TraesCS2A01G170200 chrUn 283563624 283564466 842 False 1199.000000 1199 92.281000 1 851 1 chrUn.!!$F1 850
10 TraesCS2A01G170200 chrUn 283562385 283563227 842 True 1194.000000 1194 92.164000 1 851 1 chrUn.!!$R1 850
11 TraesCS2A01G170200 chr5A 203437274 203438101 827 True 1186.000000 1186 92.473000 12 845 1 chr5A.!!$R2 833
12 TraesCS2A01G170200 chr4A 176786731 176787571 840 False 1162.000000 1162 91.549000 1 849 1 chr4A.!!$F1 848
13 TraesCS2A01G170200 chr4A 415867048 415867887 839 True 1123.000000 1123 90.845000 1 845 1 chr4A.!!$R1 844
14 TraesCS2A01G170200 chr3A 53048139 53048967 828 True 1131.000000 1131 91.135000 1 845 1 chr3A.!!$R1 844
15 TraesCS2A01G170200 chr4B 449930565 449931393 828 True 1098.000000 1098 90.595000 1 833 1 chr4B.!!$R1 832
16 TraesCS2A01G170200 chr5D 539441478 539442162 684 True 1046.000000 1046 94.092000 1 693 1 chr5D.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 291 0.392461 TCCACTTCGGGCTATTGTGC 60.392 55.0 0.00 0.0 34.36 4.57 F
1581 1631 0.315886 ACGTACGCACAACAGGATCA 59.684 50.0 16.72 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 1673 0.298707 CGAATGATTCTGTCACGCGG 59.701 55.0 12.47 0.0 40.28 6.46 R
2791 3102 0.400213 AAACTGTTGGAGATGCCCGA 59.600 50.0 0.00 0.0 34.97 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.936547 CTACTTCGGATGCTGCTTTCC 59.063 52.381 10.87 10.87 0.00 3.13
31 32 1.747355 CTTCGGATGCTGCTTTCCATT 59.253 47.619 18.04 0.00 31.99 3.16
81 82 1.340211 ACTCTGACTCGACCGGAGATT 60.340 52.381 20.02 0.59 46.23 2.40
246 248 1.393603 CTACTCCGATGCAGACTGGA 58.606 55.000 4.26 0.73 0.00 3.86
289 291 0.392461 TCCACTTCGGGCTATTGTGC 60.392 55.000 0.00 0.00 34.36 4.57
341 343 4.016706 AAGCGGCAGCCTACGGTT 62.017 61.111 10.54 5.48 46.67 4.44
342 344 3.546714 AAGCGGCAGCCTACGGTTT 62.547 57.895 10.54 0.00 46.97 3.27
343 345 3.053896 GCGGCAGCCTACGGTTTT 61.054 61.111 10.54 0.00 37.42 2.43
493 495 1.153127 CTCGGCGGTCTACCTCTCT 60.153 63.158 7.21 0.00 0.00 3.10
631 633 1.347707 GCCGATATCATGACCAAGGGA 59.652 52.381 0.00 0.00 0.00 4.20
642 644 1.152963 CCAAGGGATTGCCTACGGG 60.153 63.158 0.00 0.00 0.00 5.28
657 659 1.227031 CGGGCTACGGCGTCATTTA 60.227 57.895 19.21 0.00 39.81 1.40
758 769 0.689745 TGTGTATTAGGCCCGCCTCT 60.690 55.000 12.53 3.72 44.43 3.69
814 825 9.639601 CCATCTTTGTACATCATATATACGTGT 57.360 33.333 0.00 0.00 0.00 4.49
857 868 1.261354 CGTGCAATCATACACCATCCG 59.739 52.381 0.00 0.00 33.09 4.18
887 898 3.056328 GCTTCTTGGACCACGCCC 61.056 66.667 0.00 0.00 0.00 6.13
915 926 1.285950 GCGAAACCTGCCCAAACTC 59.714 57.895 0.00 0.00 0.00 3.01
917 928 1.247567 CGAAACCTGCCCAAACTCAT 58.752 50.000 0.00 0.00 0.00 2.90
950 961 0.678950 CAAAGGTGCAAACCCCGATT 59.321 50.000 0.00 0.00 0.00 3.34
983 994 4.525487 TCAGGATAAGTACAGTTCAACCGT 59.475 41.667 0.00 0.00 0.00 4.83
984 995 4.625742 CAGGATAAGTACAGTTCAACCGTG 59.374 45.833 0.00 0.00 0.00 4.94
985 996 3.370061 GGATAAGTACAGTTCAACCGTGC 59.630 47.826 0.00 0.00 0.00 5.34
986 997 2.614829 AAGTACAGTTCAACCGTGCT 57.385 45.000 0.00 0.00 0.00 4.40
987 998 3.738830 AAGTACAGTTCAACCGTGCTA 57.261 42.857 0.00 0.00 0.00 3.49
988 999 3.955650 AGTACAGTTCAACCGTGCTAT 57.044 42.857 0.00 0.00 0.00 2.97
989 1000 4.267349 AGTACAGTTCAACCGTGCTATT 57.733 40.909 0.00 0.00 0.00 1.73
990 1001 4.243270 AGTACAGTTCAACCGTGCTATTC 58.757 43.478 0.00 0.00 0.00 1.75
991 1002 2.423577 ACAGTTCAACCGTGCTATTCC 58.576 47.619 0.00 0.00 0.00 3.01
992 1003 1.393539 CAGTTCAACCGTGCTATTCCG 59.606 52.381 0.00 0.00 0.00 4.30
1271 1303 0.600255 AGTCGTTCGTTCCTTGCCAG 60.600 55.000 0.00 0.00 0.00 4.85
1272 1304 0.878961 GTCGTTCGTTCCTTGCCAGT 60.879 55.000 0.00 0.00 0.00 4.00
1581 1631 0.315886 ACGTACGCACAACAGGATCA 59.684 50.000 16.72 0.00 0.00 2.92
1658 1719 5.173673 CCACGAACAATCATTTCAACTGTTG 59.826 40.000 14.24 14.24 30.62 3.33
1775 2005 0.318445 AGGTTCGGTTCGTCTTCGTG 60.318 55.000 0.00 0.00 38.33 4.35
1777 2007 1.203065 GTTCGGTTCGTCTTCGTGTT 58.797 50.000 0.00 0.00 38.33 3.32
1778 2008 1.188791 GTTCGGTTCGTCTTCGTGTTC 59.811 52.381 0.00 0.00 38.33 3.18
1785 2015 0.091344 CGTCTTCGTGTTCATCGTGC 59.909 55.000 0.00 0.00 0.00 5.34
1823 2054 2.479730 CCTGTGGCTGTACGTACTGATC 60.480 54.545 29.87 21.49 0.00 2.92
1828 2059 2.850647 GGCTGTACGTACTGATCGTTTC 59.149 50.000 29.87 13.86 41.72 2.78
1829 2060 2.850647 GCTGTACGTACTGATCGTTTCC 59.149 50.000 29.87 10.68 41.72 3.13
1832 2063 0.171903 ACGTACTGATCGTTTCCCCG 59.828 55.000 0.00 0.00 38.38 5.73
2024 2255 3.362797 TCGCGCTCGACAACCTCT 61.363 61.111 5.56 0.00 40.21 3.69
2123 2354 0.459237 CGCCCTGCACTTCACTCTAG 60.459 60.000 0.00 0.00 0.00 2.43
2193 2456 2.031516 CACGAGGCTGTGGCTGAAG 61.032 63.158 0.00 0.00 38.98 3.02
2304 2567 2.170012 TCGCCCTTATCCAGGTTACT 57.830 50.000 0.00 0.00 42.02 2.24
2305 2568 3.317455 TCGCCCTTATCCAGGTTACTA 57.683 47.619 0.00 0.00 42.02 1.82
2331 2606 0.109342 ACCTCAGCTCACCAACTTGG 59.891 55.000 6.24 6.24 45.02 3.61
2334 2609 2.237143 CCTCAGCTCACCAACTTGGATA 59.763 50.000 15.14 1.14 40.96 2.59
2335 2610 3.265791 CTCAGCTCACCAACTTGGATAC 58.734 50.000 15.14 1.37 40.96 2.24
2336 2611 2.027192 TCAGCTCACCAACTTGGATACC 60.027 50.000 15.14 0.73 40.96 2.73
2337 2612 1.066143 AGCTCACCAACTTGGATACCG 60.066 52.381 15.14 0.00 40.96 4.02
2338 2613 1.338769 GCTCACCAACTTGGATACCGT 60.339 52.381 15.14 0.00 40.96 4.83
2339 2614 2.093869 GCTCACCAACTTGGATACCGTA 60.094 50.000 15.14 0.00 40.96 4.02
2344 2619 2.277084 CAACTTGGATACCGTACCAGC 58.723 52.381 0.00 0.00 37.48 4.85
2346 2621 1.755380 ACTTGGATACCGTACCAGCTC 59.245 52.381 0.00 0.00 37.48 4.09
2349 2624 2.394632 TGGATACCGTACCAGCTCAAT 58.605 47.619 0.00 0.00 0.00 2.57
2354 2629 3.454371 ACCGTACCAGCTCAATCATAC 57.546 47.619 0.00 0.00 0.00 2.39
2374 2685 1.129998 CTCTTGGTTGCTCAATCTGCG 59.870 52.381 0.00 0.00 0.00 5.18
2646 2957 2.435805 CAAGCTATCTCTGGCCAAGGTA 59.564 50.000 7.01 7.29 0.00 3.08
2661 2972 2.592993 GGTAGCACAGGCACAGGGA 61.593 63.158 0.00 0.00 44.61 4.20
2693 3004 3.946558 GCTTCTTCCTAGTTCCTAGACGA 59.053 47.826 0.00 0.00 36.26 4.20
2695 3006 5.506649 GCTTCTTCCTAGTTCCTAGACGATG 60.507 48.000 0.00 0.00 36.26 3.84
2696 3007 5.369409 TCTTCCTAGTTCCTAGACGATGA 57.631 43.478 0.00 0.00 36.26 2.92
2716 3027 1.972872 AGTTTCATCATCCATCGCCC 58.027 50.000 0.00 0.00 0.00 6.13
2719 3030 1.130777 TTCATCATCCATCGCCCTCA 58.869 50.000 0.00 0.00 0.00 3.86
2731 3042 5.997746 TCCATCGCCCTCAGAATAATAAAAG 59.002 40.000 0.00 0.00 0.00 2.27
2732 3043 5.765182 CCATCGCCCTCAGAATAATAAAAGT 59.235 40.000 0.00 0.00 0.00 2.66
2733 3044 6.073003 CCATCGCCCTCAGAATAATAAAAGTC 60.073 42.308 0.00 0.00 0.00 3.01
2734 3045 5.984725 TCGCCCTCAGAATAATAAAAGTCA 58.015 37.500 0.00 0.00 0.00 3.41
2735 3046 6.591935 TCGCCCTCAGAATAATAAAAGTCAT 58.408 36.000 0.00 0.00 0.00 3.06
2736 3047 6.706270 TCGCCCTCAGAATAATAAAAGTCATC 59.294 38.462 0.00 0.00 0.00 2.92
2737 3048 6.346919 CGCCCTCAGAATAATAAAAGTCATCG 60.347 42.308 0.00 0.00 0.00 3.84
2738 3049 6.073003 GCCCTCAGAATAATAAAAGTCATCGG 60.073 42.308 0.00 0.00 0.00 4.18
2740 3051 7.217200 CCTCAGAATAATAAAAGTCATCGGGA 58.783 38.462 0.00 0.00 0.00 5.14
2741 3052 7.715249 CCTCAGAATAATAAAAGTCATCGGGAA 59.285 37.037 0.00 0.00 0.00 3.97
2742 3053 9.277783 CTCAGAATAATAAAAGTCATCGGGAAT 57.722 33.333 0.00 0.00 0.00 3.01
2743 3054 9.273016 TCAGAATAATAAAAGTCATCGGGAATC 57.727 33.333 0.00 0.00 0.00 2.52
2744 3055 9.277783 CAGAATAATAAAAGTCATCGGGAATCT 57.722 33.333 0.00 0.00 0.00 2.40
2745 3056 9.495572 AGAATAATAAAAGTCATCGGGAATCTC 57.504 33.333 0.00 0.00 0.00 2.75
2791 3102 0.949397 CACTGTGTCATGCACTGCTT 59.051 50.000 19.41 0.00 46.74 3.91
2793 3104 2.468964 ACTGTGTCATGCACTGCTTCG 61.469 52.381 19.41 7.38 46.74 3.79
2794 3105 1.499056 GTGTCATGCACTGCTTCGG 59.501 57.895 11.51 0.00 44.41 4.30
2795 3106 1.672030 TGTCATGCACTGCTTCGGG 60.672 57.895 1.98 0.00 0.00 5.14
2796 3107 2.747460 TCATGCACTGCTTCGGGC 60.747 61.111 1.98 0.00 42.22 6.13
2805 3116 3.502572 GCTTCGGGCATCTCCAAC 58.497 61.111 0.00 0.00 41.35 3.77
2806 3117 1.377202 GCTTCGGGCATCTCCAACA 60.377 57.895 0.00 0.00 41.35 3.33
2807 3118 1.372087 GCTTCGGGCATCTCCAACAG 61.372 60.000 0.00 0.00 41.35 3.16
2808 3119 0.036010 CTTCGGGCATCTCCAACAGT 60.036 55.000 0.00 0.00 36.21 3.55
2809 3120 0.400213 TTCGGGCATCTCCAACAGTT 59.600 50.000 0.00 0.00 36.21 3.16
2810 3121 0.400213 TCGGGCATCTCCAACAGTTT 59.600 50.000 0.00 0.00 36.21 2.66
2811 3122 1.626321 TCGGGCATCTCCAACAGTTTA 59.374 47.619 0.00 0.00 36.21 2.01
2812 3123 2.238646 TCGGGCATCTCCAACAGTTTAT 59.761 45.455 0.00 0.00 36.21 1.40
2813 3124 3.452990 TCGGGCATCTCCAACAGTTTATA 59.547 43.478 0.00 0.00 36.21 0.98
2814 3125 4.102524 TCGGGCATCTCCAACAGTTTATAT 59.897 41.667 0.00 0.00 36.21 0.86
2815 3126 4.214119 CGGGCATCTCCAACAGTTTATATG 59.786 45.833 0.00 0.00 36.21 1.78
2816 3127 5.133221 GGGCATCTCCAACAGTTTATATGT 58.867 41.667 0.00 0.00 36.21 2.29
2817 3128 5.594317 GGGCATCTCCAACAGTTTATATGTT 59.406 40.000 0.00 0.00 41.47 2.71
2818 3129 6.770785 GGGCATCTCCAACAGTTTATATGTTA 59.229 38.462 0.00 0.00 38.80 2.41
2819 3130 7.041098 GGGCATCTCCAACAGTTTATATGTTAG 60.041 40.741 0.00 0.00 38.80 2.34
2820 3131 7.355778 GCATCTCCAACAGTTTATATGTTAGC 58.644 38.462 0.00 0.00 38.80 3.09
2821 3132 7.227512 GCATCTCCAACAGTTTATATGTTAGCT 59.772 37.037 0.00 0.00 38.80 3.32
2822 3133 9.113838 CATCTCCAACAGTTTATATGTTAGCTT 57.886 33.333 0.00 0.00 38.80 3.74
2823 3134 8.492673 TCTCCAACAGTTTATATGTTAGCTTG 57.507 34.615 0.00 0.00 38.80 4.01
2824 3135 8.100791 TCTCCAACAGTTTATATGTTAGCTTGT 58.899 33.333 0.00 0.00 38.80 3.16
2825 3136 8.630054 TCCAACAGTTTATATGTTAGCTTGTT 57.370 30.769 0.00 0.00 38.80 2.83
2826 3137 8.511321 TCCAACAGTTTATATGTTAGCTTGTTG 58.489 33.333 10.92 10.92 38.80 3.33
2827 3138 7.754924 CCAACAGTTTATATGTTAGCTTGTTGG 59.245 37.037 18.81 18.81 43.13 3.77
2828 3139 7.996098 ACAGTTTATATGTTAGCTTGTTGGT 57.004 32.000 0.00 0.00 0.00 3.67
2829 3140 9.509956 AACAGTTTATATGTTAGCTTGTTGGTA 57.490 29.630 0.00 0.00 39.06 3.25
2830 3141 9.509956 ACAGTTTATATGTTAGCTTGTTGGTAA 57.490 29.630 0.00 0.00 36.42 2.85
2838 3149 6.626302 TGTTAGCTTGTTGGTAAAATATGGC 58.374 36.000 0.00 0.00 39.88 4.40
2839 3150 6.209589 TGTTAGCTTGTTGGTAAAATATGGCA 59.790 34.615 0.00 0.00 39.88 4.92
2840 3151 5.937975 AGCTTGTTGGTAAAATATGGCAT 57.062 34.783 4.88 4.88 0.00 4.40
2841 3152 5.663456 AGCTTGTTGGTAAAATATGGCATG 58.337 37.500 10.98 0.00 0.00 4.06
2842 3153 5.187576 AGCTTGTTGGTAAAATATGGCATGT 59.812 36.000 10.98 0.00 0.00 3.21
2843 3154 5.519927 GCTTGTTGGTAAAATATGGCATGTC 59.480 40.000 10.98 0.00 0.00 3.06
2844 3155 6.596309 TTGTTGGTAAAATATGGCATGTCA 57.404 33.333 10.98 0.60 0.00 3.58
2845 3156 6.788598 TGTTGGTAAAATATGGCATGTCAT 57.211 33.333 18.34 18.34 0.00 3.06
2846 3157 6.804677 TGTTGGTAAAATATGGCATGTCATC 58.195 36.000 17.77 0.50 0.00 2.92
2847 3158 6.379417 TGTTGGTAAAATATGGCATGTCATCA 59.621 34.615 17.77 3.63 0.00 3.07
2848 3159 7.093596 TGTTGGTAAAATATGGCATGTCATCAA 60.094 33.333 17.77 9.99 0.00 2.57
2849 3160 6.804677 TGGTAAAATATGGCATGTCATCAAC 58.195 36.000 17.77 8.69 0.00 3.18
2850 3161 6.183360 TGGTAAAATATGGCATGTCATCAACC 60.183 38.462 17.77 16.91 0.00 3.77
2851 3162 5.936187 AAAATATGGCATGTCATCAACCA 57.064 34.783 17.77 1.76 37.93 3.67
2852 3163 5.936187 AAATATGGCATGTCATCAACCAA 57.064 34.783 17.77 0.00 37.39 3.67
2853 3164 4.924305 ATATGGCATGTCATCAACCAAC 57.076 40.909 17.77 0.00 37.39 3.77
2854 3165 1.992538 TGGCATGTCATCAACCAACA 58.007 45.000 0.00 0.00 33.09 3.33
2855 3166 2.527497 TGGCATGTCATCAACCAACAT 58.473 42.857 0.00 0.00 33.09 2.71
2856 3167 2.492881 TGGCATGTCATCAACCAACATC 59.507 45.455 0.00 0.00 33.09 3.06
2857 3168 2.756760 GGCATGTCATCAACCAACATCT 59.243 45.455 0.00 0.00 31.43 2.90
2858 3169 3.194116 GGCATGTCATCAACCAACATCTT 59.806 43.478 0.00 0.00 31.43 2.40
2859 3170 4.398988 GGCATGTCATCAACCAACATCTTA 59.601 41.667 0.00 0.00 31.43 2.10
2860 3171 5.105797 GGCATGTCATCAACCAACATCTTAA 60.106 40.000 0.00 0.00 31.43 1.85
2861 3172 5.801947 GCATGTCATCAACCAACATCTTAAC 59.198 40.000 0.00 0.00 31.43 2.01
2862 3173 6.570186 GCATGTCATCAACCAACATCTTAACA 60.570 38.462 0.00 0.00 31.43 2.41
2863 3174 7.541162 CATGTCATCAACCAACATCTTAACAT 58.459 34.615 0.00 0.00 31.43 2.71
2864 3175 8.676401 CATGTCATCAACCAACATCTTAACATA 58.324 33.333 0.00 0.00 31.43 2.29
2865 3176 8.039603 TGTCATCAACCAACATCTTAACATAC 57.960 34.615 0.00 0.00 0.00 2.39
2866 3177 7.663493 TGTCATCAACCAACATCTTAACATACA 59.337 33.333 0.00 0.00 0.00 2.29
2867 3178 8.511321 GTCATCAACCAACATCTTAACATACAA 58.489 33.333 0.00 0.00 0.00 2.41
2868 3179 8.511321 TCATCAACCAACATCTTAACATACAAC 58.489 33.333 0.00 0.00 0.00 3.32
2869 3180 7.809546 TCAACCAACATCTTAACATACAACA 57.190 32.000 0.00 0.00 0.00 3.33
2870 3181 8.226819 TCAACCAACATCTTAACATACAACAA 57.773 30.769 0.00 0.00 0.00 2.83
2871 3182 8.132362 TCAACCAACATCTTAACATACAACAAC 58.868 33.333 0.00 0.00 0.00 3.32
2872 3183 7.817418 ACCAACATCTTAACATACAACAACT 57.183 32.000 0.00 0.00 0.00 3.16
2873 3184 7.648142 ACCAACATCTTAACATACAACAACTG 58.352 34.615 0.00 0.00 0.00 3.16
2874 3185 7.284489 ACCAACATCTTAACATACAACAACTGT 59.716 33.333 0.00 0.00 42.47 3.55
2875 3186 8.779303 CCAACATCTTAACATACAACAACTGTA 58.221 33.333 0.00 0.00 44.65 2.74
2887 3198 6.613755 ACAACAACTGTATGTAGTTTGTCC 57.386 37.500 0.00 0.00 38.78 4.02
2888 3199 6.116806 ACAACAACTGTATGTAGTTTGTCCA 58.883 36.000 0.00 0.00 38.78 4.02
2889 3200 6.600032 ACAACAACTGTATGTAGTTTGTCCAA 59.400 34.615 0.00 0.00 38.78 3.53
2890 3201 7.284489 ACAACAACTGTATGTAGTTTGTCCAAT 59.716 33.333 0.00 0.00 38.78 3.16
2891 3202 8.779303 CAACAACTGTATGTAGTTTGTCCAATA 58.221 33.333 0.00 0.00 38.78 1.90
2892 3203 8.547967 ACAACTGTATGTAGTTTGTCCAATAG 57.452 34.615 0.00 0.00 38.78 1.73
2893 3204 7.606456 ACAACTGTATGTAGTTTGTCCAATAGG 59.394 37.037 0.00 0.00 38.78 2.57
2894 3205 7.490657 ACTGTATGTAGTTTGTCCAATAGGA 57.509 36.000 0.00 0.00 43.21 2.94
2895 3206 8.548877 AACTGTATGTAGTTTGTCCAATAGGAT 58.451 33.333 0.00 0.00 41.05 3.24
2929 3240 9.771534 AATAAATAAGGTGCTCTCTCATTCTAC 57.228 33.333 0.00 0.00 0.00 2.59
2930 3241 6.798427 AATAAGGTGCTCTCTCATTCTACA 57.202 37.500 0.00 0.00 0.00 2.74
2931 3242 6.992664 ATAAGGTGCTCTCTCATTCTACAT 57.007 37.500 0.00 0.00 0.00 2.29
2932 3243 5.690464 AAGGTGCTCTCTCATTCTACATT 57.310 39.130 0.00 0.00 0.00 2.71
2933 3244 5.021033 AGGTGCTCTCTCATTCTACATTG 57.979 43.478 0.00 0.00 0.00 2.82
2934 3245 4.713814 AGGTGCTCTCTCATTCTACATTGA 59.286 41.667 0.00 0.00 0.00 2.57
2935 3246 5.188555 AGGTGCTCTCTCATTCTACATTGAA 59.811 40.000 0.00 0.00 0.00 2.69
2936 3247 5.523188 GGTGCTCTCTCATTCTACATTGAAG 59.477 44.000 0.00 0.00 0.00 3.02
2937 3248 5.006552 GTGCTCTCTCATTCTACATTGAAGC 59.993 44.000 0.00 0.00 0.00 3.86
2938 3249 5.105023 TGCTCTCTCATTCTACATTGAAGCT 60.105 40.000 0.00 0.00 0.00 3.74
2939 3250 5.816777 GCTCTCTCATTCTACATTGAAGCTT 59.183 40.000 0.00 0.00 0.00 3.74
2940 3251 6.238157 GCTCTCTCATTCTACATTGAAGCTTG 60.238 42.308 2.10 0.00 0.00 4.01
2941 3252 6.705302 TCTCTCATTCTACATTGAAGCTTGT 58.295 36.000 2.10 0.00 0.00 3.16
2942 3253 6.592994 TCTCTCATTCTACATTGAAGCTTGTG 59.407 38.462 2.10 2.35 0.00 3.33
2943 3254 5.122869 TCTCATTCTACATTGAAGCTTGTGC 59.877 40.000 2.10 0.00 40.05 4.57
2944 3255 4.761227 TCATTCTACATTGAAGCTTGTGCA 59.239 37.500 2.10 0.00 42.74 4.57
2945 3256 5.241285 TCATTCTACATTGAAGCTTGTGCAA 59.759 36.000 2.10 2.00 42.74 4.08
2946 3257 4.754372 TCTACATTGAAGCTTGTGCAAG 57.246 40.909 2.10 7.51 42.74 4.01
2947 3258 2.806608 ACATTGAAGCTTGTGCAAGG 57.193 45.000 2.10 6.59 42.74 3.61
2952 3263 4.664062 AGCTTGTGCAAGGTGTGT 57.336 50.000 14.75 0.00 46.17 3.72
2953 3264 2.886382 AGCTTGTGCAAGGTGTGTT 58.114 47.368 14.75 0.00 46.17 3.32
2954 3265 0.457035 AGCTTGTGCAAGGTGTGTTG 59.543 50.000 14.75 0.00 46.17 3.33
2955 3266 0.528249 GCTTGTGCAAGGTGTGTTGG 60.528 55.000 13.07 0.00 38.80 3.77
2956 3267 0.817013 CTTGTGCAAGGTGTGTTGGT 59.183 50.000 4.13 0.00 34.87 3.67
2957 3268 1.204467 CTTGTGCAAGGTGTGTTGGTT 59.796 47.619 4.13 0.00 34.87 3.67
2958 3269 0.814457 TGTGCAAGGTGTGTTGGTTC 59.186 50.000 0.00 0.00 0.00 3.62
2959 3270 0.814457 GTGCAAGGTGTGTTGGTTCA 59.186 50.000 0.00 0.00 0.00 3.18
2960 3271 1.408702 GTGCAAGGTGTGTTGGTTCAT 59.591 47.619 0.00 0.00 0.00 2.57
2961 3272 1.408340 TGCAAGGTGTGTTGGTTCATG 59.592 47.619 0.00 0.00 0.00 3.07
2962 3273 1.408702 GCAAGGTGTGTTGGTTCATGT 59.591 47.619 0.00 0.00 0.00 3.21
2963 3274 2.621055 GCAAGGTGTGTTGGTTCATGTA 59.379 45.455 0.00 0.00 0.00 2.29
2964 3275 3.550030 GCAAGGTGTGTTGGTTCATGTAC 60.550 47.826 0.00 0.00 0.00 2.90
2965 3276 3.569194 AGGTGTGTTGGTTCATGTACA 57.431 42.857 0.00 0.00 0.00 2.90
2966 3277 4.098914 AGGTGTGTTGGTTCATGTACAT 57.901 40.909 1.41 1.41 0.00 2.29
2967 3278 5.235850 AGGTGTGTTGGTTCATGTACATA 57.764 39.130 8.32 0.00 0.00 2.29
2968 3279 5.001232 AGGTGTGTTGGTTCATGTACATAC 58.999 41.667 8.32 4.04 33.53 2.39
2969 3280 4.757657 GGTGTGTTGGTTCATGTACATACA 59.242 41.667 8.32 5.41 40.98 2.29
2970 3281 5.239744 GGTGTGTTGGTTCATGTACATACAA 59.760 40.000 8.32 8.86 39.99 2.41
2971 3282 6.140110 GTGTGTTGGTTCATGTACATACAAC 58.860 40.000 23.71 23.71 39.99 3.32
2972 3283 5.239744 TGTGTTGGTTCATGTACATACAACC 59.760 40.000 27.58 27.58 39.99 3.77
2973 3284 5.472137 GTGTTGGTTCATGTACATACAACCT 59.528 40.000 30.80 4.24 39.99 3.50
2974 3285 6.016610 GTGTTGGTTCATGTACATACAACCTT 60.017 38.462 30.80 3.60 39.99 3.50
2975 3286 6.205853 TGTTGGTTCATGTACATACAACCTTC 59.794 38.462 30.80 25.51 39.99 3.46
2976 3287 5.250200 TGGTTCATGTACATACAACCTTCC 58.750 41.667 30.80 16.91 39.99 3.46
2977 3288 5.013704 TGGTTCATGTACATACAACCTTCCT 59.986 40.000 30.80 1.91 39.99 3.36
2978 3289 5.585047 GGTTCATGTACATACAACCTTCCTC 59.415 44.000 27.27 11.06 39.99 3.71
2979 3290 6.407202 GTTCATGTACATACAACCTTCCTCT 58.593 40.000 8.32 0.00 39.99 3.69
2980 3291 6.222038 TCATGTACATACAACCTTCCTCTC 57.778 41.667 8.32 0.00 39.99 3.20
2981 3292 5.958380 TCATGTACATACAACCTTCCTCTCT 59.042 40.000 8.32 0.00 39.99 3.10
2982 3293 6.440647 TCATGTACATACAACCTTCCTCTCTT 59.559 38.462 8.32 0.00 39.99 2.85
2983 3294 6.681729 TGTACATACAACCTTCCTCTCTTT 57.318 37.500 0.00 0.00 32.40 2.52
2984 3295 6.698380 TGTACATACAACCTTCCTCTCTTTC 58.302 40.000 0.00 0.00 32.40 2.62
2985 3296 5.167303 ACATACAACCTTCCTCTCTTTCC 57.833 43.478 0.00 0.00 0.00 3.13
2986 3297 4.846940 ACATACAACCTTCCTCTCTTTCCT 59.153 41.667 0.00 0.00 0.00 3.36
2987 3298 5.046231 ACATACAACCTTCCTCTCTTTCCTC 60.046 44.000 0.00 0.00 0.00 3.71
2988 3299 3.318313 ACAACCTTCCTCTCTTTCCTCA 58.682 45.455 0.00 0.00 0.00 3.86
2989 3300 3.913163 ACAACCTTCCTCTCTTTCCTCAT 59.087 43.478 0.00 0.00 0.00 2.90
2990 3301 4.352298 ACAACCTTCCTCTCTTTCCTCATT 59.648 41.667 0.00 0.00 0.00 2.57
2991 3302 5.163045 ACAACCTTCCTCTCTTTCCTCATTT 60.163 40.000 0.00 0.00 0.00 2.32
2992 3303 6.044404 ACAACCTTCCTCTCTTTCCTCATTTA 59.956 38.462 0.00 0.00 0.00 1.40
2993 3304 6.899892 ACCTTCCTCTCTTTCCTCATTTAT 57.100 37.500 0.00 0.00 0.00 1.40
2994 3305 7.277405 ACCTTCCTCTCTTTCCTCATTTATT 57.723 36.000 0.00 0.00 0.00 1.40
2995 3306 7.115414 ACCTTCCTCTCTTTCCTCATTTATTG 58.885 38.462 0.00 0.00 0.00 1.90
2996 3307 7.115414 CCTTCCTCTCTTTCCTCATTTATTGT 58.885 38.462 0.00 0.00 0.00 2.71
2997 3308 8.267894 CCTTCCTCTCTTTCCTCATTTATTGTA 58.732 37.037 0.00 0.00 0.00 2.41
2998 3309 9.844257 CTTCCTCTCTTTCCTCATTTATTGTAT 57.156 33.333 0.00 0.00 0.00 2.29
2999 3310 9.618890 TTCCTCTCTTTCCTCATTTATTGTATG 57.381 33.333 0.00 0.00 0.00 2.39
3000 3311 8.992349 TCCTCTCTTTCCTCATTTATTGTATGA 58.008 33.333 0.00 0.00 0.00 2.15
3001 3312 9.790344 CCTCTCTTTCCTCATTTATTGTATGAT 57.210 33.333 0.00 0.00 32.00 2.45
3024 3335 9.850198 TGATACATCATCAAAAATCCTATGTGA 57.150 29.630 0.00 0.00 40.80 3.58
3026 3337 7.943079 ACATCATCAAAAATCCTATGTGACA 57.057 32.000 0.00 0.00 0.00 3.58
3027 3338 8.352137 ACATCATCAAAAATCCTATGTGACAA 57.648 30.769 0.00 0.00 0.00 3.18
3028 3339 8.805175 ACATCATCAAAAATCCTATGTGACAAA 58.195 29.630 0.00 0.00 0.00 2.83
3029 3340 9.297586 CATCATCAAAAATCCTATGTGACAAAG 57.702 33.333 0.00 0.00 0.00 2.77
3030 3341 8.408043 TCATCAAAAATCCTATGTGACAAAGT 57.592 30.769 0.00 0.00 0.00 2.66
3031 3342 8.514594 TCATCAAAAATCCTATGTGACAAAGTC 58.485 33.333 0.00 0.00 0.00 3.01
3032 3343 8.517878 CATCAAAAATCCTATGTGACAAAGTCT 58.482 33.333 0.00 0.00 33.15 3.24
3033 3344 9.739276 ATCAAAAATCCTATGTGACAAAGTCTA 57.261 29.630 0.00 0.00 33.15 2.59
3034 3345 8.999431 TCAAAAATCCTATGTGACAAAGTCTAC 58.001 33.333 0.00 0.00 33.15 2.59
3035 3346 7.923414 AAAATCCTATGTGACAAAGTCTACC 57.077 36.000 0.00 0.00 33.15 3.18
3036 3347 6.620877 AATCCTATGTGACAAAGTCTACCA 57.379 37.500 0.00 0.00 33.15 3.25
3037 3348 6.620877 ATCCTATGTGACAAAGTCTACCAA 57.379 37.500 0.00 0.00 33.15 3.67
3038 3349 5.790593 TCCTATGTGACAAAGTCTACCAAC 58.209 41.667 0.00 0.00 33.15 3.77
3039 3350 5.305902 TCCTATGTGACAAAGTCTACCAACA 59.694 40.000 0.00 0.00 33.15 3.33
3040 3351 5.995282 CCTATGTGACAAAGTCTACCAACAA 59.005 40.000 0.00 0.00 33.15 2.83
3041 3352 5.751243 ATGTGACAAAGTCTACCAACAAC 57.249 39.130 0.00 0.00 33.15 3.32
3042 3353 4.839121 TGTGACAAAGTCTACCAACAACT 58.161 39.130 0.00 0.00 33.15 3.16
3043 3354 5.979993 TGTGACAAAGTCTACCAACAACTA 58.020 37.500 0.00 0.00 33.15 2.24
3044 3355 6.046593 TGTGACAAAGTCTACCAACAACTAG 58.953 40.000 0.00 0.00 33.15 2.57
3045 3356 5.050295 GTGACAAAGTCTACCAACAACTAGC 60.050 44.000 0.00 0.00 33.15 3.42
3046 3357 5.163343 TGACAAAGTCTACCAACAACTAGCT 60.163 40.000 0.00 0.00 33.15 3.32
3047 3358 5.681639 ACAAAGTCTACCAACAACTAGCTT 58.318 37.500 0.00 0.00 0.00 3.74
3048 3359 6.823497 ACAAAGTCTACCAACAACTAGCTTA 58.177 36.000 0.00 0.00 0.00 3.09
3049 3360 6.704937 ACAAAGTCTACCAACAACTAGCTTAC 59.295 38.462 0.00 0.00 0.00 2.34
3050 3361 6.415206 AAGTCTACCAACAACTAGCTTACA 57.585 37.500 0.00 0.00 0.00 2.41
3051 3362 6.415206 AGTCTACCAACAACTAGCTTACAA 57.585 37.500 0.00 0.00 0.00 2.41
3052 3363 6.456501 AGTCTACCAACAACTAGCTTACAAG 58.543 40.000 0.00 0.00 0.00 3.16
3053 3364 6.041751 AGTCTACCAACAACTAGCTTACAAGT 59.958 38.462 0.00 0.00 0.00 3.16
3054 3365 6.704937 GTCTACCAACAACTAGCTTACAAGTT 59.295 38.462 0.00 0.00 36.38 2.66
3055 3366 7.869429 GTCTACCAACAACTAGCTTACAAGTTA 59.131 37.037 0.00 0.00 34.23 2.24
3056 3367 6.856135 ACCAACAACTAGCTTACAAGTTAC 57.144 37.500 0.00 0.00 34.23 2.50
3057 3368 6.350906 ACCAACAACTAGCTTACAAGTTACA 58.649 36.000 0.00 0.00 34.23 2.41
3058 3369 6.824704 ACCAACAACTAGCTTACAAGTTACAA 59.175 34.615 0.00 0.00 34.23 2.41
3059 3370 7.130269 CCAACAACTAGCTTACAAGTTACAAC 58.870 38.462 0.00 0.00 34.23 3.32
3060 3371 6.856135 ACAACTAGCTTACAAGTTACAACC 57.144 37.500 0.00 0.00 34.23 3.77
3061 3372 6.350906 ACAACTAGCTTACAAGTTACAACCA 58.649 36.000 0.00 0.00 34.23 3.67
3062 3373 6.996282 ACAACTAGCTTACAAGTTACAACCAT 59.004 34.615 0.00 0.00 34.23 3.55
3063 3374 7.501225 ACAACTAGCTTACAAGTTACAACCATT 59.499 33.333 0.00 0.00 34.23 3.16
3064 3375 7.435068 ACTAGCTTACAAGTTACAACCATTG 57.565 36.000 0.00 0.00 0.00 2.82
3065 3376 7.221450 ACTAGCTTACAAGTTACAACCATTGA 58.779 34.615 0.00 0.00 0.00 2.57
3066 3377 6.952773 AGCTTACAAGTTACAACCATTGAA 57.047 33.333 0.00 0.00 0.00 2.69
3067 3378 6.970484 AGCTTACAAGTTACAACCATTGAAG 58.030 36.000 0.00 3.36 0.00 3.02
3068 3379 6.770785 AGCTTACAAGTTACAACCATTGAAGA 59.229 34.615 0.00 0.00 0.00 2.87
3069 3380 7.448469 AGCTTACAAGTTACAACCATTGAAGAT 59.552 33.333 0.00 0.00 0.00 2.40
3073 3384 3.763897 AGTTACAACCATTGAAGATGCCC 59.236 43.478 0.00 0.00 0.00 5.36
3093 3460 4.261825 GCCCTAAGCAGTCAGATAGTACTG 60.262 50.000 5.39 0.00 44.79 2.74
3114 3481 6.992063 CTGCTATCAGTTATGGTTTGAAGT 57.008 37.500 0.00 0.00 35.61 3.01
3116 3483 7.377766 TGCTATCAGTTATGGTTTGAAGTTC 57.622 36.000 0.00 0.00 0.00 3.01
3117 3484 6.939730 TGCTATCAGTTATGGTTTGAAGTTCA 59.060 34.615 0.08 0.08 0.00 3.18
3118 3485 7.119699 TGCTATCAGTTATGGTTTGAAGTTCAG 59.880 37.037 5.56 0.00 0.00 3.02
3144 3517 0.389948 AGACTCAAATGACCGACGGC 60.390 55.000 15.39 7.62 0.00 5.68
3253 3635 7.440556 AGTCCTATCAATCTCATGACAAATTCG 59.559 37.037 0.00 0.00 30.82 3.34
3324 3706 0.391130 TGTAGATGCGCCTCAACACC 60.391 55.000 15.26 0.00 0.00 4.16
3333 3715 0.868406 GCCTCAACACCGTTCTGAAG 59.132 55.000 0.00 0.00 0.00 3.02
3334 3716 1.540363 GCCTCAACACCGTTCTGAAGA 60.540 52.381 0.00 0.00 0.00 2.87
3406 3788 1.985473 TGCTCAGCAAAAGGTGATGT 58.015 45.000 0.00 0.00 44.32 3.06
3417 3799 5.409214 GCAAAAGGTGATGTGCAAAATACAT 59.591 36.000 0.00 0.00 36.97 2.29
3491 3875 1.442526 CTCGATGTCATGGCCTTGGC 61.443 60.000 16.04 16.04 0.00 4.52
3547 3931 1.203287 GCCATCTGGAAAACCAAGAGC 59.797 52.381 0.00 0.00 37.39 4.09
3556 3940 4.007659 GGAAAACCAAGAGCGGAAGATAA 58.992 43.478 0.00 0.00 0.00 1.75
3567 3951 6.115446 AGAGCGGAAGATAAAATCACAATGA 58.885 36.000 0.00 0.00 0.00 2.57
3634 4018 1.283029 TCAAATAGGCCAGCTCTGCTT 59.717 47.619 5.01 0.04 36.40 3.91
3636 4020 2.494870 CAAATAGGCCAGCTCTGCTTTT 59.505 45.455 5.01 1.44 36.40 2.27
3637 4021 3.652057 AATAGGCCAGCTCTGCTTTTA 57.348 42.857 5.01 0.00 36.40 1.52
3678 4062 4.103365 AGCTGAGACTCATAGACAAACG 57.897 45.455 5.42 0.00 0.00 3.60
3699 4083 9.210426 CAAACGACTATAATTAACAACATCAGC 57.790 33.333 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.036732 TGGAAAGCAGCATCCGAAGT 59.963 50.000 11.50 0.00 38.63 3.01
28 29 2.609459 GAGCACCAACGATAGACCAATG 59.391 50.000 0.00 0.00 41.38 2.82
31 32 1.476891 GAGAGCACCAACGATAGACCA 59.523 52.381 0.00 0.00 41.38 4.02
81 82 1.448365 CTGCTGCACGGCATACTGA 60.448 57.895 4.30 0.00 41.63 3.41
289 291 2.752030 TGAGTGAGGGTCCAAGATAGG 58.248 52.381 0.00 0.00 0.00 2.57
341 343 2.483876 CTCAGCACTGGAACGAGAAAA 58.516 47.619 0.00 0.00 0.00 2.29
342 344 1.270305 CCTCAGCACTGGAACGAGAAA 60.270 52.381 0.00 0.00 0.00 2.52
343 345 0.318441 CCTCAGCACTGGAACGAGAA 59.682 55.000 0.00 0.00 0.00 2.87
493 495 0.463654 GATGATGCACCGGGTTAGCA 60.464 55.000 13.77 13.77 43.14 3.49
642 644 1.859080 CTCCTTAAATGACGCCGTAGC 59.141 52.381 0.00 0.00 0.00 3.58
643 645 3.160777 ACTCCTTAAATGACGCCGTAG 57.839 47.619 0.00 0.00 0.00 3.51
644 646 3.514645 GAACTCCTTAAATGACGCCGTA 58.485 45.455 0.00 0.00 0.00 4.02
645 647 2.344025 GAACTCCTTAAATGACGCCGT 58.656 47.619 0.00 0.00 0.00 5.68
646 648 1.664151 GGAACTCCTTAAATGACGCCG 59.336 52.381 0.00 0.00 0.00 6.46
647 649 1.664151 CGGAACTCCTTAAATGACGCC 59.336 52.381 0.00 0.00 0.00 5.68
648 650 1.664151 CCGGAACTCCTTAAATGACGC 59.336 52.381 0.00 0.00 0.00 5.19
657 659 0.178929 AGACTGGACCGGAACTCCTT 60.179 55.000 9.46 0.00 0.00 3.36
785 796 9.653287 CGTATATATGATGTACAAAGATGGGTT 57.347 33.333 0.00 0.00 0.00 4.11
814 825 7.368059 ACGATATATTGTTCTTCGTGCATAGA 58.632 34.615 0.00 0.00 41.09 1.98
828 839 6.934083 TGGTGTATGATTGCACGATATATTGT 59.066 34.615 0.00 0.00 39.15 2.71
873 884 3.691342 CGAGGGCGTGGTCCAAGA 61.691 66.667 9.22 0.00 0.00 3.02
907 918 1.103398 GCGGGATGGATGAGTTTGGG 61.103 60.000 0.00 0.00 0.00 4.12
908 919 1.439353 CGCGGGATGGATGAGTTTGG 61.439 60.000 0.00 0.00 0.00 3.28
909 920 1.439353 CCGCGGGATGGATGAGTTTG 61.439 60.000 20.10 0.00 0.00 2.93
933 944 0.966179 GAAATCGGGGTTTGCACCTT 59.034 50.000 0.00 0.00 43.65 3.50
950 961 2.398588 ACTTATCCTGAGCCGATGGAA 58.601 47.619 0.00 0.00 33.20 3.53
995 1006 4.729856 GGACTAACGCGGTGCCGT 62.730 66.667 7.07 0.00 44.41 5.68
996 1007 4.728102 TGGACTAACGCGGTGCCG 62.728 66.667 7.07 6.22 43.09 5.69
997 1008 2.813908 CTGGACTAACGCGGTGCC 60.814 66.667 7.07 6.20 0.00 5.01
1006 1038 1.833630 CTGGATGGAGTGCTGGACTAA 59.166 52.381 0.48 0.00 33.83 2.24
1229 1261 1.700186 CCTGGAGGAGGTTATTAGGCC 59.300 57.143 0.00 0.00 37.02 5.19
1271 1303 3.117046 GGCAAGATTACTCTAGCACGAC 58.883 50.000 0.00 0.00 0.00 4.34
1272 1304 2.223502 CGGCAAGATTACTCTAGCACGA 60.224 50.000 0.00 0.00 0.00 4.35
1567 1617 0.374758 CCGATTGATCCTGTTGTGCG 59.625 55.000 0.00 0.00 0.00 5.34
1612 1673 0.298707 CGAATGATTCTGTCACGCGG 59.701 55.000 12.47 0.00 40.28 6.46
1613 1674 0.992072 ACGAATGATTCTGTCACGCG 59.008 50.000 3.53 3.53 40.28 6.01
1614 1675 2.281762 GGTACGAATGATTCTGTCACGC 59.718 50.000 3.43 0.00 40.28 5.34
1658 1719 3.552068 CCACACCAACGGAGAAATTTTCC 60.552 47.826 5.52 1.03 0.00 3.13
1699 1855 3.382832 ACGGCCCTCCTCAACTCG 61.383 66.667 0.00 0.00 0.00 4.18
1823 2054 1.670083 GGAGGAACACGGGGAAACG 60.670 63.158 0.00 0.00 40.31 3.60
1828 2059 2.032071 GTGTGGAGGAACACGGGG 59.968 66.667 0.00 0.00 44.21 5.73
1832 2063 2.668550 GCCCGTGTGGAGGAACAC 60.669 66.667 0.00 0.00 45.70 3.32
2142 2386 2.873245 GCACCTCACAGAATTGAGCTGA 60.873 50.000 0.00 0.00 41.61 4.26
2304 2567 2.041216 TGGTGAGCTGAGGTGTAGACTA 59.959 50.000 0.00 0.00 0.00 2.59
2305 2568 1.203063 TGGTGAGCTGAGGTGTAGACT 60.203 52.381 0.00 0.00 0.00 3.24
2331 2606 3.728076 TGATTGAGCTGGTACGGTATC 57.272 47.619 0.00 0.00 36.83 2.24
2334 2609 3.031736 AGTATGATTGAGCTGGTACGGT 58.968 45.455 0.00 0.00 36.83 4.83
2335 2610 3.319405 AGAGTATGATTGAGCTGGTACGG 59.681 47.826 0.00 0.00 38.10 4.02
2336 2611 4.576216 AGAGTATGATTGAGCTGGTACG 57.424 45.455 0.00 0.00 0.00 3.67
2337 2612 5.053145 CCAAGAGTATGATTGAGCTGGTAC 58.947 45.833 0.00 0.00 0.00 3.34
2338 2613 4.716784 ACCAAGAGTATGATTGAGCTGGTA 59.283 41.667 0.00 0.00 0.00 3.25
2339 2614 3.521126 ACCAAGAGTATGATTGAGCTGGT 59.479 43.478 0.00 0.00 0.00 4.00
2344 2619 5.181009 TGAGCAACCAAGAGTATGATTGAG 58.819 41.667 0.00 0.00 0.00 3.02
2346 2621 5.885230 TTGAGCAACCAAGAGTATGATTG 57.115 39.130 0.00 0.00 0.00 2.67
2349 2624 5.181009 CAGATTGAGCAACCAAGAGTATGA 58.819 41.667 0.00 0.00 0.00 2.15
2354 2629 1.129998 CGCAGATTGAGCAACCAAGAG 59.870 52.381 0.00 0.00 0.00 2.85
2538 2849 3.652869 TGAAGTTGATCACCTTCCCTTCT 59.347 43.478 25.04 0.00 36.98 2.85
2646 2957 3.170672 TGTCCCTGTGCCTGTGCT 61.171 61.111 0.00 0.00 38.71 4.40
2695 3006 2.291741 GGGCGATGGATGATGAAACTTC 59.708 50.000 0.00 0.00 0.00 3.01
2696 3007 2.092212 AGGGCGATGGATGATGAAACTT 60.092 45.455 0.00 0.00 0.00 2.66
2716 3027 8.662781 TTCCCGATGACTTTTATTATTCTGAG 57.337 34.615 0.00 0.00 0.00 3.35
2719 3030 9.495572 GAGATTCCCGATGACTTTTATTATTCT 57.504 33.333 0.00 0.00 0.00 2.40
2731 3042 4.054671 GTGAGATTGAGATTCCCGATGAC 58.945 47.826 0.00 0.00 0.00 3.06
2732 3043 3.963374 AGTGAGATTGAGATTCCCGATGA 59.037 43.478 0.00 0.00 0.00 2.92
2733 3044 4.056740 CAGTGAGATTGAGATTCCCGATG 58.943 47.826 0.00 0.00 0.00 3.84
2734 3045 3.708631 ACAGTGAGATTGAGATTCCCGAT 59.291 43.478 0.00 0.00 0.00 4.18
2735 3046 3.099905 ACAGTGAGATTGAGATTCCCGA 58.900 45.455 0.00 0.00 0.00 5.14
2736 3047 3.533606 ACAGTGAGATTGAGATTCCCG 57.466 47.619 0.00 0.00 0.00 5.14
2737 3048 5.860941 TCTACAGTGAGATTGAGATTCCC 57.139 43.478 0.00 0.00 0.00 3.97
2738 3049 6.922957 GTCATCTACAGTGAGATTGAGATTCC 59.077 42.308 0.00 0.00 33.75 3.01
2740 3051 7.415592 TGTCATCTACAGTGAGATTGAGATT 57.584 36.000 0.00 0.00 33.75 2.40
2791 3102 0.400213 AAACTGTTGGAGATGCCCGA 59.600 50.000 0.00 0.00 34.97 5.14
2793 3104 5.133221 ACATATAAACTGTTGGAGATGCCC 58.867 41.667 9.13 0.00 34.97 5.36
2794 3105 6.699575 AACATATAAACTGTTGGAGATGCC 57.300 37.500 9.13 0.00 35.57 4.40
2795 3106 7.227512 AGCTAACATATAAACTGTTGGAGATGC 59.772 37.037 5.51 0.00 37.29 3.91
2796 3107 8.668510 AGCTAACATATAAACTGTTGGAGATG 57.331 34.615 5.51 1.61 37.29 2.90
2797 3108 9.113838 CAAGCTAACATATAAACTGTTGGAGAT 57.886 33.333 5.51 0.00 37.29 2.75
2798 3109 8.100791 ACAAGCTAACATATAAACTGTTGGAGA 58.899 33.333 5.51 0.00 37.29 3.71
2799 3110 8.268850 ACAAGCTAACATATAAACTGTTGGAG 57.731 34.615 5.51 0.00 37.29 3.86
2800 3111 8.511321 CAACAAGCTAACATATAAACTGTTGGA 58.489 33.333 10.28 0.00 37.29 3.53
2801 3112 7.754924 CCAACAAGCTAACATATAAACTGTTGG 59.245 37.037 18.81 18.81 43.13 3.77
2802 3113 8.296713 ACCAACAAGCTAACATATAAACTGTTG 58.703 33.333 10.92 10.92 37.41 3.33
2803 3114 8.404107 ACCAACAAGCTAACATATAAACTGTT 57.596 30.769 0.00 0.00 39.93 3.16
2804 3115 7.996098 ACCAACAAGCTAACATATAAACTGT 57.004 32.000 0.00 0.00 0.00 3.55
2812 3123 8.410141 GCCATATTTTACCAACAAGCTAACATA 58.590 33.333 0.00 0.00 0.00 2.29
2813 3124 7.093552 TGCCATATTTTACCAACAAGCTAACAT 60.094 33.333 0.00 0.00 0.00 2.71
2814 3125 6.209589 TGCCATATTTTACCAACAAGCTAACA 59.790 34.615 0.00 0.00 0.00 2.41
2815 3126 6.626302 TGCCATATTTTACCAACAAGCTAAC 58.374 36.000 0.00 0.00 0.00 2.34
2816 3127 6.842437 TGCCATATTTTACCAACAAGCTAA 57.158 33.333 0.00 0.00 0.00 3.09
2817 3128 6.379703 ACATGCCATATTTTACCAACAAGCTA 59.620 34.615 0.00 0.00 0.00 3.32
2818 3129 5.187576 ACATGCCATATTTTACCAACAAGCT 59.812 36.000 0.00 0.00 0.00 3.74
2819 3130 5.418676 ACATGCCATATTTTACCAACAAGC 58.581 37.500 0.00 0.00 0.00 4.01
2820 3131 6.629128 TGACATGCCATATTTTACCAACAAG 58.371 36.000 0.00 0.00 0.00 3.16
2821 3132 6.596309 TGACATGCCATATTTTACCAACAA 57.404 33.333 0.00 0.00 0.00 2.83
2822 3133 6.379417 TGATGACATGCCATATTTTACCAACA 59.621 34.615 0.00 0.00 0.00 3.33
2823 3134 6.804677 TGATGACATGCCATATTTTACCAAC 58.195 36.000 0.00 0.00 0.00 3.77
2824 3135 7.264221 GTTGATGACATGCCATATTTTACCAA 58.736 34.615 0.00 0.00 0.00 3.67
2825 3136 6.183360 GGTTGATGACATGCCATATTTTACCA 60.183 38.462 0.00 0.00 0.00 3.25
2826 3137 6.183360 TGGTTGATGACATGCCATATTTTACC 60.183 38.462 0.00 0.00 30.61 2.85
2827 3138 6.804677 TGGTTGATGACATGCCATATTTTAC 58.195 36.000 0.00 0.00 30.61 2.01
2828 3139 7.093596 TGTTGGTTGATGACATGCCATATTTTA 60.094 33.333 0.00 0.00 33.76 1.52
2829 3140 5.936187 TGGTTGATGACATGCCATATTTT 57.064 34.783 0.00 0.00 30.61 1.82
2830 3141 5.187381 TGTTGGTTGATGACATGCCATATTT 59.813 36.000 0.00 0.00 33.76 1.40
2831 3142 4.710865 TGTTGGTTGATGACATGCCATATT 59.289 37.500 0.00 0.00 33.76 1.28
2832 3143 4.279982 TGTTGGTTGATGACATGCCATAT 58.720 39.130 0.00 0.00 33.76 1.78
2833 3144 3.694926 TGTTGGTTGATGACATGCCATA 58.305 40.909 0.00 0.00 33.76 2.74
2834 3145 2.527497 TGTTGGTTGATGACATGCCAT 58.473 42.857 0.00 0.00 33.76 4.40
2835 3146 1.992538 TGTTGGTTGATGACATGCCA 58.007 45.000 0.00 0.00 32.56 4.92
2836 3147 2.756760 AGATGTTGGTTGATGACATGCC 59.243 45.455 0.00 0.00 34.38 4.40
2837 3148 4.445452 AAGATGTTGGTTGATGACATGC 57.555 40.909 0.00 0.00 34.38 4.06
2838 3149 6.912082 TGTTAAGATGTTGGTTGATGACATG 58.088 36.000 0.00 0.00 34.38 3.21
2839 3150 7.707624 ATGTTAAGATGTTGGTTGATGACAT 57.292 32.000 0.00 0.00 36.76 3.06
2840 3151 7.663493 TGTATGTTAAGATGTTGGTTGATGACA 59.337 33.333 0.00 0.00 0.00 3.58
2841 3152 8.039603 TGTATGTTAAGATGTTGGTTGATGAC 57.960 34.615 0.00 0.00 0.00 3.06
2842 3153 8.511321 GTTGTATGTTAAGATGTTGGTTGATGA 58.489 33.333 0.00 0.00 0.00 2.92
2843 3154 8.296000 TGTTGTATGTTAAGATGTTGGTTGATG 58.704 33.333 0.00 0.00 0.00 3.07
2844 3155 8.402798 TGTTGTATGTTAAGATGTTGGTTGAT 57.597 30.769 0.00 0.00 0.00 2.57
2845 3156 7.809546 TGTTGTATGTTAAGATGTTGGTTGA 57.190 32.000 0.00 0.00 0.00 3.18
2846 3157 8.134895 AGTTGTTGTATGTTAAGATGTTGGTTG 58.865 33.333 0.00 0.00 0.00 3.77
2847 3158 8.134895 CAGTTGTTGTATGTTAAGATGTTGGTT 58.865 33.333 0.00 0.00 0.00 3.67
2848 3159 7.284489 ACAGTTGTTGTATGTTAAGATGTTGGT 59.716 33.333 0.00 0.00 38.56 3.67
2849 3160 7.648142 ACAGTTGTTGTATGTTAAGATGTTGG 58.352 34.615 0.00 0.00 38.56 3.77
2863 3174 7.273712 TGGACAAACTACATACAGTTGTTGTA 58.726 34.615 0.00 0.00 43.69 2.41
2864 3175 6.116806 TGGACAAACTACATACAGTTGTTGT 58.883 36.000 0.00 0.00 43.69 3.32
2865 3176 6.612247 TGGACAAACTACATACAGTTGTTG 57.388 37.500 0.00 0.00 43.69 3.33
2866 3177 7.817418 ATTGGACAAACTACATACAGTTGTT 57.183 32.000 0.00 0.00 45.84 2.83
2867 3178 7.606456 CCTATTGGACAAACTACATACAGTTGT 59.394 37.037 0.00 0.00 35.66 3.32
2868 3179 7.822334 TCCTATTGGACAAACTACATACAGTTG 59.178 37.037 0.00 0.00 36.81 3.16
2869 3180 7.913789 TCCTATTGGACAAACTACATACAGTT 58.086 34.615 0.00 0.00 37.64 3.16
2870 3181 7.490657 TCCTATTGGACAAACTACATACAGT 57.509 36.000 0.00 0.00 37.46 3.55
2903 3214 9.771534 GTAGAATGAGAGAGCACCTTATTTATT 57.228 33.333 0.00 0.00 0.00 1.40
2904 3215 8.928448 TGTAGAATGAGAGAGCACCTTATTTAT 58.072 33.333 0.00 0.00 0.00 1.40
2905 3216 8.306313 TGTAGAATGAGAGAGCACCTTATTTA 57.694 34.615 0.00 0.00 0.00 1.40
2906 3217 7.187824 TGTAGAATGAGAGAGCACCTTATTT 57.812 36.000 0.00 0.00 0.00 1.40
2907 3218 6.798427 TGTAGAATGAGAGAGCACCTTATT 57.202 37.500 0.00 0.00 0.00 1.40
2908 3219 6.992664 ATGTAGAATGAGAGAGCACCTTAT 57.007 37.500 0.00 0.00 0.00 1.73
2909 3220 6.381133 TCAATGTAGAATGAGAGAGCACCTTA 59.619 38.462 0.00 0.00 0.00 2.69
2910 3221 5.188555 TCAATGTAGAATGAGAGAGCACCTT 59.811 40.000 0.00 0.00 0.00 3.50
2911 3222 4.713814 TCAATGTAGAATGAGAGAGCACCT 59.286 41.667 0.00 0.00 0.00 4.00
2912 3223 5.016051 TCAATGTAGAATGAGAGAGCACC 57.984 43.478 0.00 0.00 0.00 5.01
2913 3224 5.006552 GCTTCAATGTAGAATGAGAGAGCAC 59.993 44.000 0.00 0.00 30.81 4.40
2914 3225 5.105023 AGCTTCAATGTAGAATGAGAGAGCA 60.105 40.000 3.71 0.00 32.14 4.26
2915 3226 5.358922 AGCTTCAATGTAGAATGAGAGAGC 58.641 41.667 0.00 0.00 30.63 4.09
2916 3227 6.817641 ACAAGCTTCAATGTAGAATGAGAGAG 59.182 38.462 0.00 0.00 0.00 3.20
2917 3228 6.592994 CACAAGCTTCAATGTAGAATGAGAGA 59.407 38.462 0.00 0.00 0.00 3.10
2918 3229 6.675002 GCACAAGCTTCAATGTAGAATGAGAG 60.675 42.308 0.00 0.00 37.91 3.20
2919 3230 5.122869 GCACAAGCTTCAATGTAGAATGAGA 59.877 40.000 0.00 0.00 37.91 3.27
2920 3231 5.106436 TGCACAAGCTTCAATGTAGAATGAG 60.106 40.000 0.00 0.00 42.74 2.90
2921 3232 4.761227 TGCACAAGCTTCAATGTAGAATGA 59.239 37.500 0.00 0.00 42.74 2.57
2922 3233 5.050644 TGCACAAGCTTCAATGTAGAATG 57.949 39.130 0.00 0.00 42.74 2.67
2923 3234 5.336213 CCTTGCACAAGCTTCAATGTAGAAT 60.336 40.000 0.00 0.00 42.74 2.40
2924 3235 4.022935 CCTTGCACAAGCTTCAATGTAGAA 60.023 41.667 0.00 0.00 42.74 2.10
2925 3236 3.503363 CCTTGCACAAGCTTCAATGTAGA 59.497 43.478 0.00 0.00 42.74 2.59
2926 3237 3.254166 ACCTTGCACAAGCTTCAATGTAG 59.746 43.478 0.00 0.00 42.74 2.74
2927 3238 3.004629 CACCTTGCACAAGCTTCAATGTA 59.995 43.478 0.00 0.00 42.74 2.29
2928 3239 2.034124 ACCTTGCACAAGCTTCAATGT 58.966 42.857 0.00 0.00 42.74 2.71
2929 3240 2.223876 ACACCTTGCACAAGCTTCAATG 60.224 45.455 0.00 0.00 42.74 2.82
2930 3241 2.034124 ACACCTTGCACAAGCTTCAAT 58.966 42.857 0.00 0.00 42.74 2.57
2931 3242 1.134753 CACACCTTGCACAAGCTTCAA 59.865 47.619 0.00 0.00 42.74 2.69
2932 3243 0.740149 CACACCTTGCACAAGCTTCA 59.260 50.000 0.00 0.00 42.74 3.02
2933 3244 0.740737 ACACACCTTGCACAAGCTTC 59.259 50.000 0.00 0.00 42.74 3.86
2934 3245 1.135024 CAACACACCTTGCACAAGCTT 60.135 47.619 4.82 0.00 42.74 3.74
2935 3246 0.457035 CAACACACCTTGCACAAGCT 59.543 50.000 4.82 0.00 42.74 3.74
2936 3247 0.528249 CCAACACACCTTGCACAAGC 60.528 55.000 4.82 0.00 42.57 4.01
2937 3248 0.817013 ACCAACACACCTTGCACAAG 59.183 50.000 3.32 3.32 38.14 3.16
2938 3249 1.203523 GAACCAACACACCTTGCACAA 59.796 47.619 0.00 0.00 0.00 3.33
2939 3250 0.814457 GAACCAACACACCTTGCACA 59.186 50.000 0.00 0.00 0.00 4.57
2940 3251 0.814457 TGAACCAACACACCTTGCAC 59.186 50.000 0.00 0.00 0.00 4.57
2941 3252 1.408340 CATGAACCAACACACCTTGCA 59.592 47.619 0.00 0.00 0.00 4.08
2942 3253 1.408702 ACATGAACCAACACACCTTGC 59.591 47.619 0.00 0.00 0.00 4.01
2943 3254 3.629855 TGTACATGAACCAACACACCTTG 59.370 43.478 0.00 0.00 0.00 3.61
2944 3255 3.892284 TGTACATGAACCAACACACCTT 58.108 40.909 0.00 0.00 0.00 3.50
2945 3256 3.569194 TGTACATGAACCAACACACCT 57.431 42.857 0.00 0.00 0.00 4.00
2946 3257 4.757657 TGTATGTACATGAACCAACACACC 59.242 41.667 18.81 0.00 0.00 4.16
2947 3258 5.933187 TGTATGTACATGAACCAACACAC 57.067 39.130 18.81 4.99 0.00 3.82
2948 3259 5.239744 GGTTGTATGTACATGAACCAACACA 59.760 40.000 29.43 17.95 35.95 3.72
2949 3260 5.472137 AGGTTGTATGTACATGAACCAACAC 59.528 40.000 32.53 22.89 37.22 3.32
2950 3261 5.626142 AGGTTGTATGTACATGAACCAACA 58.374 37.500 32.53 21.23 37.22 3.33
2951 3262 6.349033 GGAAGGTTGTATGTACATGAACCAAC 60.349 42.308 32.53 27.14 37.22 3.77
2952 3263 5.708230 GGAAGGTTGTATGTACATGAACCAA 59.292 40.000 32.53 21.44 37.22 3.67
2953 3264 5.013704 AGGAAGGTTGTATGTACATGAACCA 59.986 40.000 32.53 18.28 37.22 3.67
2954 3265 5.497474 AGGAAGGTTGTATGTACATGAACC 58.503 41.667 28.27 28.27 35.89 3.62
2955 3266 6.407202 AGAGGAAGGTTGTATGTACATGAAC 58.593 40.000 18.81 18.28 35.89 3.18
2956 3267 6.440647 AGAGAGGAAGGTTGTATGTACATGAA 59.559 38.462 18.81 8.19 35.89 2.57
2957 3268 5.958380 AGAGAGGAAGGTTGTATGTACATGA 59.042 40.000 18.81 1.91 35.89 3.07
2958 3269 6.227298 AGAGAGGAAGGTTGTATGTACATG 57.773 41.667 18.81 0.00 35.89 3.21
2959 3270 6.875972 AAGAGAGGAAGGTTGTATGTACAT 57.124 37.500 13.93 13.93 35.89 2.29
2960 3271 6.295688 GGAAAGAGAGGAAGGTTGTATGTACA 60.296 42.308 0.00 0.00 0.00 2.90
2961 3272 6.070710 AGGAAAGAGAGGAAGGTTGTATGTAC 60.071 42.308 0.00 0.00 0.00 2.90
2962 3273 6.023603 AGGAAAGAGAGGAAGGTTGTATGTA 58.976 40.000 0.00 0.00 0.00 2.29
2963 3274 4.846940 AGGAAAGAGAGGAAGGTTGTATGT 59.153 41.667 0.00 0.00 0.00 2.29
2964 3275 5.046304 TGAGGAAAGAGAGGAAGGTTGTATG 60.046 44.000 0.00 0.00 0.00 2.39
2965 3276 5.094387 TGAGGAAAGAGAGGAAGGTTGTAT 58.906 41.667 0.00 0.00 0.00 2.29
2966 3277 4.489737 TGAGGAAAGAGAGGAAGGTTGTA 58.510 43.478 0.00 0.00 0.00 2.41
2967 3278 3.318313 TGAGGAAAGAGAGGAAGGTTGT 58.682 45.455 0.00 0.00 0.00 3.32
2968 3279 4.566426 ATGAGGAAAGAGAGGAAGGTTG 57.434 45.455 0.00 0.00 0.00 3.77
2969 3280 5.590976 AAATGAGGAAAGAGAGGAAGGTT 57.409 39.130 0.00 0.00 0.00 3.50
2970 3281 6.899892 ATAAATGAGGAAAGAGAGGAAGGT 57.100 37.500 0.00 0.00 0.00 3.50
2971 3282 7.115414 ACAATAAATGAGGAAAGAGAGGAAGG 58.885 38.462 0.00 0.00 0.00 3.46
2972 3283 9.844257 ATACAATAAATGAGGAAAGAGAGGAAG 57.156 33.333 0.00 0.00 0.00 3.46
2973 3284 9.618890 CATACAATAAATGAGGAAAGAGAGGAA 57.381 33.333 0.00 0.00 0.00 3.36
2974 3285 8.992349 TCATACAATAAATGAGGAAAGAGAGGA 58.008 33.333 0.00 0.00 0.00 3.71
2975 3286 9.790344 ATCATACAATAAATGAGGAAAGAGAGG 57.210 33.333 0.00 0.00 36.82 3.69
2998 3309 9.850198 TCACATAGGATTTTTGATGATGTATCA 57.150 29.630 0.00 0.00 43.92 2.15
3000 3311 9.631257 TGTCACATAGGATTTTTGATGATGTAT 57.369 29.630 0.00 0.00 0.00 2.29
3001 3312 9.460019 TTGTCACATAGGATTTTTGATGATGTA 57.540 29.630 0.00 0.00 0.00 2.29
3002 3313 7.943079 TGTCACATAGGATTTTTGATGATGT 57.057 32.000 0.00 0.00 0.00 3.06
3003 3314 9.297586 CTTTGTCACATAGGATTTTTGATGATG 57.702 33.333 0.00 0.00 0.00 3.07
3004 3315 9.028284 ACTTTGTCACATAGGATTTTTGATGAT 57.972 29.630 0.00 0.00 0.00 2.45
3005 3316 8.408043 ACTTTGTCACATAGGATTTTTGATGA 57.592 30.769 0.00 0.00 0.00 2.92
3006 3317 8.517878 AGACTTTGTCACATAGGATTTTTGATG 58.482 33.333 0.00 0.00 34.60 3.07
3007 3318 8.641498 AGACTTTGTCACATAGGATTTTTGAT 57.359 30.769 0.00 0.00 34.60 2.57
3008 3319 8.999431 GTAGACTTTGTCACATAGGATTTTTGA 58.001 33.333 0.00 0.00 34.60 2.69
3009 3320 8.237267 GGTAGACTTTGTCACATAGGATTTTTG 58.763 37.037 0.00 0.00 34.60 2.44
3010 3321 7.942341 TGGTAGACTTTGTCACATAGGATTTTT 59.058 33.333 0.00 0.00 34.60 1.94
3011 3322 7.458397 TGGTAGACTTTGTCACATAGGATTTT 58.542 34.615 0.00 0.00 34.60 1.82
3012 3323 7.016153 TGGTAGACTTTGTCACATAGGATTT 57.984 36.000 0.00 0.00 34.60 2.17
3013 3324 6.620877 TGGTAGACTTTGTCACATAGGATT 57.379 37.500 0.00 0.00 34.60 3.01
3014 3325 6.013725 TGTTGGTAGACTTTGTCACATAGGAT 60.014 38.462 0.00 0.00 34.60 3.24
3015 3326 5.305902 TGTTGGTAGACTTTGTCACATAGGA 59.694 40.000 0.00 0.00 34.60 2.94
3016 3327 5.547465 TGTTGGTAGACTTTGTCACATAGG 58.453 41.667 0.00 0.00 34.60 2.57
3017 3328 6.706270 AGTTGTTGGTAGACTTTGTCACATAG 59.294 38.462 0.00 0.00 34.60 2.23
3018 3329 6.588204 AGTTGTTGGTAGACTTTGTCACATA 58.412 36.000 0.46 0.00 34.60 2.29
3019 3330 5.437060 AGTTGTTGGTAGACTTTGTCACAT 58.563 37.500 0.46 0.00 34.60 3.21
3020 3331 4.839121 AGTTGTTGGTAGACTTTGTCACA 58.161 39.130 0.46 0.00 34.60 3.58
3021 3332 5.050295 GCTAGTTGTTGGTAGACTTTGTCAC 60.050 44.000 0.46 0.00 34.60 3.67
3022 3333 5.054477 GCTAGTTGTTGGTAGACTTTGTCA 58.946 41.667 0.46 0.00 34.60 3.58
3023 3334 5.298347 AGCTAGTTGTTGGTAGACTTTGTC 58.702 41.667 0.00 0.00 0.00 3.18
3024 3335 5.291905 AGCTAGTTGTTGGTAGACTTTGT 57.708 39.130 0.00 0.00 0.00 2.83
3025 3336 6.704493 TGTAAGCTAGTTGTTGGTAGACTTTG 59.296 38.462 0.00 0.00 0.00 2.77
3026 3337 6.823497 TGTAAGCTAGTTGTTGGTAGACTTT 58.177 36.000 0.00 0.00 0.00 2.66
3027 3338 6.415206 TGTAAGCTAGTTGTTGGTAGACTT 57.585 37.500 0.00 0.00 0.00 3.01
3028 3339 6.041751 ACTTGTAAGCTAGTTGTTGGTAGACT 59.958 38.462 0.00 0.00 0.00 3.24
3029 3340 6.221659 ACTTGTAAGCTAGTTGTTGGTAGAC 58.778 40.000 0.00 0.00 0.00 2.59
3030 3341 6.415206 ACTTGTAAGCTAGTTGTTGGTAGA 57.585 37.500 0.00 0.00 0.00 2.59
3031 3342 7.654520 TGTAACTTGTAAGCTAGTTGTTGGTAG 59.345 37.037 9.42 0.00 40.04 3.18
3032 3343 7.499292 TGTAACTTGTAAGCTAGTTGTTGGTA 58.501 34.615 9.42 0.00 40.04 3.25
3033 3344 6.350906 TGTAACTTGTAAGCTAGTTGTTGGT 58.649 36.000 9.42 0.00 40.04 3.67
3034 3345 6.854496 TGTAACTTGTAAGCTAGTTGTTGG 57.146 37.500 9.42 0.00 40.04 3.77
3035 3346 7.130269 GGTTGTAACTTGTAAGCTAGTTGTTG 58.870 38.462 9.42 0.00 40.04 3.33
3036 3347 6.824704 TGGTTGTAACTTGTAAGCTAGTTGTT 59.175 34.615 9.42 4.15 40.04 2.83
3037 3348 6.350906 TGGTTGTAACTTGTAAGCTAGTTGT 58.649 36.000 9.42 0.00 40.04 3.32
3038 3349 6.854496 TGGTTGTAACTTGTAAGCTAGTTG 57.146 37.500 9.42 0.00 40.04 3.16
3039 3350 7.717875 TCAATGGTTGTAACTTGTAAGCTAGTT 59.282 33.333 5.04 5.04 41.90 2.24
3040 3351 7.221450 TCAATGGTTGTAACTTGTAAGCTAGT 58.779 34.615 0.00 0.00 32.29 2.57
3041 3352 7.667043 TCAATGGTTGTAACTTGTAAGCTAG 57.333 36.000 0.00 0.00 0.00 3.42
3042 3353 7.934665 TCTTCAATGGTTGTAACTTGTAAGCTA 59.065 33.333 0.00 0.00 0.00 3.32
3043 3354 6.770785 TCTTCAATGGTTGTAACTTGTAAGCT 59.229 34.615 0.00 0.00 0.00 3.74
3044 3355 6.966021 TCTTCAATGGTTGTAACTTGTAAGC 58.034 36.000 0.00 0.00 0.00 3.09
3045 3356 7.538678 GCATCTTCAATGGTTGTAACTTGTAAG 59.461 37.037 0.00 0.00 0.00 2.34
3046 3357 7.367285 GCATCTTCAATGGTTGTAACTTGTAA 58.633 34.615 0.00 0.00 0.00 2.41
3047 3358 6.072175 GGCATCTTCAATGGTTGTAACTTGTA 60.072 38.462 0.00 0.00 0.00 2.41
3048 3359 5.278957 GGCATCTTCAATGGTTGTAACTTGT 60.279 40.000 0.00 0.00 0.00 3.16
3049 3360 5.163513 GGCATCTTCAATGGTTGTAACTTG 58.836 41.667 0.00 0.00 0.00 3.16
3050 3361 4.220602 GGGCATCTTCAATGGTTGTAACTT 59.779 41.667 0.00 0.00 0.00 2.66
3051 3362 3.763897 GGGCATCTTCAATGGTTGTAACT 59.236 43.478 0.00 0.00 0.00 2.24
3052 3363 3.763897 AGGGCATCTTCAATGGTTGTAAC 59.236 43.478 0.00 0.00 0.00 2.50
3053 3364 4.046286 AGGGCATCTTCAATGGTTGTAA 57.954 40.909 0.00 0.00 0.00 2.41
3054 3365 3.737559 AGGGCATCTTCAATGGTTGTA 57.262 42.857 0.00 0.00 0.00 2.41
3055 3366 2.610438 AGGGCATCTTCAATGGTTGT 57.390 45.000 0.00 0.00 0.00 3.32
3056 3367 3.181483 GCTTAGGGCATCTTCAATGGTTG 60.181 47.826 0.00 0.00 41.35 3.77
3057 3368 3.026694 GCTTAGGGCATCTTCAATGGTT 58.973 45.455 0.00 0.00 41.35 3.67
3058 3369 2.659428 GCTTAGGGCATCTTCAATGGT 58.341 47.619 0.00 0.00 41.35 3.55
3067 3378 9.601034 CAGTACTATCTGACTGCTTAGGGCATC 62.601 48.148 0.00 0.00 42.66 3.91
3068 3379 7.918888 CAGTACTATCTGACTGCTTAGGGCAT 61.919 46.154 0.00 0.00 42.66 4.40
3069 3380 6.672423 CAGTACTATCTGACTGCTTAGGGCA 61.672 48.000 0.00 0.00 42.00 5.36
3093 3460 7.119846 ACTGAACTTCAAACCATAACTGATAGC 59.880 37.037 0.00 0.00 0.00 2.97
3110 3477 8.612619 TCATTTGAGTCTTTTACACTGAACTTC 58.387 33.333 0.00 0.00 0.00 3.01
3112 3479 7.012421 GGTCATTTGAGTCTTTTACACTGAACT 59.988 37.037 0.00 0.00 0.00 3.01
3113 3480 7.132863 GGTCATTTGAGTCTTTTACACTGAAC 58.867 38.462 0.00 0.00 0.00 3.18
3114 3481 6.018262 CGGTCATTTGAGTCTTTTACACTGAA 60.018 38.462 0.00 0.00 0.00 3.02
3116 3483 5.465390 TCGGTCATTTGAGTCTTTTACACTG 59.535 40.000 0.00 0.00 0.00 3.66
3117 3484 5.465724 GTCGGTCATTTGAGTCTTTTACACT 59.534 40.000 0.00 0.00 0.00 3.55
3118 3485 5.611844 CGTCGGTCATTTGAGTCTTTTACAC 60.612 44.000 0.00 0.00 0.00 2.90
3144 3517 1.069823 AGTCAGAACACACCTGCTCAG 59.930 52.381 0.00 0.00 0.00 3.35
3154 3527 2.796032 GCAGCCACAAAAGTCAGAACAC 60.796 50.000 0.00 0.00 0.00 3.32
3253 3635 3.492102 TGGAGAAGGCCAGTAATATGC 57.508 47.619 5.01 0.00 33.10 3.14
3283 3665 3.694058 ATCCGCTTGCAGGGCAGAG 62.694 63.158 12.87 0.00 40.61 3.35
3324 3706 6.144724 GGAAGAATTATCCGATCTTCAGAACG 59.855 42.308 14.53 0.00 46.92 3.95
3333 3715 6.284459 AGTTGTCAGGAAGAATTATCCGATC 58.716 40.000 4.54 0.00 42.03 3.69
3334 3716 6.240549 AGTTGTCAGGAAGAATTATCCGAT 57.759 37.500 4.54 0.00 42.03 4.18
3406 3788 4.821260 ACGGATATGCTGATGTATTTTGCA 59.179 37.500 0.00 0.00 38.05 4.08
3417 3799 5.354513 GCAGTAGTATCTACGGATATGCTGA 59.645 44.000 10.25 0.00 35.51 4.26
3459 3843 4.260985 TGACATCGAGGTAATGCAATTGT 58.739 39.130 1.11 0.00 36.99 2.71
3547 3931 6.369059 AGCTCATTGTGATTTTATCTTCCG 57.631 37.500 0.00 0.00 0.00 4.30
3556 3940 4.553323 GCACTTCAAGCTCATTGTGATTT 58.447 39.130 12.12 0.00 40.05 2.17
3567 3951 0.888285 GCTCAGTGGCACTTCAAGCT 60.888 55.000 26.91 3.76 0.00 3.74
3634 4018 1.816224 GTTCCCTGCGCTTCCAATAAA 59.184 47.619 9.73 0.00 0.00 1.40
3636 4020 0.393808 GGTTCCCTGCGCTTCCAATA 60.394 55.000 9.73 0.00 0.00 1.90
3637 4021 1.678970 GGTTCCCTGCGCTTCCAAT 60.679 57.895 9.73 0.00 0.00 3.16
3658 4042 3.854809 GTCGTTTGTCTATGAGTCTCAGC 59.145 47.826 8.82 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.