Multiple sequence alignment - TraesCS2A01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G169100 chr2A 100.000 6356 0 0 1 6356 123553567 123547212 0.000000e+00 11738.0
1 TraesCS2A01G169100 chr2A 95.632 641 28 0 5716 6356 678939721 678939081 0.000000e+00 1029.0
2 TraesCS2A01G169100 chr2A 95.164 641 31 0 5716 6356 123535115 123534475 0.000000e+00 1013.0
3 TraesCS2A01G169100 chr2A 96.491 171 6 0 1 171 63143602 63143432 3.750000e-72 283.0
4 TraesCS2A01G169100 chr2D 95.791 5060 136 30 709 5719 120107819 120102788 0.000000e+00 8093.0
5 TraesCS2A01G169100 chr2D 96.450 169 6 0 1 169 294545363 294545531 4.850000e-71 279.0
6 TraesCS2A01G169100 chr2D 88.285 239 17 6 164 399 120108048 120107818 6.280000e-70 276.0
7 TraesCS2A01G169100 chr2B 92.356 5102 239 66 707 5720 172984896 172979858 0.000000e+00 7121.0
8 TraesCS2A01G169100 chr2B 86.667 150 20 0 251 400 172985042 172984893 3.940000e-37 167.0
9 TraesCS2A01G169100 chr4A 95.963 644 24 2 5714 6356 166714788 166715430 0.000000e+00 1044.0
10 TraesCS2A01G169100 chr4A 95.164 641 31 0 5716 6356 405009260 405009900 0.000000e+00 1013.0
11 TraesCS2A01G169100 chr4A 95.164 641 31 0 5716 6356 438588123 438587483 0.000000e+00 1013.0
12 TraesCS2A01G169100 chr5A 95.788 641 26 1 5716 6356 40894152 40893513 0.000000e+00 1033.0
13 TraesCS2A01G169100 chr5A 95.320 641 29 1 5716 6356 162237140 162237779 0.000000e+00 1016.0
14 TraesCS2A01G169100 chr5A 90.096 313 30 1 397 709 60251578 60251889 7.670000e-109 405.0
15 TraesCS2A01G169100 chr5A 93.048 187 11 2 1 186 574794430 574794615 8.120000e-69 272.0
16 TraesCS2A01G169100 chr7A 95.320 641 30 0 5716 6356 33244016 33244656 0.000000e+00 1018.0
17 TraesCS2A01G169100 chr7A 95.455 638 29 0 5719 6356 263139920 263140557 0.000000e+00 1018.0
18 TraesCS2A01G169100 chr7A 90.735 313 29 0 397 709 646469600 646469912 9.860000e-113 418.0
19 TraesCS2A01G169100 chr7A 90.385 312 29 1 396 706 58208071 58208382 5.930000e-110 409.0
20 TraesCS2A01G169100 chr7A 79.699 133 22 2 197 329 14487672 14487545 2.440000e-14 91.6
21 TraesCS2A01G169100 chr6A 91.693 313 26 0 397 709 140571120 140570808 9.790000e-118 435.0
22 TraesCS2A01G169100 chr6A 91.083 314 28 0 396 709 322980754 322981067 5.890000e-115 425.0
23 TraesCS2A01G169100 chr1A 91.167 317 25 2 397 710 549335084 549335400 1.640000e-115 427.0
24 TraesCS2A01G169100 chr1A 96.450 169 6 0 1 169 526890571 526890403 4.850000e-71 279.0
25 TraesCS2A01G169100 chr5D 89.905 317 32 0 397 713 2621724 2622040 5.930000e-110 409.0
26 TraesCS2A01G169100 chr5D 91.667 96 8 0 2472 2567 139441012 139440917 4.000000e-27 134.0
27 TraesCS2A01G169100 chr6D 90.096 313 31 0 397 709 340113144 340112832 2.130000e-109 407.0
28 TraesCS2A01G169100 chr6D 90.909 99 9 0 2469 2567 119139165 119139263 4.000000e-27 134.0
29 TraesCS2A01G169100 chr3D 89.873 316 32 0 397 712 582152068 582151753 2.130000e-109 407.0
30 TraesCS2A01G169100 chr3D 92.784 97 7 0 2471 2567 609983905 609983809 2.390000e-29 141.0
31 TraesCS2A01G169100 chr6B 96.450 169 6 0 1 169 564517774 564517606 4.850000e-71 279.0
32 TraesCS2A01G169100 chr3B 95.930 172 7 0 1 172 695918188 695918359 4.850000e-71 279.0
33 TraesCS2A01G169100 chr4B 95.402 174 7 1 1 173 541156932 541156759 6.280000e-70 276.0
34 TraesCS2A01G169100 chr4B 95.833 168 7 0 1 168 448873607 448873774 8.120000e-69 272.0
35 TraesCS2A01G169100 chr3A 92.308 195 11 4 1 191 634413606 634413412 2.260000e-69 274.0
36 TraesCS2A01G169100 chr3A 91.919 99 8 0 2469 2567 470095679 470095777 8.590000e-29 139.0
37 TraesCS2A01G169100 chr3A 85.345 116 15 2 216 329 388094964 388094849 1.120000e-22 119.0
38 TraesCS2A01G169100 chr7B 90.476 105 10 0 2472 2576 162120908 162120804 8.590000e-29 139.0
39 TraesCS2A01G169100 chr7B 88.889 108 11 1 2461 2567 632337883 632337776 1.440000e-26 132.0
40 TraesCS2A01G169100 chr7B 79.085 153 23 8 215 358 124529069 124528917 5.250000e-16 97.1
41 TraesCS2A01G169100 chr5B 91.176 102 9 0 2466 2567 166379080 166379181 8.590000e-29 139.0
42 TraesCS2A01G169100 chr5B 83.838 99 13 3 218 313 233010967 233011065 2.440000e-14 91.6
43 TraesCS2A01G169100 chr1B 85.217 115 14 3 216 329 438702472 438702584 1.450000e-21 115.0
44 TraesCS2A01G169100 chrUn 79.699 133 22 2 197 329 81427921 81428048 2.440000e-14 91.6
45 TraesCS2A01G169100 chr7D 79.825 114 19 2 216 329 10345407 10345516 5.280000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G169100 chr2A 123547212 123553567 6355 True 11738.0 11738 100.0000 1 6356 1 chr2A.!!$R3 6355
1 TraesCS2A01G169100 chr2A 678939081 678939721 640 True 1029.0 1029 95.6320 5716 6356 1 chr2A.!!$R4 640
2 TraesCS2A01G169100 chr2A 123534475 123535115 640 True 1013.0 1013 95.1640 5716 6356 1 chr2A.!!$R2 640
3 TraesCS2A01G169100 chr2D 120102788 120108048 5260 True 4184.5 8093 92.0380 164 5719 2 chr2D.!!$R1 5555
4 TraesCS2A01G169100 chr2B 172979858 172985042 5184 True 3644.0 7121 89.5115 251 5720 2 chr2B.!!$R1 5469
5 TraesCS2A01G169100 chr4A 166714788 166715430 642 False 1044.0 1044 95.9630 5714 6356 1 chr4A.!!$F1 642
6 TraesCS2A01G169100 chr4A 405009260 405009900 640 False 1013.0 1013 95.1640 5716 6356 1 chr4A.!!$F2 640
7 TraesCS2A01G169100 chr4A 438587483 438588123 640 True 1013.0 1013 95.1640 5716 6356 1 chr4A.!!$R1 640
8 TraesCS2A01G169100 chr5A 40893513 40894152 639 True 1033.0 1033 95.7880 5716 6356 1 chr5A.!!$R1 640
9 TraesCS2A01G169100 chr5A 162237140 162237779 639 False 1016.0 1016 95.3200 5716 6356 1 chr5A.!!$F2 640
10 TraesCS2A01G169100 chr7A 33244016 33244656 640 False 1018.0 1018 95.3200 5716 6356 1 chr7A.!!$F1 640
11 TraesCS2A01G169100 chr7A 263139920 263140557 637 False 1018.0 1018 95.4550 5719 6356 1 chr7A.!!$F3 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 601 0.024364 CTTTTTGTGCGCGCGTTTTT 59.976 45.000 32.35 0.00 0.00 1.94 F
635 637 0.033504 AATGTTGGTCTCGACGCACT 59.966 50.000 0.00 0.00 0.00 4.40 F
697 699 0.098025 AATTATTGTGCGGCCGTTCG 59.902 50.000 28.70 0.27 0.00 3.95 F
708 710 0.102481 GGCCGTTCGAGATGCTCTAA 59.898 55.000 0.00 0.00 0.00 2.10 F
1158 1164 0.716591 TCACCTACTCACTCCCCCAT 59.283 55.000 0.00 0.00 0.00 4.00 F
1235 1241 0.740868 TGGATGAGCTTAGTGTGCGC 60.741 55.000 0.00 0.00 35.28 6.09 F
1754 1773 0.954452 CGGGATTGAGGGCTTATTGC 59.046 55.000 0.00 0.00 41.94 3.56 F
2459 2482 1.136891 ACTTCCTTTTGCTTGCACACC 59.863 47.619 0.00 0.00 0.00 4.16 F
3650 3696 0.179234 TCTGTGCTTTGTCCGTTCCA 59.821 50.000 0.00 0.00 0.00 3.53 F
4247 4322 3.942130 ACCCACTTAAAGCTGCATTTC 57.058 42.857 1.02 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 1434 0.315886 TCAGTTTCTACTTCGGCGCA 59.684 50.000 10.83 0.0 30.26 6.09 R
2557 2582 1.276622 GAAACTAGGCACTCCCTCCA 58.723 55.000 0.00 0.0 44.96 3.86 R
2567 2592 4.006319 AGAGCATCAAAGTGAAACTAGGC 58.994 43.478 0.00 0.0 43.96 3.93 R
2629 2654 6.747659 AAACAGCGTAAAAATTGCTTGTAG 57.252 33.333 0.00 0.0 36.69 2.74 R
2969 2994 4.391155 ACATTTGCTTCCCGTTAAGTGTA 58.609 39.130 0.00 0.0 0.00 2.90 R
3166 3191 9.645059 CTAGAATAGTGATTCACAAGAAACAGA 57.355 33.333 18.57 0.0 43.51 3.41 R
3461 3507 1.666209 GGCAACACAAGCACCACTGT 61.666 55.000 0.00 0.0 0.00 3.55 R
4207 4266 8.545472 AGTGGGTATGCTTTACTAATCAAACTA 58.455 33.333 0.00 0.0 0.00 2.24 R
4995 5077 0.806492 CTAGCGAAGAAAGGGCGGTC 60.806 60.000 0.00 0.0 37.02 4.79 R
5831 5957 0.328258 GAGCCCTGAAGCTGGGTAAA 59.672 55.000 9.27 0.0 45.15 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.421479 CGCGTCGCTGAGAGGGTT 62.421 66.667 16.36 0.00 35.42 4.11
28 29 2.882876 GCGTCGCTGAGAGGGTTA 59.117 61.111 10.68 0.00 35.42 2.85
29 30 1.516603 GCGTCGCTGAGAGGGTTAC 60.517 63.158 10.68 0.00 35.42 2.50
30 31 1.226323 CGTCGCTGAGAGGGTTACG 60.226 63.158 0.00 0.00 0.00 3.18
31 32 1.516603 GTCGCTGAGAGGGTTACGC 60.517 63.158 0.00 0.00 0.00 4.42
32 33 1.677966 TCGCTGAGAGGGTTACGCT 60.678 57.895 0.37 0.37 0.00 5.07
33 34 1.226717 CGCTGAGAGGGTTACGCTC 60.227 63.158 19.75 19.75 45.13 5.03
34 35 1.142097 GCTGAGAGGGTTACGCTCC 59.858 63.158 22.85 15.61 44.39 4.70
35 36 1.605058 GCTGAGAGGGTTACGCTCCA 61.605 60.000 22.85 18.62 44.39 3.86
36 37 0.895530 CTGAGAGGGTTACGCTCCAA 59.104 55.000 22.85 12.30 44.39 3.53
37 38 0.606604 TGAGAGGGTTACGCTCCAAC 59.393 55.000 22.85 15.70 44.39 3.77
38 39 0.458025 GAGAGGGTTACGCTCCAACG 60.458 60.000 22.85 0.00 43.17 4.10
39 40 0.896940 AGAGGGTTACGCTCCAACGA 60.897 55.000 22.85 0.00 43.17 3.85
40 41 0.037975 GAGGGTTACGCTCCAACGAA 60.038 55.000 17.14 0.00 37.45 3.85
41 42 0.393820 AGGGTTACGCTCCAACGAAA 59.606 50.000 0.00 0.00 36.70 3.46
42 43 1.202675 AGGGTTACGCTCCAACGAAAA 60.203 47.619 0.00 0.00 36.70 2.29
43 44 1.808343 GGGTTACGCTCCAACGAAAAT 59.192 47.619 0.00 0.00 36.70 1.82
44 45 2.159612 GGGTTACGCTCCAACGAAAATC 60.160 50.000 0.00 0.00 36.70 2.17
45 46 2.740447 GGTTACGCTCCAACGAAAATCT 59.260 45.455 0.00 0.00 36.70 2.40
46 47 3.187842 GGTTACGCTCCAACGAAAATCTT 59.812 43.478 0.00 0.00 36.70 2.40
47 48 4.319984 GGTTACGCTCCAACGAAAATCTTT 60.320 41.667 0.00 0.00 36.70 2.52
48 49 3.982576 ACGCTCCAACGAAAATCTTTT 57.017 38.095 0.00 0.00 36.70 2.27
49 50 3.628017 ACGCTCCAACGAAAATCTTTTG 58.372 40.909 0.00 0.00 36.70 2.44
50 51 2.979813 CGCTCCAACGAAAATCTTTTGG 59.020 45.455 0.00 0.00 40.01 3.28
51 52 3.317150 GCTCCAACGAAAATCTTTTGGG 58.683 45.455 0.00 0.00 39.27 4.12
52 53 3.243737 GCTCCAACGAAAATCTTTTGGGT 60.244 43.478 0.00 0.00 39.27 4.51
53 54 4.739436 GCTCCAACGAAAATCTTTTGGGTT 60.739 41.667 0.00 0.76 39.27 4.11
54 55 5.346181 TCCAACGAAAATCTTTTGGGTTT 57.654 34.783 0.00 0.00 39.27 3.27
55 56 5.353111 TCCAACGAAAATCTTTTGGGTTTC 58.647 37.500 0.00 0.00 39.27 2.78
56 57 5.105310 TCCAACGAAAATCTTTTGGGTTTCA 60.105 36.000 0.00 0.00 39.27 2.69
57 58 5.757808 CCAACGAAAATCTTTTGGGTTTCAT 59.242 36.000 0.00 0.00 35.76 2.57
58 59 6.073819 CCAACGAAAATCTTTTGGGTTTCATC 60.074 38.462 0.00 0.00 35.76 2.92
59 60 6.405278 ACGAAAATCTTTTGGGTTTCATCT 57.595 33.333 0.00 0.00 31.27 2.90
60 61 6.447162 ACGAAAATCTTTTGGGTTTCATCTC 58.553 36.000 0.00 0.00 31.27 2.75
61 62 5.863935 CGAAAATCTTTTGGGTTTCATCTCC 59.136 40.000 0.00 0.00 31.66 3.71
62 63 6.516527 CGAAAATCTTTTGGGTTTCATCTCCA 60.517 38.462 0.00 0.00 31.66 3.86
63 64 6.940430 AAATCTTTTGGGTTTCATCTCCAT 57.060 33.333 0.00 0.00 0.00 3.41
64 65 8.434589 AAAATCTTTTGGGTTTCATCTCCATA 57.565 30.769 0.00 0.00 0.00 2.74
65 66 8.434589 AAATCTTTTGGGTTTCATCTCCATAA 57.565 30.769 0.00 0.00 0.00 1.90
66 67 8.434589 AATCTTTTGGGTTTCATCTCCATAAA 57.565 30.769 0.00 0.00 0.00 1.40
67 68 7.847711 TCTTTTGGGTTTCATCTCCATAAAA 57.152 32.000 0.00 0.00 0.00 1.52
68 69 7.895759 TCTTTTGGGTTTCATCTCCATAAAAG 58.104 34.615 0.00 0.00 38.81 2.27
69 70 7.508977 TCTTTTGGGTTTCATCTCCATAAAAGT 59.491 33.333 15.36 0.00 38.70 2.66
70 71 6.588719 TTGGGTTTCATCTCCATAAAAGTG 57.411 37.500 0.00 0.00 0.00 3.16
71 72 5.016173 TGGGTTTCATCTCCATAAAAGTGG 58.984 41.667 0.00 0.00 40.76 4.00
72 73 4.142160 GGGTTTCATCTCCATAAAAGTGGC 60.142 45.833 0.00 0.00 39.19 5.01
73 74 4.706962 GGTTTCATCTCCATAAAAGTGGCT 59.293 41.667 0.00 0.00 39.19 4.75
74 75 5.393461 GGTTTCATCTCCATAAAAGTGGCTG 60.393 44.000 0.00 0.00 39.19 4.85
75 76 4.842531 TCATCTCCATAAAAGTGGCTGA 57.157 40.909 0.00 0.00 39.19 4.26
76 77 4.774124 TCATCTCCATAAAAGTGGCTGAG 58.226 43.478 0.00 0.00 39.19 3.35
77 78 4.225942 TCATCTCCATAAAAGTGGCTGAGT 59.774 41.667 0.00 0.00 39.19 3.41
78 79 4.640771 TCTCCATAAAAGTGGCTGAGTT 57.359 40.909 0.00 0.00 39.19 3.01
79 80 4.985538 TCTCCATAAAAGTGGCTGAGTTT 58.014 39.130 0.00 0.00 39.19 2.66
80 81 5.385198 TCTCCATAAAAGTGGCTGAGTTTT 58.615 37.500 6.92 6.92 39.91 2.43
81 82 5.833131 TCTCCATAAAAGTGGCTGAGTTTTT 59.167 36.000 7.01 0.00 38.09 1.94
82 83 7.001674 TCTCCATAAAAGTGGCTGAGTTTTTA 58.998 34.615 7.01 0.00 38.09 1.52
83 84 6.977213 TCCATAAAAGTGGCTGAGTTTTTAC 58.023 36.000 7.01 0.00 38.09 2.01
84 85 5.856455 CCATAAAAGTGGCTGAGTTTTTACG 59.144 40.000 7.01 0.00 38.09 3.18
85 86 4.976224 AAAAGTGGCTGAGTTTTTACGT 57.024 36.364 0.00 0.00 34.08 3.57
86 87 4.976224 AAAGTGGCTGAGTTTTTACGTT 57.024 36.364 0.00 0.00 0.00 3.99
87 88 3.963383 AGTGGCTGAGTTTTTACGTTG 57.037 42.857 0.00 0.00 0.00 4.10
88 89 2.616842 AGTGGCTGAGTTTTTACGTTGG 59.383 45.455 0.00 0.00 0.00 3.77
89 90 1.335496 TGGCTGAGTTTTTACGTTGGC 59.665 47.619 0.00 0.00 0.00 4.52
90 91 1.607148 GGCTGAGTTTTTACGTTGGCT 59.393 47.619 0.00 0.00 0.00 4.75
91 92 2.350484 GGCTGAGTTTTTACGTTGGCTC 60.350 50.000 0.00 0.00 0.00 4.70
92 93 2.661979 GCTGAGTTTTTACGTTGGCTCG 60.662 50.000 0.00 1.70 0.00 5.03
93 94 1.262151 TGAGTTTTTACGTTGGCTCGC 59.738 47.619 0.00 0.00 0.00 5.03
94 95 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
95 96 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
105 106 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
106 107 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
107 108 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
108 109 1.959042 CTCGCCAAGCCTATCACAAT 58.041 50.000 0.00 0.00 0.00 2.71
109 110 1.869767 CTCGCCAAGCCTATCACAATC 59.130 52.381 0.00 0.00 0.00 2.67
110 111 0.947244 CGCCAAGCCTATCACAATCC 59.053 55.000 0.00 0.00 0.00 3.01
111 112 1.475751 CGCCAAGCCTATCACAATCCT 60.476 52.381 0.00 0.00 0.00 3.24
112 113 2.225467 GCCAAGCCTATCACAATCCTC 58.775 52.381 0.00 0.00 0.00 3.71
113 114 2.856222 CCAAGCCTATCACAATCCTCC 58.144 52.381 0.00 0.00 0.00 4.30
114 115 2.441001 CCAAGCCTATCACAATCCTCCT 59.559 50.000 0.00 0.00 0.00 3.69
115 116 3.495806 CCAAGCCTATCACAATCCTCCTC 60.496 52.174 0.00 0.00 0.00 3.71
116 117 2.334023 AGCCTATCACAATCCTCCTCC 58.666 52.381 0.00 0.00 0.00 4.30
117 118 2.090267 AGCCTATCACAATCCTCCTCCT 60.090 50.000 0.00 0.00 0.00 3.69
118 119 2.708325 GCCTATCACAATCCTCCTCCTT 59.292 50.000 0.00 0.00 0.00 3.36
119 120 3.137360 GCCTATCACAATCCTCCTCCTTT 59.863 47.826 0.00 0.00 0.00 3.11
120 121 4.348168 GCCTATCACAATCCTCCTCCTTTA 59.652 45.833 0.00 0.00 0.00 1.85
121 122 5.743422 GCCTATCACAATCCTCCTCCTTTAC 60.743 48.000 0.00 0.00 0.00 2.01
122 123 4.779993 ATCACAATCCTCCTCCTTTACC 57.220 45.455 0.00 0.00 0.00 2.85
123 124 3.803340 TCACAATCCTCCTCCTTTACCT 58.197 45.455 0.00 0.00 0.00 3.08
124 125 3.519510 TCACAATCCTCCTCCTTTACCTG 59.480 47.826 0.00 0.00 0.00 4.00
125 126 2.846827 ACAATCCTCCTCCTTTACCTGG 59.153 50.000 0.00 0.00 0.00 4.45
126 127 2.173569 CAATCCTCCTCCTTTACCTGGG 59.826 54.545 0.00 0.00 0.00 4.45
127 128 0.620700 TCCTCCTCCTTTACCTGGGC 60.621 60.000 0.00 0.00 0.00 5.36
128 129 0.621862 CCTCCTCCTTTACCTGGGCT 60.622 60.000 0.00 0.00 0.00 5.19
129 130 1.290134 CTCCTCCTTTACCTGGGCTT 58.710 55.000 0.00 0.00 0.00 4.35
130 131 0.991920 TCCTCCTTTACCTGGGCTTG 59.008 55.000 0.00 0.00 0.00 4.01
131 132 0.034089 CCTCCTTTACCTGGGCTTGG 60.034 60.000 0.00 0.00 0.00 3.61
132 133 0.034089 CTCCTTTACCTGGGCTTGGG 60.034 60.000 0.00 0.00 0.00 4.12
133 134 0.476808 TCCTTTACCTGGGCTTGGGA 60.477 55.000 0.00 0.00 0.00 4.37
134 135 0.323451 CCTTTACCTGGGCTTGGGAC 60.323 60.000 0.00 0.00 0.00 4.46
135 136 0.323451 CTTTACCTGGGCTTGGGACC 60.323 60.000 0.00 0.00 42.24 4.46
136 137 2.132089 TTTACCTGGGCTTGGGACCG 62.132 60.000 0.00 0.00 45.75 4.79
141 142 4.484872 GGGCTTGGGACCGGCTAC 62.485 72.222 0.00 0.00 0.00 3.58
142 143 4.832608 GGCTTGGGACCGGCTACG 62.833 72.222 0.00 0.00 40.55 3.51
143 144 4.078516 GCTTGGGACCGGCTACGT 62.079 66.667 0.00 0.00 38.78 3.57
144 145 2.660802 CTTGGGACCGGCTACGTT 59.339 61.111 0.00 0.00 38.78 3.99
145 146 1.740296 CTTGGGACCGGCTACGTTG 60.740 63.158 0.00 0.00 38.78 4.10
146 147 2.162338 CTTGGGACCGGCTACGTTGA 62.162 60.000 0.00 0.00 38.78 3.18
147 148 2.162338 TTGGGACCGGCTACGTTGAG 62.162 60.000 0.00 0.00 38.78 3.02
148 149 2.345760 GGGACCGGCTACGTTGAGA 61.346 63.158 0.00 0.00 38.78 3.27
149 150 1.153881 GGACCGGCTACGTTGAGAC 60.154 63.158 0.00 0.00 38.78 3.36
150 151 1.582968 GACCGGCTACGTTGAGACA 59.417 57.895 0.00 0.00 38.78 3.41
151 152 0.456312 GACCGGCTACGTTGAGACAG 60.456 60.000 0.00 0.00 38.78 3.51
152 153 1.805945 CCGGCTACGTTGAGACAGC 60.806 63.158 0.00 0.00 38.78 4.40
153 154 1.080772 CGGCTACGTTGAGACAGCA 60.081 57.895 7.94 0.00 34.63 4.41
154 155 0.458543 CGGCTACGTTGAGACAGCAT 60.459 55.000 7.94 0.00 34.63 3.79
155 156 1.202256 CGGCTACGTTGAGACAGCATA 60.202 52.381 7.94 0.00 34.63 3.14
156 157 2.464865 GGCTACGTTGAGACAGCATAG 58.535 52.381 7.94 0.00 34.63 2.23
157 158 2.464865 GCTACGTTGAGACAGCATAGG 58.535 52.381 0.00 0.00 33.68 2.57
158 159 2.464865 CTACGTTGAGACAGCATAGGC 58.535 52.381 0.00 0.00 41.61 3.93
173 174 5.405331 GCATAGGCGGAGTTAAAGTAAAG 57.595 43.478 0.00 0.00 0.00 1.85
174 175 4.874396 GCATAGGCGGAGTTAAAGTAAAGT 59.126 41.667 0.00 0.00 0.00 2.66
175 176 5.006455 GCATAGGCGGAGTTAAAGTAAAGTC 59.994 44.000 0.00 0.00 0.00 3.01
176 177 4.886496 AGGCGGAGTTAAAGTAAAGTCT 57.114 40.909 0.00 0.00 0.00 3.24
177 178 5.224821 AGGCGGAGTTAAAGTAAAGTCTT 57.775 39.130 0.00 0.00 0.00 3.01
178 179 5.618236 AGGCGGAGTTAAAGTAAAGTCTTT 58.382 37.500 2.81 2.81 40.22 2.52
179 180 6.762333 AGGCGGAGTTAAAGTAAAGTCTTTA 58.238 36.000 0.65 0.65 38.40 1.85
180 181 7.392418 AGGCGGAGTTAAAGTAAAGTCTTTAT 58.608 34.615 8.27 0.00 38.91 1.40
218 219 9.832445 AATGCTCTCTCCGTTTCTAAATATAAA 57.168 29.630 0.00 0.00 0.00 1.40
263 264 9.900710 TTCAATACAAACCACATACAAATGTAC 57.099 29.630 0.00 0.00 44.70 2.90
382 383 7.540474 AAAGAGTAGAGATCAACAGTGGTTA 57.460 36.000 0.00 0.00 34.87 2.85
399 401 7.672239 ACAGTGGTTATTTTAGGCAGGATTAAA 59.328 33.333 0.00 0.00 0.00 1.52
401 403 8.749354 AGTGGTTATTTTAGGCAGGATTAAAAG 58.251 33.333 0.00 0.00 33.66 2.27
402 404 7.491372 GTGGTTATTTTAGGCAGGATTAAAAGC 59.509 37.037 0.00 0.00 33.66 3.51
403 405 7.179338 TGGTTATTTTAGGCAGGATTAAAAGCA 59.821 33.333 0.00 0.00 33.66 3.91
404 406 8.204160 GGTTATTTTAGGCAGGATTAAAAGCAT 58.796 33.333 0.00 0.00 33.66 3.79
405 407 9.249457 GTTATTTTAGGCAGGATTAAAAGCATC 57.751 33.333 0.00 0.00 33.66 3.91
407 409 6.699575 TTTAGGCAGGATTAAAAGCATCTC 57.300 37.500 0.00 0.00 0.00 2.75
408 410 3.560105 AGGCAGGATTAAAAGCATCTCC 58.440 45.455 0.00 0.00 0.00 3.71
409 411 3.053395 AGGCAGGATTAAAAGCATCTCCA 60.053 43.478 0.00 0.00 0.00 3.86
410 412 3.701040 GGCAGGATTAAAAGCATCTCCAA 59.299 43.478 0.00 0.00 0.00 3.53
411 413 4.440663 GGCAGGATTAAAAGCATCTCCAAC 60.441 45.833 0.00 0.00 0.00 3.77
412 414 4.158394 GCAGGATTAAAAGCATCTCCAACA 59.842 41.667 0.00 0.00 0.00 3.33
413 415 5.678107 GCAGGATTAAAAGCATCTCCAACAG 60.678 44.000 0.00 0.00 0.00 3.16
414 416 4.952335 AGGATTAAAAGCATCTCCAACAGG 59.048 41.667 0.00 0.00 0.00 4.00
415 417 4.440663 GGATTAAAAGCATCTCCAACAGGC 60.441 45.833 0.00 0.00 0.00 4.85
416 418 0.883833 AAAAGCATCTCCAACAGGCG 59.116 50.000 0.00 0.00 0.00 5.52
417 419 1.589716 AAAGCATCTCCAACAGGCGC 61.590 55.000 0.00 0.00 0.00 6.53
418 420 3.512516 GCATCTCCAACAGGCGCC 61.513 66.667 21.89 21.89 0.00 6.53
419 421 2.825836 CATCTCCAACAGGCGCCC 60.826 66.667 26.15 5.07 0.00 6.13
420 422 3.329889 ATCTCCAACAGGCGCCCA 61.330 61.111 26.15 0.00 0.00 5.36
421 423 2.905996 ATCTCCAACAGGCGCCCAA 61.906 57.895 26.15 0.88 0.00 4.12
422 424 2.424842 ATCTCCAACAGGCGCCCAAA 62.425 55.000 26.15 1.70 0.00 3.28
423 425 2.123683 TCCAACAGGCGCCCAAAA 60.124 55.556 26.15 0.41 0.00 2.44
424 426 1.743321 CTCCAACAGGCGCCCAAAAA 61.743 55.000 26.15 3.57 0.00 1.94
425 427 1.300853 CCAACAGGCGCCCAAAAAG 60.301 57.895 26.15 8.61 0.00 2.27
426 428 1.739049 CAACAGGCGCCCAAAAAGA 59.261 52.632 26.15 0.00 0.00 2.52
427 429 0.103937 CAACAGGCGCCCAAAAAGAA 59.896 50.000 26.15 0.00 0.00 2.52
428 430 0.104120 AACAGGCGCCCAAAAAGAAC 59.896 50.000 26.15 0.00 0.00 3.01
429 431 0.755327 ACAGGCGCCCAAAAAGAACT 60.755 50.000 26.15 0.00 0.00 3.01
430 432 0.039165 CAGGCGCCCAAAAAGAACTC 60.039 55.000 26.15 0.00 0.00 3.01
431 433 1.179174 AGGCGCCCAAAAAGAACTCC 61.179 55.000 26.15 0.00 0.00 3.85
432 434 1.081442 GCGCCCAAAAAGAACTCCG 60.081 57.895 0.00 0.00 0.00 4.63
433 435 1.081442 CGCCCAAAAAGAACTCCGC 60.081 57.895 0.00 0.00 0.00 5.54
434 436 1.081442 GCCCAAAAAGAACTCCGCG 60.081 57.895 0.00 0.00 0.00 6.46
435 437 1.081442 CCCAAAAAGAACTCCGCGC 60.081 57.895 0.00 0.00 0.00 6.86
436 438 1.652012 CCAAAAAGAACTCCGCGCA 59.348 52.632 8.75 0.00 0.00 6.09
437 439 0.660300 CCAAAAAGAACTCCGCGCAC 60.660 55.000 8.75 0.00 0.00 5.34
438 440 0.307760 CAAAAAGAACTCCGCGCACT 59.692 50.000 8.75 0.00 0.00 4.40
439 441 1.529438 CAAAAAGAACTCCGCGCACTA 59.471 47.619 8.75 0.00 0.00 2.74
440 442 1.873698 AAAAGAACTCCGCGCACTAA 58.126 45.000 8.75 0.00 0.00 2.24
441 443 1.873698 AAAGAACTCCGCGCACTAAA 58.126 45.000 8.75 0.00 0.00 1.85
442 444 1.873698 AAGAACTCCGCGCACTAAAA 58.126 45.000 8.75 0.00 0.00 1.52
443 445 2.094762 AGAACTCCGCGCACTAAAAT 57.905 45.000 8.75 0.00 0.00 1.82
444 446 2.423577 AGAACTCCGCGCACTAAAATT 58.576 42.857 8.75 0.00 0.00 1.82
445 447 2.812011 AGAACTCCGCGCACTAAAATTT 59.188 40.909 8.75 0.00 0.00 1.82
446 448 3.252458 AGAACTCCGCGCACTAAAATTTT 59.748 39.130 8.75 8.75 0.00 1.82
447 449 2.928694 ACTCCGCGCACTAAAATTTTG 58.071 42.857 13.76 6.30 0.00 2.44
448 450 2.292292 ACTCCGCGCACTAAAATTTTGT 59.708 40.909 13.76 6.89 0.00 2.83
449 451 3.243267 ACTCCGCGCACTAAAATTTTGTT 60.243 39.130 13.76 0.00 0.00 2.83
450 452 3.707793 TCCGCGCACTAAAATTTTGTTT 58.292 36.364 13.76 0.00 0.00 2.83
451 453 4.113354 TCCGCGCACTAAAATTTTGTTTT 58.887 34.783 13.76 0.00 0.00 2.43
452 454 4.567159 TCCGCGCACTAAAATTTTGTTTTT 59.433 33.333 13.76 0.00 33.56 1.94
467 469 4.277593 TTTTTGGGCGCCGCACAG 62.278 61.111 22.54 0.00 45.08 3.66
477 479 4.383861 CCGCACAGCTCCAGCAGA 62.384 66.667 0.48 0.00 45.16 4.26
478 480 2.125229 CGCACAGCTCCAGCAGAT 60.125 61.111 0.48 0.00 45.16 2.90
479 481 2.461945 CGCACAGCTCCAGCAGATG 61.462 63.158 0.48 0.00 44.80 2.90
480 482 2.762234 GCACAGCTCCAGCAGATGC 61.762 63.158 0.48 3.86 42.85 3.91
490 492 4.738198 GCAGATGCTGTAGCGCTA 57.262 55.556 14.45 14.45 45.83 4.26
491 493 2.977700 GCAGATGCTGTAGCGCTAA 58.022 52.632 20.73 3.40 45.83 3.09
492 494 1.290203 GCAGATGCTGTAGCGCTAAA 58.710 50.000 20.73 13.83 45.83 1.85
493 495 1.665679 GCAGATGCTGTAGCGCTAAAA 59.334 47.619 20.73 9.85 45.83 1.52
494 496 2.289002 GCAGATGCTGTAGCGCTAAAAT 59.711 45.455 20.73 4.93 45.83 1.82
495 497 3.242870 GCAGATGCTGTAGCGCTAAAATT 60.243 43.478 20.73 3.16 45.83 1.82
496 498 4.731773 GCAGATGCTGTAGCGCTAAAATTT 60.732 41.667 20.73 4.34 45.83 1.82
497 499 5.335127 CAGATGCTGTAGCGCTAAAATTTT 58.665 37.500 20.73 8.75 45.83 1.82
498 500 5.801947 CAGATGCTGTAGCGCTAAAATTTTT 59.198 36.000 20.73 0.83 45.83 1.94
525 527 2.828784 CGCTGAAAAACGCTATCGC 58.171 52.632 0.00 0.00 39.84 4.58
547 549 2.184448 CGCAGCATATTTTGGGTTTCG 58.816 47.619 0.00 0.00 0.00 3.46
548 550 2.539476 GCAGCATATTTTGGGTTTCGG 58.461 47.619 0.00 0.00 0.00 4.30
549 551 2.165437 GCAGCATATTTTGGGTTTCGGA 59.835 45.455 0.00 0.00 0.00 4.55
550 552 3.181476 GCAGCATATTTTGGGTTTCGGAT 60.181 43.478 0.00 0.00 0.00 4.18
551 553 4.680440 GCAGCATATTTTGGGTTTCGGATT 60.680 41.667 0.00 0.00 0.00 3.01
552 554 4.805192 CAGCATATTTTGGGTTTCGGATTG 59.195 41.667 0.00 0.00 0.00 2.67
553 555 3.555547 GCATATTTTGGGTTTCGGATTGC 59.444 43.478 0.00 0.00 0.00 3.56
554 556 2.362169 ATTTTGGGTTTCGGATTGCG 57.638 45.000 0.00 0.00 0.00 4.85
555 557 0.319125 TTTTGGGTTTCGGATTGCGC 60.319 50.000 0.00 0.00 0.00 6.09
556 558 2.465097 TTTGGGTTTCGGATTGCGCG 62.465 55.000 0.00 0.00 0.00 6.86
557 559 4.829518 GGGTTTCGGATTGCGCGC 62.830 66.667 27.26 27.26 0.00 6.86
569 571 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
570 572 3.046460 GCGCGCGCTTCACAATTTG 62.046 57.895 44.38 10.35 38.26 2.32
571 573 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
572 574 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
573 575 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
574 576 1.608093 CGCGCTTCACAATTTGCACC 61.608 55.000 5.56 0.00 0.00 5.01
575 577 0.597118 GCGCTTCACAATTTGCACCA 60.597 50.000 0.00 0.00 0.00 4.17
576 578 1.936203 GCGCTTCACAATTTGCACCAT 60.936 47.619 0.00 0.00 0.00 3.55
577 579 1.722464 CGCTTCACAATTTGCACCATG 59.278 47.619 0.00 0.00 0.00 3.66
578 580 2.758009 GCTTCACAATTTGCACCATGT 58.242 42.857 0.00 0.00 0.00 3.21
579 581 2.477375 GCTTCACAATTTGCACCATGTG 59.523 45.455 15.35 15.35 43.42 3.21
590 592 0.854062 CACCATGTGCTTTTTGTGCG 59.146 50.000 0.00 0.00 0.00 5.34
591 593 0.875474 ACCATGTGCTTTTTGTGCGC 60.875 50.000 0.00 0.00 40.87 6.09
592 594 1.483806 CATGTGCTTTTTGTGCGCG 59.516 52.632 0.00 0.00 43.10 6.86
593 595 2.302230 ATGTGCTTTTTGTGCGCGC 61.302 52.632 27.26 27.26 43.10 6.86
594 596 4.033481 GTGCTTTTTGTGCGCGCG 62.033 61.111 28.44 28.44 0.00 6.86
595 597 4.544689 TGCTTTTTGTGCGCGCGT 62.545 55.556 32.35 0.00 0.00 6.01
596 598 3.319316 GCTTTTTGTGCGCGCGTT 61.319 55.556 32.35 0.00 0.00 4.84
597 599 2.855280 GCTTTTTGTGCGCGCGTTT 61.855 52.632 32.35 0.00 0.00 3.60
598 600 1.628463 CTTTTTGTGCGCGCGTTTT 59.372 47.368 32.35 0.00 0.00 2.43
599 601 0.024364 CTTTTTGTGCGCGCGTTTTT 59.976 45.000 32.35 0.00 0.00 1.94
615 617 1.285578 TTTTTGGCGTCTGCAAAAGC 58.714 45.000 0.00 0.00 44.57 3.51
616 618 0.174389 TTTTGGCGTCTGCAAAAGCA 59.826 45.000 0.00 0.00 44.57 3.91
617 619 0.174389 TTTGGCGTCTGCAAAAGCAA 59.826 45.000 0.00 0.00 39.10 3.91
618 620 0.388659 TTGGCGTCTGCAAAAGCAAT 59.611 45.000 0.00 0.00 45.35 3.56
619 621 0.318869 TGGCGTCTGCAAAAGCAATG 60.319 50.000 0.00 0.00 45.35 2.82
620 622 0.318955 GGCGTCTGCAAAAGCAATGT 60.319 50.000 0.00 0.00 45.35 2.71
621 623 1.490621 GCGTCTGCAAAAGCAATGTT 58.509 45.000 0.00 0.00 42.15 2.71
622 624 1.190763 GCGTCTGCAAAAGCAATGTTG 59.809 47.619 0.00 0.00 42.15 3.33
623 625 1.788308 CGTCTGCAAAAGCAATGTTGG 59.212 47.619 0.00 0.00 0.00 3.77
624 626 2.799207 CGTCTGCAAAAGCAATGTTGGT 60.799 45.455 0.00 0.00 41.27 3.67
625 627 2.796593 GTCTGCAAAAGCAATGTTGGTC 59.203 45.455 0.00 0.00 38.04 4.02
626 628 2.694628 TCTGCAAAAGCAATGTTGGTCT 59.305 40.909 0.00 0.00 38.04 3.85
627 629 3.054878 CTGCAAAAGCAATGTTGGTCTC 58.945 45.455 0.00 0.00 38.04 3.36
628 630 2.053627 GCAAAAGCAATGTTGGTCTCG 58.946 47.619 0.00 0.00 38.04 4.04
629 631 2.287547 GCAAAAGCAATGTTGGTCTCGA 60.288 45.455 0.00 0.00 38.04 4.04
630 632 3.300009 CAAAAGCAATGTTGGTCTCGAC 58.700 45.455 0.00 0.00 38.04 4.20
631 633 1.148310 AAGCAATGTTGGTCTCGACG 58.852 50.000 0.00 0.00 38.04 5.12
632 634 1.132640 GCAATGTTGGTCTCGACGC 59.867 57.895 0.00 0.00 0.00 5.19
633 635 1.565156 GCAATGTTGGTCTCGACGCA 61.565 55.000 0.00 0.00 0.00 5.24
634 636 0.163788 CAATGTTGGTCTCGACGCAC 59.836 55.000 0.00 0.00 0.00 5.34
635 637 0.033504 AATGTTGGTCTCGACGCACT 59.966 50.000 0.00 0.00 0.00 4.40
636 638 0.885879 ATGTTGGTCTCGACGCACTA 59.114 50.000 0.00 0.00 0.00 2.74
637 639 0.669619 TGTTGGTCTCGACGCACTAA 59.330 50.000 0.00 0.00 0.00 2.24
638 640 1.067364 TGTTGGTCTCGACGCACTAAA 59.933 47.619 0.00 0.00 0.00 1.85
639 641 2.129607 GTTGGTCTCGACGCACTAAAA 58.870 47.619 0.00 0.00 0.00 1.52
640 642 2.512485 TGGTCTCGACGCACTAAAAA 57.488 45.000 0.00 0.00 0.00 1.94
641 643 3.034721 TGGTCTCGACGCACTAAAAAT 57.965 42.857 0.00 0.00 0.00 1.82
642 644 2.734606 TGGTCTCGACGCACTAAAAATG 59.265 45.455 0.00 0.00 0.00 2.32
643 645 2.474032 GGTCTCGACGCACTAAAAATGC 60.474 50.000 0.00 0.00 39.81 3.56
644 646 2.412089 GTCTCGACGCACTAAAAATGCT 59.588 45.455 0.00 0.00 41.10 3.79
645 647 3.611113 GTCTCGACGCACTAAAAATGCTA 59.389 43.478 0.00 0.00 41.10 3.49
646 648 4.090930 GTCTCGACGCACTAAAAATGCTAA 59.909 41.667 0.00 0.00 41.10 3.09
647 649 4.687018 TCTCGACGCACTAAAAATGCTAAA 59.313 37.500 0.00 0.00 41.10 1.85
648 650 4.953269 TCGACGCACTAAAAATGCTAAAG 58.047 39.130 0.00 0.00 41.10 1.85
649 651 4.449743 TCGACGCACTAAAAATGCTAAAGT 59.550 37.500 0.00 0.00 41.10 2.66
650 652 4.549599 CGACGCACTAAAAATGCTAAAGTG 59.450 41.667 0.00 0.00 41.10 3.16
651 653 5.613795 CGACGCACTAAAAATGCTAAAGTGA 60.614 40.000 5.03 0.00 39.93 3.41
652 654 5.449304 ACGCACTAAAAATGCTAAAGTGAC 58.551 37.500 5.03 0.00 39.93 3.67
653 655 4.549599 CGCACTAAAAATGCTAAAGTGACG 59.450 41.667 5.03 4.59 39.93 4.35
654 656 4.320953 GCACTAAAAATGCTAAAGTGACGC 59.679 41.667 5.03 0.00 39.93 5.19
655 657 4.549599 CACTAAAAATGCTAAAGTGACGCG 59.450 41.667 3.53 3.53 39.93 6.01
656 658 1.963747 AAAATGCTAAAGTGACGCGC 58.036 45.000 5.73 0.00 0.00 6.86
657 659 1.156736 AAATGCTAAAGTGACGCGCT 58.843 45.000 5.73 0.00 0.00 5.92
658 660 2.004583 AATGCTAAAGTGACGCGCTA 57.995 45.000 5.73 0.00 0.00 4.26
659 661 2.225068 ATGCTAAAGTGACGCGCTAT 57.775 45.000 5.73 0.00 0.00 2.97
660 662 2.855660 TGCTAAAGTGACGCGCTATA 57.144 45.000 5.73 0.00 0.00 1.31
661 663 3.153676 TGCTAAAGTGACGCGCTATAA 57.846 42.857 5.73 0.00 0.00 0.98
662 664 3.713288 TGCTAAAGTGACGCGCTATAAT 58.287 40.909 5.73 0.00 0.00 1.28
663 665 4.116961 TGCTAAAGTGACGCGCTATAATT 58.883 39.130 5.73 0.00 0.00 1.40
664 666 4.569162 TGCTAAAGTGACGCGCTATAATTT 59.431 37.500 5.73 4.61 0.00 1.82
665 667 5.064198 TGCTAAAGTGACGCGCTATAATTTT 59.936 36.000 5.73 0.84 0.00 1.82
666 668 5.963586 GCTAAAGTGACGCGCTATAATTTTT 59.036 36.000 5.73 0.00 0.00 1.94
667 669 7.121272 GCTAAAGTGACGCGCTATAATTTTTA 58.879 34.615 5.73 0.43 0.00 1.52
668 670 7.797123 GCTAAAGTGACGCGCTATAATTTTTAT 59.203 33.333 5.73 0.00 0.00 1.40
669 671 9.646336 CTAAAGTGACGCGCTATAATTTTTATT 57.354 29.630 5.73 0.00 0.00 1.40
670 672 7.892445 AAGTGACGCGCTATAATTTTTATTG 57.108 32.000 5.73 0.00 0.00 1.90
671 673 6.427150 AGTGACGCGCTATAATTTTTATTGG 58.573 36.000 5.73 0.00 0.00 3.16
672 674 5.623673 GTGACGCGCTATAATTTTTATTGGG 59.376 40.000 5.73 0.00 0.00 4.12
673 675 4.542735 ACGCGCTATAATTTTTATTGGGC 58.457 39.130 5.73 15.46 36.11 5.36
674 676 3.917985 CGCGCTATAATTTTTATTGGGCC 59.082 43.478 17.85 0.00 36.09 5.80
675 677 4.242475 GCGCTATAATTTTTATTGGGCCC 58.758 43.478 17.59 17.59 34.48 5.80
676 678 4.021456 GCGCTATAATTTTTATTGGGCCCT 60.021 41.667 25.70 5.93 34.48 5.19
677 679 5.184287 GCGCTATAATTTTTATTGGGCCCTA 59.816 40.000 25.70 17.71 34.48 3.53
678 680 6.294843 GCGCTATAATTTTTATTGGGCCCTAA 60.295 38.462 25.70 16.15 34.48 2.69
679 681 7.662897 CGCTATAATTTTTATTGGGCCCTAAA 58.337 34.615 25.70 17.46 0.00 1.85
680 682 8.311109 CGCTATAATTTTTATTGGGCCCTAAAT 58.689 33.333 25.70 17.86 0.00 1.40
687 689 9.625747 ATTTTTATTGGGCCCTAAATTATTGTG 57.374 29.630 25.70 0.00 0.00 3.33
688 690 4.687901 ATTGGGCCCTAAATTATTGTGC 57.312 40.909 25.70 0.00 0.00 4.57
689 691 2.028130 TGGGCCCTAAATTATTGTGCG 58.972 47.619 25.70 0.00 0.00 5.34
690 692 1.339929 GGGCCCTAAATTATTGTGCGG 59.660 52.381 17.04 0.00 0.00 5.69
691 693 1.269569 GGCCCTAAATTATTGTGCGGC 60.270 52.381 0.00 0.00 0.00 6.53
692 694 1.269569 GCCCTAAATTATTGTGCGGCC 60.270 52.381 0.00 0.00 0.00 6.13
693 695 1.001815 CCCTAAATTATTGTGCGGCCG 60.002 52.381 24.05 24.05 0.00 6.13
694 696 1.673920 CCTAAATTATTGTGCGGCCGT 59.326 47.619 28.70 9.01 0.00 5.68
695 697 2.098443 CCTAAATTATTGTGCGGCCGTT 59.902 45.455 28.70 12.10 0.00 4.44
696 698 2.271821 AAATTATTGTGCGGCCGTTC 57.728 45.000 28.70 19.86 0.00 3.95
697 699 0.098025 AATTATTGTGCGGCCGTTCG 59.902 50.000 28.70 0.27 0.00 3.95
698 700 0.741574 ATTATTGTGCGGCCGTTCGA 60.742 50.000 28.70 19.33 0.00 3.71
699 701 1.355796 TTATTGTGCGGCCGTTCGAG 61.356 55.000 28.70 0.00 0.00 4.04
700 702 2.215465 TATTGTGCGGCCGTTCGAGA 62.215 55.000 28.70 14.04 0.00 4.04
701 703 2.852495 ATTGTGCGGCCGTTCGAGAT 62.852 55.000 28.70 10.79 0.00 2.75
702 704 3.554692 GTGCGGCCGTTCGAGATG 61.555 66.667 28.70 0.00 0.00 2.90
705 707 2.956964 CGGCCGTTCGAGATGCTC 60.957 66.667 19.50 0.00 0.00 4.26
706 708 2.496817 GGCCGTTCGAGATGCTCT 59.503 61.111 0.00 0.00 0.00 4.09
707 709 1.734137 GGCCGTTCGAGATGCTCTA 59.266 57.895 0.00 0.00 0.00 2.43
708 710 0.102481 GGCCGTTCGAGATGCTCTAA 59.898 55.000 0.00 0.00 0.00 2.10
709 711 1.470979 GGCCGTTCGAGATGCTCTAAA 60.471 52.381 0.00 0.00 0.00 1.85
710 712 1.588861 GCCGTTCGAGATGCTCTAAAC 59.411 52.381 0.00 0.00 0.00 2.01
711 713 2.876091 CCGTTCGAGATGCTCTAAACA 58.124 47.619 0.00 0.00 0.00 2.83
712 714 2.599082 CCGTTCGAGATGCTCTAAACAC 59.401 50.000 0.00 0.00 0.00 3.32
713 715 3.502920 CGTTCGAGATGCTCTAAACACT 58.497 45.455 0.00 0.00 0.00 3.55
714 716 3.301906 CGTTCGAGATGCTCTAAACACTG 59.698 47.826 0.00 0.00 0.00 3.66
715 717 3.510388 TCGAGATGCTCTAAACACTGG 57.490 47.619 0.00 0.00 0.00 4.00
716 718 3.089284 TCGAGATGCTCTAAACACTGGA 58.911 45.455 0.00 0.00 0.00 3.86
717 719 3.701542 TCGAGATGCTCTAAACACTGGAT 59.298 43.478 0.00 0.00 0.00 3.41
720 722 5.460419 CGAGATGCTCTAAACACTGGATAAC 59.540 44.000 0.00 0.00 0.00 1.89
894 896 3.447950 TCTACCCTTTACTCCCCTTCAC 58.552 50.000 0.00 0.00 0.00 3.18
1158 1164 0.716591 TCACCTACTCACTCCCCCAT 59.283 55.000 0.00 0.00 0.00 4.00
1235 1241 0.740868 TGGATGAGCTTAGTGTGCGC 60.741 55.000 0.00 0.00 35.28 6.09
1261 1267 1.449778 GGAGGGCTGTAGGCGTTTC 60.450 63.158 2.17 0.00 42.94 2.78
1262 1268 1.449778 GAGGGCTGTAGGCGTTTCC 60.450 63.158 2.17 0.00 42.94 3.13
1281 1296 1.606601 GGCTTGTCCCCTGTTTCCC 60.607 63.158 0.00 0.00 0.00 3.97
1297 1313 1.344065 TCCCGCTTTGTCTTAGTGGA 58.656 50.000 4.11 0.00 44.32 4.02
1313 1329 1.884926 GGATTCGGAGGCGCTTCTG 60.885 63.158 21.53 21.53 0.00 3.02
1351 1367 3.754323 TGGTAAATGGAGCGGTTGTTTAG 59.246 43.478 0.00 0.00 0.00 1.85
1467 1486 5.107298 GCAGTATTTCTGACTGACTGTGAAC 60.107 44.000 6.96 0.00 46.01 3.18
1602 1621 2.402564 ACAGTCTCCAGGTCATATGGG 58.597 52.381 2.13 0.00 38.44 4.00
1658 1677 4.530710 AGCGAGTAATTGGTAAGTGTCA 57.469 40.909 0.00 0.00 0.00 3.58
1667 1686 2.321719 TGGTAAGTGTCAGGTGCTACA 58.678 47.619 0.00 0.00 0.00 2.74
1754 1773 0.954452 CGGGATTGAGGGCTTATTGC 59.046 55.000 0.00 0.00 41.94 3.56
1844 1863 6.969473 GGAAGACTGCTAATGCTTCAAATTAC 59.031 38.462 0.00 0.00 38.72 1.89
2123 2142 4.142687 CCGATTAGGTTTTCATCGCAAAGT 60.143 41.667 0.00 0.00 38.79 2.66
2459 2482 1.136891 ACTTCCTTTTGCTTGCACACC 59.863 47.619 0.00 0.00 0.00 4.16
2485 2510 7.008332 TGTAGATTTAATACTCCCTCCGATCA 58.992 38.462 0.00 0.00 0.00 2.92
2500 2525 5.163754 CCTCCGATCAAAAATAAGTGTCACC 60.164 44.000 0.00 0.00 0.00 4.02
2557 2582 5.705609 AACTGCGACACTTATTTTGGATT 57.294 34.783 0.00 0.00 0.00 3.01
2567 2592 5.126061 CACTTATTTTGGATTGGAGGGAGTG 59.874 44.000 0.00 0.00 0.00 3.51
3166 3191 5.424573 GGGAGGATACAACAGGTTAGTACTT 59.575 44.000 0.00 0.00 41.41 2.24
3230 3255 6.842163 AGCTTTTGACCAGTTATGTTAATCG 58.158 36.000 0.00 0.00 0.00 3.34
3342 3367 1.629043 TCTCCCAACTGCTCGTAAGT 58.371 50.000 0.00 0.00 39.48 2.24
3347 3372 4.501071 TCCCAACTGCTCGTAAGTATTTC 58.499 43.478 0.00 0.00 39.48 2.17
3348 3373 4.020928 TCCCAACTGCTCGTAAGTATTTCA 60.021 41.667 0.00 0.00 39.48 2.69
3351 3376 5.580691 CCAACTGCTCGTAAGTATTTCATGA 59.419 40.000 0.00 0.00 39.48 3.07
3405 3437 4.700213 TGGGCTTAGTTAGAGAATTTGTGC 59.300 41.667 0.00 0.00 0.00 4.57
3650 3696 0.179234 TCTGTGCTTTGTCCGTTCCA 59.821 50.000 0.00 0.00 0.00 3.53
3887 3937 6.490566 AAGTACCGGTGATGACAAAATTAC 57.509 37.500 19.93 1.69 0.00 1.89
3892 3942 6.574350 ACCGGTGATGACAAAATTACAAAAA 58.426 32.000 6.12 0.00 0.00 1.94
4106 4165 5.908341 TGTTGGTTTCAAAAGATGGGTTAC 58.092 37.500 0.00 0.00 34.28 2.50
4207 4266 8.303876 GGTTTTATTGGTTCATGTTGATACTGT 58.696 33.333 0.00 0.00 0.00 3.55
4247 4322 3.942130 ACCCACTTAAAGCTGCATTTC 57.058 42.857 1.02 0.00 0.00 2.17
4351 4432 9.190858 GTTTATGTGATATCTGTTTTTGTTGCA 57.809 29.630 3.98 0.00 0.00 4.08
4505 4586 3.985925 GTCCAGAAAATGCAAAGCAGAAG 59.014 43.478 0.00 0.00 43.65 2.85
4660 4741 7.831753 TGGCTCATATAGACTATAAACTCTGC 58.168 38.462 6.29 5.79 32.57 4.26
4756 4837 5.395990 CCCAATTGCTGCCTTAATGATTTCT 60.396 40.000 0.00 0.00 0.00 2.52
4995 5077 3.787634 CGATTTTGCCGATGTTCATCTTG 59.212 43.478 10.44 3.82 0.00 3.02
5052 5145 3.632333 TCCTGATTGGAGATGTACGTCT 58.368 45.455 17.60 17.60 40.56 4.18
5068 5161 5.747197 TGTACGTCTGTCTTTTCTCTTGTTC 59.253 40.000 0.00 0.00 0.00 3.18
5118 5211 1.918293 CCCTGGTACCACCTCTGCA 60.918 63.158 11.60 0.00 39.58 4.41
5166 5259 4.473520 CCCGCTGCCACCGATCTT 62.474 66.667 0.00 0.00 0.00 2.40
5178 5271 3.043586 CACCGATCTTGTAGCGTATCAC 58.956 50.000 0.00 0.00 34.43 3.06
5311 5404 2.228822 GGTACTTTCCAGAACGTCGGTA 59.771 50.000 0.00 0.00 0.00 4.02
5328 5430 0.603707 GTACCTCACAGCAGCAGCAA 60.604 55.000 3.17 0.00 45.49 3.91
5329 5431 0.603707 TACCTCACAGCAGCAGCAAC 60.604 55.000 3.17 0.00 45.49 4.17
5330 5432 1.895231 CCTCACAGCAGCAGCAACA 60.895 57.895 3.17 0.00 45.49 3.33
5331 5433 1.574925 CTCACAGCAGCAGCAACAG 59.425 57.895 3.17 0.00 45.49 3.16
5332 5434 2.050351 CACAGCAGCAGCAACAGC 60.050 61.111 3.17 0.00 45.49 4.40
5333 5435 2.517638 ACAGCAGCAGCAACAGCA 60.518 55.556 3.17 0.00 45.49 4.41
5390 5492 5.497474 GAGGGAGCTCACCTTTGTAATTTA 58.503 41.667 20.63 0.00 38.79 1.40
5395 5497 5.641155 AGCTCACCTTTGTAATTTAACCCT 58.359 37.500 0.00 0.00 0.00 4.34
5510 5634 3.533606 ATCTGTGTCTGTAGTGATGCC 57.466 47.619 0.00 0.00 0.00 4.40
5553 5677 9.536558 TCGAATTTTATGTTATTTTCTCGTGTG 57.463 29.630 0.00 0.00 0.00 3.82
5566 5690 6.904463 TTTCTCGTGTGTATATATAGGCCA 57.096 37.500 5.01 0.00 0.00 5.36
5570 5694 3.767673 CGTGTGTATATATAGGCCACCCT 59.232 47.826 5.01 0.00 45.61 4.34
5571 5695 4.142227 CGTGTGTATATATAGGCCACCCTC 60.142 50.000 5.01 0.00 41.75 4.30
5607 5732 4.670896 TGTGATCGATGAGGCTAATTCA 57.329 40.909 0.54 0.00 0.00 2.57
5621 5746 7.126421 TGAGGCTAATTCAAGGAGTTTATCTCT 59.874 37.037 0.00 0.00 42.40 3.10
5653 5778 1.296727 CACTGCAGCATCGATCACAT 58.703 50.000 15.27 0.00 0.00 3.21
5700 5826 7.991084 AAGATGACATGACTCATTTGAGAAA 57.009 32.000 14.29 2.50 44.74 2.52
5734 5860 1.061546 AAATGTCGGGTGGTAGGTGT 58.938 50.000 0.00 0.00 0.00 4.16
5773 5899 2.378038 GCTTATCATTGTGGGAGCCAA 58.622 47.619 0.00 0.00 34.18 4.52
5818 5944 0.179000 GGGATGAGGCGAAGACATGT 59.821 55.000 0.00 0.00 39.87 3.21
5831 5957 1.066430 AGACATGTACGCCGGTGAATT 60.066 47.619 24.59 1.03 0.00 2.17
5852 5978 3.085223 CCCAGCTTCAGGGCTCTT 58.915 61.111 0.00 0.00 41.00 2.85
5853 5979 1.381851 CCCAGCTTCAGGGCTCTTT 59.618 57.895 0.00 0.00 41.00 2.52
5986 6112 2.631062 CGACTAGCTCTCCTCTCCTCTA 59.369 54.545 0.00 0.00 0.00 2.43
6022 6148 2.393646 ACTAGCTCAGATCCACCCTTC 58.606 52.381 0.00 0.00 0.00 3.46
6341 6467 2.236395 CGTCTTGTCTCCTTAATGGGGT 59.764 50.000 0.00 0.00 37.63 4.95
6346 6472 3.256704 TGTCTCCTTAATGGGGTGTCTT 58.743 45.455 0.00 0.00 37.63 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.047718 TAACCCTCTCAGCGACGCG 62.048 63.158 15.18 3.53 0.00 6.01
11 12 1.516603 GTAACCCTCTCAGCGACGC 60.517 63.158 13.03 13.03 0.00 5.19
12 13 1.226323 CGTAACCCTCTCAGCGACG 60.226 63.158 0.00 0.00 0.00 5.12
13 14 1.516603 GCGTAACCCTCTCAGCGAC 60.517 63.158 0.00 0.00 0.00 5.19
15 16 1.226717 GAGCGTAACCCTCTCAGCG 60.227 63.158 0.00 0.00 0.00 5.18
16 17 1.142097 GGAGCGTAACCCTCTCAGC 59.858 63.158 0.00 0.00 0.00 4.26
17 18 0.895530 TTGGAGCGTAACCCTCTCAG 59.104 55.000 0.00 0.00 0.00 3.35
18 19 0.606604 GTTGGAGCGTAACCCTCTCA 59.393 55.000 0.00 0.00 0.00 3.27
19 20 0.458025 CGTTGGAGCGTAACCCTCTC 60.458 60.000 0.00 0.00 0.00 3.20
20 21 0.896940 TCGTTGGAGCGTAACCCTCT 60.897 55.000 0.00 0.00 0.00 3.69
21 22 0.037975 TTCGTTGGAGCGTAACCCTC 60.038 55.000 0.00 0.00 0.00 4.30
22 23 0.393820 TTTCGTTGGAGCGTAACCCT 59.606 50.000 0.00 0.00 0.00 4.34
23 24 1.228533 TTTTCGTTGGAGCGTAACCC 58.771 50.000 0.00 0.00 0.00 4.11
24 25 2.740447 AGATTTTCGTTGGAGCGTAACC 59.260 45.455 0.00 0.00 0.00 2.85
25 26 4.400036 AAGATTTTCGTTGGAGCGTAAC 57.600 40.909 0.00 0.00 0.00 2.50
26 27 5.209240 CAAAAGATTTTCGTTGGAGCGTAA 58.791 37.500 0.00 0.00 0.00 3.18
27 28 4.319911 CCAAAAGATTTTCGTTGGAGCGTA 60.320 41.667 7.02 0.00 38.13 4.42
28 29 3.550030 CCAAAAGATTTTCGTTGGAGCGT 60.550 43.478 7.02 0.00 38.13 5.07
29 30 2.979813 CCAAAAGATTTTCGTTGGAGCG 59.020 45.455 7.02 0.00 38.13 5.03
30 31 3.243737 ACCCAAAAGATTTTCGTTGGAGC 60.244 43.478 12.05 0.00 38.13 4.70
31 32 4.584327 ACCCAAAAGATTTTCGTTGGAG 57.416 40.909 12.05 7.02 38.13 3.86
32 33 5.105310 TGAAACCCAAAAGATTTTCGTTGGA 60.105 36.000 12.05 0.00 38.13 3.53
33 34 5.112686 TGAAACCCAAAAGATTTTCGTTGG 58.887 37.500 0.00 0.00 36.67 3.77
34 35 6.701400 AGATGAAACCCAAAAGATTTTCGTTG 59.299 34.615 0.00 0.00 31.76 4.10
35 36 6.816136 AGATGAAACCCAAAAGATTTTCGTT 58.184 32.000 0.00 0.00 31.76 3.85
36 37 6.405278 AGATGAAACCCAAAAGATTTTCGT 57.595 33.333 0.00 0.00 31.76 3.85
37 38 5.863935 GGAGATGAAACCCAAAAGATTTTCG 59.136 40.000 0.00 0.00 31.76 3.46
38 39 6.758254 TGGAGATGAAACCCAAAAGATTTTC 58.242 36.000 0.00 0.00 0.00 2.29
39 40 6.745794 TGGAGATGAAACCCAAAAGATTTT 57.254 33.333 0.00 0.00 0.00 1.82
40 41 6.940430 ATGGAGATGAAACCCAAAAGATTT 57.060 33.333 0.00 0.00 33.15 2.17
41 42 8.434589 TTTATGGAGATGAAACCCAAAAGATT 57.565 30.769 0.00 0.00 33.15 2.40
42 43 8.434589 TTTTATGGAGATGAAACCCAAAAGAT 57.565 30.769 0.00 0.00 33.15 2.40
43 44 7.508977 ACTTTTATGGAGATGAAACCCAAAAGA 59.491 33.333 18.12 0.00 38.27 2.52
44 45 7.599998 CACTTTTATGGAGATGAAACCCAAAAG 59.400 37.037 1.51 1.51 39.84 2.27
45 46 7.441017 CACTTTTATGGAGATGAAACCCAAAA 58.559 34.615 0.00 0.00 33.15 2.44
46 47 6.014669 CCACTTTTATGGAGATGAAACCCAAA 60.015 38.462 0.00 0.00 43.02 3.28
47 48 5.480073 CCACTTTTATGGAGATGAAACCCAA 59.520 40.000 0.00 0.00 43.02 4.12
48 49 5.016173 CCACTTTTATGGAGATGAAACCCA 58.984 41.667 0.00 0.00 43.02 4.51
49 50 4.142160 GCCACTTTTATGGAGATGAAACCC 60.142 45.833 0.00 0.00 43.02 4.11
50 51 4.706962 AGCCACTTTTATGGAGATGAAACC 59.293 41.667 0.00 0.00 43.02 3.27
51 52 5.415701 TCAGCCACTTTTATGGAGATGAAAC 59.584 40.000 0.00 0.00 43.02 2.78
52 53 5.569355 TCAGCCACTTTTATGGAGATGAAA 58.431 37.500 0.00 0.00 43.02 2.69
53 54 5.178096 TCAGCCACTTTTATGGAGATGAA 57.822 39.130 0.00 0.00 43.02 2.57
54 55 4.225942 ACTCAGCCACTTTTATGGAGATGA 59.774 41.667 0.00 0.00 43.02 2.92
55 56 4.521146 ACTCAGCCACTTTTATGGAGATG 58.479 43.478 0.00 0.00 43.02 2.90
56 57 4.851639 ACTCAGCCACTTTTATGGAGAT 57.148 40.909 0.00 0.00 43.02 2.75
57 58 4.640771 AACTCAGCCACTTTTATGGAGA 57.359 40.909 0.00 0.00 43.02 3.71
58 59 5.712152 AAAACTCAGCCACTTTTATGGAG 57.288 39.130 0.00 0.00 43.02 3.86
59 60 6.293735 CGTAAAAACTCAGCCACTTTTATGGA 60.294 38.462 0.00 0.00 43.02 3.41
60 61 5.856455 CGTAAAAACTCAGCCACTTTTATGG 59.144 40.000 0.00 0.00 43.26 2.74
61 62 6.435428 ACGTAAAAACTCAGCCACTTTTATG 58.565 36.000 0.00 0.00 36.76 1.90
62 63 6.628919 ACGTAAAAACTCAGCCACTTTTAT 57.371 33.333 0.00 0.00 0.00 1.40
63 64 6.259638 CAACGTAAAAACTCAGCCACTTTTA 58.740 36.000 0.00 0.00 0.00 1.52
64 65 4.976224 ACGTAAAAACTCAGCCACTTTT 57.024 36.364 0.00 0.00 0.00 2.27
65 66 4.439563 CCAACGTAAAAACTCAGCCACTTT 60.440 41.667 0.00 0.00 0.00 2.66
66 67 3.066203 CCAACGTAAAAACTCAGCCACTT 59.934 43.478 0.00 0.00 0.00 3.16
67 68 2.616842 CCAACGTAAAAACTCAGCCACT 59.383 45.455 0.00 0.00 0.00 4.00
68 69 2.857104 GCCAACGTAAAAACTCAGCCAC 60.857 50.000 0.00 0.00 0.00 5.01
69 70 1.335496 GCCAACGTAAAAACTCAGCCA 59.665 47.619 0.00 0.00 0.00 4.75
70 71 1.607148 AGCCAACGTAAAAACTCAGCC 59.393 47.619 0.00 0.00 0.00 4.85
71 72 2.661979 CGAGCCAACGTAAAAACTCAGC 60.662 50.000 0.00 0.00 0.00 4.26
72 73 2.661979 GCGAGCCAACGTAAAAACTCAG 60.662 50.000 0.00 0.00 35.59 3.35
73 74 1.262151 GCGAGCCAACGTAAAAACTCA 59.738 47.619 0.00 0.00 35.59 3.41
74 75 1.399343 GGCGAGCCAACGTAAAAACTC 60.399 52.381 9.58 0.00 35.81 3.01
75 76 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
76 77 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
77 78 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
78 79 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
89 90 1.869767 GATTGTGATAGGCTTGGCGAG 59.130 52.381 0.00 0.00 0.00 5.03
90 91 1.475034 GGATTGTGATAGGCTTGGCGA 60.475 52.381 0.00 0.00 0.00 5.54
91 92 0.947244 GGATTGTGATAGGCTTGGCG 59.053 55.000 0.00 0.00 0.00 5.69
92 93 2.225467 GAGGATTGTGATAGGCTTGGC 58.775 52.381 0.00 0.00 0.00 4.52
93 94 2.441001 AGGAGGATTGTGATAGGCTTGG 59.559 50.000 0.00 0.00 0.00 3.61
94 95 3.495806 GGAGGAGGATTGTGATAGGCTTG 60.496 52.174 0.00 0.00 0.00 4.01
95 96 2.708325 GGAGGAGGATTGTGATAGGCTT 59.292 50.000 0.00 0.00 0.00 4.35
96 97 2.090267 AGGAGGAGGATTGTGATAGGCT 60.090 50.000 0.00 0.00 0.00 4.58
97 98 2.334023 AGGAGGAGGATTGTGATAGGC 58.666 52.381 0.00 0.00 0.00 3.93
98 99 5.221742 GGTAAAGGAGGAGGATTGTGATAGG 60.222 48.000 0.00 0.00 0.00 2.57
99 100 5.604650 AGGTAAAGGAGGAGGATTGTGATAG 59.395 44.000 0.00 0.00 0.00 2.08
100 101 5.366768 CAGGTAAAGGAGGAGGATTGTGATA 59.633 44.000 0.00 0.00 0.00 2.15
101 102 4.164988 CAGGTAAAGGAGGAGGATTGTGAT 59.835 45.833 0.00 0.00 0.00 3.06
102 103 3.519510 CAGGTAAAGGAGGAGGATTGTGA 59.480 47.826 0.00 0.00 0.00 3.58
103 104 3.370953 CCAGGTAAAGGAGGAGGATTGTG 60.371 52.174 0.00 0.00 0.00 3.33
104 105 2.846827 CCAGGTAAAGGAGGAGGATTGT 59.153 50.000 0.00 0.00 0.00 2.71
105 106 2.173569 CCCAGGTAAAGGAGGAGGATTG 59.826 54.545 0.00 0.00 0.00 2.67
106 107 2.493091 CCCAGGTAAAGGAGGAGGATT 58.507 52.381 0.00 0.00 0.00 3.01
107 108 1.977202 GCCCAGGTAAAGGAGGAGGAT 60.977 57.143 0.00 0.00 0.00 3.24
108 109 0.620700 GCCCAGGTAAAGGAGGAGGA 60.621 60.000 0.00 0.00 0.00 3.71
109 110 0.621862 AGCCCAGGTAAAGGAGGAGG 60.622 60.000 0.00 0.00 0.00 4.30
110 111 1.065126 CAAGCCCAGGTAAAGGAGGAG 60.065 57.143 0.00 0.00 0.00 3.69
111 112 0.991920 CAAGCCCAGGTAAAGGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
112 113 0.034089 CCAAGCCCAGGTAAAGGAGG 60.034 60.000 0.00 0.00 0.00 4.30
113 114 0.034089 CCCAAGCCCAGGTAAAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
114 115 0.476808 TCCCAAGCCCAGGTAAAGGA 60.477 55.000 0.00 0.00 0.00 3.36
115 116 0.323451 GTCCCAAGCCCAGGTAAAGG 60.323 60.000 0.00 0.00 0.00 3.11
116 117 0.323451 GGTCCCAAGCCCAGGTAAAG 60.323 60.000 0.00 0.00 0.00 1.85
117 118 1.771646 GGTCCCAAGCCCAGGTAAA 59.228 57.895 0.00 0.00 0.00 2.01
118 119 2.598787 CGGTCCCAAGCCCAGGTAA 61.599 63.158 0.00 0.00 0.00 2.85
119 120 3.006728 CGGTCCCAAGCCCAGGTA 61.007 66.667 0.00 0.00 0.00 3.08
124 125 4.484872 GTAGCCGGTCCCAAGCCC 62.485 72.222 1.90 0.00 0.00 5.19
125 126 4.832608 CGTAGCCGGTCCCAAGCC 62.833 72.222 1.90 0.00 0.00 4.35
126 127 3.600898 AACGTAGCCGGTCCCAAGC 62.601 63.158 1.90 0.00 38.78 4.01
127 128 1.740296 CAACGTAGCCGGTCCCAAG 60.740 63.158 1.90 0.00 38.78 3.61
128 129 2.162338 CTCAACGTAGCCGGTCCCAA 62.162 60.000 1.90 0.00 38.78 4.12
129 130 2.601067 TCAACGTAGCCGGTCCCA 60.601 61.111 1.90 0.00 38.78 4.37
130 131 2.183555 CTCAACGTAGCCGGTCCC 59.816 66.667 1.90 0.00 38.78 4.46
131 132 1.153881 GTCTCAACGTAGCCGGTCC 60.154 63.158 1.90 0.00 38.78 4.46
132 133 0.456312 CTGTCTCAACGTAGCCGGTC 60.456 60.000 1.90 0.00 38.78 4.79
133 134 1.585006 CTGTCTCAACGTAGCCGGT 59.415 57.895 1.90 0.00 38.78 5.28
134 135 1.805945 GCTGTCTCAACGTAGCCGG 60.806 63.158 0.00 0.00 38.78 6.13
135 136 0.458543 ATGCTGTCTCAACGTAGCCG 60.459 55.000 3.45 0.00 40.83 5.52
136 137 2.464865 CTATGCTGTCTCAACGTAGCC 58.535 52.381 3.45 0.00 35.36 3.93
137 138 2.464865 CCTATGCTGTCTCAACGTAGC 58.535 52.381 0.00 0.00 36.72 3.58
138 139 2.464865 GCCTATGCTGTCTCAACGTAG 58.535 52.381 0.00 0.00 33.53 3.51
139 140 1.202256 CGCCTATGCTGTCTCAACGTA 60.202 52.381 0.00 0.00 34.43 3.57
140 141 0.458543 CGCCTATGCTGTCTCAACGT 60.459 55.000 0.00 0.00 34.43 3.99
141 142 1.148157 CCGCCTATGCTGTCTCAACG 61.148 60.000 0.00 0.00 34.43 4.10
142 143 0.175760 TCCGCCTATGCTGTCTCAAC 59.824 55.000 0.00 0.00 34.43 3.18
143 144 0.461548 CTCCGCCTATGCTGTCTCAA 59.538 55.000 0.00 0.00 34.43 3.02
144 145 0.684479 ACTCCGCCTATGCTGTCTCA 60.684 55.000 0.00 0.00 34.43 3.27
145 146 0.461961 AACTCCGCCTATGCTGTCTC 59.538 55.000 0.00 0.00 34.43 3.36
146 147 1.776662 TAACTCCGCCTATGCTGTCT 58.223 50.000 0.00 0.00 34.43 3.41
147 148 2.596904 TTAACTCCGCCTATGCTGTC 57.403 50.000 0.00 0.00 34.43 3.51
148 149 2.236395 ACTTTAACTCCGCCTATGCTGT 59.764 45.455 0.00 0.00 34.43 4.40
149 150 2.906354 ACTTTAACTCCGCCTATGCTG 58.094 47.619 0.00 0.00 34.43 4.41
150 151 4.748277 TTACTTTAACTCCGCCTATGCT 57.252 40.909 0.00 0.00 34.43 3.79
151 152 4.874396 ACTTTACTTTAACTCCGCCTATGC 59.126 41.667 0.00 0.00 0.00 3.14
152 153 6.338937 AGACTTTACTTTAACTCCGCCTATG 58.661 40.000 0.00 0.00 0.00 2.23
153 154 6.541934 AGACTTTACTTTAACTCCGCCTAT 57.458 37.500 0.00 0.00 0.00 2.57
154 155 5.990120 AGACTTTACTTTAACTCCGCCTA 57.010 39.130 0.00 0.00 0.00 3.93
155 156 4.886496 AGACTTTACTTTAACTCCGCCT 57.114 40.909 0.00 0.00 0.00 5.52
156 157 5.936686 AAAGACTTTACTTTAACTCCGCC 57.063 39.130 0.00 0.00 38.16 6.13
245 246 8.856153 TGTCTATGTACATTTGTATGTGGTTT 57.144 30.769 14.77 0.00 44.56 3.27
278 279 5.721232 AGCACACTAAGTAAATCTACGCTT 58.279 37.500 0.00 0.00 32.87 4.68
281 282 5.798934 ACGAAGCACACTAAGTAAATCTACG 59.201 40.000 0.00 0.00 32.87 3.51
282 283 8.744011 CATACGAAGCACACTAAGTAAATCTAC 58.256 37.037 0.00 0.00 0.00 2.59
289 290 6.748333 ACTACATACGAAGCACACTAAGTA 57.252 37.500 0.00 0.00 0.00 2.24
293 294 5.632244 TGAACTACATACGAAGCACACTA 57.368 39.130 0.00 0.00 0.00 2.74
295 296 7.464830 AATATGAACTACATACGAAGCACAC 57.535 36.000 0.00 0.00 43.12 3.82
335 336 5.045012 ACTTTTTACTCCCTCCGTTTCTT 57.955 39.130 0.00 0.00 0.00 2.52
376 377 7.491372 GCTTTTAATCCTGCCTAAAATAACCAC 59.509 37.037 0.00 0.00 0.00 4.16
382 383 7.201947 GGAGATGCTTTTAATCCTGCCTAAAAT 60.202 37.037 0.00 0.00 0.00 1.82
399 401 2.042831 GCGCCTGTTGGAGATGCTT 61.043 57.895 0.00 0.00 34.95 3.91
401 403 3.512516 GGCGCCTGTTGGAGATGC 61.513 66.667 22.15 0.00 34.95 3.91
402 404 2.825836 GGGCGCCTGTTGGAGATG 60.826 66.667 28.56 0.00 34.95 2.90
403 405 2.424842 TTTGGGCGCCTGTTGGAGAT 62.425 55.000 28.56 0.00 34.95 2.75
404 406 2.632602 TTTTGGGCGCCTGTTGGAGA 62.633 55.000 28.56 1.45 34.95 3.71
405 407 1.743321 TTTTTGGGCGCCTGTTGGAG 61.743 55.000 28.56 0.00 36.16 3.86
407 409 1.300853 CTTTTTGGGCGCCTGTTGG 60.301 57.895 28.56 8.87 0.00 3.77
408 410 0.103937 TTCTTTTTGGGCGCCTGTTG 59.896 50.000 28.56 12.02 0.00 3.33
409 411 0.104120 GTTCTTTTTGGGCGCCTGTT 59.896 50.000 28.56 0.00 0.00 3.16
410 412 0.755327 AGTTCTTTTTGGGCGCCTGT 60.755 50.000 28.56 0.00 0.00 4.00
411 413 0.039165 GAGTTCTTTTTGGGCGCCTG 60.039 55.000 28.56 9.84 0.00 4.85
412 414 1.179174 GGAGTTCTTTTTGGGCGCCT 61.179 55.000 28.56 0.61 0.00 5.52
413 415 1.289066 GGAGTTCTTTTTGGGCGCC 59.711 57.895 21.18 21.18 0.00 6.53
414 416 1.081442 CGGAGTTCTTTTTGGGCGC 60.081 57.895 0.00 0.00 0.00 6.53
415 417 1.081442 GCGGAGTTCTTTTTGGGCG 60.081 57.895 0.00 0.00 0.00 6.13
416 418 1.081442 CGCGGAGTTCTTTTTGGGC 60.081 57.895 0.00 0.00 0.00 5.36
417 419 1.081442 GCGCGGAGTTCTTTTTGGG 60.081 57.895 8.83 0.00 0.00 4.12
418 420 0.660300 GTGCGCGGAGTTCTTTTTGG 60.660 55.000 8.83 0.00 0.00 3.28
419 421 0.307760 AGTGCGCGGAGTTCTTTTTG 59.692 50.000 8.83 0.00 0.00 2.44
420 422 1.873698 TAGTGCGCGGAGTTCTTTTT 58.126 45.000 14.75 0.00 0.00 1.94
421 423 1.873698 TTAGTGCGCGGAGTTCTTTT 58.126 45.000 14.75 0.00 0.00 2.27
422 424 1.873698 TTTAGTGCGCGGAGTTCTTT 58.126 45.000 14.75 0.00 0.00 2.52
423 425 1.873698 TTTTAGTGCGCGGAGTTCTT 58.126 45.000 14.75 0.00 0.00 2.52
424 426 2.094762 ATTTTAGTGCGCGGAGTTCT 57.905 45.000 14.75 3.52 0.00 3.01
425 427 2.894307 AATTTTAGTGCGCGGAGTTC 57.106 45.000 14.75 0.00 0.00 3.01
426 428 3.243267 ACAAAATTTTAGTGCGCGGAGTT 60.243 39.130 14.75 0.81 0.00 3.01
427 429 2.292292 ACAAAATTTTAGTGCGCGGAGT 59.708 40.909 13.87 13.87 0.00 3.85
428 430 2.928694 ACAAAATTTTAGTGCGCGGAG 58.071 42.857 8.83 0.00 0.00 4.63
429 431 3.357166 AACAAAATTTTAGTGCGCGGA 57.643 38.095 8.83 0.00 0.00 5.54
430 432 4.445353 AAAACAAAATTTTAGTGCGCGG 57.555 36.364 8.83 0.00 0.00 6.46
450 452 4.277593 CTGTGCGGCGCCCAAAAA 62.278 61.111 30.82 6.28 0.00 1.94
460 462 3.677284 ATCTGCTGGAGCTGTGCGG 62.677 63.158 0.00 0.00 42.66 5.69
461 463 2.125229 ATCTGCTGGAGCTGTGCG 60.125 61.111 0.00 0.00 42.66 5.34
462 464 2.762234 GCATCTGCTGGAGCTGTGC 61.762 63.158 0.00 13.16 42.66 4.57
463 465 3.499050 GCATCTGCTGGAGCTGTG 58.501 61.111 0.00 2.79 42.66 3.66
473 475 1.290203 TTTAGCGCTACAGCATCTGC 58.710 50.000 18.63 0.00 42.21 4.26
474 476 4.542662 AATTTTAGCGCTACAGCATCTG 57.457 40.909 18.63 0.00 42.21 2.90
475 477 5.567138 AAAATTTTAGCGCTACAGCATCT 57.433 34.783 18.63 0.00 42.21 2.90
495 497 2.119147 TTTCAGCGCGCGCCTAAAAA 62.119 50.000 46.98 35.13 43.17 1.94
496 498 2.119147 TTTTCAGCGCGCGCCTAAAA 62.119 50.000 46.98 41.98 43.17 1.52
497 499 2.119147 TTTTTCAGCGCGCGCCTAAA 62.119 50.000 46.98 39.72 43.17 1.85
498 500 2.608825 TTTTTCAGCGCGCGCCTAA 61.609 52.632 46.98 37.09 43.17 2.69
499 501 3.044898 TTTTTCAGCGCGCGCCTA 61.045 55.556 46.98 34.00 43.17 3.93
500 502 4.683334 GTTTTTCAGCGCGCGCCT 62.683 61.111 46.98 32.27 43.17 5.52
519 521 0.439985 AAATATGCTGCGCGCGATAG 59.560 50.000 37.18 29.48 43.27 2.08
520 522 0.865111 AAAATATGCTGCGCGCGATA 59.135 45.000 37.18 22.34 43.27 2.92
521 523 0.658244 CAAAATATGCTGCGCGCGAT 60.658 50.000 37.18 20.72 43.27 4.58
522 524 1.297524 CAAAATATGCTGCGCGCGA 60.298 52.632 37.18 17.91 43.27 5.87
523 525 2.287965 CCAAAATATGCTGCGCGCG 61.288 57.895 28.44 28.44 43.27 6.86
524 526 1.945662 CCCAAAATATGCTGCGCGC 60.946 57.895 27.26 27.26 39.77 6.86
525 527 0.179140 AACCCAAAATATGCTGCGCG 60.179 50.000 0.00 0.00 0.00 6.86
526 528 1.926510 GAAACCCAAAATATGCTGCGC 59.073 47.619 0.00 0.00 0.00 6.09
527 529 2.184448 CGAAACCCAAAATATGCTGCG 58.816 47.619 0.00 0.00 0.00 5.18
528 530 2.165437 TCCGAAACCCAAAATATGCTGC 59.835 45.455 0.00 0.00 0.00 5.25
529 531 4.654091 ATCCGAAACCCAAAATATGCTG 57.346 40.909 0.00 0.00 0.00 4.41
530 532 4.680440 GCAATCCGAAACCCAAAATATGCT 60.680 41.667 0.00 0.00 0.00 3.79
531 533 3.555547 GCAATCCGAAACCCAAAATATGC 59.444 43.478 0.00 0.00 0.00 3.14
532 534 3.796178 CGCAATCCGAAACCCAAAATATG 59.204 43.478 0.00 0.00 40.02 1.78
533 535 3.736740 GCGCAATCCGAAACCCAAAATAT 60.737 43.478 0.30 0.00 40.02 1.28
534 536 2.416162 GCGCAATCCGAAACCCAAAATA 60.416 45.455 0.30 0.00 40.02 1.40
535 537 1.671556 GCGCAATCCGAAACCCAAAAT 60.672 47.619 0.30 0.00 40.02 1.82
536 538 0.319125 GCGCAATCCGAAACCCAAAA 60.319 50.000 0.30 0.00 40.02 2.44
537 539 1.287503 GCGCAATCCGAAACCCAAA 59.712 52.632 0.30 0.00 40.02 3.28
538 540 2.958576 GCGCAATCCGAAACCCAA 59.041 55.556 0.30 0.00 40.02 4.12
539 541 3.427425 CGCGCAATCCGAAACCCA 61.427 61.111 8.75 0.00 40.02 4.51
540 542 4.829518 GCGCGCAATCCGAAACCC 62.830 66.667 29.10 0.00 40.02 4.11
552 554 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
553 555 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
554 556 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
555 557 1.608093 GGTGCAAATTGTGAAGCGCG 61.608 55.000 0.00 0.00 38.31 6.86
556 558 0.597118 TGGTGCAAATTGTGAAGCGC 60.597 50.000 0.00 0.00 35.85 5.92
557 559 1.722464 CATGGTGCAAATTGTGAAGCG 59.278 47.619 0.00 0.00 35.85 4.68
558 560 2.477375 CACATGGTGCAAATTGTGAAGC 59.523 45.455 15.45 0.00 41.50 3.86
571 573 0.854062 CGCACAAAAAGCACATGGTG 59.146 50.000 0.00 0.00 36.51 4.17
572 574 0.875474 GCGCACAAAAAGCACATGGT 60.875 50.000 0.30 0.00 0.00 3.55
573 575 1.854664 GCGCACAAAAAGCACATGG 59.145 52.632 0.30 0.00 0.00 3.66
574 576 1.483806 CGCGCACAAAAAGCACATG 59.516 52.632 8.75 0.00 0.00 3.21
575 577 2.302230 GCGCGCACAAAAAGCACAT 61.302 52.632 29.10 0.00 0.00 3.21
576 578 2.953824 GCGCGCACAAAAAGCACA 60.954 55.556 29.10 0.00 0.00 4.57
577 579 4.033481 CGCGCGCACAAAAAGCAC 62.033 61.111 32.61 0.00 0.00 4.40
578 580 4.544689 ACGCGCGCACAAAAAGCA 62.545 55.556 32.58 0.00 0.00 3.91
579 581 2.341558 AAAACGCGCGCACAAAAAGC 62.342 50.000 32.58 0.00 0.00 3.51
580 582 0.024364 AAAAACGCGCGCACAAAAAG 59.976 45.000 32.58 15.32 0.00 2.27
581 583 2.070861 AAAAACGCGCGCACAAAAA 58.929 42.105 32.58 0.00 0.00 1.94
582 584 3.768632 AAAAACGCGCGCACAAAA 58.231 44.444 32.58 0.00 0.00 2.44
596 598 1.285578 GCTTTTGCAGACGCCAAAAA 58.714 45.000 0.00 0.00 46.58 1.94
597 599 2.970576 GCTTTTGCAGACGCCAAAA 58.029 47.368 0.00 0.00 46.58 2.44
598 600 4.728058 GCTTTTGCAGACGCCAAA 57.272 50.000 0.00 0.00 46.58 3.28
609 611 3.300009 GTCGAGACCAACATTGCTTTTG 58.700 45.455 0.00 0.00 0.00 2.44
610 612 2.032030 CGTCGAGACCAACATTGCTTTT 60.032 45.455 0.00 0.00 0.00 2.27
611 613 1.531149 CGTCGAGACCAACATTGCTTT 59.469 47.619 0.00 0.00 0.00 3.51
612 614 1.148310 CGTCGAGACCAACATTGCTT 58.852 50.000 0.00 0.00 0.00 3.91
613 615 1.291877 GCGTCGAGACCAACATTGCT 61.292 55.000 0.00 0.00 0.00 3.91
614 616 1.132640 GCGTCGAGACCAACATTGC 59.867 57.895 0.00 0.00 0.00 3.56
615 617 0.163788 GTGCGTCGAGACCAACATTG 59.836 55.000 0.00 0.00 0.00 2.82
616 618 0.033504 AGTGCGTCGAGACCAACATT 59.966 50.000 0.00 0.00 0.00 2.71
617 619 0.885879 TAGTGCGTCGAGACCAACAT 59.114 50.000 0.00 0.00 0.00 2.71
618 620 0.669619 TTAGTGCGTCGAGACCAACA 59.330 50.000 0.00 0.00 0.00 3.33
619 621 1.774639 TTTAGTGCGTCGAGACCAAC 58.225 50.000 0.00 0.00 0.00 3.77
620 622 2.512485 TTTTAGTGCGTCGAGACCAA 57.488 45.000 0.00 0.00 0.00 3.67
621 623 2.512485 TTTTTAGTGCGTCGAGACCA 57.488 45.000 0.00 0.00 0.00 4.02
622 624 2.474032 GCATTTTTAGTGCGTCGAGACC 60.474 50.000 0.00 0.00 32.29 3.85
623 625 2.412089 AGCATTTTTAGTGCGTCGAGAC 59.588 45.455 0.00 0.00 46.86 3.36
624 626 2.683968 AGCATTTTTAGTGCGTCGAGA 58.316 42.857 0.00 0.00 46.86 4.04
625 627 4.577687 TTAGCATTTTTAGTGCGTCGAG 57.422 40.909 0.00 0.00 46.86 4.04
626 628 4.449743 ACTTTAGCATTTTTAGTGCGTCGA 59.550 37.500 0.00 0.00 46.86 4.20
627 629 4.549599 CACTTTAGCATTTTTAGTGCGTCG 59.450 41.667 0.00 0.00 46.86 5.12
628 630 5.564127 GTCACTTTAGCATTTTTAGTGCGTC 59.436 40.000 0.00 0.00 46.86 5.19
629 631 5.449304 GTCACTTTAGCATTTTTAGTGCGT 58.551 37.500 0.00 0.00 46.86 5.24
630 632 4.549599 CGTCACTTTAGCATTTTTAGTGCG 59.450 41.667 0.00 0.00 46.86 5.34
631 633 4.320953 GCGTCACTTTAGCATTTTTAGTGC 59.679 41.667 0.00 0.00 42.81 4.40
632 634 4.549599 CGCGTCACTTTAGCATTTTTAGTG 59.450 41.667 0.00 0.00 38.00 2.74
633 635 4.708601 CGCGTCACTTTAGCATTTTTAGT 58.291 39.130 0.00 0.00 0.00 2.24
634 636 3.538392 GCGCGTCACTTTAGCATTTTTAG 59.462 43.478 8.43 0.00 0.00 1.85
635 637 3.187637 AGCGCGTCACTTTAGCATTTTTA 59.812 39.130 8.43 0.00 0.00 1.52
636 638 2.031157 AGCGCGTCACTTTAGCATTTTT 60.031 40.909 8.43 0.00 0.00 1.94
637 639 1.535462 AGCGCGTCACTTTAGCATTTT 59.465 42.857 8.43 0.00 0.00 1.82
638 640 1.156736 AGCGCGTCACTTTAGCATTT 58.843 45.000 8.43 0.00 0.00 2.32
639 641 2.004583 TAGCGCGTCACTTTAGCATT 57.995 45.000 8.43 0.00 0.00 3.56
640 642 2.225068 ATAGCGCGTCACTTTAGCAT 57.775 45.000 8.43 0.00 0.00 3.79
641 643 2.855660 TATAGCGCGTCACTTTAGCA 57.144 45.000 8.43 0.00 0.00 3.49
642 644 4.710528 AATTATAGCGCGTCACTTTAGC 57.289 40.909 8.43 0.00 0.00 3.09
643 645 9.646336 AATAAAAATTATAGCGCGTCACTTTAG 57.354 29.630 8.43 0.00 0.00 1.85
644 646 9.428363 CAATAAAAATTATAGCGCGTCACTTTA 57.572 29.630 8.43 2.39 0.00 1.85
645 647 7.431084 CCAATAAAAATTATAGCGCGTCACTTT 59.569 33.333 8.43 0.00 0.00 2.66
646 648 6.910433 CCAATAAAAATTATAGCGCGTCACTT 59.090 34.615 8.43 0.00 0.00 3.16
647 649 6.427150 CCAATAAAAATTATAGCGCGTCACT 58.573 36.000 8.43 0.00 0.00 3.41
648 650 5.623673 CCCAATAAAAATTATAGCGCGTCAC 59.376 40.000 8.43 0.00 0.00 3.67
649 651 5.753744 CCCAATAAAAATTATAGCGCGTCA 58.246 37.500 8.43 0.00 0.00 4.35
650 652 4.615541 GCCCAATAAAAATTATAGCGCGTC 59.384 41.667 8.43 0.00 0.00 5.19
651 653 4.542735 GCCCAATAAAAATTATAGCGCGT 58.457 39.130 8.43 0.00 0.00 6.01
652 654 3.917985 GGCCCAATAAAAATTATAGCGCG 59.082 43.478 0.00 0.00 0.00 6.86
653 655 4.021456 AGGGCCCAATAAAAATTATAGCGC 60.021 41.667 27.56 0.00 0.00 5.92
654 656 5.722021 AGGGCCCAATAAAAATTATAGCG 57.278 39.130 27.56 0.00 0.00 4.26
661 663 9.625747 CACAATAATTTAGGGCCCAATAAAAAT 57.374 29.630 27.56 17.30 0.00 1.82
662 664 7.554476 GCACAATAATTTAGGGCCCAATAAAAA 59.446 33.333 27.56 15.79 0.00 1.94
663 665 7.051000 GCACAATAATTTAGGGCCCAATAAAA 58.949 34.615 27.56 18.34 0.00 1.52
664 666 6.587273 GCACAATAATTTAGGGCCCAATAAA 58.413 36.000 27.56 20.94 0.00 1.40
665 667 5.221342 CGCACAATAATTTAGGGCCCAATAA 60.221 40.000 27.56 15.22 0.00 1.40
666 668 4.279671 CGCACAATAATTTAGGGCCCAATA 59.720 41.667 27.56 5.38 0.00 1.90
667 669 3.069443 CGCACAATAATTTAGGGCCCAAT 59.931 43.478 27.56 13.64 0.00 3.16
668 670 2.428890 CGCACAATAATTTAGGGCCCAA 59.571 45.455 27.56 11.47 0.00 4.12
669 671 2.028130 CGCACAATAATTTAGGGCCCA 58.972 47.619 27.56 7.27 0.00 5.36
670 672 1.339929 CCGCACAATAATTTAGGGCCC 59.660 52.381 16.46 16.46 0.00 5.80
671 673 1.269569 GCCGCACAATAATTTAGGGCC 60.270 52.381 0.00 0.00 33.29 5.80
672 674 1.269569 GGCCGCACAATAATTTAGGGC 60.270 52.381 0.00 0.00 38.56 5.19
673 675 1.001815 CGGCCGCACAATAATTTAGGG 60.002 52.381 14.67 0.00 0.00 3.53
674 676 1.673920 ACGGCCGCACAATAATTTAGG 59.326 47.619 28.58 0.00 0.00 2.69
675 677 3.359654 GAACGGCCGCACAATAATTTAG 58.640 45.455 28.58 0.00 0.00 1.85
676 678 2.223066 CGAACGGCCGCACAATAATTTA 60.223 45.455 28.58 0.00 0.00 1.40
677 679 1.466697 CGAACGGCCGCACAATAATTT 60.467 47.619 28.58 8.56 0.00 1.82
678 680 0.098025 CGAACGGCCGCACAATAATT 59.902 50.000 28.58 9.44 0.00 1.40
679 681 0.741574 TCGAACGGCCGCACAATAAT 60.742 50.000 28.58 0.00 0.00 1.28
680 682 1.355796 CTCGAACGGCCGCACAATAA 61.356 55.000 28.58 3.30 0.00 1.40
681 683 1.807981 CTCGAACGGCCGCACAATA 60.808 57.895 28.58 5.08 0.00 1.90
682 684 2.852495 ATCTCGAACGGCCGCACAAT 62.852 55.000 28.58 8.87 0.00 2.71
683 685 3.583276 ATCTCGAACGGCCGCACAA 62.583 57.895 28.58 7.99 0.00 3.33
684 686 4.063967 ATCTCGAACGGCCGCACA 62.064 61.111 28.58 5.68 0.00 4.57
685 687 3.554692 CATCTCGAACGGCCGCAC 61.555 66.667 28.58 18.64 0.00 5.34
688 690 2.956964 GAGCATCTCGAACGGCCG 60.957 66.667 26.86 26.86 0.00 6.13
699 701 7.183580 GATGTTATCCAGTGTTTAGAGCATC 57.816 40.000 0.00 0.00 0.00 3.91
715 717 4.357142 TGACGCGAACTTAGGATGTTATC 58.643 43.478 15.93 0.00 0.00 1.75
716 718 4.380841 TGACGCGAACTTAGGATGTTAT 57.619 40.909 15.93 0.00 0.00 1.89
717 719 3.853831 TGACGCGAACTTAGGATGTTA 57.146 42.857 15.93 0.00 0.00 2.41
720 722 2.876091 TCTTGACGCGAACTTAGGATG 58.124 47.619 15.93 0.00 0.00 3.51
894 896 3.053693 TGGAGGAGAGAGAGAAAGAGAGG 60.054 52.174 0.00 0.00 0.00 3.69
1086 1092 2.603473 CCGAGGAGGTGGTGGTGA 60.603 66.667 0.00 0.00 34.51 4.02
1235 1241 2.032860 CTACAGCCCTCCCCGATGTG 62.033 65.000 0.00 0.00 0.00 3.21
1261 1267 1.971695 GAAACAGGGGACAAGCCGG 60.972 63.158 0.00 0.00 37.63 6.13
1262 1268 1.971695 GGAAACAGGGGACAAGCCG 60.972 63.158 0.00 0.00 37.63 5.52
1281 1296 2.348666 CCGAATCCACTAAGACAAAGCG 59.651 50.000 0.00 0.00 0.00 4.68
1297 1313 2.187946 CCAGAAGCGCCTCCGAAT 59.812 61.111 2.29 0.00 36.29 3.34
1313 1329 1.449601 CCATACACCACCGCAGACC 60.450 63.158 0.00 0.00 0.00 3.85
1322 1338 2.420827 CCGCTCCATTTACCATACACCA 60.421 50.000 0.00 0.00 0.00 4.17
1418 1434 0.315886 TCAGTTTCTACTTCGGCGCA 59.684 50.000 10.83 0.00 30.26 6.09
1467 1486 5.269459 ACGAAACAGAATGAACTTGATCG 57.731 39.130 0.00 0.00 39.69 3.69
1658 1677 6.655078 AACAAATGAGAAATTGTAGCACCT 57.345 33.333 0.00 0.00 38.75 4.00
1746 1765 5.195001 ACTAGCACTCTAGAGCAATAAGC 57.805 43.478 19.97 13.29 43.95 3.09
1754 1773 9.081997 CAAAGTTTGAATACTAGCACTCTAGAG 57.918 37.037 18.49 18.49 43.95 2.43
1758 1777 7.880195 ACATCAAAGTTTGAATACTAGCACTCT 59.120 33.333 21.57 0.00 43.95 3.24
1844 1863 4.097741 TCAACCAAAATGTCCAGAACACTG 59.902 41.667 0.00 0.00 41.75 3.66
1945 1964 5.253330 ACTAACCCACGATGTCAAATCATT 58.747 37.500 0.00 0.00 0.00 2.57
2394 2417 5.515626 GCAATTCAAAGCATGCAAACAAAAA 59.484 32.000 21.98 4.96 38.63 1.94
2395 2418 5.035443 GCAATTCAAAGCATGCAAACAAAA 58.965 33.333 21.98 6.59 38.63 2.44
2396 2419 4.095932 TGCAATTCAAAGCATGCAAACAAA 59.904 33.333 21.98 7.69 45.04 2.83
2459 2482 6.896021 TCGGAGGGAGTATTAAATCTACAG 57.104 41.667 0.00 0.00 0.00 2.74
2485 2510 7.317390 AGTTCAAAACGGTGACACTTATTTTT 58.683 30.769 5.39 3.87 36.23 1.94
2500 2525 8.126700 AGGTTAGTTCAACATTAGTTCAAAACG 58.873 33.333 0.00 0.00 39.04 3.60
2557 2582 1.276622 GAAACTAGGCACTCCCTCCA 58.723 55.000 0.00 0.00 44.96 3.86
2567 2592 4.006319 AGAGCATCAAAGTGAAACTAGGC 58.994 43.478 0.00 0.00 43.96 3.93
2629 2654 6.747659 AAACAGCGTAAAAATTGCTTGTAG 57.252 33.333 0.00 0.00 36.69 2.74
2677 2702 8.939929 ACATGAATATTGCCGACATATCTAAAG 58.060 33.333 0.00 0.00 0.00 1.85
2856 2881 6.189859 TGCCATCCTCTAAACTTGAATCATT 58.810 36.000 0.00 0.00 0.00 2.57
2969 2994 4.391155 ACATTTGCTTCCCGTTAAGTGTA 58.609 39.130 0.00 0.00 0.00 2.90
3166 3191 9.645059 CTAGAATAGTGATTCACAAGAAACAGA 57.355 33.333 18.57 0.00 43.51 3.41
3461 3507 1.666209 GGCAACACAAGCACCACTGT 61.666 55.000 0.00 0.00 0.00 3.55
4203 4262 9.379791 GGTATGCTTTACTAATCAAACTACAGT 57.620 33.333 0.00 0.00 0.00 3.55
4207 4266 8.545472 AGTGGGTATGCTTTACTAATCAAACTA 58.455 33.333 0.00 0.00 0.00 2.24
4247 4322 9.331282 ACCAGCTAATTACTGCTAAATTTAGAG 57.669 33.333 26.00 20.50 37.81 2.43
4505 4586 5.633830 TTTCAGGAGCATCTTCATTTGAC 57.366 39.130 0.00 0.00 33.73 3.18
4660 4741 4.466567 TGCAAAGTGATTCGTGTAACAG 57.533 40.909 0.00 0.00 35.74 3.16
4711 4792 6.293698 TGGGACAGATGTGATAATTCATCAG 58.706 40.000 0.00 2.77 44.42 2.90
4756 4837 8.598916 TGAGTAACCTGGTATTAAGAACATCAA 58.401 33.333 0.00 0.00 0.00 2.57
4995 5077 0.806492 CTAGCGAAGAAAGGGCGGTC 60.806 60.000 0.00 0.00 37.02 4.79
5043 5136 5.844004 ACAAGAGAAAAGACAGACGTACAT 58.156 37.500 0.00 0.00 0.00 2.29
5046 5139 5.977725 CAGAACAAGAGAAAAGACAGACGTA 59.022 40.000 0.00 0.00 0.00 3.57
5052 5145 4.333649 CACTGCAGAACAAGAGAAAAGACA 59.666 41.667 23.35 0.00 0.00 3.41
5068 5161 2.674380 GCCCCAGGAACACTGCAG 60.674 66.667 13.48 13.48 46.14 4.41
5158 5251 2.034305 GGTGATACGCTACAAGATCGGT 59.966 50.000 0.00 0.00 0.00 4.69
5166 5259 1.381522 TAGCACGGTGATACGCTACA 58.618 50.000 13.29 0.00 35.93 2.74
5178 5271 1.566563 GCTCATCGCAATAGCACGG 59.433 57.895 0.00 0.00 42.27 4.94
5311 5404 1.895707 GTTGCTGCTGCTGTGAGGT 60.896 57.895 17.00 0.00 40.48 3.85
5510 5634 6.598753 AATTCGATATTAACCGGTCAACTG 57.401 37.500 8.04 0.00 0.00 3.16
5553 5677 4.621769 ACAGGAGGGTGGCCTATATATAC 58.378 47.826 3.32 0.00 33.51 1.47
5560 5684 2.241176 CAATAAACAGGAGGGTGGCCTA 59.759 50.000 3.32 0.00 33.51 3.93
5561 5685 1.005924 CAATAAACAGGAGGGTGGCCT 59.994 52.381 3.32 0.00 35.75 5.19
5562 5686 1.005450 TCAATAAACAGGAGGGTGGCC 59.995 52.381 0.00 0.00 0.00 5.36
5564 5688 6.039717 CACATTATCAATAAACAGGAGGGTGG 59.960 42.308 0.00 0.00 0.00 4.61
5566 5690 6.969043 TCACATTATCAATAAACAGGAGGGT 58.031 36.000 0.00 0.00 0.00 4.34
5570 5694 8.992073 CATCGATCACATTATCAATAAACAGGA 58.008 33.333 0.00 0.00 0.00 3.86
5571 5695 8.992073 TCATCGATCACATTATCAATAAACAGG 58.008 33.333 0.00 0.00 0.00 4.00
5607 5732 6.556495 TGCCTCATCATAGAGATAAACTCCTT 59.444 38.462 0.00 0.00 45.96 3.36
5653 5778 9.295825 TCTTACCTAATGATTTTTCTTTCAGCA 57.704 29.630 0.00 0.00 0.00 4.41
5700 5826 4.323562 CCGACATTTTCCTTCCCTTCTAGT 60.324 45.833 0.00 0.00 0.00 2.57
5734 5860 0.393673 CCACCCGTTGGCATATGTCA 60.394 55.000 5.74 5.74 39.07 3.58
5818 5944 1.002888 TGGGTAAAATTCACCGGCGTA 59.997 47.619 6.01 0.00 36.89 4.42
5831 5957 0.328258 GAGCCCTGAAGCTGGGTAAA 59.672 55.000 9.27 0.00 45.15 2.01
5852 5978 3.517901 CAGTAGGGGTGTTATCTCCACAA 59.482 47.826 0.00 0.00 33.49 3.33
5853 5979 3.104512 CAGTAGGGGTGTTATCTCCACA 58.895 50.000 0.00 0.00 33.49 4.17
5942 6068 1.552792 CCCTTCTTCTTCTTCTCGCCT 59.447 52.381 0.00 0.00 0.00 5.52
5986 6112 5.163447 TGAGCTAGTTTTAGACACCGCATAT 60.163 40.000 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.