Multiple sequence alignment - TraesCS2A01G167900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G167900 chr2A 100.000 1744 0 0 776 2519 121081245 121079502 0.000000e+00 3221
1 TraesCS2A01G167900 chr2A 100.000 375 0 0 1 375 121082020 121081646 0.000000e+00 693
2 TraesCS2A01G167900 chr2D 94.467 976 47 2 1545 2519 78342230 78341261 0.000000e+00 1496
3 TraesCS2A01G167900 chr2D 92.292 973 68 3 1554 2519 325744645 325743673 0.000000e+00 1375
4 TraesCS2A01G167900 chr1D 93.483 982 59 4 1538 2519 49631106 49632082 0.000000e+00 1454
5 TraesCS2A01G167900 chr1D 92.300 974 68 4 1544 2513 234861758 234862728 0.000000e+00 1376
6 TraesCS2A01G167900 chr7D 93.142 977 57 5 1544 2519 60233425 60232458 0.000000e+00 1424
7 TraesCS2A01G167900 chr5A 92.482 971 67 5 1554 2519 92448314 92449283 0.000000e+00 1384
8 TraesCS2A01G167900 chr6D 92.387 972 67 6 1554 2519 55668798 55667828 0.000000e+00 1378
9 TraesCS2A01G167900 chr6D 93.768 353 22 0 2 354 405581019 405581371 4.770000e-147 531
10 TraesCS2A01G167900 chr3D 92.205 975 69 4 1545 2519 223115555 223114588 0.000000e+00 1373
11 TraesCS2A01G167900 chr1A 91.135 1004 78 7 1522 2519 76806960 76805962 0.000000e+00 1351
12 TraesCS2A01G167900 chr2B 89.202 639 50 7 925 1545 171011003 171010366 0.000000e+00 780
13 TraesCS2A01G167900 chr5D 95.763 354 15 0 1 354 284717467 284717820 2.810000e-159 571
14 TraesCS2A01G167900 chr4B 92.373 354 27 0 1 354 109438749 109439102 2.890000e-139 505
15 TraesCS2A01G167900 chr3B 86.040 351 43 1 2 352 542208739 542209083 3.060000e-99 372


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G167900 chr2A 121079502 121082020 2518 True 1957 3221 100.000 1 2519 2 chr2A.!!$R1 2518
1 TraesCS2A01G167900 chr2D 78341261 78342230 969 True 1496 1496 94.467 1545 2519 1 chr2D.!!$R1 974
2 TraesCS2A01G167900 chr2D 325743673 325744645 972 True 1375 1375 92.292 1554 2519 1 chr2D.!!$R2 965
3 TraesCS2A01G167900 chr1D 49631106 49632082 976 False 1454 1454 93.483 1538 2519 1 chr1D.!!$F1 981
4 TraesCS2A01G167900 chr1D 234861758 234862728 970 False 1376 1376 92.300 1544 2513 1 chr1D.!!$F2 969
5 TraesCS2A01G167900 chr7D 60232458 60233425 967 True 1424 1424 93.142 1544 2519 1 chr7D.!!$R1 975
6 TraesCS2A01G167900 chr5A 92448314 92449283 969 False 1384 1384 92.482 1554 2519 1 chr5A.!!$F1 965
7 TraesCS2A01G167900 chr6D 55667828 55668798 970 True 1378 1378 92.387 1554 2519 1 chr6D.!!$R1 965
8 TraesCS2A01G167900 chr3D 223114588 223115555 967 True 1373 1373 92.205 1545 2519 1 chr3D.!!$R1 974
9 TraesCS2A01G167900 chr1A 76805962 76806960 998 True 1351 1351 91.135 1522 2519 1 chr1A.!!$R1 997
10 TraesCS2A01G167900 chr2B 171010366 171011003 637 True 780 780 89.202 925 1545 1 chr2B.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.250209 CCGGAGATGATGGGCTGAAG 60.25 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1704 0.250553 GTTTGACCCGGATGTGTGGA 60.251 55.0 0.73 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.739046 ATCTCGAAAGCACTTGAAACAG 57.261 40.909 0.00 0.00 0.00 3.16
22 23 3.792401 TCTCGAAAGCACTTGAAACAGA 58.208 40.909 0.00 0.00 0.00 3.41
23 24 3.804325 TCTCGAAAGCACTTGAAACAGAG 59.196 43.478 0.00 0.00 0.00 3.35
24 25 2.872245 TCGAAAGCACTTGAAACAGAGG 59.128 45.455 0.00 0.00 0.00 3.69
25 26 2.603173 CGAAAGCACTTGAAACAGAGGC 60.603 50.000 0.00 0.00 0.00 4.70
26 27 1.322442 AAGCACTTGAAACAGAGGCC 58.678 50.000 0.00 0.00 0.00 5.19
27 28 0.886490 AGCACTTGAAACAGAGGCCG 60.886 55.000 0.00 0.00 0.00 6.13
28 29 0.884704 GCACTTGAAACAGAGGCCGA 60.885 55.000 0.00 0.00 0.00 5.54
29 30 1.593196 CACTTGAAACAGAGGCCGAA 58.407 50.000 0.00 0.00 0.00 4.30
30 31 1.264288 CACTTGAAACAGAGGCCGAAC 59.736 52.381 0.00 0.00 0.00 3.95
31 32 1.134220 ACTTGAAACAGAGGCCGAACA 60.134 47.619 0.00 0.00 0.00 3.18
32 33 1.532868 CTTGAAACAGAGGCCGAACAG 59.467 52.381 0.00 0.00 0.00 3.16
33 34 0.250295 TGAAACAGAGGCCGAACAGG 60.250 55.000 0.00 0.00 44.97 4.00
34 35 0.250338 GAAACAGAGGCCGAACAGGT 60.250 55.000 0.00 0.00 43.70 4.00
41 42 4.373116 GCCGAACAGGTCAGCCGA 62.373 66.667 0.00 0.00 43.70 5.54
42 43 2.125912 CCGAACAGGTCAGCCGAG 60.126 66.667 0.00 0.00 40.50 4.63
43 44 2.636412 CCGAACAGGTCAGCCGAGA 61.636 63.158 0.00 0.00 40.50 4.04
44 45 1.513158 CGAACAGGTCAGCCGAGAT 59.487 57.895 0.00 0.00 40.50 2.75
45 46 0.526524 CGAACAGGTCAGCCGAGATC 60.527 60.000 0.00 0.00 40.50 2.75
46 47 0.820871 GAACAGGTCAGCCGAGATCT 59.179 55.000 0.00 0.00 40.50 2.75
47 48 0.820871 AACAGGTCAGCCGAGATCTC 59.179 55.000 13.05 13.05 40.50 2.75
48 49 1.040339 ACAGGTCAGCCGAGATCTCC 61.040 60.000 17.13 4.02 40.50 3.71
49 50 1.456705 AGGTCAGCCGAGATCTCCC 60.457 63.158 17.13 10.82 40.50 4.30
50 51 1.456705 GGTCAGCCGAGATCTCCCT 60.457 63.158 17.13 10.55 0.00 4.20
51 52 1.460273 GGTCAGCCGAGATCTCCCTC 61.460 65.000 17.13 6.31 0.00 4.30
52 53 1.152652 TCAGCCGAGATCTCCCTCC 60.153 63.158 17.13 3.15 0.00 4.30
53 54 1.152567 CAGCCGAGATCTCCCTCCT 60.153 63.158 17.13 5.36 0.00 3.69
54 55 1.152830 AGCCGAGATCTCCCTCCTC 59.847 63.158 17.13 0.54 0.00 3.71
55 56 1.152830 GCCGAGATCTCCCTCCTCT 59.847 63.158 17.13 0.00 0.00 3.69
56 57 0.893727 GCCGAGATCTCCCTCCTCTC 60.894 65.000 17.13 0.00 33.59 3.20
57 58 0.251165 CCGAGATCTCCCTCCTCTCC 60.251 65.000 17.13 0.00 33.40 3.71
58 59 0.605319 CGAGATCTCCCTCCTCTCCG 60.605 65.000 17.13 0.00 33.40 4.63
59 60 0.251165 GAGATCTCCCTCCTCTCCGG 60.251 65.000 12.00 0.00 31.25 5.14
60 61 1.906333 GATCTCCCTCCTCTCCGGC 60.906 68.421 0.00 0.00 0.00 6.13
61 62 3.801068 ATCTCCCTCCTCTCCGGCG 62.801 68.421 0.00 0.00 0.00 6.46
62 63 4.507916 CTCCCTCCTCTCCGGCGA 62.508 72.222 9.30 0.00 0.00 5.54
63 64 4.816984 TCCCTCCTCTCCGGCGAC 62.817 72.222 9.30 0.00 0.00 5.19
88 89 4.593864 GGGAGCGCGACCTGGATC 62.594 72.222 12.10 3.79 0.00 3.36
89 90 4.593864 GGAGCGCGACCTGGATCC 62.594 72.222 12.10 4.20 0.00 3.36
90 91 3.838271 GAGCGCGACCTGGATCCA 61.838 66.667 15.27 15.27 0.00 3.41
91 92 4.148825 AGCGCGACCTGGATCCAC 62.149 66.667 11.44 0.00 0.00 4.02
93 94 4.530857 CGCGACCTGGATCCACCC 62.531 72.222 11.44 1.66 38.00 4.61
94 95 4.530857 GCGACCTGGATCCACCCG 62.531 72.222 11.44 14.97 38.00 5.28
95 96 4.530857 CGACCTGGATCCACCCGC 62.531 72.222 11.44 0.00 38.00 6.13
96 97 4.176752 GACCTGGATCCACCCGCC 62.177 72.222 11.44 0.00 38.00 6.13
111 112 2.280797 GCCGCCGCCATCTTCATA 60.281 61.111 0.00 0.00 0.00 2.15
112 113 1.672356 GCCGCCGCCATCTTCATAT 60.672 57.895 0.00 0.00 0.00 1.78
113 114 1.237285 GCCGCCGCCATCTTCATATT 61.237 55.000 0.00 0.00 0.00 1.28
114 115 0.798776 CCGCCGCCATCTTCATATTC 59.201 55.000 0.00 0.00 0.00 1.75
115 116 1.609061 CCGCCGCCATCTTCATATTCT 60.609 52.381 0.00 0.00 0.00 2.40
116 117 1.462283 CGCCGCCATCTTCATATTCTG 59.538 52.381 0.00 0.00 0.00 3.02
117 118 1.808945 GCCGCCATCTTCATATTCTGG 59.191 52.381 0.00 0.00 0.00 3.86
118 119 2.550855 GCCGCCATCTTCATATTCTGGA 60.551 50.000 0.00 0.00 0.00 3.86
119 120 3.743521 CCGCCATCTTCATATTCTGGAA 58.256 45.455 0.00 0.00 0.00 3.53
120 121 4.136796 CCGCCATCTTCATATTCTGGAAA 58.863 43.478 0.00 0.00 0.00 3.13
121 122 4.214971 CCGCCATCTTCATATTCTGGAAAG 59.785 45.833 0.00 0.00 0.00 2.62
122 123 5.059161 CGCCATCTTCATATTCTGGAAAGA 58.941 41.667 0.00 0.00 0.00 2.52
123 124 5.704515 CGCCATCTTCATATTCTGGAAAGAT 59.295 40.000 0.00 0.00 0.00 2.40
124 125 6.206243 CGCCATCTTCATATTCTGGAAAGATT 59.794 38.462 0.00 0.00 0.00 2.40
125 126 7.255381 CGCCATCTTCATATTCTGGAAAGATTT 60.255 37.037 0.00 0.00 0.00 2.17
126 127 8.081025 GCCATCTTCATATTCTGGAAAGATTTC 58.919 37.037 0.00 0.00 36.46 2.17
136 137 2.551355 GAAAGATTTCCTCTTGCGCC 57.449 50.000 4.18 0.00 43.60 6.53
137 138 1.812571 GAAAGATTTCCTCTTGCGCCA 59.187 47.619 4.18 0.00 43.60 5.69
138 139 2.134789 AAGATTTCCTCTTGCGCCAT 57.865 45.000 4.18 0.00 42.76 4.40
139 140 3.281727 AAGATTTCCTCTTGCGCCATA 57.718 42.857 4.18 0.00 42.76 2.74
140 141 2.843701 AGATTTCCTCTTGCGCCATAG 58.156 47.619 4.18 0.00 0.00 2.23
141 142 1.265365 GATTTCCTCTTGCGCCATAGC 59.735 52.381 4.18 0.00 37.71 2.97
185 186 4.225497 CCAAGGAACGGCAGATCC 57.775 61.111 4.96 4.96 39.38 3.36
186 187 1.452108 CCAAGGAACGGCAGATCCC 60.452 63.158 9.51 0.00 39.88 3.85
203 204 4.473520 CGCAGCCGGTCCAGGATT 62.474 66.667 1.90 0.00 0.00 3.01
204 205 2.044946 GCAGCCGGTCCAGGATTT 60.045 61.111 1.90 0.00 0.00 2.17
205 206 2.409870 GCAGCCGGTCCAGGATTTG 61.410 63.158 1.90 1.21 0.00 2.32
206 207 2.044946 AGCCGGTCCAGGATTTGC 60.045 61.111 1.90 0.00 0.00 3.68
207 208 2.361104 GCCGGTCCAGGATTTGCA 60.361 61.111 1.90 0.00 0.00 4.08
208 209 2.700773 GCCGGTCCAGGATTTGCAC 61.701 63.158 1.90 0.00 0.00 4.57
209 210 2.046285 CCGGTCCAGGATTTGCACC 61.046 63.158 0.00 0.00 0.00 5.01
210 211 1.303236 CGGTCCAGGATTTGCACCA 60.303 57.895 0.00 0.00 0.00 4.17
211 212 1.308069 CGGTCCAGGATTTGCACCAG 61.308 60.000 0.00 0.00 0.00 4.00
212 213 1.598701 GGTCCAGGATTTGCACCAGC 61.599 60.000 0.00 0.00 42.57 4.85
213 214 1.304381 TCCAGGATTTGCACCAGCC 60.304 57.895 0.00 0.00 41.13 4.85
214 215 2.703798 CCAGGATTTGCACCAGCCG 61.704 63.158 0.00 0.00 41.13 5.52
215 216 2.361610 AGGATTTGCACCAGCCGG 60.362 61.111 0.00 0.00 41.13 6.13
216 217 4.133796 GGATTTGCACCAGCCGGC 62.134 66.667 21.89 21.89 41.13 6.13
217 218 4.481112 GATTTGCACCAGCCGGCG 62.481 66.667 23.20 16.10 41.13 6.46
233 234 3.699894 CGCACCTCCAGCTCCAGT 61.700 66.667 0.00 0.00 0.00 4.00
234 235 2.267324 GCACCTCCAGCTCCAGTC 59.733 66.667 0.00 0.00 0.00 3.51
235 236 2.575993 CACCTCCAGCTCCAGTCG 59.424 66.667 0.00 0.00 0.00 4.18
236 237 1.979155 CACCTCCAGCTCCAGTCGA 60.979 63.158 0.00 0.00 0.00 4.20
237 238 1.228894 ACCTCCAGCTCCAGTCGAA 60.229 57.895 0.00 0.00 0.00 3.71
238 239 1.216710 CCTCCAGCTCCAGTCGAAC 59.783 63.158 0.00 0.00 0.00 3.95
239 240 1.216710 CTCCAGCTCCAGTCGAACC 59.783 63.158 0.00 0.00 0.00 3.62
240 241 2.125912 CCAGCTCCAGTCGAACCG 60.126 66.667 0.00 0.00 0.00 4.44
241 242 2.811317 CAGCTCCAGTCGAACCGC 60.811 66.667 0.00 0.00 0.00 5.68
242 243 4.070552 AGCTCCAGTCGAACCGCC 62.071 66.667 0.00 0.00 0.00 6.13
244 245 3.382832 CTCCAGTCGAACCGCCCT 61.383 66.667 0.00 0.00 0.00 5.19
245 246 3.358076 CTCCAGTCGAACCGCCCTC 62.358 68.421 0.00 0.00 0.00 4.30
246 247 3.691342 CCAGTCGAACCGCCCTCA 61.691 66.667 0.00 0.00 0.00 3.86
247 248 2.125912 CAGTCGAACCGCCCTCAG 60.126 66.667 0.00 0.00 0.00 3.35
248 249 2.282958 AGTCGAACCGCCCTCAGA 60.283 61.111 0.00 0.00 0.00 3.27
249 250 1.682684 AGTCGAACCGCCCTCAGAT 60.683 57.895 0.00 0.00 0.00 2.90
250 251 1.227002 GTCGAACCGCCCTCAGATC 60.227 63.158 0.00 0.00 0.00 2.75
251 252 2.107141 CGAACCGCCCTCAGATCC 59.893 66.667 0.00 0.00 0.00 3.36
252 253 2.506472 GAACCGCCCTCAGATCCC 59.494 66.667 0.00 0.00 0.00 3.85
253 254 3.447025 GAACCGCCCTCAGATCCCG 62.447 68.421 0.00 0.00 0.00 5.14
254 255 3.976490 AACCGCCCTCAGATCCCGA 62.976 63.158 0.00 0.00 0.00 5.14
255 256 3.917760 CCGCCCTCAGATCCCGAC 61.918 72.222 0.00 0.00 0.00 4.79
256 257 4.271816 CGCCCTCAGATCCCGACG 62.272 72.222 0.00 0.00 0.00 5.12
257 258 2.833582 GCCCTCAGATCCCGACGA 60.834 66.667 0.00 0.00 0.00 4.20
258 259 2.851071 GCCCTCAGATCCCGACGAG 61.851 68.421 0.00 0.00 0.00 4.18
259 260 2.725008 CCTCAGATCCCGACGAGC 59.275 66.667 0.00 0.00 0.00 5.03
260 261 2.725008 CTCAGATCCCGACGAGCC 59.275 66.667 0.00 0.00 0.00 4.70
261 262 1.826054 CTCAGATCCCGACGAGCCT 60.826 63.158 0.00 0.00 0.00 4.58
262 263 2.069465 CTCAGATCCCGACGAGCCTG 62.069 65.000 0.00 0.00 0.00 4.85
263 264 2.121538 CAGATCCCGACGAGCCTGA 61.122 63.158 0.00 0.00 30.59 3.86
264 265 2.122167 AGATCCCGACGAGCCTGAC 61.122 63.158 0.00 0.00 0.00 3.51
265 266 2.362503 ATCCCGACGAGCCTGACA 60.363 61.111 0.00 0.00 0.00 3.58
266 267 2.343163 GATCCCGACGAGCCTGACAG 62.343 65.000 0.00 0.00 0.00 3.51
267 268 2.838748 ATCCCGACGAGCCTGACAGA 62.839 60.000 3.32 0.00 0.00 3.41
268 269 2.179517 CCGACGAGCCTGACAGAC 59.820 66.667 3.32 0.00 0.00 3.51
269 270 2.179517 CGACGAGCCTGACAGACC 59.820 66.667 3.32 0.00 0.00 3.85
270 271 2.179517 GACGAGCCTGACAGACCG 59.820 66.667 3.32 6.78 0.00 4.79
271 272 2.282251 ACGAGCCTGACAGACCGA 60.282 61.111 3.32 0.00 0.00 4.69
272 273 2.259875 GACGAGCCTGACAGACCGAG 62.260 65.000 3.32 0.00 0.00 4.63
273 274 2.183046 GAGCCTGACAGACCGAGC 59.817 66.667 3.32 0.00 0.00 5.03
274 275 3.363844 GAGCCTGACAGACCGAGCC 62.364 68.421 3.32 0.00 0.00 4.70
275 276 4.459089 GCCTGACAGACCGAGCCC 62.459 72.222 3.32 0.00 0.00 5.19
276 277 4.135153 CCTGACAGACCGAGCCCG 62.135 72.222 3.32 0.00 0.00 6.13
286 287 2.341543 CGAGCCCGGAGATGATGG 59.658 66.667 0.73 0.00 0.00 3.51
287 288 2.746359 GAGCCCGGAGATGATGGG 59.254 66.667 0.73 0.00 46.22 4.00
290 291 2.429058 CCCGGAGATGATGGGCTG 59.571 66.667 0.73 0.00 35.82 4.85
291 292 2.142761 CCCGGAGATGATGGGCTGA 61.143 63.158 0.73 0.00 35.82 4.26
292 293 1.699054 CCCGGAGATGATGGGCTGAA 61.699 60.000 0.73 0.00 35.82 3.02
293 294 0.250209 CCGGAGATGATGGGCTGAAG 60.250 60.000 0.00 0.00 0.00 3.02
294 295 0.883814 CGGAGATGATGGGCTGAAGC 60.884 60.000 0.00 0.00 41.14 3.86
304 305 3.072476 GCTGAAGCCTGGAGGACA 58.928 61.111 0.00 0.00 37.39 4.02
305 306 1.376553 GCTGAAGCCTGGAGGACAC 60.377 63.158 0.00 0.00 37.39 3.67
306 307 1.298014 CTGAAGCCTGGAGGACACC 59.702 63.158 0.00 0.00 37.39 4.16
307 308 2.266055 GAAGCCTGGAGGACACCG 59.734 66.667 0.00 0.00 37.39 4.94
308 309 2.203788 AAGCCTGGAGGACACCGA 60.204 61.111 0.00 0.00 37.39 4.69
309 310 2.508586 GAAGCCTGGAGGACACCGAC 62.509 65.000 0.00 0.00 37.39 4.79
310 311 4.436998 GCCTGGAGGACACCGACG 62.437 72.222 0.00 0.00 37.39 5.12
311 312 4.436998 CCTGGAGGACACCGACGC 62.437 72.222 0.00 0.00 37.39 5.19
312 313 3.680786 CTGGAGGACACCGACGCA 61.681 66.667 0.00 0.00 0.00 5.24
313 314 3.633094 CTGGAGGACACCGACGCAG 62.633 68.421 0.00 0.00 0.00 5.18
314 315 4.436998 GGAGGACACCGACGCAGG 62.437 72.222 0.00 0.00 37.30 4.85
315 316 4.436998 GAGGACACCGACGCAGGG 62.437 72.222 1.73 0.00 35.02 4.45
362 363 4.821589 GAGCGGAAGGACAGCGGG 62.822 72.222 0.00 0.00 43.97 6.13
793 794 3.982709 GCTAGCGGGGGTAAGTAAG 57.017 57.895 0.00 0.00 0.00 2.34
794 795 1.117994 GCTAGCGGGGGTAAGTAAGT 58.882 55.000 0.00 0.00 0.00 2.24
795 796 1.483827 GCTAGCGGGGGTAAGTAAGTT 59.516 52.381 0.00 0.00 0.00 2.66
796 797 2.482664 GCTAGCGGGGGTAAGTAAGTTC 60.483 54.545 0.00 0.00 0.00 3.01
797 798 1.948391 AGCGGGGGTAAGTAAGTTCT 58.052 50.000 0.00 0.00 0.00 3.01
798 799 1.829849 AGCGGGGGTAAGTAAGTTCTC 59.170 52.381 0.00 0.00 0.00 2.87
799 800 1.829849 GCGGGGGTAAGTAAGTTCTCT 59.170 52.381 0.00 0.00 0.00 3.10
800 801 2.159128 GCGGGGGTAAGTAAGTTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
801 802 2.098770 CGGGGGTAAGTAAGTTCTCTCG 59.901 54.545 0.00 0.00 0.00 4.04
802 803 2.429971 GGGGGTAAGTAAGTTCTCTCGG 59.570 54.545 0.00 0.00 0.00 4.63
803 804 3.359950 GGGGTAAGTAAGTTCTCTCGGA 58.640 50.000 0.00 0.00 0.00 4.55
804 805 3.959449 GGGGTAAGTAAGTTCTCTCGGAT 59.041 47.826 0.00 0.00 0.00 4.18
805 806 4.405036 GGGGTAAGTAAGTTCTCTCGGATT 59.595 45.833 0.00 0.00 0.00 3.01
806 807 5.105023 GGGGTAAGTAAGTTCTCTCGGATTT 60.105 44.000 0.00 0.00 0.00 2.17
807 808 6.404708 GGGTAAGTAAGTTCTCTCGGATTTT 58.595 40.000 0.00 0.00 0.00 1.82
808 809 6.534436 GGGTAAGTAAGTTCTCTCGGATTTTC 59.466 42.308 0.00 0.00 0.00 2.29
809 810 7.321908 GGTAAGTAAGTTCTCTCGGATTTTCT 58.678 38.462 0.00 0.00 0.00 2.52
810 811 7.818446 GGTAAGTAAGTTCTCTCGGATTTTCTT 59.182 37.037 0.00 0.00 0.00 2.52
811 812 7.659652 AAGTAAGTTCTCTCGGATTTTCTTG 57.340 36.000 0.00 0.00 0.00 3.02
812 813 6.994221 AGTAAGTTCTCTCGGATTTTCTTGA 58.006 36.000 0.00 0.00 0.00 3.02
813 814 7.093992 AGTAAGTTCTCTCGGATTTTCTTGAG 58.906 38.462 0.00 0.00 0.00 3.02
814 815 4.249661 AGTTCTCTCGGATTTTCTTGAGC 58.750 43.478 0.00 0.00 0.00 4.26
815 816 4.020662 AGTTCTCTCGGATTTTCTTGAGCT 60.021 41.667 0.00 0.00 0.00 4.09
816 817 3.854666 TCTCTCGGATTTTCTTGAGCTG 58.145 45.455 0.00 0.00 0.00 4.24
817 818 3.511540 TCTCTCGGATTTTCTTGAGCTGA 59.488 43.478 0.00 0.00 0.00 4.26
818 819 3.854666 TCTCGGATTTTCTTGAGCTGAG 58.145 45.455 0.00 0.00 34.17 3.35
819 820 2.935201 CTCGGATTTTCTTGAGCTGAGG 59.065 50.000 0.00 0.00 0.00 3.86
820 821 1.399791 CGGATTTTCTTGAGCTGAGGC 59.600 52.381 0.00 0.00 39.06 4.70
821 822 1.399791 GGATTTTCTTGAGCTGAGGCG 59.600 52.381 0.00 0.00 44.37 5.52
822 823 0.807496 ATTTTCTTGAGCTGAGGCGC 59.193 50.000 0.00 0.00 44.37 6.53
823 824 1.237285 TTTTCTTGAGCTGAGGCGCC 61.237 55.000 21.89 21.89 44.37 6.53
824 825 2.395988 TTTCTTGAGCTGAGGCGCCA 62.396 55.000 31.54 7.98 44.37 5.69
825 826 3.123620 CTTGAGCTGAGGCGCCAC 61.124 66.667 31.54 24.60 44.37 5.01
826 827 4.704833 TTGAGCTGAGGCGCCACC 62.705 66.667 31.54 20.46 44.37 4.61
840 841 2.438254 CACCGCCAGGCTGCATTA 60.438 61.111 10.54 0.00 42.76 1.90
841 842 1.825191 CACCGCCAGGCTGCATTAT 60.825 57.895 10.54 0.00 42.76 1.28
842 843 1.076777 ACCGCCAGGCTGCATTATT 60.077 52.632 10.54 0.00 42.76 1.40
843 844 1.361271 CCGCCAGGCTGCATTATTG 59.639 57.895 10.54 0.00 0.00 1.90
857 858 5.167218 GCATTATTGCTTCTCCAGTTCTC 57.833 43.478 2.33 0.00 45.77 2.87
858 859 4.036144 GCATTATTGCTTCTCCAGTTCTCC 59.964 45.833 2.33 0.00 45.77 3.71
859 860 2.797177 ATTGCTTCTCCAGTTCTCCC 57.203 50.000 0.00 0.00 0.00 4.30
860 861 1.734655 TTGCTTCTCCAGTTCTCCCT 58.265 50.000 0.00 0.00 0.00 4.20
861 862 0.979665 TGCTTCTCCAGTTCTCCCTG 59.020 55.000 0.00 0.00 0.00 4.45
862 863 0.980423 GCTTCTCCAGTTCTCCCTGT 59.020 55.000 0.00 0.00 0.00 4.00
863 864 1.066502 GCTTCTCCAGTTCTCCCTGTC 60.067 57.143 0.00 0.00 0.00 3.51
864 865 1.552792 CTTCTCCAGTTCTCCCTGTCC 59.447 57.143 0.00 0.00 0.00 4.02
865 866 0.252284 TCTCCAGTTCTCCCTGTCCC 60.252 60.000 0.00 0.00 0.00 4.46
866 867 1.229529 TCCAGTTCTCCCTGTCCCC 60.230 63.158 0.00 0.00 0.00 4.81
867 868 2.301738 CCAGTTCTCCCTGTCCCCC 61.302 68.421 0.00 0.00 0.00 5.40
868 869 2.284699 AGTTCTCCCTGTCCCCCG 60.285 66.667 0.00 0.00 0.00 5.73
869 870 4.097361 GTTCTCCCTGTCCCCCGC 62.097 72.222 0.00 0.00 0.00 6.13
883 884 4.659172 CCGCCAGCCAACCTTCCA 62.659 66.667 0.00 0.00 0.00 3.53
884 885 2.361610 CGCCAGCCAACCTTCCAT 60.362 61.111 0.00 0.00 0.00 3.41
885 886 2.703798 CGCCAGCCAACCTTCCATG 61.704 63.158 0.00 0.00 0.00 3.66
886 887 1.607467 GCCAGCCAACCTTCCATGT 60.607 57.895 0.00 0.00 0.00 3.21
887 888 1.880819 GCCAGCCAACCTTCCATGTG 61.881 60.000 0.00 0.00 0.00 3.21
888 889 0.251297 CCAGCCAACCTTCCATGTGA 60.251 55.000 0.00 0.00 0.00 3.58
889 890 1.171308 CAGCCAACCTTCCATGTGAG 58.829 55.000 0.00 0.00 0.00 3.51
890 891 0.610232 AGCCAACCTTCCATGTGAGC 60.610 55.000 0.00 0.00 0.00 4.26
891 892 1.598701 GCCAACCTTCCATGTGAGCC 61.599 60.000 0.00 0.00 0.00 4.70
892 893 0.967380 CCAACCTTCCATGTGAGCCC 60.967 60.000 0.00 0.00 0.00 5.19
893 894 0.967380 CAACCTTCCATGTGAGCCCC 60.967 60.000 0.00 0.00 0.00 5.80
894 895 1.434513 AACCTTCCATGTGAGCCCCA 61.435 55.000 0.00 0.00 0.00 4.96
895 896 1.379044 CCTTCCATGTGAGCCCCAC 60.379 63.158 0.00 0.29 45.88 4.61
896 897 1.687612 CTTCCATGTGAGCCCCACT 59.312 57.895 8.11 0.00 45.86 4.00
897 898 0.393537 CTTCCATGTGAGCCCCACTC 60.394 60.000 8.11 0.00 45.86 3.51
898 899 1.852157 TTCCATGTGAGCCCCACTCC 61.852 60.000 8.11 0.00 45.61 3.85
899 900 2.605607 CCATGTGAGCCCCACTCCA 61.606 63.158 8.11 0.00 45.61 3.86
900 901 1.377725 CATGTGAGCCCCACTCCAC 60.378 63.158 8.11 0.00 45.61 4.02
901 902 2.606587 ATGTGAGCCCCACTCCACC 61.607 63.158 8.11 0.00 45.61 4.61
902 903 4.394712 GTGAGCCCCACTCCACCG 62.395 72.222 0.07 0.00 45.61 4.94
903 904 4.954118 TGAGCCCCACTCCACCGT 62.954 66.667 0.00 0.00 45.61 4.83
904 905 4.083862 GAGCCCCACTCCACCGTC 62.084 72.222 0.00 0.00 39.75 4.79
905 906 4.640690 AGCCCCACTCCACCGTCT 62.641 66.667 0.00 0.00 0.00 4.18
906 907 4.394712 GCCCCACTCCACCGTCTG 62.395 72.222 0.00 0.00 0.00 3.51
907 908 2.603473 CCCCACTCCACCGTCTGA 60.603 66.667 0.00 0.00 0.00 3.27
908 909 2.650116 CCCCACTCCACCGTCTGAG 61.650 68.421 0.00 0.00 34.73 3.35
909 910 1.606601 CCCACTCCACCGTCTGAGA 60.607 63.158 2.33 0.00 32.84 3.27
910 911 1.185618 CCCACTCCACCGTCTGAGAA 61.186 60.000 2.33 0.00 32.84 2.87
911 912 0.898320 CCACTCCACCGTCTGAGAAT 59.102 55.000 2.33 0.00 32.84 2.40
912 913 1.276421 CCACTCCACCGTCTGAGAATT 59.724 52.381 2.33 0.00 32.84 2.17
913 914 2.496070 CCACTCCACCGTCTGAGAATTA 59.504 50.000 2.33 0.00 32.84 1.40
914 915 3.133003 CCACTCCACCGTCTGAGAATTAT 59.867 47.826 2.33 0.00 32.84 1.28
915 916 4.115516 CACTCCACCGTCTGAGAATTATG 58.884 47.826 2.33 0.00 32.84 1.90
916 917 3.133003 ACTCCACCGTCTGAGAATTATGG 59.867 47.826 2.33 0.00 32.84 2.74
917 918 2.158957 TCCACCGTCTGAGAATTATGGC 60.159 50.000 0.00 0.00 0.00 4.40
918 919 1.860950 CACCGTCTGAGAATTATGGCG 59.139 52.381 0.00 0.00 0.00 5.69
919 920 1.754803 ACCGTCTGAGAATTATGGCGA 59.245 47.619 0.00 0.00 0.00 5.54
920 921 2.167693 ACCGTCTGAGAATTATGGCGAA 59.832 45.455 0.00 0.00 0.00 4.70
921 922 3.194861 CCGTCTGAGAATTATGGCGAAA 58.805 45.455 0.00 0.00 0.00 3.46
922 923 3.246226 CCGTCTGAGAATTATGGCGAAAG 59.754 47.826 0.00 0.00 0.00 2.62
923 924 3.865745 CGTCTGAGAATTATGGCGAAAGT 59.134 43.478 0.00 0.00 0.00 2.66
931 932 2.910688 TATGGCGAAAGTGGGAGATC 57.089 50.000 0.00 0.00 0.00 2.75
951 955 6.169800 AGATCTCTTCCTACAAAAGCAGAAC 58.830 40.000 0.00 0.00 0.00 3.01
952 956 4.642429 TCTCTTCCTACAAAAGCAGAACC 58.358 43.478 0.00 0.00 0.00 3.62
954 958 4.985538 TCTTCCTACAAAAGCAGAACCAT 58.014 39.130 0.00 0.00 0.00 3.55
960 964 0.883833 AAAAGCAGAACCATGAGCCG 59.116 50.000 0.00 0.00 0.00 5.52
1027 1034 1.517210 GATACCGTCGCTCCTCCTCC 61.517 65.000 0.00 0.00 0.00 4.30
1032 1039 1.826487 GTCGCTCCTCCTCCTCCTC 60.826 68.421 0.00 0.00 0.00 3.71
1041 1048 0.185416 TCCTCCTCCTCGTCATACCC 59.815 60.000 0.00 0.00 0.00 3.69
1047 1054 2.025727 CTCGTCATACCCGCCGTC 59.974 66.667 0.00 0.00 0.00 4.79
1079 1092 0.241213 GGCGGGAAGAAAAAGCTGAC 59.759 55.000 0.00 0.00 0.00 3.51
1091 1104 2.358615 GCTGACGCACATCCACCA 60.359 61.111 0.00 0.00 35.78 4.17
1097 1110 0.320421 ACGCACATCCACCAGTACAC 60.320 55.000 0.00 0.00 0.00 2.90
1098 1111 0.037326 CGCACATCCACCAGTACACT 60.037 55.000 0.00 0.00 0.00 3.55
1108 1121 0.454620 CCAGTACACTCACGAGACGC 60.455 60.000 0.00 0.00 0.00 5.19
1155 1168 4.452733 CTCGTGCCGTCCCCCTTC 62.453 72.222 0.00 0.00 0.00 3.46
1261 1274 0.597637 GTACCAGGGCATCATCGTCG 60.598 60.000 0.00 0.00 0.00 5.12
1369 1382 2.273776 GCTCCTTCCAGGGCTTCC 59.726 66.667 0.00 0.00 35.59 3.46
1374 1387 1.925455 CTTCCAGGGCTTCCAGGGA 60.925 63.158 0.00 0.00 37.75 4.20
1393 1406 3.257561 CCTCCGAGCGCAACATCG 61.258 66.667 11.47 10.34 38.65 3.84
1403 1416 3.803082 CAACATCGTGGGCGGCAG 61.803 66.667 12.47 1.09 38.89 4.85
1455 1468 2.186384 CTCAAGCTCCTCGGCCAG 59.814 66.667 2.24 0.00 0.00 4.85
1457 1470 1.684386 CTCAAGCTCCTCGGCCAGAT 61.684 60.000 2.24 0.00 0.00 2.90
1488 1507 0.452585 CCTCCGAGGTCGACTTCTTC 59.547 60.000 23.25 11.66 43.02 2.87
1550 1569 6.047231 GTGGTTGCTAAATTATCTAGGACGT 58.953 40.000 0.00 0.00 0.00 4.34
1590 1609 0.321298 GTGTATCGGGTGGTTGTGCT 60.321 55.000 0.00 0.00 0.00 4.40
1685 1704 1.662438 CCAGTGTGTGGCAAAACCGT 61.662 55.000 0.00 0.00 43.94 4.83
1692 1711 1.378646 TGGCAAAACCGTCCACACA 60.379 52.632 0.00 0.00 43.94 3.72
1699 1718 3.702048 CCGTCCACACATCCGGGT 61.702 66.667 0.00 0.00 36.84 5.28
1728 1747 4.947147 GCTGCCCACACGACCCAA 62.947 66.667 0.00 0.00 0.00 4.12
1737 1756 3.857038 ACGACCCAACACGCCAGT 61.857 61.111 0.00 0.00 0.00 4.00
1754 1773 3.702048 TCGTCCCGGGCTCCTTTG 61.702 66.667 18.49 0.00 0.00 2.77
1852 1872 1.300963 GGCAACCAGAGCAGATCCA 59.699 57.895 0.00 0.00 0.00 3.41
1867 1887 1.056700 ATCCATAGCGCCTTCCCACT 61.057 55.000 2.29 0.00 0.00 4.00
1883 1917 1.772567 ACTGCTAACCACCCACCCA 60.773 57.895 0.00 0.00 0.00 4.51
1886 1920 2.349755 CTAACCACCCACCCACCG 59.650 66.667 0.00 0.00 0.00 4.94
1925 1963 2.939261 GCCCTCCCAAGACGACGAA 61.939 63.158 0.00 0.00 0.00 3.85
1944 1982 4.021016 ACGAACTAAAGCAAGTGGATCTCT 60.021 41.667 0.00 0.00 0.00 3.10
1965 2003 3.165875 TGATCTCCTTCTGTTTCTCGGT 58.834 45.455 0.00 0.00 0.00 4.69
1974 2012 5.047943 CCTTCTGTTTCTCGGTCTTCTTCTA 60.048 44.000 0.00 0.00 0.00 2.10
2146 2189 4.043200 GGTTGGCTTGGTGCGAGC 62.043 66.667 0.00 0.00 44.05 5.03
2165 2208 3.424703 AGCAGTTGGTAATGAAGCATGT 58.575 40.909 0.00 0.00 35.03 3.21
2179 2222 6.048732 TGAAGCATGTGTAGGAATCACTAA 57.951 37.500 0.00 0.00 36.83 2.24
2231 2275 7.238710 GCATAGGGAGGGAGGAAAAATAATTA 58.761 38.462 0.00 0.00 0.00 1.40
2293 2337 5.163622 CCTTAGTTGCCACCATGTTATCTTG 60.164 44.000 0.00 0.00 0.00 3.02
2337 2381 1.536766 TCTGTTGCCATCGCTTCAAAG 59.463 47.619 0.00 0.00 35.36 2.77
2410 2455 1.580942 CCATGAGGTGTTGGTTGCG 59.419 57.895 0.00 0.00 0.00 4.85
2414 2459 0.178301 TGAGGTGTTGGTTGCGTACA 59.822 50.000 0.00 0.00 0.00 2.90
2470 2515 1.522258 CGTGCAAACAACAAGAATGCC 59.478 47.619 0.00 0.00 36.20 4.40
2513 2559 5.444122 GTTCTTGTTCATGCAGTGACTAAC 58.556 41.667 0.00 0.00 36.32 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.059325 CCTCTGTTTCAAGTGCTTTCGAG 60.059 47.826 0.00 0.00 0.00 4.04
3 4 2.872245 CCTCTGTTTCAAGTGCTTTCGA 59.128 45.455 0.00 0.00 0.00 3.71
4 5 2.603173 GCCTCTGTTTCAAGTGCTTTCG 60.603 50.000 0.00 0.00 0.00 3.46
5 6 2.287849 GGCCTCTGTTTCAAGTGCTTTC 60.288 50.000 0.00 0.00 0.00 2.62
6 7 1.683385 GGCCTCTGTTTCAAGTGCTTT 59.317 47.619 0.00 0.00 0.00 3.51
7 8 1.322442 GGCCTCTGTTTCAAGTGCTT 58.678 50.000 0.00 0.00 0.00 3.91
8 9 0.886490 CGGCCTCTGTTTCAAGTGCT 60.886 55.000 0.00 0.00 0.00 4.40
9 10 0.884704 TCGGCCTCTGTTTCAAGTGC 60.885 55.000 0.00 0.00 0.00 4.40
10 11 1.264288 GTTCGGCCTCTGTTTCAAGTG 59.736 52.381 0.00 0.00 0.00 3.16
11 12 1.134220 TGTTCGGCCTCTGTTTCAAGT 60.134 47.619 0.00 0.00 0.00 3.16
12 13 1.532868 CTGTTCGGCCTCTGTTTCAAG 59.467 52.381 0.00 0.00 0.00 3.02
13 14 1.593196 CTGTTCGGCCTCTGTTTCAA 58.407 50.000 0.00 0.00 0.00 2.69
14 15 0.250295 CCTGTTCGGCCTCTGTTTCA 60.250 55.000 0.00 0.00 0.00 2.69
15 16 0.250338 ACCTGTTCGGCCTCTGTTTC 60.250 55.000 0.00 0.00 35.61 2.78
16 17 0.250338 GACCTGTTCGGCCTCTGTTT 60.250 55.000 0.00 0.00 35.61 2.83
17 18 1.371558 GACCTGTTCGGCCTCTGTT 59.628 57.895 0.00 0.00 35.61 3.16
18 19 1.821061 CTGACCTGTTCGGCCTCTGT 61.821 60.000 0.00 0.00 35.61 3.41
19 20 1.079543 CTGACCTGTTCGGCCTCTG 60.080 63.158 0.00 0.00 35.61 3.35
20 21 3.382111 CTGACCTGTTCGGCCTCT 58.618 61.111 0.00 0.00 35.61 3.69
25 26 1.949847 ATCTCGGCTGACCTGTTCGG 61.950 60.000 0.00 0.00 39.35 4.30
26 27 0.526524 GATCTCGGCTGACCTGTTCG 60.527 60.000 0.00 0.00 0.00 3.95
27 28 0.820871 AGATCTCGGCTGACCTGTTC 59.179 55.000 0.00 0.00 0.00 3.18
28 29 0.820871 GAGATCTCGGCTGACCTGTT 59.179 55.000 7.04 0.00 0.00 3.16
29 30 1.040339 GGAGATCTCGGCTGACCTGT 61.040 60.000 16.46 0.00 0.00 4.00
30 31 1.739049 GGAGATCTCGGCTGACCTG 59.261 63.158 16.46 0.00 0.00 4.00
31 32 1.456705 GGGAGATCTCGGCTGACCT 60.457 63.158 16.46 0.00 0.00 3.85
32 33 1.456705 AGGGAGATCTCGGCTGACC 60.457 63.158 16.46 10.56 0.00 4.02
33 34 1.460273 GGAGGGAGATCTCGGCTGAC 61.460 65.000 16.46 1.38 34.74 3.51
34 35 1.152652 GGAGGGAGATCTCGGCTGA 60.153 63.158 16.46 0.00 34.74 4.26
35 36 1.152567 AGGAGGGAGATCTCGGCTG 60.153 63.158 16.46 0.00 34.74 4.85
36 37 1.152830 GAGGAGGGAGATCTCGGCT 59.847 63.158 16.46 0.00 34.74 5.52
37 38 0.893727 GAGAGGAGGGAGATCTCGGC 60.894 65.000 16.46 7.93 34.74 5.54
38 39 0.251165 GGAGAGGAGGGAGATCTCGG 60.251 65.000 16.46 0.00 40.32 4.63
39 40 0.605319 CGGAGAGGAGGGAGATCTCG 60.605 65.000 16.46 0.00 40.32 4.04
40 41 0.251165 CCGGAGAGGAGGGAGATCTC 60.251 65.000 14.75 14.75 45.00 2.75
41 42 1.850549 CCGGAGAGGAGGGAGATCT 59.149 63.158 0.00 0.00 45.00 2.75
42 43 1.906333 GCCGGAGAGGAGGGAGATC 60.906 68.421 5.05 0.00 45.00 2.75
43 44 2.200092 GCCGGAGAGGAGGGAGAT 59.800 66.667 5.05 0.00 45.00 2.75
44 45 4.507916 CGCCGGAGAGGAGGGAGA 62.508 72.222 5.05 0.00 45.00 3.71
45 46 4.507916 TCGCCGGAGAGGAGGGAG 62.508 72.222 5.05 0.00 45.00 4.30
46 47 4.816984 GTCGCCGGAGAGGAGGGA 62.817 72.222 8.65 0.00 45.00 4.20
49 50 3.578272 CTCGTCGCCGGAGAGGAG 61.578 72.222 33.30 33.30 45.00 3.69
71 72 4.593864 GATCCAGGTCGCGCTCCC 62.594 72.222 5.56 4.75 0.00 4.30
72 73 4.593864 GGATCCAGGTCGCGCTCC 62.594 72.222 6.95 8.21 0.00 4.70
73 74 3.838271 TGGATCCAGGTCGCGCTC 61.838 66.667 11.44 0.00 0.00 5.03
74 75 4.148825 GTGGATCCAGGTCGCGCT 62.149 66.667 16.81 0.00 0.00 5.92
76 77 4.530857 GGGTGGATCCAGGTCGCG 62.531 72.222 16.81 0.00 38.11 5.87
77 78 4.530857 CGGGTGGATCCAGGTCGC 62.531 72.222 16.81 11.20 38.11 5.19
78 79 4.530857 GCGGGTGGATCCAGGTCG 62.531 72.222 16.81 19.21 38.11 4.79
79 80 4.176752 GGCGGGTGGATCCAGGTC 62.177 72.222 16.81 5.38 38.11 3.85
94 95 1.237285 AATATGAAGATGGCGGCGGC 61.237 55.000 27.76 27.76 38.90 6.53
95 96 0.798776 GAATATGAAGATGGCGGCGG 59.201 55.000 9.78 0.00 0.00 6.13
96 97 1.462283 CAGAATATGAAGATGGCGGCG 59.538 52.381 0.51 0.51 0.00 6.46
97 98 1.808945 CCAGAATATGAAGATGGCGGC 59.191 52.381 0.00 0.00 0.00 6.53
98 99 3.407424 TCCAGAATATGAAGATGGCGG 57.593 47.619 0.00 0.00 0.00 6.13
99 100 5.059161 TCTTTCCAGAATATGAAGATGGCG 58.941 41.667 0.00 0.00 0.00 5.69
100 101 7.521871 AATCTTTCCAGAATATGAAGATGGC 57.478 36.000 0.00 0.00 34.40 4.40
109 110 9.071164 GCGCAAGAGGAAATCTTTCCAGAATAT 62.071 40.741 20.76 2.19 46.49 1.28
110 111 7.841735 GCGCAAGAGGAAATCTTTCCAGAATA 61.842 42.308 20.76 0.00 46.49 1.75
111 112 7.114204 GCGCAAGAGGAAATCTTTCCAGAAT 62.114 44.000 20.76 3.18 46.49 2.40
112 113 5.868763 GCGCAAGAGGAAATCTTTCCAGAA 61.869 45.833 20.76 0.00 46.49 3.02
113 114 4.422712 GCGCAAGAGGAAATCTTTCCAGA 61.423 47.826 20.76 0.00 46.49 3.86
114 115 2.159462 GCGCAAGAGGAAATCTTTCCAG 60.159 50.000 20.76 10.39 46.49 3.86
115 116 1.812571 GCGCAAGAGGAAATCTTTCCA 59.187 47.619 20.76 0.00 46.49 3.53
116 117 1.133216 GGCGCAAGAGGAAATCTTTCC 59.867 52.381 10.83 12.83 46.49 3.13
117 118 1.812571 TGGCGCAAGAGGAAATCTTTC 59.187 47.619 10.83 0.00 46.49 2.62
118 119 1.909700 TGGCGCAAGAGGAAATCTTT 58.090 45.000 10.83 0.00 46.49 2.52
120 121 2.843701 CTATGGCGCAAGAGGAAATCT 58.156 47.619 10.83 0.00 41.27 2.40
121 122 1.265365 GCTATGGCGCAAGAGGAAATC 59.735 52.381 10.83 0.00 43.02 2.17
122 123 1.312815 GCTATGGCGCAAGAGGAAAT 58.687 50.000 10.83 0.00 43.02 2.17
123 124 2.780595 GCTATGGCGCAAGAGGAAA 58.219 52.632 10.83 0.00 43.02 3.13
124 125 4.540153 GCTATGGCGCAAGAGGAA 57.460 55.556 10.83 0.00 43.02 3.36
168 169 1.452108 GGGATCTGCCGTTCCTTGG 60.452 63.158 5.36 0.00 37.63 3.61
169 170 1.815421 CGGGATCTGCCGTTCCTTG 60.815 63.158 1.53 0.00 37.63 3.61
170 171 2.584608 CGGGATCTGCCGTTCCTT 59.415 61.111 1.53 0.00 37.63 3.36
171 172 4.162690 GCGGGATCTGCCGTTCCT 62.163 66.667 11.83 0.00 37.63 3.36
172 173 4.467084 TGCGGGATCTGCCGTTCC 62.467 66.667 11.83 0.00 37.63 3.62
173 174 2.892425 CTGCGGGATCTGCCGTTC 60.892 66.667 11.83 0.00 37.63 3.95
179 180 4.899239 GACCGGCTGCGGGATCTG 62.899 72.222 29.90 6.10 0.00 2.90
186 187 3.976701 AAATCCTGGACCGGCTGCG 62.977 63.158 0.00 0.00 0.00 5.18
187 188 2.044946 AAATCCTGGACCGGCTGC 60.045 61.111 0.00 0.00 0.00 5.25
188 189 2.409870 GCAAATCCTGGACCGGCTG 61.410 63.158 0.00 0.00 0.00 4.85
189 190 2.044946 GCAAATCCTGGACCGGCT 60.045 61.111 0.00 0.00 0.00 5.52
190 191 2.361104 TGCAAATCCTGGACCGGC 60.361 61.111 0.00 3.29 0.00 6.13
191 192 3.590824 GTGCAAATCCTGGACCGG 58.409 61.111 0.00 0.00 40.36 5.28
194 195 1.598701 GGCTGGTGCAAATCCTGGAC 61.599 60.000 0.00 0.00 45.25 4.02
195 196 1.304381 GGCTGGTGCAAATCCTGGA 60.304 57.895 0.00 0.00 41.91 3.86
196 197 2.703798 CGGCTGGTGCAAATCCTGG 61.704 63.158 0.00 0.00 41.91 4.45
197 198 2.703798 CCGGCTGGTGCAAATCCTG 61.704 63.158 2.29 0.00 41.91 3.86
198 199 2.361610 CCGGCTGGTGCAAATCCT 60.362 61.111 2.29 0.00 41.91 3.24
199 200 4.133796 GCCGGCTGGTGCAAATCC 62.134 66.667 22.15 0.00 41.91 3.01
200 201 4.481112 CGCCGGCTGGTGCAAATC 62.481 66.667 26.68 0.00 39.30 2.17
216 217 3.655810 GACTGGAGCTGGAGGTGCG 62.656 68.421 0.00 0.00 36.64 5.34
217 218 2.267324 GACTGGAGCTGGAGGTGC 59.733 66.667 0.00 0.00 0.00 5.01
218 219 1.536073 TTCGACTGGAGCTGGAGGTG 61.536 60.000 0.00 0.00 0.00 4.00
219 220 1.228894 TTCGACTGGAGCTGGAGGT 60.229 57.895 0.00 0.00 0.00 3.85
220 221 1.216710 GTTCGACTGGAGCTGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
221 222 1.216710 GGTTCGACTGGAGCTGGAG 59.783 63.158 0.00 0.00 0.00 3.86
222 223 2.636412 CGGTTCGACTGGAGCTGGA 61.636 63.158 0.00 0.00 0.00 3.86
223 224 2.125912 CGGTTCGACTGGAGCTGG 60.126 66.667 0.00 0.00 0.00 4.85
224 225 2.811317 GCGGTTCGACTGGAGCTG 60.811 66.667 0.00 0.00 35.51 4.24
225 226 4.070552 GGCGGTTCGACTGGAGCT 62.071 66.667 0.00 0.00 0.00 4.09
227 228 3.358076 GAGGGCGGTTCGACTGGAG 62.358 68.421 0.00 0.00 34.07 3.86
228 229 3.379445 GAGGGCGGTTCGACTGGA 61.379 66.667 0.00 0.00 34.07 3.86
229 230 3.649277 CTGAGGGCGGTTCGACTGG 62.649 68.421 0.00 0.00 34.07 4.00
230 231 1.949847 ATCTGAGGGCGGTTCGACTG 61.950 60.000 0.00 0.00 34.07 3.51
231 232 1.668101 GATCTGAGGGCGGTTCGACT 61.668 60.000 0.00 0.00 34.07 4.18
232 233 1.227002 GATCTGAGGGCGGTTCGAC 60.227 63.158 0.00 0.00 0.00 4.20
233 234 2.423898 GGATCTGAGGGCGGTTCGA 61.424 63.158 0.00 0.00 0.00 3.71
234 235 2.107141 GGATCTGAGGGCGGTTCG 59.893 66.667 0.00 0.00 0.00 3.95
235 236 2.506472 GGGATCTGAGGGCGGTTC 59.494 66.667 0.00 0.00 0.00 3.62
236 237 3.470888 CGGGATCTGAGGGCGGTT 61.471 66.667 0.00 0.00 0.00 4.44
237 238 4.458829 TCGGGATCTGAGGGCGGT 62.459 66.667 0.00 0.00 0.00 5.68
238 239 3.917760 GTCGGGATCTGAGGGCGG 61.918 72.222 0.00 0.00 0.00 6.13
239 240 4.271816 CGTCGGGATCTGAGGGCG 62.272 72.222 0.00 0.00 0.00 6.13
240 241 2.833582 TCGTCGGGATCTGAGGGC 60.834 66.667 0.00 0.00 0.00 5.19
241 242 2.851071 GCTCGTCGGGATCTGAGGG 61.851 68.421 0.00 0.00 0.00 4.30
242 243 2.725008 GCTCGTCGGGATCTGAGG 59.275 66.667 0.00 0.00 0.00 3.86
243 244 1.826054 AGGCTCGTCGGGATCTGAG 60.826 63.158 0.00 0.00 0.00 3.35
244 245 2.121538 CAGGCTCGTCGGGATCTGA 61.122 63.158 9.44 0.00 31.42 3.27
245 246 2.121538 TCAGGCTCGTCGGGATCTG 61.122 63.158 0.00 2.74 0.00 2.90
246 247 2.122167 GTCAGGCTCGTCGGGATCT 61.122 63.158 0.00 0.00 0.00 2.75
247 248 2.343163 CTGTCAGGCTCGTCGGGATC 62.343 65.000 0.00 0.00 0.00 3.36
248 249 2.362503 TGTCAGGCTCGTCGGGAT 60.363 61.111 0.00 0.00 0.00 3.85
249 250 3.062466 CTGTCAGGCTCGTCGGGA 61.062 66.667 0.00 0.00 0.00 5.14
250 251 3.062466 TCTGTCAGGCTCGTCGGG 61.062 66.667 0.00 0.00 0.00 5.14
251 252 2.179517 GTCTGTCAGGCTCGTCGG 59.820 66.667 0.00 0.00 0.00 4.79
252 253 2.179517 GGTCTGTCAGGCTCGTCG 59.820 66.667 4.09 0.00 0.00 5.12
253 254 2.179517 CGGTCTGTCAGGCTCGTC 59.820 66.667 4.09 0.00 0.00 4.20
254 255 2.282251 TCGGTCTGTCAGGCTCGT 60.282 61.111 4.09 0.00 0.00 4.18
255 256 2.487428 CTCGGTCTGTCAGGCTCG 59.513 66.667 4.09 6.69 0.00 5.03
256 257 2.183046 GCTCGGTCTGTCAGGCTC 59.817 66.667 4.09 0.00 0.00 4.70
257 258 3.386237 GGCTCGGTCTGTCAGGCT 61.386 66.667 4.09 0.00 0.00 4.58
258 259 4.459089 GGGCTCGGTCTGTCAGGC 62.459 72.222 0.00 0.00 0.00 4.85
259 260 4.135153 CGGGCTCGGTCTGTCAGG 62.135 72.222 0.00 0.00 0.00 3.86
269 270 2.341543 CCATCATCTCCGGGCTCG 59.658 66.667 0.00 0.00 0.00 5.03
270 271 2.746359 CCCATCATCTCCGGGCTC 59.254 66.667 0.00 0.00 31.89 4.70
273 274 1.699054 TTCAGCCCATCATCTCCGGG 61.699 60.000 0.00 0.00 43.42 5.73
274 275 0.250209 CTTCAGCCCATCATCTCCGG 60.250 60.000 0.00 0.00 0.00 5.14
275 276 0.883814 GCTTCAGCCCATCATCTCCG 60.884 60.000 0.00 0.00 34.31 4.63
276 277 3.018479 GCTTCAGCCCATCATCTCC 57.982 57.895 0.00 0.00 34.31 3.71
287 288 1.376553 GTGTCCTCCAGGCTTCAGC 60.377 63.158 0.00 0.00 41.14 4.26
288 289 1.298014 GGTGTCCTCCAGGCTTCAG 59.702 63.158 0.00 0.00 34.44 3.02
289 290 2.583441 CGGTGTCCTCCAGGCTTCA 61.583 63.158 0.00 0.00 34.44 3.02
290 291 2.266055 CGGTGTCCTCCAGGCTTC 59.734 66.667 0.00 0.00 34.44 3.86
291 292 2.203788 TCGGTGTCCTCCAGGCTT 60.204 61.111 0.00 0.00 34.44 4.35
292 293 2.997897 GTCGGTGTCCTCCAGGCT 60.998 66.667 0.00 0.00 34.44 4.58
293 294 4.436998 CGTCGGTGTCCTCCAGGC 62.437 72.222 0.00 0.00 34.44 4.85
294 295 4.436998 GCGTCGGTGTCCTCCAGG 62.437 72.222 0.00 0.00 0.00 4.45
295 296 3.633094 CTGCGTCGGTGTCCTCCAG 62.633 68.421 0.00 0.00 0.00 3.86
296 297 3.680786 CTGCGTCGGTGTCCTCCA 61.681 66.667 0.00 0.00 0.00 3.86
297 298 4.436998 CCTGCGTCGGTGTCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
298 299 4.436998 CCCTGCGTCGGTGTCCTC 62.437 72.222 0.00 0.00 0.00 3.71
345 346 4.821589 CCCGCTGTCCTTCCGCTC 62.822 72.222 0.00 0.00 0.00 5.03
775 776 1.117994 ACTTACTTACCCCCGCTAGC 58.882 55.000 4.06 4.06 0.00 3.42
776 777 3.029570 AGAACTTACTTACCCCCGCTAG 58.970 50.000 0.00 0.00 0.00 3.42
777 778 3.026694 GAGAACTTACTTACCCCCGCTA 58.973 50.000 0.00 0.00 0.00 4.26
778 779 1.829849 GAGAACTTACTTACCCCCGCT 59.170 52.381 0.00 0.00 0.00 5.52
779 780 1.829849 AGAGAACTTACTTACCCCCGC 59.170 52.381 0.00 0.00 0.00 6.13
780 781 2.098770 CGAGAGAACTTACTTACCCCCG 59.901 54.545 0.00 0.00 0.00 5.73
781 782 2.429971 CCGAGAGAACTTACTTACCCCC 59.570 54.545 0.00 0.00 0.00 5.40
782 783 3.359950 TCCGAGAGAACTTACTTACCCC 58.640 50.000 0.00 0.00 0.00 4.95
783 784 5.595257 AATCCGAGAGAACTTACTTACCC 57.405 43.478 0.00 0.00 0.00 3.69
784 785 7.321908 AGAAAATCCGAGAGAACTTACTTACC 58.678 38.462 0.00 0.00 0.00 2.85
785 786 8.648968 CAAGAAAATCCGAGAGAACTTACTTAC 58.351 37.037 0.00 0.00 0.00 2.34
786 787 8.582437 TCAAGAAAATCCGAGAGAACTTACTTA 58.418 33.333 0.00 0.00 0.00 2.24
787 788 7.442656 TCAAGAAAATCCGAGAGAACTTACTT 58.557 34.615 0.00 0.00 0.00 2.24
788 789 6.994221 TCAAGAAAATCCGAGAGAACTTACT 58.006 36.000 0.00 0.00 0.00 2.24
789 790 6.183360 GCTCAAGAAAATCCGAGAGAACTTAC 60.183 42.308 0.00 0.00 0.00 2.34
790 791 5.869888 GCTCAAGAAAATCCGAGAGAACTTA 59.130 40.000 0.00 0.00 0.00 2.24
791 792 4.693095 GCTCAAGAAAATCCGAGAGAACTT 59.307 41.667 0.00 0.00 0.00 2.66
792 793 4.020662 AGCTCAAGAAAATCCGAGAGAACT 60.021 41.667 0.00 0.00 0.00 3.01
793 794 4.092675 CAGCTCAAGAAAATCCGAGAGAAC 59.907 45.833 0.00 0.00 0.00 3.01
794 795 4.021104 TCAGCTCAAGAAAATCCGAGAGAA 60.021 41.667 0.00 0.00 0.00 2.87
795 796 3.511540 TCAGCTCAAGAAAATCCGAGAGA 59.488 43.478 0.00 0.00 0.00 3.10
796 797 3.854666 TCAGCTCAAGAAAATCCGAGAG 58.145 45.455 0.00 0.00 0.00 3.20
797 798 3.368843 CCTCAGCTCAAGAAAATCCGAGA 60.369 47.826 0.00 0.00 0.00 4.04
798 799 2.935201 CCTCAGCTCAAGAAAATCCGAG 59.065 50.000 0.00 0.00 0.00 4.63
799 800 2.936993 GCCTCAGCTCAAGAAAATCCGA 60.937 50.000 0.00 0.00 35.50 4.55
800 801 1.399791 GCCTCAGCTCAAGAAAATCCG 59.600 52.381 0.00 0.00 35.50 4.18
801 802 1.399791 CGCCTCAGCTCAAGAAAATCC 59.600 52.381 0.00 0.00 36.60 3.01
802 803 1.202121 GCGCCTCAGCTCAAGAAAATC 60.202 52.381 0.00 0.00 36.60 2.17
803 804 0.807496 GCGCCTCAGCTCAAGAAAAT 59.193 50.000 0.00 0.00 36.60 1.82
804 805 1.237285 GGCGCCTCAGCTCAAGAAAA 61.237 55.000 22.15 0.00 36.60 2.29
805 806 1.672356 GGCGCCTCAGCTCAAGAAA 60.672 57.895 22.15 0.00 36.60 2.52
806 807 2.046892 GGCGCCTCAGCTCAAGAA 60.047 61.111 22.15 0.00 36.60 2.52
807 808 3.313524 TGGCGCCTCAGCTCAAGA 61.314 61.111 29.70 0.00 36.60 3.02
808 809 3.123620 GTGGCGCCTCAGCTCAAG 61.124 66.667 29.70 0.00 36.60 3.02
809 810 4.704833 GGTGGCGCCTCAGCTCAA 62.705 66.667 29.70 0.07 36.60 3.02
822 823 3.993614 TAATGCAGCCTGGCGGTGG 62.994 63.158 19.80 9.20 40.49 4.61
823 824 1.386525 AATAATGCAGCCTGGCGGTG 61.387 55.000 19.80 11.83 43.15 4.94
824 825 1.076777 AATAATGCAGCCTGGCGGT 60.077 52.632 19.80 3.25 36.28 5.68
825 826 1.361271 CAATAATGCAGCCTGGCGG 59.639 57.895 14.82 14.82 36.28 6.13
836 837 4.578105 GGGAGAACTGGAGAAGCAATAATG 59.422 45.833 0.00 0.00 0.00 1.90
837 838 4.476479 AGGGAGAACTGGAGAAGCAATAAT 59.524 41.667 0.00 0.00 0.00 1.28
838 839 3.846588 AGGGAGAACTGGAGAAGCAATAA 59.153 43.478 0.00 0.00 0.00 1.40
839 840 3.198635 CAGGGAGAACTGGAGAAGCAATA 59.801 47.826 0.00 0.00 34.84 1.90
840 841 2.026449 CAGGGAGAACTGGAGAAGCAAT 60.026 50.000 0.00 0.00 34.84 3.56
841 842 1.349026 CAGGGAGAACTGGAGAAGCAA 59.651 52.381 0.00 0.00 34.84 3.91
842 843 0.979665 CAGGGAGAACTGGAGAAGCA 59.020 55.000 0.00 0.00 34.84 3.91
843 844 0.980423 ACAGGGAGAACTGGAGAAGC 59.020 55.000 0.00 0.00 42.75 3.86
844 845 1.552792 GGACAGGGAGAACTGGAGAAG 59.447 57.143 0.00 0.00 42.75 2.85
845 846 1.645710 GGACAGGGAGAACTGGAGAA 58.354 55.000 0.00 0.00 42.75 2.87
846 847 0.252284 GGGACAGGGAGAACTGGAGA 60.252 60.000 0.00 0.00 42.75 3.71
847 848 1.268283 GGGGACAGGGAGAACTGGAG 61.268 65.000 0.00 0.00 42.75 3.86
848 849 1.229529 GGGGACAGGGAGAACTGGA 60.230 63.158 0.00 0.00 42.75 3.86
849 850 2.301738 GGGGGACAGGGAGAACTGG 61.302 68.421 0.00 0.00 42.75 4.00
850 851 2.660064 CGGGGGACAGGGAGAACTG 61.660 68.421 0.00 0.00 44.03 3.16
851 852 2.284699 CGGGGGACAGGGAGAACT 60.285 66.667 0.00 0.00 0.00 3.01
852 853 4.097361 GCGGGGGACAGGGAGAAC 62.097 72.222 0.00 0.00 0.00 3.01
866 867 3.944250 ATGGAAGGTTGGCTGGCGG 62.944 63.158 0.00 0.00 0.00 6.13
867 868 2.361610 ATGGAAGGTTGGCTGGCG 60.362 61.111 0.00 0.00 0.00 5.69
868 869 1.607467 ACATGGAAGGTTGGCTGGC 60.607 57.895 0.00 0.00 0.00 4.85
869 870 0.251297 TCACATGGAAGGTTGGCTGG 60.251 55.000 0.00 0.00 0.00 4.85
870 871 1.171308 CTCACATGGAAGGTTGGCTG 58.829 55.000 0.00 0.00 0.00 4.85
871 872 0.610232 GCTCACATGGAAGGTTGGCT 60.610 55.000 0.00 0.00 0.00 4.75
872 873 1.598701 GGCTCACATGGAAGGTTGGC 61.599 60.000 0.00 0.00 0.00 4.52
873 874 0.967380 GGGCTCACATGGAAGGTTGG 60.967 60.000 0.00 0.00 0.00 3.77
874 875 0.967380 GGGGCTCACATGGAAGGTTG 60.967 60.000 0.00 0.00 0.00 3.77
875 876 1.384191 GGGGCTCACATGGAAGGTT 59.616 57.895 0.00 0.00 0.00 3.50
876 877 1.852157 TGGGGCTCACATGGAAGGT 60.852 57.895 0.00 0.00 0.00 3.50
877 878 1.379044 GTGGGGCTCACATGGAAGG 60.379 63.158 13.84 0.00 45.39 3.46
878 879 4.326255 GTGGGGCTCACATGGAAG 57.674 61.111 13.84 0.00 45.39 3.46
885 886 4.394712 CGGTGGAGTGGGGCTCAC 62.395 72.222 10.20 10.20 45.88 3.51
886 887 4.954118 ACGGTGGAGTGGGGCTCA 62.954 66.667 0.00 0.00 45.88 4.26
887 888 4.083862 GACGGTGGAGTGGGGCTC 62.084 72.222 0.00 0.00 43.39 4.70
888 889 4.640690 AGACGGTGGAGTGGGGCT 62.641 66.667 0.00 0.00 0.00 5.19
889 890 4.394712 CAGACGGTGGAGTGGGGC 62.395 72.222 0.00 0.00 0.00 5.80
890 891 2.603473 TCAGACGGTGGAGTGGGG 60.603 66.667 0.00 0.00 0.00 4.96
891 892 1.185618 TTCTCAGACGGTGGAGTGGG 61.186 60.000 6.37 0.00 32.93 4.61
892 893 0.898320 ATTCTCAGACGGTGGAGTGG 59.102 55.000 6.37 0.00 32.93 4.00
893 894 2.751166 AATTCTCAGACGGTGGAGTG 57.249 50.000 6.37 0.00 32.93 3.51
894 895 3.133003 CCATAATTCTCAGACGGTGGAGT 59.867 47.826 6.37 0.00 32.93 3.85
895 896 3.722147 CCATAATTCTCAGACGGTGGAG 58.278 50.000 0.00 0.00 0.00 3.86
896 897 2.158957 GCCATAATTCTCAGACGGTGGA 60.159 50.000 0.00 0.00 0.00 4.02
897 898 2.213499 GCCATAATTCTCAGACGGTGG 58.787 52.381 0.00 0.00 0.00 4.61
898 899 1.860950 CGCCATAATTCTCAGACGGTG 59.139 52.381 0.00 0.00 0.00 4.94
899 900 1.754803 TCGCCATAATTCTCAGACGGT 59.245 47.619 0.00 0.00 0.00 4.83
900 901 2.509052 TCGCCATAATTCTCAGACGG 57.491 50.000 0.00 0.00 0.00 4.79
901 902 3.865745 ACTTTCGCCATAATTCTCAGACG 59.134 43.478 0.00 0.00 0.00 4.18
902 903 4.034510 CCACTTTCGCCATAATTCTCAGAC 59.965 45.833 0.00 0.00 0.00 3.51
903 904 4.191544 CCACTTTCGCCATAATTCTCAGA 58.808 43.478 0.00 0.00 0.00 3.27
904 905 3.313526 CCCACTTTCGCCATAATTCTCAG 59.686 47.826 0.00 0.00 0.00 3.35
905 906 3.054728 TCCCACTTTCGCCATAATTCTCA 60.055 43.478 0.00 0.00 0.00 3.27
906 907 3.541632 TCCCACTTTCGCCATAATTCTC 58.458 45.455 0.00 0.00 0.00 2.87
907 908 3.199946 TCTCCCACTTTCGCCATAATTCT 59.800 43.478 0.00 0.00 0.00 2.40
908 909 3.541632 TCTCCCACTTTCGCCATAATTC 58.458 45.455 0.00 0.00 0.00 2.17
909 910 3.644966 TCTCCCACTTTCGCCATAATT 57.355 42.857 0.00 0.00 0.00 1.40
910 911 3.392616 AGATCTCCCACTTTCGCCATAAT 59.607 43.478 0.00 0.00 0.00 1.28
911 912 2.771943 AGATCTCCCACTTTCGCCATAA 59.228 45.455 0.00 0.00 0.00 1.90
912 913 2.365617 GAGATCTCCCACTTTCGCCATA 59.634 50.000 12.00 0.00 0.00 2.74
913 914 1.139853 GAGATCTCCCACTTTCGCCAT 59.860 52.381 12.00 0.00 0.00 4.40
914 915 0.537188 GAGATCTCCCACTTTCGCCA 59.463 55.000 12.00 0.00 0.00 5.69
915 916 0.827368 AGAGATCTCCCACTTTCGCC 59.173 55.000 19.30 0.00 0.00 5.54
916 917 2.545731 GAAGAGATCTCCCACTTTCGC 58.454 52.381 19.30 0.00 0.00 4.70
917 918 2.763448 AGGAAGAGATCTCCCACTTTCG 59.237 50.000 19.30 0.00 0.00 3.46
918 919 4.712337 TGTAGGAAGAGATCTCCCACTTTC 59.288 45.833 19.30 14.73 0.00 2.62
919 920 4.689062 TGTAGGAAGAGATCTCCCACTTT 58.311 43.478 19.30 6.49 0.00 2.66
920 921 4.338795 TGTAGGAAGAGATCTCCCACTT 57.661 45.455 19.30 6.88 0.00 3.16
921 922 4.338795 TTGTAGGAAGAGATCTCCCACT 57.661 45.455 19.30 15.72 0.00 4.00
922 923 5.422214 TTTTGTAGGAAGAGATCTCCCAC 57.578 43.478 19.30 13.84 0.00 4.61
923 924 4.080863 GCTTTTGTAGGAAGAGATCTCCCA 60.081 45.833 19.30 4.21 0.00 4.37
931 932 4.389374 TGGTTCTGCTTTTGTAGGAAGAG 58.611 43.478 0.00 0.00 32.78 2.85
960 964 4.077188 GTTGCTGCTGTCGCCGTC 62.077 66.667 0.00 0.00 34.43 4.79
1017 1021 1.826487 GACGAGGAGGAGGAGGAGC 60.826 68.421 0.00 0.00 0.00 4.70
1027 1034 2.728817 GGCGGGTATGACGAGGAG 59.271 66.667 0.00 0.00 0.00 3.69
1058 1065 1.228154 AGCTTTTTCTTCCCGCCGT 60.228 52.632 0.00 0.00 0.00 5.68
1065 1072 2.755836 TGTGCGTCAGCTTTTTCTTC 57.244 45.000 0.00 0.00 45.42 2.87
1070 1083 0.593128 GTGGATGTGCGTCAGCTTTT 59.407 50.000 0.00 0.00 45.42 2.27
1071 1084 1.237285 GGTGGATGTGCGTCAGCTTT 61.237 55.000 0.00 0.00 45.42 3.51
1079 1092 0.037326 AGTGTACTGGTGGATGTGCG 60.037 55.000 0.00 0.00 0.00 5.34
1091 1104 0.797542 GAGCGTCTCGTGAGTGTACT 59.202 55.000 0.00 0.00 0.00 2.73
1369 1382 4.821589 GCGCTCGGAGGTTCCCTG 62.822 72.222 7.20 0.00 31.76 4.45
1374 1387 1.741770 GATGTTGCGCTCGGAGGTT 60.742 57.895 9.73 0.00 0.00 3.50
1403 1416 3.056313 GCCATCCTGAACTTGCCGC 62.056 63.158 0.00 0.00 0.00 6.53
1406 1419 2.486966 GCGCCATCCTGAACTTGC 59.513 61.111 0.00 0.00 0.00 4.01
1469 1488 0.452585 GAAGAAGTCGACCTCGGAGG 59.547 60.000 22.40 22.40 42.49 4.30
1537 1556 7.387948 GTGGCAATTATTGACGTCCTAGATAAT 59.612 37.037 14.12 13.61 43.38 1.28
1539 1558 6.183360 TGTGGCAATTATTGACGTCCTAGATA 60.183 38.462 14.12 3.73 43.38 1.98
1540 1559 5.057149 GTGGCAATTATTGACGTCCTAGAT 58.943 41.667 14.12 4.70 43.38 1.98
1542 1561 4.034048 GTGTGGCAATTATTGACGTCCTAG 59.966 45.833 14.12 0.00 43.38 3.02
1550 1569 3.550950 CACACGTGTGGCAATTATTGA 57.449 42.857 35.65 0.00 42.10 2.57
1685 1704 0.250553 GTTTGACCCGGATGTGTGGA 60.251 55.000 0.73 0.00 0.00 4.02
1754 1773 2.201771 AGGGCGGACTAGGGATCC 59.798 66.667 1.92 1.92 0.00 3.36
1780 1800 1.448922 GGATCGAGAGGTGGGAGACG 61.449 65.000 0.00 0.00 0.00 4.18
1852 1872 1.048724 TAGCAGTGGGAAGGCGCTAT 61.049 55.000 7.64 0.00 34.18 2.97
1867 1887 2.836187 GGTGGGTGGGTGGTTAGCA 61.836 63.158 0.00 0.00 0.00 3.49
1886 1920 3.658422 GTTGGGGTGGGAGGGGTC 61.658 72.222 0.00 0.00 0.00 4.46
1925 1963 5.424895 AGATCAGAGATCCACTTGCTTTAGT 59.575 40.000 3.52 0.00 0.00 2.24
1944 1982 3.165875 ACCGAGAAACAGAAGGAGATCA 58.834 45.455 0.00 0.00 0.00 2.92
1974 2012 8.726988 CAAATTTGCAATTTCAGATTTCTGGAT 58.273 29.630 5.01 0.66 43.91 3.41
2146 2189 4.771590 ACACATGCTTCATTACCAACTG 57.228 40.909 0.00 0.00 0.00 3.16
2165 2208 8.618240 TCTCCCTATTTTTAGTGATTCCTACA 57.382 34.615 0.00 0.00 0.00 2.74
2179 2222 6.917208 ATTCCTCCTTTCTCTCCCTATTTT 57.083 37.500 0.00 0.00 0.00 1.82
2231 2275 5.227908 CAACTGACGTTAGATACAAGTGGT 58.772 41.667 15.04 0.00 0.00 4.16
2293 2337 6.340522 ACAATAAAATAGGATGGCAAGCAAC 58.659 36.000 0.00 0.00 0.00 4.17
2337 2381 5.545588 TGAATTCTGGATGCTAGCTATCAC 58.454 41.667 17.23 11.03 0.00 3.06
2414 2459 5.415701 ACGGCAATCTTATCACATTTCTTGT 59.584 36.000 0.00 0.00 39.91 3.16
2470 2515 1.650153 CGCATCAACAATCCGCAAAAG 59.350 47.619 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.