Multiple sequence alignment - TraesCS2A01G167600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G167600 chr2A 100.000 2501 0 0 1 2501 120672807 120670307 0.000000e+00 4619.0
1 TraesCS2A01G167600 chr2A 80.000 215 41 2 1977 2190 100527743 100527530 9.260000e-35 158.0
2 TraesCS2A01G167600 chr2A 87.013 77 8 2 1876 1951 750588767 750588842 4.430000e-13 86.1
3 TraesCS2A01G167600 chr2B 90.395 1062 58 22 631 1670 170852686 170851647 0.000000e+00 1356.0
4 TraesCS2A01G167600 chr2B 83.534 249 38 3 2228 2475 443760493 443760739 1.930000e-56 230.0
5 TraesCS2A01G167600 chr2B 80.321 249 48 1 1919 2166 300434731 300434483 1.180000e-43 187.0
6 TraesCS2A01G167600 chr2B 86.250 160 21 1 2032 2190 643687590 643687749 3.310000e-39 172.0
7 TraesCS2A01G167600 chr2D 94.125 834 35 6 730 1549 118805513 118804680 0.000000e+00 1256.0
8 TraesCS2A01G167600 chr2D 89.421 501 43 4 1692 2190 118798848 118798356 7.600000e-175 623.0
9 TraesCS2A01G167600 chr2D 90.378 291 21 2 2212 2501 118783435 118783151 2.350000e-100 375.0
10 TraesCS2A01G167600 chr2D 84.959 246 33 4 2228 2473 337852286 337852045 1.920000e-61 246.0
11 TraesCS2A01G167600 chr2D 100.000 30 0 0 2183 2212 118798315 118798286 3.480000e-04 56.5
12 TraesCS2A01G167600 chr7B 98.141 538 10 0 1 538 726310851 726311388 0.000000e+00 939.0
13 TraesCS2A01G167600 chr7B 80.478 251 41 5 2229 2478 219538364 219538121 4.250000e-43 185.0
14 TraesCS2A01G167600 chr7B 75.273 275 53 13 1920 2189 634872188 634872452 1.570000e-22 117.0
15 TraesCS2A01G167600 chr7B 91.429 70 6 0 560 629 670230792 670230723 2.050000e-16 97.1
16 TraesCS2A01G167600 chr7B 85.366 82 11 1 1876 1956 193330620 193330539 1.590000e-12 84.2
17 TraesCS2A01G167600 chr7B 83.333 90 15 0 2101 2190 654006323 654006412 1.590000e-12 84.2
18 TraesCS2A01G167600 chr3A 98.141 538 10 0 1 538 476153452 476153989 0.000000e+00 939.0
19 TraesCS2A01G167600 chr3A 98.387 496 8 0 1 496 645628593 645628098 0.000000e+00 872.0
20 TraesCS2A01G167600 chr3A 85.714 133 19 0 2343 2475 528517154 528517286 9.330000e-30 141.0
21 TraesCS2A01G167600 chrUn 97.955 538 11 0 1 538 37818579 37818042 0.000000e+00 933.0
22 TraesCS2A01G167600 chr1B 97.955 538 11 0 1 538 558922386 558921849 0.000000e+00 933.0
23 TraesCS2A01G167600 chr1B 80.479 543 92 12 1 538 318992926 318993459 1.080000e-108 403.0
24 TraesCS2A01G167600 chr1B 77.778 288 49 13 1876 2155 449617336 449617056 1.990000e-36 163.0
25 TraesCS2A01G167600 chr6B 97.212 538 15 0 1 538 60113072 60113609 0.000000e+00 911.0
26 TraesCS2A01G167600 chr5A 90.244 533 50 1 7 539 698220272 698219742 0.000000e+00 695.0
27 TraesCS2A01G167600 chr5A 83.442 459 66 5 954 1410 512067670 512067220 3.850000e-113 418.0
28 TraesCS2A01G167600 chr5A 92.000 50 4 0 2183 2232 663387143 663387192 1.240000e-08 71.3
29 TraesCS2A01G167600 chr3B 97.947 341 7 0 1 341 14541416 14541076 2.140000e-165 592.0
30 TraesCS2A01G167600 chr3B 75.380 329 64 12 1874 2190 780880196 780879873 2.590000e-30 143.0
31 TraesCS2A01G167600 chr3B 92.188 64 5 0 564 627 787994999 787995062 9.530000e-15 91.6
32 TraesCS2A01G167600 chr5D 83.186 565 77 13 954 1503 406462569 406462008 3.710000e-138 501.0
33 TraesCS2A01G167600 chr5D 88.050 318 34 4 1133 1448 406422667 406422352 8.450000e-100 374.0
34 TraesCS2A01G167600 chr5D 79.385 325 54 12 1874 2190 212570901 212570582 1.510000e-52 217.0
35 TraesCS2A01G167600 chr5D 78.077 260 52 5 1907 2165 3807413 3807158 2.570000e-35 159.0
36 TraesCS2A01G167600 chr5B 85.837 466 63 3 1039 1503 487471593 487471130 2.240000e-135 492.0
37 TraesCS2A01G167600 chr5B 97.297 37 1 0 563 599 546371890 546371926 2.080000e-06 63.9
38 TraesCS2A01G167600 chr1D 79.684 443 85 4 1052 1490 7034809 7034368 5.190000e-82 315.0
39 TraesCS2A01G167600 chr1D 79.505 444 84 6 1052 1490 7833619 7834060 2.420000e-80 309.0
40 TraesCS2A01G167600 chr1D 78.243 239 38 9 1874 2101 387892707 387892472 9.330000e-30 141.0
41 TraesCS2A01G167600 chr1A 79.101 445 84 8 1052 1490 9476243 9476684 5.230000e-77 298.0
42 TraesCS2A01G167600 chr1A 78.226 248 36 12 1866 2101 487461136 487460895 2.590000e-30 143.0
43 TraesCS2A01G167600 chr1A 84.328 134 20 1 2346 2478 553900646 553900513 2.020000e-26 130.0
44 TraesCS2A01G167600 chr1A 91.667 60 3 2 2175 2232 24079406 24079465 5.730000e-12 82.4
45 TraesCS2A01G167600 chr7A 84.739 249 37 1 2228 2475 493092008 493092256 5.340000e-62 248.0
46 TraesCS2A01G167600 chr7A 89.610 77 8 0 548 624 494754833 494754909 5.690000e-17 99.0
47 TraesCS2A01G167600 chr4D 81.004 279 49 3 1912 2188 481791710 481791434 4.190000e-53 219.0
48 TraesCS2A01G167600 chr4D 81.673 251 41 3 2228 2475 481620159 481619911 1.170000e-48 204.0
49 TraesCS2A01G167600 chr4D 83.663 202 28 4 2233 2434 315802719 315802523 4.250000e-43 185.0
50 TraesCS2A01G167600 chr7D 80.156 257 47 3 1926 2182 453088293 453088545 3.280000e-44 189.0
51 TraesCS2A01G167600 chr7D 81.564 179 26 1 2229 2400 34750954 34751132 9.330000e-30 141.0
52 TraesCS2A01G167600 chr7D 90.000 80 8 0 547 626 443314366 443314445 1.220000e-18 104.0
53 TraesCS2A01G167600 chr4A 88.889 90 10 0 2228 2317 109863724 109863813 7.310000e-21 111.0
54 TraesCS2A01G167600 chr6A 76.699 206 43 4 1873 2074 483594639 483594843 2.630000e-20 110.0
55 TraesCS2A01G167600 chr6A 93.443 61 1 3 480 538 609831061 609831002 1.230000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G167600 chr2A 120670307 120672807 2500 True 4619.00 4619 100.0000 1 2501 1 chr2A.!!$R2 2500
1 TraesCS2A01G167600 chr2B 170851647 170852686 1039 True 1356.00 1356 90.3950 631 1670 1 chr2B.!!$R1 1039
2 TraesCS2A01G167600 chr2D 118804680 118805513 833 True 1256.00 1256 94.1250 730 1549 1 chr2D.!!$R2 819
3 TraesCS2A01G167600 chr2D 118798286 118798848 562 True 339.75 623 94.7105 1692 2212 2 chr2D.!!$R4 520
4 TraesCS2A01G167600 chr7B 726310851 726311388 537 False 939.00 939 98.1410 1 538 1 chr7B.!!$F3 537
5 TraesCS2A01G167600 chr3A 476153452 476153989 537 False 939.00 939 98.1410 1 538 1 chr3A.!!$F1 537
6 TraesCS2A01G167600 chrUn 37818042 37818579 537 True 933.00 933 97.9550 1 538 1 chrUn.!!$R1 537
7 TraesCS2A01G167600 chr1B 558921849 558922386 537 True 933.00 933 97.9550 1 538 1 chr1B.!!$R2 537
8 TraesCS2A01G167600 chr1B 318992926 318993459 533 False 403.00 403 80.4790 1 538 1 chr1B.!!$F1 537
9 TraesCS2A01G167600 chr6B 60113072 60113609 537 False 911.00 911 97.2120 1 538 1 chr6B.!!$F1 537
10 TraesCS2A01G167600 chr5A 698219742 698220272 530 True 695.00 695 90.2440 7 539 1 chr5A.!!$R2 532
11 TraesCS2A01G167600 chr5D 406462008 406462569 561 True 501.00 501 83.1860 954 1503 1 chr5D.!!$R4 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 943 0.45541 TTGCATTGTATTCCAGCGGC 59.545 50.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2030 0.0982 GCGTTTATCTCCGGTTTGCC 59.902 55.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.755179 CCATCGCCTTGTTCCAATCT 58.245 50.000 0.00 0.00 0.00 2.40
548 551 2.951229 CCTAGGGGAAAACACACTGT 57.049 50.000 0.00 0.00 33.58 3.55
550 553 4.360951 CCTAGGGGAAAACACACTGTAA 57.639 45.455 0.00 0.00 33.58 2.41
551 554 4.918588 CCTAGGGGAAAACACACTGTAAT 58.081 43.478 0.00 0.00 33.58 1.89
552 555 4.941873 CCTAGGGGAAAACACACTGTAATC 59.058 45.833 0.00 0.00 33.58 1.75
553 556 4.447138 AGGGGAAAACACACTGTAATCA 57.553 40.909 0.00 0.00 0.00 2.57
554 557 4.398319 AGGGGAAAACACACTGTAATCAG 58.602 43.478 0.00 0.00 46.18 2.90
555 558 3.506067 GGGGAAAACACACTGTAATCAGG 59.494 47.826 0.47 0.00 45.14 3.86
556 559 4.142038 GGGAAAACACACTGTAATCAGGT 58.858 43.478 0.47 0.00 45.14 4.00
557 560 4.583073 GGGAAAACACACTGTAATCAGGTT 59.417 41.667 0.47 0.00 45.14 3.50
558 561 5.278315 GGGAAAACACACTGTAATCAGGTTC 60.278 44.000 0.47 0.00 45.14 3.62
559 562 5.531287 GGAAAACACACTGTAATCAGGTTCT 59.469 40.000 0.47 0.00 45.14 3.01
560 563 6.708949 GGAAAACACACTGTAATCAGGTTCTA 59.291 38.462 0.47 0.00 45.14 2.10
561 564 7.390718 GGAAAACACACTGTAATCAGGTTCTAT 59.609 37.037 0.47 0.00 45.14 1.98
562 565 7.672983 AAACACACTGTAATCAGGTTCTATG 57.327 36.000 0.47 0.00 45.14 2.23
563 566 6.360370 ACACACTGTAATCAGGTTCTATGT 57.640 37.500 0.47 0.00 45.14 2.29
564 567 7.476540 ACACACTGTAATCAGGTTCTATGTA 57.523 36.000 0.47 0.00 45.14 2.29
565 568 8.079211 ACACACTGTAATCAGGTTCTATGTAT 57.921 34.615 0.47 0.00 45.14 2.29
566 569 8.198109 ACACACTGTAATCAGGTTCTATGTATC 58.802 37.037 0.47 0.00 45.14 2.24
567 570 7.653713 CACACTGTAATCAGGTTCTATGTATCC 59.346 40.741 0.47 0.00 45.14 2.59
568 571 7.565398 ACACTGTAATCAGGTTCTATGTATCCT 59.435 37.037 0.47 0.00 45.14 3.24
569 572 9.078990 CACTGTAATCAGGTTCTATGTATCCTA 57.921 37.037 0.47 0.00 45.14 2.94
570 573 9.303116 ACTGTAATCAGGTTCTATGTATCCTAG 57.697 37.037 0.47 0.00 45.14 3.02
571 574 8.123639 TGTAATCAGGTTCTATGTATCCTAGC 57.876 38.462 0.00 0.00 0.00 3.42
572 575 6.613153 AATCAGGTTCTATGTATCCTAGCC 57.387 41.667 0.00 0.00 0.00 3.93
573 576 4.079970 TCAGGTTCTATGTATCCTAGCCG 58.920 47.826 0.00 0.00 0.00 5.52
574 577 3.193691 CAGGTTCTATGTATCCTAGCCGG 59.806 52.174 0.00 0.00 0.00 6.13
575 578 3.163467 GGTTCTATGTATCCTAGCCGGT 58.837 50.000 1.90 0.00 0.00 5.28
576 579 3.577415 GGTTCTATGTATCCTAGCCGGTT 59.423 47.826 1.90 0.00 0.00 4.44
577 580 4.557205 GTTCTATGTATCCTAGCCGGTTG 58.443 47.826 1.90 0.00 0.00 3.77
578 581 4.108501 TCTATGTATCCTAGCCGGTTGA 57.891 45.455 1.90 0.00 0.00 3.18
579 582 4.673968 TCTATGTATCCTAGCCGGTTGAT 58.326 43.478 1.90 0.00 0.00 2.57
580 583 3.685139 ATGTATCCTAGCCGGTTGATG 57.315 47.619 1.90 0.00 0.00 3.07
581 584 1.691976 TGTATCCTAGCCGGTTGATGG 59.308 52.381 1.90 1.63 0.00 3.51
588 591 4.722193 CCGGTTGATGGCTTCACT 57.278 55.556 2.09 0.00 32.84 3.41
589 592 3.853104 CCGGTTGATGGCTTCACTA 57.147 52.632 2.09 0.00 32.84 2.74
590 593 2.107950 CCGGTTGATGGCTTCACTAA 57.892 50.000 2.09 0.00 32.84 2.24
591 594 2.643551 CCGGTTGATGGCTTCACTAAT 58.356 47.619 2.09 0.00 32.84 1.73
592 595 3.016736 CCGGTTGATGGCTTCACTAATT 58.983 45.455 2.09 0.00 32.84 1.40
593 596 3.443681 CCGGTTGATGGCTTCACTAATTT 59.556 43.478 2.09 0.00 32.84 1.82
594 597 4.414852 CGGTTGATGGCTTCACTAATTTG 58.585 43.478 2.09 0.00 32.84 2.32
595 598 4.155826 CGGTTGATGGCTTCACTAATTTGA 59.844 41.667 2.09 0.00 32.84 2.69
596 599 5.335583 CGGTTGATGGCTTCACTAATTTGAA 60.336 40.000 2.09 0.00 32.84 2.69
603 606 4.440839 CTTCACTAATTTGAAGTGGGGC 57.559 45.455 10.51 0.00 45.12 5.80
604 607 3.806949 TCACTAATTTGAAGTGGGGCT 57.193 42.857 6.94 0.00 43.69 5.19
605 608 4.112634 TCACTAATTTGAAGTGGGGCTT 57.887 40.909 6.94 0.00 43.69 4.35
606 609 4.479158 TCACTAATTTGAAGTGGGGCTTT 58.521 39.130 6.94 0.00 43.69 3.51
607 610 5.636123 TCACTAATTTGAAGTGGGGCTTTA 58.364 37.500 6.94 0.00 43.69 1.85
608 611 6.252995 TCACTAATTTGAAGTGGGGCTTTAT 58.747 36.000 6.94 0.00 43.69 1.40
609 612 6.152661 TCACTAATTTGAAGTGGGGCTTTATG 59.847 38.462 6.94 0.00 43.69 1.90
610 613 3.893326 ATTTGAAGTGGGGCTTTATGC 57.107 42.857 0.00 0.00 37.59 3.14
611 614 9.922264 CACTAATTTGAAGTGGGGCTTTATGCC 62.922 44.444 0.00 0.00 46.60 4.40
654 657 9.607988 AAACATCCATATCGTTGACATTAGTTA 57.392 29.630 0.00 0.00 0.00 2.24
693 696 0.801067 CGTCGGCAGTTGGTAGCTAC 60.801 60.000 15.88 15.88 0.00 3.58
696 699 2.361438 GTCGGCAGTTGGTAGCTACTAT 59.639 50.000 22.74 0.42 0.00 2.12
721 724 1.482182 AGTTGATCATGTAGCTGGCGA 59.518 47.619 0.00 0.00 0.00 5.54
722 725 2.103771 AGTTGATCATGTAGCTGGCGAT 59.896 45.455 0.00 0.00 0.00 4.58
723 726 2.159327 TGATCATGTAGCTGGCGATG 57.841 50.000 0.00 0.00 0.00 3.84
724 727 1.688197 TGATCATGTAGCTGGCGATGA 59.312 47.619 0.00 0.00 0.00 2.92
725 728 2.102925 TGATCATGTAGCTGGCGATGAA 59.897 45.455 0.00 0.00 0.00 2.57
726 729 2.689553 TCATGTAGCTGGCGATGAAA 57.310 45.000 0.00 0.00 0.00 2.69
727 730 3.198409 TCATGTAGCTGGCGATGAAAT 57.802 42.857 0.00 0.00 0.00 2.17
728 731 3.133691 TCATGTAGCTGGCGATGAAATC 58.866 45.455 0.00 0.00 40.89 2.17
822 828 0.669318 GGATTGCACGTCGGTTGAGA 60.669 55.000 0.00 0.00 0.00 3.27
930 943 0.455410 TTGCATTGTATTCCAGCGGC 59.545 50.000 0.00 0.00 0.00 6.53
1061 1086 3.121030 CGACCAAGGGCTCAAGCG 61.121 66.667 0.00 0.00 43.26 4.68
1564 1589 2.768527 ACTACCATGCATGCTGTAGAGT 59.231 45.455 32.42 21.70 35.70 3.24
1565 1590 2.034104 ACCATGCATGCTGTAGAGTG 57.966 50.000 21.69 6.71 0.00 3.51
1592 1637 4.088634 ACAAGGAAGAATAGCATTTGCCA 58.911 39.130 0.00 0.00 43.38 4.92
1596 1641 3.442100 GAAGAATAGCATTTGCCAGTGC 58.558 45.455 0.00 0.00 43.38 4.40
1620 1665 0.452987 CCCATTGCACATCGTTCAGG 59.547 55.000 0.00 0.00 0.00 3.86
1629 1674 1.339151 ACATCGTTCAGGAGAAAGGGC 60.339 52.381 0.00 0.00 35.08 5.19
1630 1675 1.065854 CATCGTTCAGGAGAAAGGGCT 60.066 52.381 0.00 0.00 35.08 5.19
1631 1676 0.608640 TCGTTCAGGAGAAAGGGCTC 59.391 55.000 0.00 0.00 35.08 4.70
1632 1677 0.321671 CGTTCAGGAGAAAGGGCTCA 59.678 55.000 0.00 0.00 36.62 4.26
1635 1680 1.270907 TCAGGAGAAAGGGCTCAGTC 58.729 55.000 0.00 0.00 36.62 3.51
1641 1686 3.595173 GAGAAAGGGCTCAGTCTCTTTC 58.405 50.000 11.49 11.49 42.98 2.62
1647 1692 1.754226 GGCTCAGTCTCTTTCCGATCT 59.246 52.381 0.00 0.00 0.00 2.75
1658 1703 0.755079 TTCCGATCTGAGCCCATCTG 59.245 55.000 0.00 0.00 0.00 2.90
1665 1710 2.899339 GAGCCCATCTGCCGCTTC 60.899 66.667 0.00 0.00 31.61 3.86
1669 1714 1.598701 GCCCATCTGCCGCTTCTTTT 61.599 55.000 0.00 0.00 0.00 2.27
1670 1715 0.890683 CCCATCTGCCGCTTCTTTTT 59.109 50.000 0.00 0.00 0.00 1.94
1737 1783 8.608185 TTTTTCTCCATTTCAGCCCTATAATT 57.392 30.769 0.00 0.00 0.00 1.40
1744 1790 9.246670 TCCATTTCAGCCCTATAATTATGATTG 57.753 33.333 8.28 0.74 0.00 2.67
1775 1821 1.812235 TGCGTGAATGTGAGCATCTT 58.188 45.000 0.00 0.00 34.39 2.40
1777 1823 1.733912 GCGTGAATGTGAGCATCTTCA 59.266 47.619 0.00 0.00 33.50 3.02
1823 1870 5.013568 TCATTTTGCTTCATATTGGCTGG 57.986 39.130 0.00 0.00 0.00 4.85
1869 1916 8.849168 TCTATGCACAATAATATGGTTTTCTGG 58.151 33.333 0.00 0.00 0.00 3.86
1895 1942 1.745489 GGCATCTCCAACACCGACC 60.745 63.158 0.00 0.00 34.01 4.79
1898 1945 0.108138 CATCTCCAACACCGACCCTC 60.108 60.000 0.00 0.00 0.00 4.30
1905 1952 0.108019 AACACCGACCCTCAAACCTC 59.892 55.000 0.00 0.00 0.00 3.85
1915 1962 1.079405 TCAAACCTCCGCATCCGTC 60.079 57.895 0.00 0.00 0.00 4.79
1941 1988 1.741401 CAGAAGCCATCCAACGCGA 60.741 57.895 15.93 0.00 0.00 5.87
1942 1989 1.741770 AGAAGCCATCCAACGCGAC 60.742 57.895 15.93 0.00 0.00 5.19
1982 2029 2.572290 CGGCCCGGAAATATTTTCTCT 58.428 47.619 0.73 0.00 0.00 3.10
1983 2030 2.290641 CGGCCCGGAAATATTTTCTCTG 59.709 50.000 0.73 0.00 0.00 3.35
1984 2031 2.623416 GGCCCGGAAATATTTTCTCTGG 59.377 50.000 0.73 4.46 35.66 3.86
1985 2032 2.034685 GCCCGGAAATATTTTCTCTGGC 59.965 50.000 0.73 12.88 34.72 4.85
1986 2033 3.287222 CCCGGAAATATTTTCTCTGGCA 58.713 45.455 0.73 0.00 34.72 4.92
1987 2034 3.699038 CCCGGAAATATTTTCTCTGGCAA 59.301 43.478 0.73 0.00 34.72 4.52
1988 2035 4.159506 CCCGGAAATATTTTCTCTGGCAAA 59.840 41.667 0.73 0.00 34.72 3.68
2002 2049 0.098200 GGCAAACCGGAGATAAACGC 59.902 55.000 9.46 0.00 0.00 4.84
2004 2051 1.073177 CAAACCGGAGATAAACGCGT 58.927 50.000 9.46 5.58 0.00 6.01
2020 2067 1.941812 CGTGAGGCTTTGCGAAAGT 59.058 52.632 9.40 0.00 40.64 2.66
2031 2078 2.879907 CGAAAGTCCGGACCGCTA 59.120 61.111 30.82 0.00 0.00 4.26
2060 2107 1.304052 TTTTGATCACCCTGGCCCG 60.304 57.895 0.00 0.00 0.00 6.13
2080 2127 1.541368 CCAAACCCCTCCTCCCTCA 60.541 63.158 0.00 0.00 0.00 3.86
2155 2202 1.091771 CGCCGCTCCACATTGAAGAT 61.092 55.000 0.00 0.00 0.00 2.40
2168 2215 1.847328 TGAAGATGACTCAGGGCGTA 58.153 50.000 0.00 0.00 0.00 4.42
2170 2217 0.456221 AAGATGACTCAGGGCGTACG 59.544 55.000 11.84 11.84 0.00 3.67
2171 2218 0.680280 AGATGACTCAGGGCGTACGT 60.680 55.000 17.90 0.00 0.00 3.57
2212 2307 0.882484 TCCGCGCTTGTTCAATGTCA 60.882 50.000 5.56 0.00 0.00 3.58
2213 2308 0.453282 CCGCGCTTGTTCAATGTCAG 60.453 55.000 5.56 0.00 0.00 3.51
2214 2309 0.512518 CGCGCTTGTTCAATGTCAGA 59.487 50.000 5.56 0.00 0.00 3.27
2215 2310 1.463034 CGCGCTTGTTCAATGTCAGAG 60.463 52.381 5.56 0.00 0.00 3.35
2216 2311 1.800586 GCGCTTGTTCAATGTCAGAGA 59.199 47.619 0.00 0.00 0.00 3.10
2217 2312 2.412065 GCGCTTGTTCAATGTCAGAGAC 60.412 50.000 0.00 0.00 0.00 3.36
2218 2313 2.159920 CGCTTGTTCAATGTCAGAGACG 60.160 50.000 0.00 0.00 34.95 4.18
2219 2314 2.412065 GCTTGTTCAATGTCAGAGACGC 60.412 50.000 0.00 0.00 34.95 5.19
2220 2315 1.418373 TGTTCAATGTCAGAGACGCG 58.582 50.000 3.53 3.53 34.95 6.01
2221 2316 1.269569 TGTTCAATGTCAGAGACGCGT 60.270 47.619 13.85 13.85 34.95 6.01
2222 2317 1.125021 GTTCAATGTCAGAGACGCGTG 59.875 52.381 20.70 1.02 34.95 5.34
2223 2318 0.596082 TCAATGTCAGAGACGCGTGA 59.404 50.000 20.70 4.28 34.95 4.35
2224 2319 0.710567 CAATGTCAGAGACGCGTGAC 59.289 55.000 20.70 18.81 42.93 3.67
2225 2320 0.598562 AATGTCAGAGACGCGTGACT 59.401 50.000 20.70 13.19 43.03 3.41
2226 2321 0.109551 ATGTCAGAGACGCGTGACTG 60.110 55.000 26.08 26.08 43.03 3.51
2227 2322 1.442857 GTCAGAGACGCGTGACTGG 60.443 63.158 28.98 17.36 40.05 4.00
2228 2323 1.599797 TCAGAGACGCGTGACTGGA 60.600 57.895 28.98 18.74 0.00 3.86
2229 2324 1.442857 CAGAGACGCGTGACTGGAC 60.443 63.158 20.70 0.00 0.00 4.02
2230 2325 2.502080 GAGACGCGTGACTGGACG 60.502 66.667 20.70 0.00 42.42 4.79
2231 2326 3.948086 GAGACGCGTGACTGGACGG 62.948 68.421 20.70 0.00 39.81 4.79
2236 2331 4.129737 CGTGACTGGACGGCGGAT 62.130 66.667 13.24 0.00 35.65 4.18
2237 2332 2.509336 GTGACTGGACGGCGGATG 60.509 66.667 13.24 0.46 0.00 3.51
2238 2333 3.770040 TGACTGGACGGCGGATGG 61.770 66.667 13.24 0.90 0.00 3.51
2239 2334 3.458163 GACTGGACGGCGGATGGA 61.458 66.667 13.24 0.00 0.00 3.41
2240 2335 3.432051 GACTGGACGGCGGATGGAG 62.432 68.421 13.24 1.85 0.00 3.86
2241 2336 4.227134 CTGGACGGCGGATGGAGG 62.227 72.222 13.24 0.00 0.00 4.30
2242 2337 4.770362 TGGACGGCGGATGGAGGA 62.770 66.667 13.24 0.00 0.00 3.71
2243 2338 4.222847 GGACGGCGGATGGAGGAC 62.223 72.222 13.24 0.00 0.00 3.85
2244 2339 3.458163 GACGGCGGATGGAGGACA 61.458 66.667 13.24 0.00 0.00 4.02
2245 2340 3.000819 ACGGCGGATGGAGGACAA 61.001 61.111 13.24 0.00 0.00 3.18
2246 2341 2.511600 CGGCGGATGGAGGACAAC 60.512 66.667 0.00 0.00 0.00 3.32
2247 2342 2.668632 GGCGGATGGAGGACAACA 59.331 61.111 0.00 0.00 0.00 3.33
2248 2343 1.745489 GGCGGATGGAGGACAACAC 60.745 63.158 0.00 0.00 0.00 3.32
2249 2344 2.100631 GCGGATGGAGGACAACACG 61.101 63.158 0.00 0.00 0.00 4.49
2250 2345 1.447838 CGGATGGAGGACAACACGG 60.448 63.158 0.00 0.00 0.00 4.94
2251 2346 1.078426 GGATGGAGGACAACACGGG 60.078 63.158 0.00 0.00 0.00 5.28
2252 2347 1.745489 GATGGAGGACAACACGGGC 60.745 63.158 0.00 0.00 0.00 6.13
2253 2348 2.185310 GATGGAGGACAACACGGGCT 62.185 60.000 0.00 0.00 0.00 5.19
2254 2349 1.779061 ATGGAGGACAACACGGGCTT 61.779 55.000 0.00 0.00 0.00 4.35
2255 2350 1.966451 GGAGGACAACACGGGCTTG 60.966 63.158 0.00 0.00 0.00 4.01
2256 2351 1.966451 GAGGACAACACGGGCTTGG 60.966 63.158 5.25 0.00 0.00 3.61
2257 2352 2.112297 GGACAACACGGGCTTGGA 59.888 61.111 5.25 0.00 0.00 3.53
2258 2353 2.258726 GGACAACACGGGCTTGGAC 61.259 63.158 5.25 0.17 0.00 4.02
2259 2354 1.525077 GACAACACGGGCTTGGACA 60.525 57.895 5.25 0.00 0.00 4.02
2260 2355 1.507141 GACAACACGGGCTTGGACAG 61.507 60.000 5.25 0.00 0.00 3.51
2294 2389 1.271656 CGTAGGATAGGTTTAGGGGCG 59.728 57.143 0.00 0.00 0.00 6.13
2295 2390 2.601905 GTAGGATAGGTTTAGGGGCGA 58.398 52.381 0.00 0.00 0.00 5.54
2296 2391 1.718280 AGGATAGGTTTAGGGGCGAG 58.282 55.000 0.00 0.00 0.00 5.03
2297 2392 1.062352 AGGATAGGTTTAGGGGCGAGT 60.062 52.381 0.00 0.00 0.00 4.18
2298 2393 1.343789 GGATAGGTTTAGGGGCGAGTC 59.656 57.143 0.00 0.00 0.00 3.36
2299 2394 2.317973 GATAGGTTTAGGGGCGAGTCT 58.682 52.381 0.00 0.00 0.00 3.24
2300 2395 2.242882 TAGGTTTAGGGGCGAGTCTT 57.757 50.000 0.00 0.00 0.00 3.01
2301 2396 1.359168 AGGTTTAGGGGCGAGTCTTT 58.641 50.000 0.00 0.00 0.00 2.52
2302 2397 1.703513 AGGTTTAGGGGCGAGTCTTTT 59.296 47.619 0.00 0.00 0.00 2.27
2303 2398 2.107726 AGGTTTAGGGGCGAGTCTTTTT 59.892 45.455 0.00 0.00 0.00 1.94
2338 2433 9.465985 AATGTTTGAAACGTAATAAAAATCCGT 57.534 25.926 2.84 0.00 0.00 4.69
2339 2434 8.853469 TGTTTGAAACGTAATAAAAATCCGTT 57.147 26.923 3.37 0.00 42.86 4.44
2340 2435 8.744011 TGTTTGAAACGTAATAAAAATCCGTTG 58.256 29.630 3.37 0.00 41.09 4.10
2341 2436 8.744923 GTTTGAAACGTAATAAAAATCCGTTGT 58.255 29.630 0.00 0.00 41.09 3.32
2342 2437 7.839438 TGAAACGTAATAAAAATCCGTTGTG 57.161 32.000 0.00 0.00 41.09 3.33
2343 2438 7.416022 TGAAACGTAATAAAAATCCGTTGTGT 58.584 30.769 0.00 0.00 41.09 3.72
2344 2439 7.914346 TGAAACGTAATAAAAATCCGTTGTGTT 59.086 29.630 0.00 0.00 41.09 3.32
2345 2440 8.631676 AAACGTAATAAAAATCCGTTGTGTTT 57.368 26.923 0.00 0.00 41.09 2.83
2346 2441 7.611821 ACGTAATAAAAATCCGTTGTGTTTG 57.388 32.000 0.00 0.00 0.00 2.93
2347 2442 7.194962 ACGTAATAAAAATCCGTTGTGTTTGT 58.805 30.769 0.00 0.00 0.00 2.83
2348 2443 8.341173 ACGTAATAAAAATCCGTTGTGTTTGTA 58.659 29.630 0.00 0.00 0.00 2.41
2349 2444 9.332301 CGTAATAAAAATCCGTTGTGTTTGTAT 57.668 29.630 0.00 0.00 0.00 2.29
2356 2451 8.751302 AAATCCGTTGTGTTTGTATAAAATCC 57.249 30.769 0.00 0.00 0.00 3.01
2357 2452 5.929278 TCCGTTGTGTTTGTATAAAATCCG 58.071 37.500 0.00 0.00 0.00 4.18
2358 2453 5.469421 TCCGTTGTGTTTGTATAAAATCCGT 59.531 36.000 0.00 0.00 0.00 4.69
2359 2454 5.791480 CCGTTGTGTTTGTATAAAATCCGTC 59.209 40.000 0.00 0.00 0.00 4.79
2360 2455 6.364261 CGTTGTGTTTGTATAAAATCCGTCA 58.636 36.000 0.00 0.00 0.00 4.35
2361 2456 7.018826 CGTTGTGTTTGTATAAAATCCGTCAT 58.981 34.615 0.00 0.00 0.00 3.06
2362 2457 7.007009 CGTTGTGTTTGTATAAAATCCGTCATG 59.993 37.037 0.00 0.00 0.00 3.07
2363 2458 7.441890 TGTGTTTGTATAAAATCCGTCATGT 57.558 32.000 0.00 0.00 0.00 3.21
2364 2459 7.877003 TGTGTTTGTATAAAATCCGTCATGTT 58.123 30.769 0.00 0.00 0.00 2.71
2365 2460 9.000486 TGTGTTTGTATAAAATCCGTCATGTTA 58.000 29.630 0.00 0.00 0.00 2.41
2366 2461 9.828852 GTGTTTGTATAAAATCCGTCATGTTAA 57.171 29.630 0.00 0.00 0.00 2.01
2377 2472 7.827819 ATCCGTCATGTTAATATGTAATCCG 57.172 36.000 11.44 7.63 0.00 4.18
2378 2473 6.160684 TCCGTCATGTTAATATGTAATCCGG 58.839 40.000 11.44 14.19 0.00 5.14
2379 2474 5.163893 CCGTCATGTTAATATGTAATCCGGC 60.164 44.000 11.44 0.00 0.00 6.13
2380 2475 5.163893 CGTCATGTTAATATGTAATCCGGCC 60.164 44.000 11.44 0.00 0.00 6.13
2381 2476 4.932799 TCATGTTAATATGTAATCCGGCCG 59.067 41.667 21.04 21.04 0.00 6.13
2382 2477 4.339872 TGTTAATATGTAATCCGGCCGT 57.660 40.909 26.12 8.42 0.00 5.68
2383 2478 4.059511 TGTTAATATGTAATCCGGCCGTG 58.940 43.478 26.12 15.93 0.00 4.94
2384 2479 2.922740 AATATGTAATCCGGCCGTGT 57.077 45.000 26.12 9.32 0.00 4.49
2385 2480 2.922740 ATATGTAATCCGGCCGTGTT 57.077 45.000 26.12 19.88 0.00 3.32
2386 2481 2.695127 TATGTAATCCGGCCGTGTTT 57.305 45.000 26.12 17.76 0.00 2.83
2387 2482 1.091537 ATGTAATCCGGCCGTGTTTG 58.908 50.000 26.12 8.39 0.00 2.93
2388 2483 1.135939 GTAATCCGGCCGTGTTTGC 59.864 57.895 26.12 15.42 0.00 3.68
2389 2484 1.302591 TAATCCGGCCGTGTTTGCA 60.303 52.632 26.12 0.39 0.00 4.08
2390 2485 1.579084 TAATCCGGCCGTGTTTGCAC 61.579 55.000 26.12 0.00 41.97 4.57
2432 2527 6.984740 TGAAAACGAGTTTGAAATGTATGC 57.015 33.333 1.65 0.00 32.36 3.14
2433 2528 5.623264 TGAAAACGAGTTTGAAATGTATGCG 59.377 36.000 1.65 0.00 32.36 4.73
2434 2529 5.351233 AAACGAGTTTGAAATGTATGCGA 57.649 34.783 0.00 0.00 0.00 5.10
2435 2530 4.322101 ACGAGTTTGAAATGTATGCGAC 57.678 40.909 0.00 0.00 0.00 5.19
2436 2531 3.994392 ACGAGTTTGAAATGTATGCGACT 59.006 39.130 0.00 0.00 0.00 4.18
2437 2532 5.165676 ACGAGTTTGAAATGTATGCGACTA 58.834 37.500 0.00 0.00 0.00 2.59
2438 2533 5.810587 ACGAGTTTGAAATGTATGCGACTAT 59.189 36.000 0.00 0.00 0.00 2.12
2439 2534 6.122782 CGAGTTTGAAATGTATGCGACTATG 58.877 40.000 0.00 0.00 0.00 2.23
2440 2535 6.363577 AGTTTGAAATGTATGCGACTATGG 57.636 37.500 0.00 0.00 0.00 2.74
2441 2536 5.880332 AGTTTGAAATGTATGCGACTATGGT 59.120 36.000 0.00 0.00 0.00 3.55
2442 2537 6.374333 AGTTTGAAATGTATGCGACTATGGTT 59.626 34.615 0.00 0.00 0.00 3.67
2443 2538 5.733226 TGAAATGTATGCGACTATGGTTG 57.267 39.130 0.00 0.00 0.00 3.77
2444 2539 4.574421 TGAAATGTATGCGACTATGGTTGG 59.426 41.667 0.00 0.00 0.00 3.77
2445 2540 4.415881 AATGTATGCGACTATGGTTGGA 57.584 40.909 0.00 0.00 0.00 3.53
2446 2541 4.623932 ATGTATGCGACTATGGTTGGAT 57.376 40.909 8.50 8.50 40.32 3.41
2447 2542 4.415881 TGTATGCGACTATGGTTGGATT 57.584 40.909 8.75 0.00 38.55 3.01
2448 2543 4.126437 TGTATGCGACTATGGTTGGATTG 58.874 43.478 8.75 0.00 38.55 2.67
2449 2544 1.378531 TGCGACTATGGTTGGATTGC 58.621 50.000 0.00 0.00 0.00 3.56
2450 2545 0.304705 GCGACTATGGTTGGATTGCG 59.695 55.000 0.00 0.00 0.00 4.85
2451 2546 0.937304 CGACTATGGTTGGATTGCGG 59.063 55.000 0.00 0.00 0.00 5.69
2452 2547 0.663153 GACTATGGTTGGATTGCGGC 59.337 55.000 0.00 0.00 0.00 6.53
2453 2548 1.095228 ACTATGGTTGGATTGCGGCG 61.095 55.000 0.51 0.51 0.00 6.46
2454 2549 1.078072 TATGGTTGGATTGCGGCGT 60.078 52.632 9.37 0.00 0.00 5.68
2455 2550 1.092921 TATGGTTGGATTGCGGCGTC 61.093 55.000 9.37 0.91 0.00 5.19
2456 2551 3.810896 GGTTGGATTGCGGCGTCC 61.811 66.667 9.37 15.05 35.02 4.79
2457 2552 3.810896 GTTGGATTGCGGCGTCCC 61.811 66.667 18.03 9.03 33.45 4.46
2489 2584 3.732938 GGAGTGCCTCCCAGATGT 58.267 61.111 9.46 0.00 44.36 3.06
2490 2585 2.916355 GGAGTGCCTCCCAGATGTA 58.084 57.895 9.46 0.00 44.36 2.29
2491 2586 1.428869 GGAGTGCCTCCCAGATGTAT 58.571 55.000 9.46 0.00 44.36 2.29
2492 2587 2.609747 GGAGTGCCTCCCAGATGTATA 58.390 52.381 9.46 0.00 44.36 1.47
2493 2588 2.300437 GGAGTGCCTCCCAGATGTATAC 59.700 54.545 9.46 0.00 44.36 1.47
2494 2589 3.235200 GAGTGCCTCCCAGATGTATACT 58.765 50.000 4.17 0.00 0.00 2.12
2495 2590 4.408276 GAGTGCCTCCCAGATGTATACTA 58.592 47.826 4.17 0.00 0.00 1.82
2496 2591 4.153411 AGTGCCTCCCAGATGTATACTAC 58.847 47.826 4.17 0.00 0.00 2.73
2497 2592 3.057456 GTGCCTCCCAGATGTATACTACG 60.057 52.174 4.17 0.00 0.00 3.51
2498 2593 3.155501 GCCTCCCAGATGTATACTACGT 58.844 50.000 4.17 0.00 0.00 3.57
2499 2594 4.202493 TGCCTCCCAGATGTATACTACGTA 60.202 45.833 4.17 0.00 0.00 3.57
2500 2595 4.763793 GCCTCCCAGATGTATACTACGTAA 59.236 45.833 4.17 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.229792 GCACAGTTTGGATGTCTTGGA 58.770 47.619 0.00 0.00 0.00 3.53
479 482 2.267961 GTCACCGCCGGAATCCTT 59.732 61.111 11.71 0.00 0.00 3.36
539 542 6.769512 ACATAGAACCTGATTACAGTGTGTT 58.230 36.000 5.88 0.00 42.05 3.32
540 543 6.360370 ACATAGAACCTGATTACAGTGTGT 57.640 37.500 5.88 0.00 42.05 3.72
541 544 7.653713 GGATACATAGAACCTGATTACAGTGTG 59.346 40.741 5.88 0.00 42.05 3.82
542 545 7.565398 AGGATACATAGAACCTGATTACAGTGT 59.435 37.037 0.00 0.00 40.13 3.55
543 546 7.957002 AGGATACATAGAACCTGATTACAGTG 58.043 38.462 0.00 0.00 40.13 3.66
544 547 9.303116 CTAGGATACATAGAACCTGATTACAGT 57.697 37.037 0.00 0.00 40.13 3.55
545 548 8.247562 GCTAGGATACATAGAACCTGATTACAG 58.752 40.741 0.00 0.00 40.97 2.74
546 549 7.178628 GGCTAGGATACATAGAACCTGATTACA 59.821 40.741 0.00 0.00 41.41 2.41
547 550 7.548967 GGCTAGGATACATAGAACCTGATTAC 58.451 42.308 0.00 0.00 41.41 1.89
548 551 6.377429 CGGCTAGGATACATAGAACCTGATTA 59.623 42.308 0.00 0.00 41.41 1.75
549 552 5.186021 CGGCTAGGATACATAGAACCTGATT 59.814 44.000 0.00 0.00 41.41 2.57
550 553 4.707448 CGGCTAGGATACATAGAACCTGAT 59.293 45.833 0.00 0.00 41.41 2.90
551 554 4.079970 CGGCTAGGATACATAGAACCTGA 58.920 47.826 0.00 0.00 41.41 3.86
552 555 3.193691 CCGGCTAGGATACATAGAACCTG 59.806 52.174 0.00 0.00 45.00 4.00
553 556 3.181420 ACCGGCTAGGATACATAGAACCT 60.181 47.826 0.00 0.00 45.00 3.50
554 557 3.163467 ACCGGCTAGGATACATAGAACC 58.837 50.000 0.00 0.00 45.00 3.62
555 558 4.280174 TCAACCGGCTAGGATACATAGAAC 59.720 45.833 0.00 0.00 45.00 3.01
556 559 4.476297 TCAACCGGCTAGGATACATAGAA 58.524 43.478 0.00 0.00 45.00 2.10
557 560 4.108501 TCAACCGGCTAGGATACATAGA 57.891 45.455 0.00 0.00 45.00 1.98
558 561 4.382040 CCATCAACCGGCTAGGATACATAG 60.382 50.000 0.00 0.00 45.00 2.23
559 562 3.513912 CCATCAACCGGCTAGGATACATA 59.486 47.826 0.00 0.00 45.00 2.29
560 563 2.303022 CCATCAACCGGCTAGGATACAT 59.697 50.000 0.00 0.00 45.00 2.29
561 564 1.691976 CCATCAACCGGCTAGGATACA 59.308 52.381 0.00 0.00 45.00 2.29
562 565 1.608283 GCCATCAACCGGCTAGGATAC 60.608 57.143 0.00 0.00 46.56 2.24
563 566 0.685097 GCCATCAACCGGCTAGGATA 59.315 55.000 0.00 0.00 46.56 2.59
564 567 1.451936 GCCATCAACCGGCTAGGAT 59.548 57.895 0.00 0.00 46.56 3.24
565 568 2.908015 GCCATCAACCGGCTAGGA 59.092 61.111 0.00 0.00 46.56 2.94
571 574 2.107950 TTAGTGAAGCCATCAACCGG 57.892 50.000 0.00 0.00 40.50 5.28
572 575 4.155826 TCAAATTAGTGAAGCCATCAACCG 59.844 41.667 0.00 0.00 40.50 4.44
573 576 5.643379 TCAAATTAGTGAAGCCATCAACC 57.357 39.130 0.00 0.00 40.50 3.77
583 586 4.112634 AGCCCCACTTCAAATTAGTGAA 57.887 40.909 8.18 1.01 44.52 3.18
584 587 3.806949 AGCCCCACTTCAAATTAGTGA 57.193 42.857 8.18 0.00 44.52 3.41
585 588 4.871933 AAAGCCCCACTTCAAATTAGTG 57.128 40.909 0.58 0.58 42.06 2.74
586 589 5.105351 GCATAAAGCCCCACTTCAAATTAGT 60.105 40.000 0.00 0.00 37.75 2.24
587 590 5.351458 GCATAAAGCCCCACTTCAAATTAG 58.649 41.667 0.00 0.00 37.75 1.73
588 591 5.337578 GCATAAAGCCCCACTTCAAATTA 57.662 39.130 0.00 0.00 37.75 1.40
589 592 4.206477 GCATAAAGCCCCACTTCAAATT 57.794 40.909 0.00 0.00 37.75 1.82
590 593 3.893326 GCATAAAGCCCCACTTCAAAT 57.107 42.857 0.00 0.00 37.75 2.32
626 629 8.956426 ACTAATGTCAACGATATGGATGTTTTT 58.044 29.630 0.00 0.00 0.00 1.94
627 630 8.506168 ACTAATGTCAACGATATGGATGTTTT 57.494 30.769 0.00 0.00 0.00 2.43
628 631 8.506168 AACTAATGTCAACGATATGGATGTTT 57.494 30.769 0.00 0.00 0.00 2.83
629 632 9.261180 CTAACTAATGTCAACGATATGGATGTT 57.739 33.333 0.00 0.00 0.00 2.71
651 654 1.090052 CCGCTAGTTGGGCTGCTAAC 61.090 60.000 0.00 5.94 0.00 2.34
654 657 4.101448 CCCGCTAGTTGGGCTGCT 62.101 66.667 8.98 0.00 40.47 4.24
672 675 3.179265 CTACCAACTGCCGACGCG 61.179 66.667 3.53 3.53 38.08 6.01
674 677 0.801067 GTAGCTACCAACTGCCGACG 60.801 60.000 13.20 0.00 0.00 5.12
675 678 0.531200 AGTAGCTACCAACTGCCGAC 59.469 55.000 20.31 0.00 0.00 4.79
693 696 8.877779 GCCAGCTACATGATCAACTATTAATAG 58.122 37.037 18.99 18.99 36.46 1.73
696 699 5.696270 CGCCAGCTACATGATCAACTATTAA 59.304 40.000 0.00 0.00 0.00 1.40
724 727 9.485206 CCAAATTCTCTGTCTTTTTCATGATTT 57.515 29.630 0.00 0.00 0.00 2.17
725 728 8.645110 ACCAAATTCTCTGTCTTTTTCATGATT 58.355 29.630 0.00 0.00 0.00 2.57
726 729 8.186709 ACCAAATTCTCTGTCTTTTTCATGAT 57.813 30.769 0.00 0.00 0.00 2.45
727 730 7.587037 ACCAAATTCTCTGTCTTTTTCATGA 57.413 32.000 0.00 0.00 0.00 3.07
728 731 8.139989 AGAACCAAATTCTCTGTCTTTTTCATG 58.860 33.333 0.00 0.00 44.99 3.07
786 792 0.889638 TCCCCTATGTAGCTCTCGCG 60.890 60.000 0.00 0.00 42.32 5.87
822 828 1.667191 GCATGATCGATCGGCAGCT 60.667 57.895 27.25 5.98 32.22 4.24
930 943 2.407616 TGCGGTATCGACTCGCAG 59.592 61.111 21.86 1.40 44.68 5.18
1061 1086 0.734889 GTGCATGTACAGGTGGATGC 59.265 55.000 9.26 9.49 41.34 3.91
1156 1181 3.414700 GTCAAGCACGCCGACCAG 61.415 66.667 0.00 0.00 0.00 4.00
1546 1571 1.280133 ACACTCTACAGCATGCATGGT 59.720 47.619 25.20 25.20 42.53 3.55
1549 1574 3.063510 ACAACACTCTACAGCATGCAT 57.936 42.857 21.98 10.24 42.53 3.96
1550 1575 2.549064 ACAACACTCTACAGCATGCA 57.451 45.000 21.98 0.00 42.53 3.96
1551 1576 3.325870 TGTACAACACTCTACAGCATGC 58.674 45.455 10.51 10.51 42.53 4.06
1564 1589 7.592938 CAAATGCTATTCTTCCTTGTACAACA 58.407 34.615 3.59 0.00 0.00 3.33
1565 1590 6.528072 GCAAATGCTATTCTTCCTTGTACAAC 59.472 38.462 3.59 0.00 38.21 3.32
1596 1641 2.103538 GATGTGCAATGGGCTGCG 59.896 61.111 0.00 0.00 45.74 5.18
1611 1656 1.208293 GAGCCCTTTCTCCTGAACGAT 59.792 52.381 0.00 0.00 31.02 3.73
1620 1665 3.595173 GAAAGAGACTGAGCCCTTTCTC 58.405 50.000 11.83 2.79 40.53 2.87
1629 1674 4.291540 CTCAGATCGGAAAGAGACTGAG 57.708 50.000 0.00 0.00 46.63 3.35
1630 1675 2.425312 GCTCAGATCGGAAAGAGACTGA 59.575 50.000 0.00 0.00 40.85 3.41
1631 1676 2.481104 GGCTCAGATCGGAAAGAGACTG 60.481 54.545 0.00 0.00 38.02 3.51
1632 1677 1.754226 GGCTCAGATCGGAAAGAGACT 59.246 52.381 0.00 0.00 33.34 3.24
1635 1680 0.826715 TGGGCTCAGATCGGAAAGAG 59.173 55.000 0.00 0.00 0.00 2.85
1641 1686 1.301558 GCAGATGGGCTCAGATCGG 60.302 63.158 0.00 0.00 0.00 4.18
1647 1692 3.687321 GAAGCGGCAGATGGGCTCA 62.687 63.158 1.45 0.00 40.61 4.26
1735 1781 8.807581 CACGCATATACACGATACAATCATAAT 58.192 33.333 3.43 0.00 0.00 1.28
1737 1783 7.531716 TCACGCATATACACGATACAATCATA 58.468 34.615 3.43 0.00 0.00 2.15
1744 1790 5.627780 TCACATTCACGCATATACACGATAC 59.372 40.000 3.43 0.00 0.00 2.24
1807 1854 2.530460 AACCCAGCCAATATGAAGCA 57.470 45.000 0.00 0.00 0.00 3.91
1849 1896 7.645058 AGTCCCAGAAAACCATATTATTGTG 57.355 36.000 0.00 0.00 0.00 3.33
1858 1905 2.291605 GCCCTAAGTCCCAGAAAACCAT 60.292 50.000 0.00 0.00 0.00 3.55
1865 1912 1.692762 GGAGATGCCCTAAGTCCCAGA 60.693 57.143 0.00 0.00 0.00 3.86
1866 1913 0.761802 GGAGATGCCCTAAGTCCCAG 59.238 60.000 0.00 0.00 0.00 4.45
1869 1916 1.559682 TGTTGGAGATGCCCTAAGTCC 59.440 52.381 0.00 0.00 34.97 3.85
1895 1942 1.815421 CGGATGCGGAGGTTTGAGG 60.815 63.158 0.00 0.00 0.00 3.86
1898 1945 2.106683 GGACGGATGCGGAGGTTTG 61.107 63.158 12.44 0.00 0.00 2.93
1905 1952 4.873129 CGGTCTGGACGGATGCGG 62.873 72.222 12.44 0.00 34.05 5.69
1915 1962 1.817099 GATGGCTTCTGCGGTCTGG 60.817 63.158 0.00 0.00 40.82 3.86
1941 1988 1.379443 TCGTGGAGCGATACAGGGT 60.379 57.895 5.65 0.00 45.68 4.34
1942 1989 3.521605 TCGTGGAGCGATACAGGG 58.478 61.111 5.65 0.00 45.68 4.45
1965 2012 3.287222 TGCCAGAGAAAATATTTCCGGG 58.713 45.455 0.00 5.75 0.00 5.73
1971 2018 4.340617 TCCGGTTTGCCAGAGAAAATATT 58.659 39.130 0.00 0.00 34.09 1.28
1972 2019 3.947834 CTCCGGTTTGCCAGAGAAAATAT 59.052 43.478 0.00 0.00 40.87 1.28
1982 2029 1.444836 CGTTTATCTCCGGTTTGCCA 58.555 50.000 0.00 0.00 34.09 4.92
1983 2030 0.098200 GCGTTTATCTCCGGTTTGCC 59.902 55.000 0.00 0.00 0.00 4.52
1984 2031 0.247537 CGCGTTTATCTCCGGTTTGC 60.248 55.000 0.00 0.00 0.00 3.68
1985 2032 1.073177 ACGCGTTTATCTCCGGTTTG 58.927 50.000 5.58 0.00 0.00 2.93
1986 2033 1.073177 CACGCGTTTATCTCCGGTTT 58.927 50.000 10.22 0.00 0.00 3.27
1987 2034 0.244450 TCACGCGTTTATCTCCGGTT 59.756 50.000 10.22 0.00 0.00 4.44
1988 2035 0.179145 CTCACGCGTTTATCTCCGGT 60.179 55.000 10.22 0.00 0.00 5.28
2002 2049 0.110644 GACTTTCGCAAAGCCTCACG 60.111 55.000 8.09 0.00 42.27 4.35
2004 2051 1.227999 CGGACTTTCGCAAAGCCTCA 61.228 55.000 8.09 0.00 42.27 3.86
2016 2063 1.909781 TGGTAGCGGTCCGGACTTT 60.910 57.895 32.52 20.17 0.00 2.66
2031 2078 2.282180 ATCAAAAGCGGGCGTGGT 60.282 55.556 0.00 0.00 0.00 4.16
2043 2090 2.354729 CGGGCCAGGGTGATCAAA 59.645 61.111 4.39 0.00 0.00 2.69
2044 2091 4.424711 GCGGGCCAGGGTGATCAA 62.425 66.667 4.39 0.00 0.00 2.57
2060 2107 4.062032 GGGAGGAGGGGTTTGGGC 62.062 72.222 0.00 0.00 0.00 5.36
2070 2117 3.775654 GTGCGGGTGAGGGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
2115 2162 0.585357 GCTCTACAGCGGCATGAATG 59.415 55.000 1.45 0.00 35.39 2.67
2155 2202 2.632544 CCACGTACGCCCTGAGTCA 61.633 63.158 16.72 0.00 0.00 3.41
2168 2215 3.681835 GACGGTGAGAGGCCACGT 61.682 66.667 5.01 5.35 37.91 4.49
2170 2217 2.574399 GAGACGGTGAGAGGCCAC 59.426 66.667 5.01 0.00 36.37 5.01
2171 2218 2.680352 GGAGACGGTGAGAGGCCA 60.680 66.667 5.01 0.00 0.00 5.36
2212 2307 2.955402 GTCCAGTCACGCGTCTCT 59.045 61.111 9.86 7.97 0.00 3.10
2213 2308 2.502080 CGTCCAGTCACGCGTCTC 60.502 66.667 9.86 5.27 31.96 3.36
2214 2309 4.039357 CCGTCCAGTCACGCGTCT 62.039 66.667 9.86 0.22 38.52 4.18
2219 2314 4.129737 ATCCGCCGTCCAGTCACG 62.130 66.667 0.00 0.00 39.61 4.35
2220 2315 2.509336 CATCCGCCGTCCAGTCAC 60.509 66.667 0.00 0.00 0.00 3.67
2221 2316 3.770040 CCATCCGCCGTCCAGTCA 61.770 66.667 0.00 0.00 0.00 3.41
2222 2317 3.432051 CTCCATCCGCCGTCCAGTC 62.432 68.421 0.00 0.00 0.00 3.51
2223 2318 3.461773 CTCCATCCGCCGTCCAGT 61.462 66.667 0.00 0.00 0.00 4.00
2224 2319 4.227134 CCTCCATCCGCCGTCCAG 62.227 72.222 0.00 0.00 0.00 3.86
2225 2320 4.770362 TCCTCCATCCGCCGTCCA 62.770 66.667 0.00 0.00 0.00 4.02
2226 2321 4.222847 GTCCTCCATCCGCCGTCC 62.223 72.222 0.00 0.00 0.00 4.79
2227 2322 3.014085 TTGTCCTCCATCCGCCGTC 62.014 63.158 0.00 0.00 0.00 4.79
2228 2323 3.000819 TTGTCCTCCATCCGCCGT 61.001 61.111 0.00 0.00 0.00 5.68
2229 2324 2.511600 GTTGTCCTCCATCCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
2230 2325 1.745489 GTGTTGTCCTCCATCCGCC 60.745 63.158 0.00 0.00 0.00 6.13
2231 2326 2.100631 CGTGTTGTCCTCCATCCGC 61.101 63.158 0.00 0.00 0.00 5.54
2232 2327 1.447838 CCGTGTTGTCCTCCATCCG 60.448 63.158 0.00 0.00 0.00 4.18
2233 2328 1.078426 CCCGTGTTGTCCTCCATCC 60.078 63.158 0.00 0.00 0.00 3.51
2234 2329 1.745489 GCCCGTGTTGTCCTCCATC 60.745 63.158 0.00 0.00 0.00 3.51
2235 2330 1.779061 AAGCCCGTGTTGTCCTCCAT 61.779 55.000 0.00 0.00 0.00 3.41
2236 2331 2.448582 AAGCCCGTGTTGTCCTCCA 61.449 57.895 0.00 0.00 0.00 3.86
2237 2332 1.966451 CAAGCCCGTGTTGTCCTCC 60.966 63.158 0.00 0.00 0.00 4.30
2238 2333 1.966451 CCAAGCCCGTGTTGTCCTC 60.966 63.158 0.00 0.00 0.00 3.71
2239 2334 2.113139 CCAAGCCCGTGTTGTCCT 59.887 61.111 0.00 0.00 0.00 3.85
2240 2335 2.112297 TCCAAGCCCGTGTTGTCC 59.888 61.111 0.00 0.00 0.00 4.02
2241 2336 1.507141 CTGTCCAAGCCCGTGTTGTC 61.507 60.000 0.00 0.00 0.00 3.18
2242 2337 1.525995 CTGTCCAAGCCCGTGTTGT 60.526 57.895 0.00 0.00 0.00 3.32
2243 2338 3.343972 CTGTCCAAGCCCGTGTTG 58.656 61.111 0.00 0.00 0.00 3.33
2266 2361 2.049063 CTATCCTACGGCAGCGGC 60.049 66.667 0.00 0.00 40.13 6.53
2267 2362 1.745320 AACCTATCCTACGGCAGCGG 61.745 60.000 0.00 0.00 0.00 5.52
2268 2363 0.104304 AAACCTATCCTACGGCAGCG 59.896 55.000 0.00 0.00 0.00 5.18
2269 2364 2.288886 CCTAAACCTATCCTACGGCAGC 60.289 54.545 0.00 0.00 0.00 5.25
2270 2365 2.299297 CCCTAAACCTATCCTACGGCAG 59.701 54.545 0.00 0.00 0.00 4.85
2271 2366 2.322658 CCCTAAACCTATCCTACGGCA 58.677 52.381 0.00 0.00 0.00 5.69
2272 2367 1.622312 CCCCTAAACCTATCCTACGGC 59.378 57.143 0.00 0.00 0.00 5.68
2273 2368 1.622312 GCCCCTAAACCTATCCTACGG 59.378 57.143 0.00 0.00 0.00 4.02
2274 2369 1.271656 CGCCCCTAAACCTATCCTACG 59.728 57.143 0.00 0.00 0.00 3.51
2275 2370 2.561858 CTCGCCCCTAAACCTATCCTAC 59.438 54.545 0.00 0.00 0.00 3.18
2276 2371 2.178544 ACTCGCCCCTAAACCTATCCTA 59.821 50.000 0.00 0.00 0.00 2.94
2277 2372 1.062352 ACTCGCCCCTAAACCTATCCT 60.062 52.381 0.00 0.00 0.00 3.24
2278 2373 1.343789 GACTCGCCCCTAAACCTATCC 59.656 57.143 0.00 0.00 0.00 2.59
2279 2374 2.317973 AGACTCGCCCCTAAACCTATC 58.682 52.381 0.00 0.00 0.00 2.08
2280 2375 2.473576 AGACTCGCCCCTAAACCTAT 57.526 50.000 0.00 0.00 0.00 2.57
2281 2376 2.242882 AAGACTCGCCCCTAAACCTA 57.757 50.000 0.00 0.00 0.00 3.08
2282 2377 1.359168 AAAGACTCGCCCCTAAACCT 58.641 50.000 0.00 0.00 0.00 3.50
2283 2378 2.195741 AAAAGACTCGCCCCTAAACC 57.804 50.000 0.00 0.00 0.00 3.27
2312 2407 9.465985 ACGGATTTTTATTACGTTTCAAACATT 57.534 25.926 0.22 0.00 33.54 2.71
2313 2408 9.465985 AACGGATTTTTATTACGTTTCAAACAT 57.534 25.926 0.22 0.00 44.21 2.71
2314 2409 8.744011 CAACGGATTTTTATTACGTTTCAAACA 58.256 29.630 0.22 0.00 44.21 2.83
2315 2410 8.744923 ACAACGGATTTTTATTACGTTTCAAAC 58.255 29.630 0.00 0.00 44.21 2.93
2316 2411 8.744011 CACAACGGATTTTTATTACGTTTCAAA 58.256 29.630 0.00 0.00 44.21 2.69
2317 2412 7.914346 ACACAACGGATTTTTATTACGTTTCAA 59.086 29.630 0.00 0.00 44.21 2.69
2318 2413 7.416022 ACACAACGGATTTTTATTACGTTTCA 58.584 30.769 0.00 0.00 44.21 2.69
2319 2414 7.840981 ACACAACGGATTTTTATTACGTTTC 57.159 32.000 0.00 0.00 44.21 2.78
2320 2415 8.533153 CAAACACAACGGATTTTTATTACGTTT 58.467 29.630 0.00 0.00 44.21 3.60
2322 2417 7.194962 ACAAACACAACGGATTTTTATTACGT 58.805 30.769 0.00 0.00 39.74 3.57
2323 2418 7.611821 ACAAACACAACGGATTTTTATTACG 57.388 32.000 0.00 0.00 0.00 3.18
2330 2425 9.198837 GGATTTTATACAAACACAACGGATTTT 57.801 29.630 0.00 0.00 0.00 1.82
2331 2426 7.539366 CGGATTTTATACAAACACAACGGATTT 59.461 33.333 0.00 0.00 0.00 2.17
2332 2427 7.024768 CGGATTTTATACAAACACAACGGATT 58.975 34.615 0.00 0.00 0.00 3.01
2333 2428 6.149807 ACGGATTTTATACAAACACAACGGAT 59.850 34.615 0.00 0.00 0.00 4.18
2334 2429 5.469421 ACGGATTTTATACAAACACAACGGA 59.531 36.000 0.00 0.00 0.00 4.69
2335 2430 5.691815 ACGGATTTTATACAAACACAACGG 58.308 37.500 0.00 0.00 0.00 4.44
2336 2431 6.364261 TGACGGATTTTATACAAACACAACG 58.636 36.000 0.00 0.00 0.00 4.10
2337 2432 7.806014 ACATGACGGATTTTATACAAACACAAC 59.194 33.333 0.00 0.00 0.00 3.32
2338 2433 7.877003 ACATGACGGATTTTATACAAACACAA 58.123 30.769 0.00 0.00 0.00 3.33
2339 2434 7.441890 ACATGACGGATTTTATACAAACACA 57.558 32.000 0.00 0.00 0.00 3.72
2340 2435 9.828852 TTAACATGACGGATTTTATACAAACAC 57.171 29.630 0.00 0.00 0.00 3.32
2351 2446 8.717821 CGGATTACATATTAACATGACGGATTT 58.282 33.333 0.00 0.00 0.00 2.17
2352 2447 7.333423 CCGGATTACATATTAACATGACGGATT 59.667 37.037 0.00 0.00 0.00 3.01
2353 2448 6.816640 CCGGATTACATATTAACATGACGGAT 59.183 38.462 0.00 0.00 0.00 4.18
2354 2449 6.160684 CCGGATTACATATTAACATGACGGA 58.839 40.000 0.00 0.00 0.00 4.69
2355 2450 5.163893 GCCGGATTACATATTAACATGACGG 60.164 44.000 5.05 7.31 0.00 4.79
2356 2451 5.163893 GGCCGGATTACATATTAACATGACG 60.164 44.000 5.05 0.00 0.00 4.35
2357 2452 5.163893 CGGCCGGATTACATATTAACATGAC 60.164 44.000 20.10 0.00 0.00 3.06
2358 2453 4.932799 CGGCCGGATTACATATTAACATGA 59.067 41.667 20.10 0.00 0.00 3.07
2359 2454 4.693566 ACGGCCGGATTACATATTAACATG 59.306 41.667 31.76 0.00 0.00 3.21
2360 2455 4.693566 CACGGCCGGATTACATATTAACAT 59.306 41.667 31.76 0.00 0.00 2.71
2361 2456 4.059511 CACGGCCGGATTACATATTAACA 58.940 43.478 31.76 0.00 0.00 2.41
2362 2457 4.060205 ACACGGCCGGATTACATATTAAC 58.940 43.478 31.76 0.00 0.00 2.01
2363 2458 4.339872 ACACGGCCGGATTACATATTAA 57.660 40.909 31.76 0.00 0.00 1.40
2364 2459 4.339872 AACACGGCCGGATTACATATTA 57.660 40.909 31.76 0.00 0.00 0.98
2365 2460 2.922740 ACACGGCCGGATTACATATT 57.077 45.000 31.76 0.00 0.00 1.28
2366 2461 2.875933 CAAACACGGCCGGATTACATAT 59.124 45.455 31.76 0.57 0.00 1.78
2367 2462 2.281517 CAAACACGGCCGGATTACATA 58.718 47.619 31.76 0.00 0.00 2.29
2368 2463 1.091537 CAAACACGGCCGGATTACAT 58.908 50.000 31.76 2.42 0.00 2.29
2369 2464 1.579084 GCAAACACGGCCGGATTACA 61.579 55.000 31.76 0.00 0.00 2.41
2370 2465 1.135939 GCAAACACGGCCGGATTAC 59.864 57.895 31.76 14.42 0.00 1.89
2371 2466 1.302591 TGCAAACACGGCCGGATTA 60.303 52.632 31.76 5.28 0.00 1.75
2372 2467 2.596046 TGCAAACACGGCCGGATT 60.596 55.556 31.76 20.24 0.00 3.01
2373 2468 3.361977 GTGCAAACACGGCCGGAT 61.362 61.111 31.76 14.64 36.98 4.18
2392 2487 6.531948 TCGTTTTCAACAAACCGAATGAAATT 59.468 30.769 0.00 0.00 40.36 1.82
2393 2488 6.037098 TCGTTTTCAACAAACCGAATGAAAT 58.963 32.000 0.00 0.00 40.36 2.17
2394 2489 5.399858 TCGTTTTCAACAAACCGAATGAAA 58.600 33.333 0.00 0.00 39.33 2.69
2395 2490 4.982999 TCGTTTTCAACAAACCGAATGAA 58.017 34.783 0.00 0.00 0.00 2.57
2396 2491 4.095185 ACTCGTTTTCAACAAACCGAATGA 59.905 37.500 0.00 0.00 0.00 2.57
2397 2492 4.347813 ACTCGTTTTCAACAAACCGAATG 58.652 39.130 0.00 0.00 0.00 2.67
2398 2493 4.625972 ACTCGTTTTCAACAAACCGAAT 57.374 36.364 0.00 0.00 0.00 3.34
2399 2494 4.422546 AACTCGTTTTCAACAAACCGAA 57.577 36.364 0.00 0.00 0.00 4.30
2400 2495 4.083431 TCAAACTCGTTTTCAACAAACCGA 60.083 37.500 0.00 0.00 0.00 4.69
2401 2496 4.159857 TCAAACTCGTTTTCAACAAACCG 58.840 39.130 0.00 0.00 0.00 4.44
2402 2497 6.455045 TTTCAAACTCGTTTTCAACAAACC 57.545 33.333 0.00 0.00 0.00 3.27
2403 2498 7.506474 ACATTTCAAACTCGTTTTCAACAAAC 58.494 30.769 0.00 0.00 0.00 2.93
2404 2499 7.644986 ACATTTCAAACTCGTTTTCAACAAA 57.355 28.000 0.00 0.00 0.00 2.83
2405 2500 8.802856 CATACATTTCAAACTCGTTTTCAACAA 58.197 29.630 0.00 0.00 0.00 2.83
2406 2501 7.043722 GCATACATTTCAAACTCGTTTTCAACA 60.044 33.333 0.00 0.00 0.00 3.33
2407 2502 7.273659 GCATACATTTCAAACTCGTTTTCAAC 58.726 34.615 0.00 0.00 0.00 3.18
2408 2503 6.141527 CGCATACATTTCAAACTCGTTTTCAA 59.858 34.615 0.00 0.00 0.00 2.69
2409 2504 5.623264 CGCATACATTTCAAACTCGTTTTCA 59.377 36.000 0.00 0.00 0.00 2.69
2410 2505 5.849081 TCGCATACATTTCAAACTCGTTTTC 59.151 36.000 0.00 0.00 0.00 2.29
2411 2506 5.623673 GTCGCATACATTTCAAACTCGTTTT 59.376 36.000 0.00 0.00 0.00 2.43
2412 2507 5.049680 AGTCGCATACATTTCAAACTCGTTT 60.050 36.000 0.00 0.00 0.00 3.60
2413 2508 4.451096 AGTCGCATACATTTCAAACTCGTT 59.549 37.500 0.00 0.00 0.00 3.85
2414 2509 3.994392 AGTCGCATACATTTCAAACTCGT 59.006 39.130 0.00 0.00 0.00 4.18
2415 2510 4.584029 AGTCGCATACATTTCAAACTCG 57.416 40.909 0.00 0.00 0.00 4.18
2416 2511 6.037172 ACCATAGTCGCATACATTTCAAACTC 59.963 38.462 0.00 0.00 0.00 3.01
2417 2512 5.880332 ACCATAGTCGCATACATTTCAAACT 59.120 36.000 0.00 0.00 0.00 2.66
2418 2513 6.119144 ACCATAGTCGCATACATTTCAAAC 57.881 37.500 0.00 0.00 0.00 2.93
2419 2514 6.404184 CCAACCATAGTCGCATACATTTCAAA 60.404 38.462 0.00 0.00 0.00 2.69
2420 2515 5.065859 CCAACCATAGTCGCATACATTTCAA 59.934 40.000 0.00 0.00 0.00 2.69
2421 2516 4.574421 CCAACCATAGTCGCATACATTTCA 59.426 41.667 0.00 0.00 0.00 2.69
2422 2517 4.814234 TCCAACCATAGTCGCATACATTTC 59.186 41.667 0.00 0.00 0.00 2.17
2423 2518 4.776349 TCCAACCATAGTCGCATACATTT 58.224 39.130 0.00 0.00 0.00 2.32
2424 2519 4.415881 TCCAACCATAGTCGCATACATT 57.584 40.909 0.00 0.00 0.00 2.71
2425 2520 4.623932 ATCCAACCATAGTCGCATACAT 57.376 40.909 0.00 0.00 0.00 2.29
2426 2521 4.126437 CAATCCAACCATAGTCGCATACA 58.874 43.478 0.00 0.00 0.00 2.29
2427 2522 3.058914 GCAATCCAACCATAGTCGCATAC 60.059 47.826 0.00 0.00 0.00 2.39
2428 2523 3.138304 GCAATCCAACCATAGTCGCATA 58.862 45.455 0.00 0.00 0.00 3.14
2429 2524 1.949525 GCAATCCAACCATAGTCGCAT 59.050 47.619 0.00 0.00 0.00 4.73
2430 2525 1.378531 GCAATCCAACCATAGTCGCA 58.621 50.000 0.00 0.00 0.00 5.10
2431 2526 0.304705 CGCAATCCAACCATAGTCGC 59.695 55.000 0.00 0.00 0.00 5.19
2432 2527 0.937304 CCGCAATCCAACCATAGTCG 59.063 55.000 0.00 0.00 0.00 4.18
2433 2528 0.663153 GCCGCAATCCAACCATAGTC 59.337 55.000 0.00 0.00 0.00 2.59
2434 2529 1.095228 CGCCGCAATCCAACCATAGT 61.095 55.000 0.00 0.00 0.00 2.12
2435 2530 1.095228 ACGCCGCAATCCAACCATAG 61.095 55.000 0.00 0.00 0.00 2.23
2436 2531 1.078072 ACGCCGCAATCCAACCATA 60.078 52.632 0.00 0.00 0.00 2.74
2437 2532 2.361104 ACGCCGCAATCCAACCAT 60.361 55.556 0.00 0.00 0.00 3.55
2438 2533 3.053291 GACGCCGCAATCCAACCA 61.053 61.111 0.00 0.00 0.00 3.67
2439 2534 3.810896 GGACGCCGCAATCCAACC 61.811 66.667 5.89 0.00 34.87 3.77
2440 2535 3.810896 GGGACGCCGCAATCCAAC 61.811 66.667 11.77 0.00 36.65 3.77
2474 2569 4.153411 GTAGTATACATCTGGGAGGCACT 58.847 47.826 5.50 0.00 42.17 4.40
2475 2570 3.057456 CGTAGTATACATCTGGGAGGCAC 60.057 52.174 5.50 0.00 43.24 5.01
2476 2571 3.154710 CGTAGTATACATCTGGGAGGCA 58.845 50.000 5.50 0.00 43.24 4.75
2477 2572 3.155501 ACGTAGTATACATCTGGGAGGC 58.844 50.000 5.50 0.00 43.24 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.