Multiple sequence alignment - TraesCS2A01G167500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G167500 chr2A 100.000 6005 0 0 1 6005 120471750 120465746 0.000000e+00 11090.0
1 TraesCS2A01G167500 chr2A 100.000 511 0 0 6223 6733 120465528 120465018 0.000000e+00 944.0
2 TraesCS2A01G167500 chr2A 91.892 296 23 1 397 691 434580255 434579960 4.860000e-111 412.0
3 TraesCS2A01G167500 chr2A 82.955 88 10 3 8 91 30327291 30327377 2.600000e-09 75.0
4 TraesCS2A01G167500 chr2D 94.279 3391 125 21 2651 6005 118558679 118555322 0.000000e+00 5123.0
5 TraesCS2A01G167500 chr2D 94.076 1958 59 23 692 2619 118560611 118558681 0.000000e+00 2920.0
6 TraesCS2A01G167500 chr2D 86.213 544 29 18 6226 6726 118555300 118554760 1.280000e-151 547.0
7 TraesCS2A01G167500 chr2D 85.965 399 44 10 1 395 118560993 118560603 3.760000e-112 416.0
8 TraesCS2A01G167500 chr2D 90.878 296 25 2 397 691 632796071 632796365 4.890000e-106 396.0
9 TraesCS2A01G167500 chr2D 77.033 209 36 8 5 211 592093679 592093877 7.140000e-20 110.0
10 TraesCS2A01G167500 chr2B 95.206 2357 88 7 2772 5104 170390499 170392854 0.000000e+00 3703.0
11 TraesCS2A01G167500 chr2B 93.294 2028 75 26 737 2736 170388112 170390106 0.000000e+00 2935.0
12 TraesCS2A01G167500 chr2B 95.168 745 31 5 5220 5960 170392867 170393610 0.000000e+00 1171.0
13 TraesCS2A01G167500 chr2B 83.633 501 43 17 6237 6727 170393648 170394119 1.040000e-117 435.0
14 TraesCS2A01G167500 chr7D 91.216 296 25 1 397 691 82851427 82851132 1.050000e-107 401.0
15 TraesCS2A01G167500 chr7D 90.847 295 25 2 399 692 32648099 32648392 1.760000e-105 394.0
16 TraesCS2A01G167500 chr7D 77.835 194 31 7 6 194 45887235 45887049 7.140000e-20 110.0
17 TraesCS2A01G167500 chr7B 90.698 301 26 2 397 695 552567516 552567216 3.780000e-107 399.0
18 TraesCS2A01G167500 chr3B 90.878 296 26 1 397 691 131077096 131077391 4.890000e-106 396.0
19 TraesCS2A01G167500 chr3B 75.431 232 39 11 3 229 586472725 586472943 5.560000e-16 97.1
20 TraesCS2A01G167500 chr5B 90.847 295 26 1 399 692 8364017 8364311 1.760000e-105 394.0
21 TraesCS2A01G167500 chr5B 89.869 306 30 1 387 691 100571408 100571103 6.330000e-105 392.0
22 TraesCS2A01G167500 chr5B 90.066 302 27 3 398 697 450041818 450042118 8.190000e-104 388.0
23 TraesCS2A01G167500 chr7A 79.661 177 24 7 3 174 437074792 437074961 4.270000e-22 117.0
24 TraesCS2A01G167500 chr7A 78.613 173 25 7 7 174 433744472 433744307 3.320000e-18 104.0
25 TraesCS2A01G167500 chr1B 89.394 66 6 1 248 313 427649829 427649893 1.560000e-11 82.4
26 TraesCS2A01G167500 chrUn 82.418 91 11 5 3 89 9912486 9912575 2.600000e-09 75.0
27 TraesCS2A01G167500 chr5A 81.111 90 12 4 6 91 417297570 417297482 4.360000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G167500 chr2A 120465018 120471750 6732 True 6017.0 11090 100.00000 1 6733 2 chr2A.!!$R2 6732
1 TraesCS2A01G167500 chr2D 118554760 118560993 6233 True 2251.5 5123 90.13325 1 6726 4 chr2D.!!$R1 6725
2 TraesCS2A01G167500 chr2B 170388112 170394119 6007 False 2061.0 3703 91.82525 737 6727 4 chr2B.!!$F1 5990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 610 0.032515 TTCGGAGGTGCTCATAGGGA 60.033 55.0 0.00 0.00 31.08 4.20 F
613 617 0.034059 GTGCTCATAGGGATCGGGTG 59.966 60.0 0.00 0.00 0.00 4.61 F
615 619 0.034059 GCTCATAGGGATCGGGTGTG 59.966 60.0 0.00 0.00 0.00 3.82 F
616 620 0.034059 CTCATAGGGATCGGGTGTGC 59.966 60.0 0.00 0.00 0.00 4.57 F
665 669 0.093535 CGCGTGTACATGAGCACTTG 59.906 55.0 19.38 9.20 33.78 3.16 F
2462 2509 0.110295 TGTAGCCTGCCTTTGCTTGA 59.890 50.0 0.00 0.00 39.00 3.02 F
2899 3311 0.886490 CAATAGCCGGAGTCCATGCC 60.886 60.0 5.05 0.00 0.00 4.40 F
3838 4275 0.666913 GGTCCACATCATGATGCAGC 59.333 55.0 31.17 21.35 42.39 5.25 F
5357 5804 0.912487 TACCCCAGAAGGCGATTGGT 60.912 55.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2348 0.251916 ATGTTGCTAGGCTTACCGCA 59.748 50.000 0.00 0.00 42.76 5.69 R
2308 2349 0.657840 CATGTTGCTAGGCTTACCGC 59.342 55.000 0.00 0.00 42.76 5.68 R
2574 2621 2.534042 AGCCTAGTGCCTCACTCTAA 57.466 50.000 2.39 0.00 41.21 2.10 R
2606 2653 2.755952 AACCCTGGCCTATGGATTTC 57.244 50.000 3.32 0.00 0.00 2.17 R
2648 2696 7.898918 TGAACAGATCACATGGATTTTCATTT 58.101 30.769 0.00 0.00 36.00 2.32 R
3655 4092 0.107214 TACATACTGCTGGGCTTGCC 60.107 55.000 2.49 2.49 0.00 4.52 R
4743 5180 2.562738 AGAAAAAGCCTTACCATGTGCC 59.437 45.455 0.00 0.00 0.00 5.01 R
5417 5864 1.725164 GGAACGACGACAATTCCAGTC 59.275 52.381 0.00 0.00 41.40 3.51 R
6655 7149 0.733223 GGACCGAGCGAGACACTTTC 60.733 60.000 0.00 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.476479 ACTTTATTCCATCTTCAGGGAGCT 59.524 41.667 0.00 0.00 34.02 4.09
28 29 4.428294 TTATTCCATCTTCAGGGAGCTG 57.572 45.455 0.00 0.00 34.02 4.24
44 45 3.883744 CTGCCACCGCCTCGTCTTT 62.884 63.158 0.00 0.00 0.00 2.52
47 48 1.738099 CCACCGCCTCGTCTTTCTG 60.738 63.158 0.00 0.00 0.00 3.02
51 52 0.319555 CCGCCTCGTCTTTCTGAACA 60.320 55.000 0.00 0.00 0.00 3.18
63 64 6.251549 GTCTTTCTGAACAAGACACAAACTC 58.748 40.000 14.39 0.00 46.48 3.01
68 69 5.054390 TGAACAAGACACAAACTCCAAAC 57.946 39.130 0.00 0.00 0.00 2.93
108 109 1.068921 GGAGCAAGATCTCTCCCGC 59.931 63.158 16.41 6.17 42.30 6.13
115 116 3.798954 GATCTCTCCCGCCGGCAAG 62.799 68.421 28.98 19.96 0.00 4.01
129 130 2.036098 CAAGGGCCATGCTCACCA 59.964 61.111 6.18 0.00 0.00 4.17
140 141 2.821366 CTCACCACGCCTCCATGC 60.821 66.667 0.00 0.00 0.00 4.06
171 172 1.323412 CTGGAGATGAGGTAGACCGG 58.677 60.000 0.00 0.00 42.08 5.28
173 174 1.655329 GAGATGAGGTAGACCGGCG 59.345 63.158 0.00 0.00 42.08 6.46
179 180 4.814294 GGTAGACCGGCGGCAGTG 62.814 72.222 28.71 1.30 0.00 3.66
224 226 6.014156 CCCTACTCTTTTTCTTCTTGAGGAGA 60.014 42.308 0.00 0.00 37.80 3.71
225 227 7.445945 CCTACTCTTTTTCTTCTTGAGGAGAA 58.554 38.462 0.00 0.00 42.03 2.87
235 237 0.767375 TTGAGGAGAAGGCTGTTGCT 59.233 50.000 0.00 0.00 39.59 3.91
241 243 2.289694 GGAGAAGGCTGTTGCTTGAGTA 60.290 50.000 0.00 0.00 39.59 2.59
246 248 4.286297 AGGCTGTTGCTTGAGTAATGTA 57.714 40.909 0.00 0.00 39.59 2.29
247 249 4.848357 AGGCTGTTGCTTGAGTAATGTAT 58.152 39.130 0.00 0.00 39.59 2.29
249 251 4.260375 GGCTGTTGCTTGAGTAATGTATCG 60.260 45.833 0.00 0.00 39.59 2.92
254 256 4.754322 TGCTTGAGTAATGTATCGCTTCA 58.246 39.130 0.00 0.00 0.00 3.02
263 265 6.865726 AGTAATGTATCGCTTCAGATTAGCAG 59.134 38.462 0.00 0.00 38.55 4.24
265 267 2.540265 ATCGCTTCAGATTAGCAGGG 57.460 50.000 0.00 0.00 38.55 4.45
266 268 0.465705 TCGCTTCAGATTAGCAGGGG 59.534 55.000 0.00 0.00 38.55 4.79
267 269 0.533755 CGCTTCAGATTAGCAGGGGG 60.534 60.000 0.00 0.00 38.55 5.40
395 399 4.578928 ACACATGTAACAACCCTGAAGAAC 59.421 41.667 0.00 0.00 0.00 3.01
396 400 4.023193 CACATGTAACAACCCTGAAGAACC 60.023 45.833 0.00 0.00 0.00 3.62
397 401 3.217681 TGTAACAACCCTGAAGAACCC 57.782 47.619 0.00 0.00 0.00 4.11
398 402 2.781174 TGTAACAACCCTGAAGAACCCT 59.219 45.455 0.00 0.00 0.00 4.34
399 403 2.364972 AACAACCCTGAAGAACCCTG 57.635 50.000 0.00 0.00 0.00 4.45
400 404 1.222567 ACAACCCTGAAGAACCCTGT 58.777 50.000 0.00 0.00 0.00 4.00
401 405 1.133792 ACAACCCTGAAGAACCCTGTG 60.134 52.381 0.00 0.00 0.00 3.66
402 406 0.478507 AACCCTGAAGAACCCTGTGG 59.521 55.000 0.00 0.00 37.80 4.17
411 415 4.018195 ACCCTGTGGTTGGATGGT 57.982 55.556 0.00 0.00 44.75 3.55
412 416 2.250494 ACCCTGTGGTTGGATGGTT 58.750 52.632 0.00 0.00 44.75 3.67
413 417 1.451449 ACCCTGTGGTTGGATGGTTA 58.549 50.000 0.00 0.00 44.75 2.85
414 418 1.354368 ACCCTGTGGTTGGATGGTTAG 59.646 52.381 0.00 0.00 44.75 2.34
415 419 1.633432 CCCTGTGGTTGGATGGTTAGA 59.367 52.381 0.00 0.00 0.00 2.10
416 420 2.356125 CCCTGTGGTTGGATGGTTAGAG 60.356 54.545 0.00 0.00 0.00 2.43
417 421 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
418 422 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
419 423 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
420 424 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
422 426 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
423 427 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
424 428 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
425 429 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
426 430 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
427 431 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
428 432 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
429 433 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
430 434 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
435 439 3.875865 GGACTGTGGTATCCCAACC 57.124 57.895 0.00 0.00 44.15 3.77
436 440 0.255033 GGACTGTGGTATCCCAACCC 59.745 60.000 0.00 0.00 44.15 4.11
437 441 0.988832 GACTGTGGTATCCCAACCCA 59.011 55.000 0.00 0.00 44.15 4.51
438 442 0.991920 ACTGTGGTATCCCAACCCAG 59.008 55.000 8.87 8.87 44.15 4.45
439 443 0.991920 CTGTGGTATCCCAACCCAGT 59.008 55.000 0.00 0.00 44.15 4.00
440 444 2.193127 CTGTGGTATCCCAACCCAGTA 58.807 52.381 0.00 0.00 44.15 2.74
441 445 2.170607 CTGTGGTATCCCAACCCAGTAG 59.829 54.545 0.00 0.00 44.15 2.57
442 446 1.489230 GTGGTATCCCAACCCAGTAGG 59.511 57.143 0.00 0.00 44.15 3.18
455 459 3.004752 CCAGTAGGGTTCAAATCCTGG 57.995 52.381 4.76 0.00 40.54 4.45
456 460 2.308866 CCAGTAGGGTTCAAATCCTGGT 59.691 50.000 4.76 0.00 40.54 4.00
457 461 3.347216 CAGTAGGGTTCAAATCCTGGTG 58.653 50.000 4.76 0.00 40.54 4.17
458 462 2.092323 GTAGGGTTCAAATCCTGGTGC 58.908 52.381 4.76 0.00 40.54 5.01
459 463 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
460 464 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
461 465 1.272147 GGGTTCAAATCCTGGTGCTCT 60.272 52.381 0.00 0.00 0.00 4.09
462 466 2.087646 GGTTCAAATCCTGGTGCTCTC 58.912 52.381 0.00 0.00 0.00 3.20
463 467 2.553028 GGTTCAAATCCTGGTGCTCTCA 60.553 50.000 0.00 0.00 0.00 3.27
464 468 3.350833 GTTCAAATCCTGGTGCTCTCAT 58.649 45.455 0.00 0.00 0.00 2.90
465 469 3.726557 TCAAATCCTGGTGCTCTCATT 57.273 42.857 0.00 0.00 0.00 2.57
466 470 4.038271 TCAAATCCTGGTGCTCTCATTT 57.962 40.909 0.00 0.00 0.00 2.32
467 471 5.178096 TCAAATCCTGGTGCTCTCATTTA 57.822 39.130 0.00 0.00 0.00 1.40
468 472 5.759059 TCAAATCCTGGTGCTCTCATTTAT 58.241 37.500 0.00 0.00 0.00 1.40
469 473 6.189859 TCAAATCCTGGTGCTCTCATTTATT 58.810 36.000 0.00 0.00 0.00 1.40
470 474 6.319658 TCAAATCCTGGTGCTCTCATTTATTC 59.680 38.462 0.00 0.00 0.00 1.75
471 475 4.156455 TCCTGGTGCTCTCATTTATTCC 57.844 45.455 0.00 0.00 0.00 3.01
472 476 3.782523 TCCTGGTGCTCTCATTTATTCCT 59.217 43.478 0.00 0.00 0.00 3.36
473 477 3.881688 CCTGGTGCTCTCATTTATTCCTG 59.118 47.826 0.00 0.00 0.00 3.86
474 478 3.881688 CTGGTGCTCTCATTTATTCCTGG 59.118 47.826 0.00 0.00 0.00 4.45
475 479 3.523157 TGGTGCTCTCATTTATTCCTGGA 59.477 43.478 0.00 0.00 0.00 3.86
476 480 4.166725 TGGTGCTCTCATTTATTCCTGGAT 59.833 41.667 0.00 0.00 0.00 3.41
477 481 5.136105 GGTGCTCTCATTTATTCCTGGATT 58.864 41.667 0.00 0.00 0.00 3.01
478 482 5.595952 GGTGCTCTCATTTATTCCTGGATTT 59.404 40.000 0.00 0.00 0.00 2.17
479 483 6.772716 GGTGCTCTCATTTATTCCTGGATTTA 59.227 38.462 0.00 0.00 0.00 1.40
480 484 7.449704 GGTGCTCTCATTTATTCCTGGATTTAT 59.550 37.037 0.00 0.00 0.00 1.40
481 485 8.854117 GTGCTCTCATTTATTCCTGGATTTATT 58.146 33.333 0.00 0.00 0.00 1.40
482 486 9.425248 TGCTCTCATTTATTCCTGGATTTATTT 57.575 29.630 0.00 0.00 0.00 1.40
483 487 9.905171 GCTCTCATTTATTCCTGGATTTATTTC 57.095 33.333 0.00 0.00 0.00 2.17
493 497 7.333528 TCCTGGATTTATTTCAGAATTTCCG 57.666 36.000 0.00 0.00 0.00 4.30
494 498 6.321181 TCCTGGATTTATTTCAGAATTTCCGG 59.679 38.462 0.00 0.00 30.94 5.14
495 499 5.901552 TGGATTTATTTCAGAATTTCCGGC 58.098 37.500 0.00 0.00 0.00 6.13
496 500 4.976116 GGATTTATTTCAGAATTTCCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
497 501 5.220970 GGATTTATTTCAGAATTTCCGGCGA 60.221 40.000 9.30 0.00 0.00 5.54
498 502 5.828299 TTTATTTCAGAATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
499 503 3.698029 ATTTCAGAATTTCCGGCGATG 57.302 42.857 9.30 0.00 0.00 3.84
500 504 0.732571 TTCAGAATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
501 505 1.010797 CAGAATTTCCGGCGATGCG 60.011 57.895 9.30 0.00 0.00 4.73
513 517 2.669419 CGATGCGCATTCAGTGAGA 58.331 52.632 26.12 0.00 0.00 3.27
514 518 0.575859 CGATGCGCATTCAGTGAGAG 59.424 55.000 26.12 4.12 0.00 3.20
515 519 0.935898 GATGCGCATTCAGTGAGAGG 59.064 55.000 26.12 0.00 0.00 3.69
516 520 0.538584 ATGCGCATTCAGTGAGAGGA 59.461 50.000 19.28 0.00 0.00 3.71
517 521 0.108472 TGCGCATTCAGTGAGAGGAG 60.108 55.000 5.66 0.00 0.00 3.69
518 522 0.174389 GCGCATTCAGTGAGAGGAGA 59.826 55.000 0.30 0.00 0.00 3.71
519 523 1.919918 CGCATTCAGTGAGAGGAGAC 58.080 55.000 0.00 0.00 0.00 3.36
520 524 1.796982 CGCATTCAGTGAGAGGAGACG 60.797 57.143 0.00 0.00 0.00 4.18
521 525 1.203523 GCATTCAGTGAGAGGAGACGT 59.796 52.381 0.00 0.00 0.00 4.34
522 526 2.353208 GCATTCAGTGAGAGGAGACGTT 60.353 50.000 0.00 0.00 0.00 3.99
523 527 3.862642 GCATTCAGTGAGAGGAGACGTTT 60.863 47.826 0.00 0.00 0.00 3.60
524 528 3.644884 TTCAGTGAGAGGAGACGTTTC 57.355 47.619 0.00 0.00 0.00 2.78
525 529 2.865079 TCAGTGAGAGGAGACGTTTCT 58.135 47.619 6.02 0.00 33.37 2.52
526 530 2.554462 TCAGTGAGAGGAGACGTTTCTG 59.446 50.000 6.02 0.00 29.47 3.02
527 531 2.294791 CAGTGAGAGGAGACGTTTCTGT 59.705 50.000 6.02 0.00 29.47 3.41
528 532 2.554893 AGTGAGAGGAGACGTTTCTGTC 59.445 50.000 6.02 5.22 39.21 3.51
529 533 1.535896 TGAGAGGAGACGTTTCTGTCG 59.464 52.381 6.02 0.00 43.70 4.35
530 534 1.805345 GAGAGGAGACGTTTCTGTCGA 59.195 52.381 6.02 0.00 43.70 4.20
531 535 1.536331 AGAGGAGACGTTTCTGTCGAC 59.464 52.381 9.11 9.11 43.70 4.20
532 536 0.237761 AGGAGACGTTTCTGTCGACG 59.762 55.000 11.62 6.07 43.70 5.12
533 537 0.236711 GGAGACGTTTCTGTCGACGA 59.763 55.000 11.62 8.49 43.70 4.20
534 538 1.316414 GAGACGTTTCTGTCGACGAC 58.684 55.000 20.97 20.97 43.70 4.34
535 539 0.383983 AGACGTTTCTGTCGACGACG 60.384 55.000 22.06 22.91 43.70 5.12
536 540 0.383491 GACGTTTCTGTCGACGACGA 60.383 55.000 27.94 18.27 46.56 4.20
552 556 3.681835 GAGGCGTCCACGGTGACT 61.682 66.667 10.28 0.00 40.23 3.41
553 557 3.222354 GAGGCGTCCACGGTGACTT 62.222 63.158 10.28 0.00 40.23 3.01
554 558 2.737376 GGCGTCCACGGTGACTTC 60.737 66.667 10.28 0.00 40.23 3.01
555 559 2.028484 GCGTCCACGGTGACTTCA 59.972 61.111 10.28 0.00 40.23 3.02
556 560 1.374252 GCGTCCACGGTGACTTCAT 60.374 57.895 10.28 0.00 40.23 2.57
557 561 0.108992 GCGTCCACGGTGACTTCATA 60.109 55.000 10.28 0.00 40.23 2.15
558 562 1.670674 GCGTCCACGGTGACTTCATAA 60.671 52.381 10.28 0.00 40.23 1.90
559 563 2.679450 CGTCCACGGTGACTTCATAAA 58.321 47.619 10.28 0.00 35.37 1.40
560 564 3.259064 CGTCCACGGTGACTTCATAAAT 58.741 45.455 10.28 0.00 35.37 1.40
561 565 3.306166 CGTCCACGGTGACTTCATAAATC 59.694 47.826 10.28 0.00 35.37 2.17
562 566 4.504858 GTCCACGGTGACTTCATAAATCT 58.495 43.478 10.28 0.00 32.39 2.40
563 567 4.567159 GTCCACGGTGACTTCATAAATCTC 59.433 45.833 10.28 0.00 32.39 2.75
564 568 4.221924 TCCACGGTGACTTCATAAATCTCA 59.778 41.667 10.28 0.00 0.00 3.27
565 569 4.935205 CCACGGTGACTTCATAAATCTCAA 59.065 41.667 10.28 0.00 0.00 3.02
566 570 5.063944 CCACGGTGACTTCATAAATCTCAAG 59.936 44.000 10.28 0.00 0.00 3.02
567 571 5.869344 CACGGTGACTTCATAAATCTCAAGA 59.131 40.000 0.74 0.00 0.00 3.02
568 572 6.536582 CACGGTGACTTCATAAATCTCAAGAT 59.463 38.462 0.74 0.00 36.07 2.40
569 573 6.536582 ACGGTGACTTCATAAATCTCAAGATG 59.463 38.462 0.00 0.00 34.49 2.90
570 574 6.758416 CGGTGACTTCATAAATCTCAAGATGA 59.242 38.462 0.00 0.00 34.49 2.92
571 575 7.440556 CGGTGACTTCATAAATCTCAAGATGAT 59.559 37.037 0.00 0.00 34.49 2.45
572 576 9.770097 GGTGACTTCATAAATCTCAAGATGATA 57.230 33.333 0.00 0.00 34.49 2.15
576 580 9.228949 ACTTCATAAATCTCAAGATGATATGCC 57.771 33.333 15.00 0.00 36.32 4.40
577 581 7.838771 TCATAAATCTCAAGATGATATGCCG 57.161 36.000 15.00 0.00 36.32 5.69
578 582 6.820152 TCATAAATCTCAAGATGATATGCCGG 59.180 38.462 0.00 0.00 36.32 6.13
579 583 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
580 584 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
581 585 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
582 586 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
583 587 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
584 588 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
585 589 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
586 590 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
587 591 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
588 592 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
589 593 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
590 594 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
591 595 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
592 596 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
593 597 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
594 598 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
595 599 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
596 600 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
597 601 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
598 602 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
599 603 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
600 604 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
601 605 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
602 606 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
603 607 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
604 608 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
605 609 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
606 610 0.032515 TTCGGAGGTGCTCATAGGGA 60.033 55.000 0.00 0.00 31.08 4.20
607 611 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
608 612 0.605589 CGGAGGTGCTCATAGGGATC 59.394 60.000 0.00 0.00 31.08 3.36
609 613 0.605589 GGAGGTGCTCATAGGGATCG 59.394 60.000 0.00 0.00 31.08 3.69
610 614 0.605589 GAGGTGCTCATAGGGATCGG 59.394 60.000 0.00 0.00 0.00 4.18
611 615 0.833834 AGGTGCTCATAGGGATCGGG 60.834 60.000 0.00 0.00 0.00 5.14
612 616 1.122019 GGTGCTCATAGGGATCGGGT 61.122 60.000 0.00 0.00 0.00 5.28
613 617 0.034059 GTGCTCATAGGGATCGGGTG 59.966 60.000 0.00 0.00 0.00 4.61
614 618 0.398522 TGCTCATAGGGATCGGGTGT 60.399 55.000 0.00 0.00 0.00 4.16
615 619 0.034059 GCTCATAGGGATCGGGTGTG 59.966 60.000 0.00 0.00 0.00 3.82
616 620 0.034059 CTCATAGGGATCGGGTGTGC 59.966 60.000 0.00 0.00 0.00 4.57
617 621 1.300931 CATAGGGATCGGGTGTGCG 60.301 63.158 0.00 0.00 0.00 5.34
618 622 1.760875 ATAGGGATCGGGTGTGCGT 60.761 57.895 0.00 0.00 0.00 5.24
619 623 2.028125 ATAGGGATCGGGTGTGCGTG 62.028 60.000 0.00 0.00 0.00 5.34
621 625 4.760047 GGATCGGGTGTGCGTGCT 62.760 66.667 0.00 0.00 0.00 4.40
622 626 2.742372 GATCGGGTGTGCGTGCTT 60.742 61.111 0.00 0.00 0.00 3.91
623 627 3.027170 GATCGGGTGTGCGTGCTTG 62.027 63.158 0.00 0.00 0.00 4.01
627 631 4.250431 GGTGTGCGTGCTTGCGTT 62.250 61.111 0.00 0.00 37.81 4.84
628 632 2.722188 GTGTGCGTGCTTGCGTTC 60.722 61.111 0.00 0.00 37.81 3.95
629 633 4.292208 TGTGCGTGCTTGCGTTCG 62.292 61.111 0.00 0.00 37.81 3.95
630 634 4.293626 GTGCGTGCTTGCGTTCGT 62.294 61.111 0.00 0.00 37.81 3.85
631 635 4.292208 TGCGTGCTTGCGTTCGTG 62.292 61.111 0.00 0.00 37.81 4.35
633 637 4.368808 CGTGCTTGCGTTCGTGGG 62.369 66.667 0.00 0.00 0.00 4.61
634 638 4.025401 GTGCTTGCGTTCGTGGGG 62.025 66.667 0.00 0.00 0.00 4.96
635 639 4.243008 TGCTTGCGTTCGTGGGGA 62.243 61.111 0.00 0.00 0.00 4.81
636 640 2.746277 GCTTGCGTTCGTGGGGAT 60.746 61.111 0.00 0.00 0.00 3.85
637 641 3.039202 GCTTGCGTTCGTGGGGATG 62.039 63.158 0.00 0.00 0.00 3.51
638 642 1.375396 CTTGCGTTCGTGGGGATGA 60.375 57.895 0.00 0.00 0.00 2.92
639 643 1.361668 CTTGCGTTCGTGGGGATGAG 61.362 60.000 0.00 0.00 0.00 2.90
640 644 2.107041 TTGCGTTCGTGGGGATGAGT 62.107 55.000 0.00 0.00 0.00 3.41
641 645 2.100631 GCGTTCGTGGGGATGAGTG 61.101 63.158 0.00 0.00 0.00 3.51
642 646 1.292223 CGTTCGTGGGGATGAGTGT 59.708 57.895 0.00 0.00 0.00 3.55
643 647 0.528924 CGTTCGTGGGGATGAGTGTA 59.471 55.000 0.00 0.00 0.00 2.90
644 648 1.136305 CGTTCGTGGGGATGAGTGTAT 59.864 52.381 0.00 0.00 0.00 2.29
645 649 2.550978 GTTCGTGGGGATGAGTGTATG 58.449 52.381 0.00 0.00 0.00 2.39
646 650 0.464036 TCGTGGGGATGAGTGTATGC 59.536 55.000 0.00 0.00 0.00 3.14
647 651 0.875908 CGTGGGGATGAGTGTATGCG 60.876 60.000 0.00 0.00 0.00 4.73
648 652 1.146041 TGGGGATGAGTGTATGCGC 59.854 57.895 0.00 0.00 33.05 6.09
649 653 1.956170 GGGGATGAGTGTATGCGCG 60.956 63.158 0.00 0.00 0.00 6.86
650 654 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
651 655 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
652 656 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
653 657 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
654 658 1.517276 GATGAGTGTATGCGCGTGTAC 59.483 52.381 13.61 11.02 0.00 2.90
655 659 0.241481 TGAGTGTATGCGCGTGTACA 59.759 50.000 13.61 17.65 0.00 2.90
656 660 1.135228 TGAGTGTATGCGCGTGTACAT 60.135 47.619 22.16 13.68 33.78 2.29
657 661 1.255342 GAGTGTATGCGCGTGTACATG 59.745 52.381 22.16 10.89 33.78 3.21
658 662 1.135228 AGTGTATGCGCGTGTACATGA 60.135 47.619 19.38 0.00 33.78 3.07
659 663 1.255342 GTGTATGCGCGTGTACATGAG 59.745 52.381 19.38 16.49 33.78 2.90
660 664 0.229753 GTATGCGCGTGTACATGAGC 59.770 55.000 29.98 29.98 42.34 4.26
662 666 2.379634 TGCGCGTGTACATGAGCAC 61.380 57.895 33.78 18.38 45.69 4.40
663 667 2.094659 GCGCGTGTACATGAGCACT 61.095 57.895 31.14 0.00 41.75 4.40
664 668 1.626654 GCGCGTGTACATGAGCACTT 61.627 55.000 31.14 0.00 41.75 3.16
665 669 0.093535 CGCGTGTACATGAGCACTTG 59.906 55.000 19.38 9.20 33.78 3.16
666 670 1.148310 GCGTGTACATGAGCACTTGT 58.852 50.000 19.38 7.74 37.91 3.16
667 671 1.136252 GCGTGTACATGAGCACTTGTG 60.136 52.381 19.38 0.00 36.20 3.33
668 672 2.135139 CGTGTACATGAGCACTTGTGT 58.865 47.619 9.62 3.46 36.20 3.72
669 673 2.096762 CGTGTACATGAGCACTTGTGTG 60.097 50.000 9.62 0.00 46.37 3.82
670 674 2.872245 GTGTACATGAGCACTTGTGTGT 59.128 45.455 11.99 1.99 45.44 3.72
671 675 2.871633 TGTACATGAGCACTTGTGTGTG 59.128 45.455 11.99 0.00 45.44 3.82
672 676 2.042686 ACATGAGCACTTGTGTGTGT 57.957 45.000 0.00 0.92 45.44 3.72
673 677 3.192541 ACATGAGCACTTGTGTGTGTA 57.807 42.857 0.00 0.00 45.44 2.90
674 678 2.872245 ACATGAGCACTTGTGTGTGTAC 59.128 45.455 0.00 0.00 45.44 2.90
675 679 2.979814 TGAGCACTTGTGTGTGTACT 57.020 45.000 2.61 0.00 45.44 2.73
676 680 4.202212 ACATGAGCACTTGTGTGTGTACTA 60.202 41.667 0.00 0.00 45.44 1.82
677 681 4.394439 TGAGCACTTGTGTGTGTACTAA 57.606 40.909 2.61 0.00 45.44 2.24
678 682 4.956085 TGAGCACTTGTGTGTGTACTAAT 58.044 39.130 2.61 0.00 45.44 1.73
679 683 4.749598 TGAGCACTTGTGTGTGTACTAATG 59.250 41.667 2.61 0.00 45.44 1.90
680 684 4.703897 AGCACTTGTGTGTGTACTAATGT 58.296 39.130 2.61 0.00 45.44 2.71
681 685 5.123227 AGCACTTGTGTGTGTACTAATGTT 58.877 37.500 2.61 0.00 45.44 2.71
682 686 5.236478 AGCACTTGTGTGTGTACTAATGTTC 59.764 40.000 2.61 0.00 45.44 3.18
683 687 5.007234 GCACTTGTGTGTGTACTAATGTTCA 59.993 40.000 2.61 0.00 45.44 3.18
684 688 6.457663 GCACTTGTGTGTGTACTAATGTTCAA 60.458 38.462 2.61 0.00 45.44 2.69
685 689 7.468441 CACTTGTGTGTGTACTAATGTTCAAA 58.532 34.615 0.00 0.00 39.24 2.69
686 690 7.965655 CACTTGTGTGTGTACTAATGTTCAAAA 59.034 33.333 0.00 0.00 39.24 2.44
687 691 8.516234 ACTTGTGTGTGTACTAATGTTCAAAAA 58.484 29.630 0.00 0.00 0.00 1.94
712 716 7.654022 AAACCTGAAGAATGTAACTCCAAAA 57.346 32.000 0.00 0.00 0.00 2.44
801 810 9.483916 AATTTAAACACTTTATTTCTTTCCGGG 57.516 29.630 0.00 0.00 0.00 5.73
810 819 1.115467 TTCTTTCCGGGCAAGCAAAA 58.885 45.000 0.00 0.00 0.00 2.44
811 820 1.115467 TCTTTCCGGGCAAGCAAAAA 58.885 45.000 0.00 0.00 0.00 1.94
815 824 2.162319 TCCGGGCAAGCAAAAATTTC 57.838 45.000 0.00 0.00 0.00 2.17
856 865 4.093556 GGCGTAGTCTCATTTCTTTCTTGG 59.906 45.833 0.00 0.00 0.00 3.61
868 877 0.183971 TTTCTTGGAGGGGACGCAAA 59.816 50.000 0.00 0.00 0.00 3.68
869 878 0.183971 TTCTTGGAGGGGACGCAAAA 59.816 50.000 0.00 0.00 0.00 2.44
870 879 0.536460 TCTTGGAGGGGACGCAAAAC 60.536 55.000 0.00 0.00 0.00 2.43
871 880 0.821711 CTTGGAGGGGACGCAAAACA 60.822 55.000 0.00 0.00 0.00 2.83
872 881 0.395862 TTGGAGGGGACGCAAAACAA 60.396 50.000 0.00 0.00 0.00 2.83
1241 1271 7.845800 ACCTTAAACTTTTTACCTACCCCTTTT 59.154 33.333 0.00 0.00 0.00 2.27
1249 1279 2.735151 ACCTACCCCTTTTATGCTTGC 58.265 47.619 0.00 0.00 0.00 4.01
1387 1417 5.399013 TCGAATCTGTGTGTGTACTGTATG 58.601 41.667 0.00 0.00 0.00 2.39
1391 1421 7.463251 CGAATCTGTGTGTGTACTGTATGATTG 60.463 40.741 0.00 0.00 0.00 2.67
1571 1602 4.905429 TGTTACACATGCTCAGGTATGTT 58.095 39.130 0.00 0.00 44.22 2.71
1572 1603 4.694982 TGTTACACATGCTCAGGTATGTTG 59.305 41.667 0.00 0.00 44.22 3.33
1574 1605 4.019792 ACACATGCTCAGGTATGTTGAA 57.980 40.909 0.00 0.00 44.22 2.69
1576 1607 4.397103 ACACATGCTCAGGTATGTTGAATG 59.603 41.667 0.00 0.00 44.22 2.67
1578 1609 5.012239 ACATGCTCAGGTATGTTGAATGTT 58.988 37.500 0.00 0.00 44.22 2.71
1580 1611 4.910195 TGCTCAGGTATGTTGAATGTTCT 58.090 39.130 0.00 0.00 0.00 3.01
1847 1881 7.361713 GGTTTGATTGTTATTCCATCAACTCGA 60.362 37.037 0.00 0.00 31.85 4.04
2111 2152 3.879295 CAGCTCTCTTGGACAAAAGTGAA 59.121 43.478 0.00 0.00 31.33 3.18
2230 2271 8.777578 ATATGGTAGGTGACTTTACATGAGTA 57.222 34.615 0.00 0.00 43.67 2.59
2257 2298 4.332819 AGCTGACAAAGTTATTGTATCGGC 59.667 41.667 0.00 5.97 32.14 5.54
2304 2345 7.307694 TCAACACTAATGACTGATGATTTTGC 58.692 34.615 0.00 0.00 0.00 3.68
2305 2346 5.872635 ACACTAATGACTGATGATTTTGCG 58.127 37.500 0.00 0.00 0.00 4.85
2306 2347 4.731961 CACTAATGACTGATGATTTTGCGC 59.268 41.667 0.00 0.00 0.00 6.09
2307 2348 4.637534 ACTAATGACTGATGATTTTGCGCT 59.362 37.500 9.73 0.00 0.00 5.92
2308 2349 2.905959 TGACTGATGATTTTGCGCTG 57.094 45.000 9.73 0.00 0.00 5.18
2344 2385 5.682862 GCAACATGGCTTAGATTTTGTATCG 59.317 40.000 0.00 0.00 0.00 2.92
2454 2500 5.012148 CCTTATGTAGTTATGTAGCCTGCCT 59.988 44.000 0.00 0.00 0.00 4.75
2462 2509 0.110295 TGTAGCCTGCCTTTGCTTGA 59.890 50.000 0.00 0.00 39.00 3.02
2564 2611 2.573462 TGACTGAAGGAAGATGAAGGGG 59.427 50.000 0.00 0.00 0.00 4.79
2574 2621 6.805150 AGGAAGATGAAGGGGACTAAATTTT 58.195 36.000 0.00 0.00 42.68 1.82
2606 2653 3.618507 GCACTAGGCTAAGGCAGATATGG 60.619 52.174 11.07 0.00 40.87 2.74
2687 2736 6.818644 GTGATCTGTTCAGCTTATAGAAACCA 59.181 38.462 0.00 0.00 34.17 3.67
2693 2742 6.650807 TGTTCAGCTTATAGAAACCAGAACAG 59.349 38.462 0.00 0.00 38.21 3.16
2732 2781 8.915057 ATCAATAACTAAATCACATCCTCAGG 57.085 34.615 0.00 0.00 0.00 3.86
2738 2787 1.129917 ATCACATCCTCAGGCTGGAG 58.870 55.000 15.73 10.49 36.99 3.86
2799 3211 5.550290 TGAAATTTCCCAGAAAGGAATTGC 58.450 37.500 15.48 0.00 45.30 3.56
2800 3212 4.558226 AATTTCCCAGAAAGGAATTGCC 57.442 40.909 0.00 0.00 45.30 4.52
2861 3273 3.909651 GGTTTGCCCCACTCCCCA 61.910 66.667 0.00 0.00 0.00 4.96
2899 3311 0.886490 CAATAGCCGGAGTCCATGCC 60.886 60.000 5.05 0.00 0.00 4.40
2933 3345 1.251527 ATCGCTCCTTGTCACGAGGT 61.252 55.000 11.22 0.00 38.04 3.85
3006 3433 3.930634 GGCATGGCCTCTTTTATCATC 57.069 47.619 8.35 0.00 46.69 2.92
3014 3441 4.384647 GGCCTCTTTTATCATCCTCACAGT 60.385 45.833 0.00 0.00 0.00 3.55
3139 3569 2.284773 TGGCGCCCTAGGGTTGTA 60.285 61.111 28.96 10.97 37.65 2.41
3530 3967 5.389520 TGGAAGAATGTTGTTATGGTTCCA 58.610 37.500 0.00 0.00 39.86 3.53
3546 3983 4.706476 TGGTTCCAATCTTGATCATTCACC 59.294 41.667 0.00 0.00 0.00 4.02
3607 4044 3.892581 GCTGCCGGTATTGCTGCC 61.893 66.667 1.90 0.00 44.80 4.85
3777 4214 3.951037 TGCCTGACTGTACACATTGTTTT 59.049 39.130 0.00 0.00 0.00 2.43
3828 4265 4.906618 TCTTTTTCACCTAGGTCCACATC 58.093 43.478 12.84 0.00 0.00 3.06
3838 4275 0.666913 GGTCCACATCATGATGCAGC 59.333 55.000 31.17 21.35 42.39 5.25
3976 4413 4.828939 TGATGCTTTGAAGTGTTGGATCTT 59.171 37.500 0.00 0.00 0.00 2.40
3979 4416 4.036734 TGCTTTGAAGTGTTGGATCTTCAC 59.963 41.667 7.04 0.27 46.03 3.18
4224 4661 4.489737 TCCCAGTGATATACTCGGGAAAT 58.510 43.478 12.02 0.00 45.58 2.17
4229 4666 6.017934 CCAGTGATATACTCGGGAAATTTGTG 60.018 42.308 0.00 0.00 37.60 3.33
4297 4734 6.437477 AGACCATGACAGACAGATAACTTACA 59.563 38.462 0.00 0.00 0.00 2.41
4358 4795 3.328382 TCTCGGTGGAGTGGTTATTTG 57.672 47.619 0.00 0.00 41.26 2.32
4743 5180 5.218139 GTCCTTTTCTTTGTGCATCTCTTG 58.782 41.667 0.00 0.00 0.00 3.02
4826 5263 3.450904 AGGCTACATGGAAGTAACTGGA 58.549 45.455 0.00 0.00 0.00 3.86
4850 5287 6.662414 TTTAATGCCGATGTAAGAGAACAG 57.338 37.500 0.00 0.00 31.70 3.16
4905 5342 5.103982 TCCAATATCTCTGGCCAAATTCTCA 60.104 40.000 7.01 0.00 33.63 3.27
4986 5423 7.005709 AGTGGAATAGTTATGGCACCTATAC 57.994 40.000 0.00 0.00 0.00 1.47
4988 5425 7.071950 AGTGGAATAGTTATGGCACCTATACAA 59.928 37.037 0.00 0.00 0.00 2.41
5067 5504 8.354711 AGAGAGATGGTATTATTTCATCGCTA 57.645 34.615 8.34 0.00 44.08 4.26
5180 5627 6.621613 CAACCTAAAGCATAACTTCCCTTTC 58.378 40.000 0.00 0.00 37.75 2.62
5210 5657 8.896744 TCTTTTATGCTTTATCACCTGAAGATG 58.103 33.333 0.00 0.00 0.00 2.90
5357 5804 0.912487 TACCCCAGAAGGCGATTGGT 60.912 55.000 0.00 0.00 0.00 3.67
5417 5864 1.079819 TCTCCGCCTTCTTCAAGCG 60.080 57.895 0.00 0.00 0.00 4.68
5464 5911 3.009033 TCTGGATTTGGTCAGGTTGGTAG 59.991 47.826 0.00 0.00 0.00 3.18
5477 5924 2.038557 GGTTGGTAGTCTCAAAGCCTCA 59.961 50.000 0.00 0.00 0.00 3.86
5480 5927 2.300152 TGGTAGTCTCAAAGCCTCACTG 59.700 50.000 0.00 0.00 0.00 3.66
5490 5937 2.355010 AGCCTCACTGAAAGCTGTTT 57.645 45.000 3.02 0.00 37.60 2.83
5576 6023 4.919774 TTTTGTATAGGCTCCTGGAACA 57.080 40.909 0.00 0.00 0.00 3.18
5696 6143 1.258982 GATGTTAGCCGTGATGAAGCG 59.741 52.381 0.00 0.00 0.00 4.68
5833 6284 4.437390 GGATGAATCAACCTAACTTGTGCG 60.437 45.833 1.99 0.00 0.00 5.34
5855 6306 3.089284 GGCTTGTTTTACATGTAGCCCT 58.911 45.455 20.07 0.00 41.49 5.19
5863 6314 6.653320 TGTTTTACATGTAGCCCTTGAAGTAG 59.347 38.462 5.56 0.00 0.00 2.57
5946 6397 1.397390 GCCTGGGGGATGCAAGATTG 61.397 60.000 0.00 0.00 33.58 2.67
5949 6400 2.579873 CTGGGGGATGCAAGATTGTAG 58.420 52.381 0.00 0.00 0.00 2.74
5961 6412 9.109393 GATGCAAGATTGTAGTAAACCTTGATA 57.891 33.333 0.00 0.00 34.57 2.15
5962 6413 9.632638 ATGCAAGATTGTAGTAAACCTTGATAT 57.367 29.630 0.00 0.00 34.57 1.63
5995 6446 3.233980 ATCGGCAGCGCATCCCTA 61.234 61.111 11.47 0.00 0.00 3.53
5996 6447 2.587247 ATCGGCAGCGCATCCCTAT 61.587 57.895 11.47 0.87 0.00 2.57
6002 6453 1.811558 GCAGCGCATCCCTATCTTTGA 60.812 52.381 11.47 0.00 0.00 2.69
6252 6703 2.158957 TCCAGGTGTTCAGTTCTGTGAC 60.159 50.000 0.00 1.99 0.00 3.67
6276 6727 3.885901 GGAGGTTTGAGTTTCTTCTGCTT 59.114 43.478 0.00 0.00 0.00 3.91
6291 6742 0.253044 TGCTTCTGGACCATGCTACC 59.747 55.000 13.15 0.00 0.00 3.18
6323 6790 8.786826 AGACATGTTATAAAATCAGAACGGAA 57.213 30.769 0.00 0.00 0.00 4.30
6324 6791 8.665685 AGACATGTTATAAAATCAGAACGGAAC 58.334 33.333 0.00 0.00 0.00 3.62
6412 6881 3.428862 GGGCCATTGTTATGAAAGGAACG 60.429 47.826 4.39 0.00 33.37 3.95
6425 6894 2.175811 GAACGCATCAACGGGCAC 59.824 61.111 0.00 0.00 37.37 5.01
6442 6927 4.033472 CGGGCACACTTTAAAACCTTTTTG 59.967 41.667 0.00 0.00 0.00 2.44
6462 6947 7.672983 TTTTGGTTATTTTTGTCAAACAGCA 57.327 28.000 0.00 0.00 0.00 4.41
6464 6949 4.800993 TGGTTATTTTTGTCAAACAGCACG 59.199 37.500 0.00 0.00 0.00 5.34
6477 6962 1.269051 ACAGCACGCTTTAAAACCTGC 60.269 47.619 4.91 4.91 0.00 4.85
6496 6981 1.122323 GCAAATGCACGTTTAACTGCG 59.878 47.619 12.27 0.00 41.59 5.18
6497 6982 2.380660 CAAATGCACGTTTAACTGCGT 58.619 42.857 12.27 10.15 42.45 5.24
6512 6997 2.744202 ACTGCGTAAAAGGAGCAATGAG 59.256 45.455 0.00 0.00 40.63 2.90
6580 7065 3.444916 ACACGGTAGATGCGTAGAAATG 58.555 45.455 0.00 0.00 0.00 2.32
6655 7149 1.301716 CATTACTCCGATGGGCCCG 60.302 63.158 19.37 4.86 0.00 6.13
6707 7201 2.268280 CAGCCTGTCCTGCTCCAG 59.732 66.667 0.00 0.00 36.81 3.86
6727 7221 0.679002 ACGCTCCATGAAGCAGCATT 60.679 50.000 4.32 0.00 42.62 3.56
6728 7222 0.248498 CGCTCCATGAAGCAGCATTG 60.248 55.000 4.32 0.00 42.62 2.82
6729 7223 0.815734 GCTCCATGAAGCAGCATTGT 59.184 50.000 0.00 0.00 42.05 2.71
6730 7224 1.469251 GCTCCATGAAGCAGCATTGTG 60.469 52.381 0.00 0.00 42.05 3.33
6731 7225 1.816835 CTCCATGAAGCAGCATTGTGT 59.183 47.619 0.00 0.00 0.00 3.72
6732 7226 2.230508 CTCCATGAAGCAGCATTGTGTT 59.769 45.455 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.785301 CAGCTCCCTGAAGATGGAATAAA 58.215 43.478 0.00 0.00 41.77 1.40
27 28 3.876589 GAAAGACGAGGCGGTGGCA 62.877 63.158 0.00 0.00 42.47 4.92
28 29 3.119096 GAAAGACGAGGCGGTGGC 61.119 66.667 0.00 0.00 38.90 5.01
44 45 4.214986 TGGAGTTTGTGTCTTGTTCAGA 57.785 40.909 0.00 0.00 0.00 3.27
47 48 5.054390 TGTTTGGAGTTTGTGTCTTGTTC 57.946 39.130 0.00 0.00 0.00 3.18
51 52 4.279671 TGTGTTGTTTGGAGTTTGTGTCTT 59.720 37.500 0.00 0.00 0.00 3.01
63 64 6.787085 TTTAGGTGTTTTTGTGTTGTTTGG 57.213 33.333 0.00 0.00 0.00 3.28
68 69 5.634020 TCCGTTTTTAGGTGTTTTTGTGTTG 59.366 36.000 0.00 0.00 0.00 3.33
121 122 3.321648 ATGGAGGCGTGGTGAGCA 61.322 61.111 0.00 0.00 36.08 4.26
123 124 2.821366 GCATGGAGGCGTGGTGAG 60.821 66.667 0.00 0.00 0.00 3.51
145 146 2.750657 CCTCATCTCCAGTGGCCCC 61.751 68.421 3.51 0.00 0.00 5.80
153 154 0.755698 GCCGGTCTACCTCATCTCCA 60.756 60.000 1.90 0.00 0.00 3.86
154 155 1.797211 CGCCGGTCTACCTCATCTCC 61.797 65.000 1.90 0.00 0.00 3.71
181 182 3.387091 TTTCCCTGCCTCGCGCTA 61.387 61.111 5.56 0.00 38.78 4.26
194 195 6.771267 TCAAGAAGAAAAAGAGTAGGGTTTCC 59.229 38.462 0.00 0.00 31.67 3.13
224 226 3.490348 ACATTACTCAAGCAACAGCCTT 58.510 40.909 0.00 0.00 0.00 4.35
225 227 3.146104 ACATTACTCAAGCAACAGCCT 57.854 42.857 0.00 0.00 0.00 4.58
226 228 4.260375 CGATACATTACTCAAGCAACAGCC 60.260 45.833 0.00 0.00 0.00 4.85
227 229 4.783450 GCGATACATTACTCAAGCAACAGC 60.783 45.833 0.00 0.00 0.00 4.40
228 230 4.568359 AGCGATACATTACTCAAGCAACAG 59.432 41.667 0.00 0.00 0.00 3.16
229 231 4.503910 AGCGATACATTACTCAAGCAACA 58.496 39.130 0.00 0.00 0.00 3.33
230 232 5.063438 TGAAGCGATACATTACTCAAGCAAC 59.937 40.000 0.00 0.00 0.00 4.17
231 233 5.175127 TGAAGCGATACATTACTCAAGCAA 58.825 37.500 0.00 0.00 0.00 3.91
235 237 7.382488 GCTAATCTGAAGCGATACATTACTCAA 59.618 37.037 0.00 0.00 0.00 3.02
241 243 4.993584 CCTGCTAATCTGAAGCGATACATT 59.006 41.667 0.00 0.00 43.11 2.71
246 248 1.071385 CCCCTGCTAATCTGAAGCGAT 59.929 52.381 0.00 0.00 43.11 4.58
247 249 0.465705 CCCCTGCTAATCTGAAGCGA 59.534 55.000 0.00 0.00 43.11 4.93
249 251 0.548510 ACCCCCTGCTAATCTGAAGC 59.451 55.000 0.00 0.00 40.50 3.86
263 265 2.579410 TGTTTCTTTAGCAGACCCCC 57.421 50.000 0.00 0.00 0.00 5.40
265 267 8.732746 TTCTATAATGTTTCTTTAGCAGACCC 57.267 34.615 0.00 0.00 0.00 4.46
395 399 1.633432 TCTAACCATCCAACCACAGGG 59.367 52.381 0.00 0.00 41.29 4.45
396 400 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
397 401 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
398 402 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
399 403 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
400 404 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
401 405 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
402 406 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
403 407 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
404 408 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
405 409 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
406 410 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
407 411 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
408 412 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
409 413 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
435 439 3.004752 CCAGGATTTGAACCCTACTGG 57.995 52.381 0.00 0.00 38.17 4.00
436 440 3.347216 CACCAGGATTTGAACCCTACTG 58.653 50.000 0.00 0.00 0.00 2.74
437 441 2.290960 GCACCAGGATTTGAACCCTACT 60.291 50.000 0.00 0.00 0.00 2.57
438 442 2.092323 GCACCAGGATTTGAACCCTAC 58.908 52.381 0.00 0.00 0.00 3.18
439 443 1.992557 AGCACCAGGATTTGAACCCTA 59.007 47.619 0.00 0.00 0.00 3.53
440 444 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
441 445 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
442 446 2.087646 GAGAGCACCAGGATTTGAACC 58.912 52.381 0.00 0.00 0.00 3.62
443 447 2.783135 TGAGAGCACCAGGATTTGAAC 58.217 47.619 0.00 0.00 0.00 3.18
444 448 3.726557 ATGAGAGCACCAGGATTTGAA 57.273 42.857 0.00 0.00 0.00 2.69
445 449 3.726557 AATGAGAGCACCAGGATTTGA 57.273 42.857 0.00 0.00 0.00 2.69
446 450 6.460676 GGAATAAATGAGAGCACCAGGATTTG 60.461 42.308 0.00 0.00 0.00 2.32
447 451 5.595952 GGAATAAATGAGAGCACCAGGATTT 59.404 40.000 0.00 0.00 0.00 2.17
448 452 5.103771 AGGAATAAATGAGAGCACCAGGATT 60.104 40.000 0.00 0.00 0.00 3.01
449 453 4.414846 AGGAATAAATGAGAGCACCAGGAT 59.585 41.667 0.00 0.00 0.00 3.24
450 454 3.782523 AGGAATAAATGAGAGCACCAGGA 59.217 43.478 0.00 0.00 0.00 3.86
451 455 3.881688 CAGGAATAAATGAGAGCACCAGG 59.118 47.826 0.00 0.00 0.00 4.45
452 456 3.881688 CCAGGAATAAATGAGAGCACCAG 59.118 47.826 0.00 0.00 0.00 4.00
453 457 3.523157 TCCAGGAATAAATGAGAGCACCA 59.477 43.478 0.00 0.00 0.00 4.17
454 458 4.156455 TCCAGGAATAAATGAGAGCACC 57.844 45.455 0.00 0.00 0.00 5.01
455 459 6.705863 AAATCCAGGAATAAATGAGAGCAC 57.294 37.500 0.00 0.00 0.00 4.40
456 460 9.425248 AAATAAATCCAGGAATAAATGAGAGCA 57.575 29.630 0.00 0.00 0.00 4.26
457 461 9.905171 GAAATAAATCCAGGAATAAATGAGAGC 57.095 33.333 0.00 0.00 0.00 4.09
467 471 8.416329 CGGAAATTCTGAAATAAATCCAGGAAT 58.584 33.333 0.00 0.00 0.00 3.01
468 472 7.147915 CCGGAAATTCTGAAATAAATCCAGGAA 60.148 37.037 2.89 0.00 0.00 3.36
469 473 6.321181 CCGGAAATTCTGAAATAAATCCAGGA 59.679 38.462 2.89 0.00 0.00 3.86
470 474 6.507023 CCGGAAATTCTGAAATAAATCCAGG 58.493 40.000 2.89 1.89 0.00 4.45
471 475 5.979517 GCCGGAAATTCTGAAATAAATCCAG 59.020 40.000 5.05 0.00 0.00 3.86
472 476 5.449862 CGCCGGAAATTCTGAAATAAATCCA 60.450 40.000 5.05 0.00 0.00 3.41
473 477 4.976116 CGCCGGAAATTCTGAAATAAATCC 59.024 41.667 5.05 0.00 0.00 3.01
474 478 5.816919 TCGCCGGAAATTCTGAAATAAATC 58.183 37.500 5.05 0.00 0.00 2.17
475 479 5.828299 TCGCCGGAAATTCTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
476 480 5.577835 CATCGCCGGAAATTCTGAAATAAA 58.422 37.500 5.05 0.00 0.00 1.40
477 481 4.497340 GCATCGCCGGAAATTCTGAAATAA 60.497 41.667 5.05 0.00 0.00 1.40
478 482 3.003275 GCATCGCCGGAAATTCTGAAATA 59.997 43.478 5.05 0.00 0.00 1.40
479 483 2.223572 GCATCGCCGGAAATTCTGAAAT 60.224 45.455 5.05 0.00 0.00 2.17
480 484 1.132262 GCATCGCCGGAAATTCTGAAA 59.868 47.619 5.05 0.00 0.00 2.69
481 485 0.732571 GCATCGCCGGAAATTCTGAA 59.267 50.000 5.05 0.00 0.00 3.02
482 486 1.428370 CGCATCGCCGGAAATTCTGA 61.428 55.000 5.05 0.00 0.00 3.27
483 487 1.010797 CGCATCGCCGGAAATTCTG 60.011 57.895 5.05 0.00 0.00 3.02
484 488 3.409856 CGCATCGCCGGAAATTCT 58.590 55.556 5.05 0.00 0.00 2.40
495 499 0.575859 CTCTCACTGAATGCGCATCG 59.424 55.000 25.53 17.09 0.00 3.84
496 500 0.935898 CCTCTCACTGAATGCGCATC 59.064 55.000 25.53 17.12 0.00 3.91
497 501 0.538584 TCCTCTCACTGAATGCGCAT 59.461 50.000 19.28 19.28 0.00 4.73
498 502 0.108472 CTCCTCTCACTGAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
499 503 0.174389 TCTCCTCTCACTGAATGCGC 59.826 55.000 0.00 0.00 0.00 6.09
500 504 1.796982 CGTCTCCTCTCACTGAATGCG 60.797 57.143 0.00 0.00 0.00 4.73
501 505 1.203523 ACGTCTCCTCTCACTGAATGC 59.796 52.381 0.00 0.00 0.00 3.56
502 506 3.584406 AACGTCTCCTCTCACTGAATG 57.416 47.619 0.00 0.00 0.00 2.67
503 507 3.829601 AGAAACGTCTCCTCTCACTGAAT 59.170 43.478 0.00 0.00 0.00 2.57
504 508 3.004839 CAGAAACGTCTCCTCTCACTGAA 59.995 47.826 0.00 0.00 28.78 3.02
505 509 2.554462 CAGAAACGTCTCCTCTCACTGA 59.446 50.000 0.00 0.00 28.78 3.41
506 510 2.294791 ACAGAAACGTCTCCTCTCACTG 59.705 50.000 0.00 0.00 28.78 3.66
507 511 2.554893 GACAGAAACGTCTCCTCTCACT 59.445 50.000 0.00 0.00 32.92 3.41
508 512 2.666069 CGACAGAAACGTCTCCTCTCAC 60.666 54.545 0.00 0.00 33.54 3.51
509 513 1.535896 CGACAGAAACGTCTCCTCTCA 59.464 52.381 0.00 0.00 33.54 3.27
510 514 1.805345 TCGACAGAAACGTCTCCTCTC 59.195 52.381 0.00 0.00 33.54 3.20
511 515 1.536331 GTCGACAGAAACGTCTCCTCT 59.464 52.381 11.55 0.00 33.54 3.69
512 516 1.725292 CGTCGACAGAAACGTCTCCTC 60.725 57.143 17.16 0.00 34.30 3.71
513 517 0.237761 CGTCGACAGAAACGTCTCCT 59.762 55.000 17.16 0.00 34.30 3.69
514 518 0.236711 TCGTCGACAGAAACGTCTCC 59.763 55.000 17.16 0.00 39.78 3.71
515 519 1.316414 GTCGTCGACAGAAACGTCTC 58.684 55.000 20.28 0.00 39.78 3.36
516 520 0.383983 CGTCGTCGACAGAAACGTCT 60.384 55.000 24.13 0.00 39.78 4.18
517 521 0.383491 TCGTCGTCGACAGAAACGTC 60.383 55.000 24.13 0.00 41.35 4.34
518 522 0.383983 CTCGTCGTCGACAGAAACGT 60.384 55.000 24.13 0.00 41.35 3.99
519 523 1.058590 CCTCGTCGTCGACAGAAACG 61.059 60.000 24.13 17.77 41.35 3.60
520 524 1.335697 GCCTCGTCGTCGACAGAAAC 61.336 60.000 24.13 12.60 41.35 2.78
521 525 1.081641 GCCTCGTCGTCGACAGAAA 60.082 57.895 24.13 6.41 41.35 2.52
522 526 2.559840 GCCTCGTCGTCGACAGAA 59.440 61.111 24.13 8.76 41.35 3.02
523 527 3.785499 CGCCTCGTCGTCGACAGA 61.785 66.667 24.13 19.27 41.35 3.41
524 528 3.978867 GACGCCTCGTCGTCGACAG 62.979 68.421 24.13 18.50 46.56 3.51
525 529 4.081030 GACGCCTCGTCGTCGACA 62.081 66.667 24.13 10.99 46.56 4.35
535 539 3.222354 AAGTCACCGTGGACGCCTC 62.222 63.158 0.00 0.00 42.62 4.70
536 540 3.222354 GAAGTCACCGTGGACGCCT 62.222 63.158 0.00 0.00 42.62 5.52
537 541 2.737376 GAAGTCACCGTGGACGCC 60.737 66.667 0.00 0.00 42.62 5.68
538 542 0.108992 TATGAAGTCACCGTGGACGC 60.109 55.000 0.00 0.00 42.62 5.19
539 543 2.357327 TTATGAAGTCACCGTGGACG 57.643 50.000 0.00 0.00 42.62 4.79
540 544 4.504858 AGATTTATGAAGTCACCGTGGAC 58.495 43.478 0.00 0.00 38.08 4.02
541 545 4.221924 TGAGATTTATGAAGTCACCGTGGA 59.778 41.667 0.00 0.00 0.00 4.02
542 546 4.503910 TGAGATTTATGAAGTCACCGTGG 58.496 43.478 0.00 0.00 0.00 4.94
543 547 5.869344 TCTTGAGATTTATGAAGTCACCGTG 59.131 40.000 0.00 0.00 0.00 4.94
544 548 6.037786 TCTTGAGATTTATGAAGTCACCGT 57.962 37.500 0.00 0.00 0.00 4.83
545 549 6.758416 TCATCTTGAGATTTATGAAGTCACCG 59.242 38.462 0.00 0.00 31.21 4.94
546 550 8.674263 ATCATCTTGAGATTTATGAAGTCACC 57.326 34.615 0.00 0.00 32.47 4.02
550 554 9.228949 GGCATATCATCTTGAGATTTATGAAGT 57.771 33.333 17.06 0.00 33.82 3.01
551 555 8.388853 CGGCATATCATCTTGAGATTTATGAAG 58.611 37.037 17.06 10.18 33.82 3.02
552 556 7.335171 CCGGCATATCATCTTGAGATTTATGAA 59.665 37.037 17.06 0.00 33.82 2.57
553 557 6.820152 CCGGCATATCATCTTGAGATTTATGA 59.180 38.462 17.06 5.24 33.82 2.15
554 558 6.457934 GCCGGCATATCATCTTGAGATTTATG 60.458 42.308 24.80 12.28 34.43 1.90
555 559 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
556 560 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
557 561 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
558 562 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
559 563 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
560 564 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
561 565 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
562 566 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
563 567 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
564 568 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
565 569 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
566 570 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
567 571 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
568 572 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
569 573 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
570 574 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
571 575 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
572 576 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
573 577 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
574 578 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
575 579 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
576 580 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
577 581 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
578 582 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
579 583 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
580 584 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
581 585 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
582 586 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
583 587 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
584 588 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
585 589 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
586 590 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
587 591 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
588 592 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
589 593 0.605589 GATCCCTATGAGCACCTCCG 59.394 60.000 0.00 0.00 0.00 4.63
590 594 0.605589 CGATCCCTATGAGCACCTCC 59.394 60.000 0.00 0.00 0.00 4.30
591 595 0.605589 CCGATCCCTATGAGCACCTC 59.394 60.000 0.00 0.00 0.00 3.85
592 596 0.833834 CCCGATCCCTATGAGCACCT 60.834 60.000 0.00 0.00 0.00 4.00
593 597 1.122019 ACCCGATCCCTATGAGCACC 61.122 60.000 0.00 0.00 0.00 5.01
594 598 0.034059 CACCCGATCCCTATGAGCAC 59.966 60.000 0.00 0.00 0.00 4.40
595 599 0.398522 ACACCCGATCCCTATGAGCA 60.399 55.000 0.00 0.00 0.00 4.26
596 600 0.034059 CACACCCGATCCCTATGAGC 59.966 60.000 0.00 0.00 0.00 4.26
597 601 0.034059 GCACACCCGATCCCTATGAG 59.966 60.000 0.00 0.00 0.00 2.90
598 602 1.744320 CGCACACCCGATCCCTATGA 61.744 60.000 0.00 0.00 0.00 2.15
599 603 1.300931 CGCACACCCGATCCCTATG 60.301 63.158 0.00 0.00 0.00 2.23
600 604 1.760875 ACGCACACCCGATCCCTAT 60.761 57.895 0.00 0.00 0.00 2.57
601 605 2.363276 ACGCACACCCGATCCCTA 60.363 61.111 0.00 0.00 0.00 3.53
602 606 4.082523 CACGCACACCCGATCCCT 62.083 66.667 0.00 0.00 0.00 4.20
604 608 4.760047 AGCACGCACACCCGATCC 62.760 66.667 0.00 0.00 0.00 3.36
605 609 2.742372 AAGCACGCACACCCGATC 60.742 61.111 0.00 0.00 0.00 3.69
606 610 3.049674 CAAGCACGCACACCCGAT 61.050 61.111 0.00 0.00 0.00 4.18
610 614 4.250431 AACGCAAGCACGCACACC 62.250 61.111 0.00 0.00 45.62 4.16
611 615 2.722188 GAACGCAAGCACGCACAC 60.722 61.111 0.00 0.00 45.62 3.82
612 616 4.292208 CGAACGCAAGCACGCACA 62.292 61.111 0.00 0.00 45.62 4.57
613 617 4.293626 ACGAACGCAAGCACGCAC 62.294 61.111 0.00 0.00 45.62 5.34
614 618 4.292208 CACGAACGCAAGCACGCA 62.292 61.111 0.00 0.00 45.62 5.24
616 620 4.368808 CCCACGAACGCAAGCACG 62.369 66.667 0.00 0.00 45.62 5.34
617 621 4.025401 CCCCACGAACGCAAGCAC 62.025 66.667 0.00 0.00 45.62 4.40
618 622 3.545124 ATCCCCACGAACGCAAGCA 62.545 57.895 0.00 0.00 45.62 3.91
619 623 2.746277 ATCCCCACGAACGCAAGC 60.746 61.111 0.00 0.00 45.62 4.01
621 625 1.375396 CTCATCCCCACGAACGCAA 60.375 57.895 0.00 0.00 0.00 4.85
622 626 2.264480 CTCATCCCCACGAACGCA 59.736 61.111 0.00 0.00 0.00 5.24
623 627 2.100631 CACTCATCCCCACGAACGC 61.101 63.158 0.00 0.00 0.00 4.84
624 628 0.528924 TACACTCATCCCCACGAACG 59.471 55.000 0.00 0.00 0.00 3.95
625 629 2.550978 CATACACTCATCCCCACGAAC 58.449 52.381 0.00 0.00 0.00 3.95
626 630 1.134521 GCATACACTCATCCCCACGAA 60.135 52.381 0.00 0.00 0.00 3.85
627 631 0.464036 GCATACACTCATCCCCACGA 59.536 55.000 0.00 0.00 0.00 4.35
628 632 0.875908 CGCATACACTCATCCCCACG 60.876 60.000 0.00 0.00 0.00 4.94
629 633 1.160329 GCGCATACACTCATCCCCAC 61.160 60.000 0.30 0.00 0.00 4.61
630 634 1.146041 GCGCATACACTCATCCCCA 59.854 57.895 0.30 0.00 0.00 4.96
631 635 1.956170 CGCGCATACACTCATCCCC 60.956 63.158 8.75 0.00 0.00 4.81
632 636 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
633 637 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
634 638 1.517276 GTACACGCGCATACACTCATC 59.483 52.381 5.73 0.00 0.00 2.92
635 639 1.135228 TGTACACGCGCATACACTCAT 60.135 47.619 16.59 0.00 0.00 2.90
636 640 0.241481 TGTACACGCGCATACACTCA 59.759 50.000 16.59 0.00 0.00 3.41
637 641 1.255342 CATGTACACGCGCATACACTC 59.745 52.381 21.26 0.06 34.24 3.51
638 642 1.135228 TCATGTACACGCGCATACACT 60.135 47.619 21.26 10.71 34.24 3.55
639 643 1.255342 CTCATGTACACGCGCATACAC 59.745 52.381 21.26 7.44 34.24 2.90
640 644 1.555477 CTCATGTACACGCGCATACA 58.445 50.000 21.14 21.14 35.82 2.29
641 645 0.229753 GCTCATGTACACGCGCATAC 59.770 55.000 5.73 9.92 0.00 2.39
642 646 0.179124 TGCTCATGTACACGCGCATA 60.179 50.000 5.73 0.00 0.00 3.14
643 647 1.447663 TGCTCATGTACACGCGCAT 60.448 52.632 5.73 0.00 0.00 4.73
644 648 2.048690 TGCTCATGTACACGCGCA 60.049 55.556 5.73 1.93 0.00 6.09
645 649 1.626654 AAGTGCTCATGTACACGCGC 61.627 55.000 5.73 15.43 41.72 6.86
646 650 0.093535 CAAGTGCTCATGTACACGCG 59.906 55.000 3.53 3.53 41.72 6.01
647 651 1.136252 CACAAGTGCTCATGTACACGC 60.136 52.381 0.00 1.89 41.72 5.34
648 652 2.096762 CACACAAGTGCTCATGTACACG 60.097 50.000 0.00 0.00 41.72 4.49
649 653 3.526385 CACACAAGTGCTCATGTACAC 57.474 47.619 0.00 11.39 39.21 2.90
661 665 7.618502 TTTGAACATTAGTACACACACAAGT 57.381 32.000 0.00 0.00 0.00 3.16
662 666 8.903570 TTTTTGAACATTAGTACACACACAAG 57.096 30.769 0.00 0.00 0.00 3.16
686 690 7.654022 TTGGAGTTACATTCTTCAGGTTTTT 57.346 32.000 0.00 0.00 0.00 1.94
687 691 7.654022 TTTGGAGTTACATTCTTCAGGTTTT 57.346 32.000 0.00 0.00 0.00 2.43
688 692 7.654022 TTTTGGAGTTACATTCTTCAGGTTT 57.346 32.000 0.00 0.00 0.00 3.27
689 693 7.039714 GGATTTTGGAGTTACATTCTTCAGGTT 60.040 37.037 0.00 0.00 0.00 3.50
690 694 6.434340 GGATTTTGGAGTTACATTCTTCAGGT 59.566 38.462 0.00 0.00 0.00 4.00
691 695 6.434028 TGGATTTTGGAGTTACATTCTTCAGG 59.566 38.462 0.00 0.00 0.00 3.86
692 696 7.452880 TGGATTTTGGAGTTACATTCTTCAG 57.547 36.000 0.00 0.00 0.00 3.02
693 697 8.421249 AATGGATTTTGGAGTTACATTCTTCA 57.579 30.769 0.00 0.00 0.00 3.02
694 698 9.143631 CAAATGGATTTTGGAGTTACATTCTTC 57.856 33.333 0.00 0.00 40.90 2.87
695 699 8.869109 TCAAATGGATTTTGGAGTTACATTCTT 58.131 29.630 0.00 0.00 44.07 2.52
696 700 8.421249 TCAAATGGATTTTGGAGTTACATTCT 57.579 30.769 0.00 0.00 44.07 2.40
697 701 9.487790 TTTCAAATGGATTTTGGAGTTACATTC 57.512 29.630 0.00 0.00 44.07 2.67
699 703 9.657419 GATTTCAAATGGATTTTGGAGTTACAT 57.343 29.630 0.00 0.00 44.07 2.29
700 704 7.812191 CGATTTCAAATGGATTTTGGAGTTACA 59.188 33.333 0.00 0.00 44.07 2.41
701 705 7.812669 ACGATTTCAAATGGATTTTGGAGTTAC 59.187 33.333 0.00 0.00 44.07 2.50
702 706 7.891561 ACGATTTCAAATGGATTTTGGAGTTA 58.108 30.769 0.00 0.00 44.07 2.24
703 707 6.758254 ACGATTTCAAATGGATTTTGGAGTT 58.242 32.000 0.00 0.00 44.07 3.01
704 708 6.345096 ACGATTTCAAATGGATTTTGGAGT 57.655 33.333 0.00 0.00 44.07 3.85
705 709 7.656707 AAACGATTTCAAATGGATTTTGGAG 57.343 32.000 0.00 0.00 44.07 3.86
706 710 9.547753 TTAAAACGATTTCAAATGGATTTTGGA 57.452 25.926 5.84 0.00 44.07 3.53
725 729 8.859517 TTTTAGGGTCTGTTTGATTTAAAACG 57.140 30.769 0.00 0.00 41.92 3.60
801 810 6.303021 TCCTCAAATGAAATTTTTGCTTGC 57.697 33.333 0.00 0.00 46.10 4.01
810 819 8.023128 CGCCGATATAATTCCTCAAATGAAATT 58.977 33.333 0.00 0.37 38.98 1.82
811 820 7.174946 ACGCCGATATAATTCCTCAAATGAAAT 59.825 33.333 0.00 0.00 0.00 2.17
815 824 5.862924 ACGCCGATATAATTCCTCAAATG 57.137 39.130 0.00 0.00 0.00 2.32
856 865 1.407618 AGTTTTGTTTTGCGTCCCCTC 59.592 47.619 0.00 0.00 0.00 4.30
953 962 3.195698 GGTGATGCTTCGGGCGAC 61.196 66.667 0.00 0.00 45.43 5.19
1241 1271 0.739462 CCACGAACCGAGCAAGCATA 60.739 55.000 0.00 0.00 0.00 3.14
1249 1279 0.595567 TCGTTTGACCACGAACCGAG 60.596 55.000 0.00 0.00 46.02 4.63
1387 1417 7.940850 AGTACACATGTTATTTATGCCCAATC 58.059 34.615 0.00 0.00 0.00 2.67
1391 1421 7.282224 TGAGAAGTACACATGTTATTTATGCCC 59.718 37.037 0.00 0.00 0.00 5.36
1571 1602 6.053632 TGCTAAATCTGAGGAGAACATTCA 57.946 37.500 0.00 0.00 0.00 2.57
1572 1603 6.112058 ACTGCTAAATCTGAGGAGAACATTC 58.888 40.000 0.00 0.00 36.01 2.67
1574 1605 5.690464 ACTGCTAAATCTGAGGAGAACAT 57.310 39.130 0.00 0.00 36.01 2.71
1576 1607 6.809630 AAAACTGCTAAATCTGAGGAGAAC 57.190 37.500 0.00 0.00 36.01 3.01
1638 1670 8.770010 ATGGCAGTAAGACTAATTAGTACTCT 57.230 34.615 18.03 8.61 36.50 3.24
1645 1677 8.978472 AGTTGAGTATGGCAGTAAGACTAATTA 58.022 33.333 0.00 0.00 0.00 1.40
1847 1881 2.159156 GGAAAAACCTTCCAACAAGCGT 60.159 45.455 0.00 0.00 38.45 5.07
2111 2152 6.077993 TCCATACCTGTATAGAGCATGAGTT 58.922 40.000 0.00 0.00 0.00 3.01
2230 2271 8.612619 CCGATACAATAACTTTGTCAGCTTAAT 58.387 33.333 0.00 0.00 34.11 1.40
2257 2298 4.003648 AGACAGCCTATTGTTCGAAAAGG 58.996 43.478 0.00 6.10 0.00 3.11
2304 2345 2.962253 GCTAGGCTTACCGCAGCG 60.962 66.667 8.18 8.18 41.12 5.18
2305 2346 1.449601 TTGCTAGGCTTACCGCAGC 60.450 57.895 0.00 0.00 44.66 5.25
2306 2347 0.391130 TGTTGCTAGGCTTACCGCAG 60.391 55.000 0.00 0.00 42.76 5.18
2307 2348 0.251916 ATGTTGCTAGGCTTACCGCA 59.748 50.000 0.00 0.00 42.76 5.69
2308 2349 0.657840 CATGTTGCTAGGCTTACCGC 59.342 55.000 0.00 0.00 42.76 5.68
2317 2358 6.199937 ACAAAATCTAAGCCATGTTGCTAG 57.800 37.500 0.00 0.00 41.80 3.42
2344 2385 5.356426 AGTTGCAACCTGTTTAAAATGACC 58.644 37.500 25.62 0.00 0.00 4.02
2385 2426 3.944087 ACTTCTTGCACTTAGGGTCATC 58.056 45.455 0.00 0.00 0.00 2.92
2454 2500 9.665719 AATAAAAAGAACTTTTCCTCAAGCAAA 57.334 25.926 12.00 0.00 41.45 3.68
2501 2548 9.274206 AGAAAATAAGTGTCTAGGACAAAAGTC 57.726 33.333 1.77 0.00 44.49 3.01
2564 2611 7.674471 AGTGCCTCACTCTAAAAATTTAGTC 57.326 36.000 11.55 0.00 41.21 2.59
2574 2621 2.534042 AGCCTAGTGCCTCACTCTAA 57.466 50.000 2.39 0.00 41.21 2.10
2606 2653 2.755952 AACCCTGGCCTATGGATTTC 57.244 50.000 3.32 0.00 0.00 2.17
2648 2696 7.898918 TGAACAGATCACATGGATTTTCATTT 58.101 30.769 0.00 0.00 36.00 2.32
2687 2736 5.614308 TGATTGTGAATCACAGACTGTTCT 58.386 37.500 16.10 0.00 45.39 3.01
2718 2767 1.489649 CTCCAGCCTGAGGATGTGATT 59.510 52.381 16.42 0.00 37.40 2.57
2799 3211 7.144722 TGCAACTAAACTCAGAATATTGTGG 57.855 36.000 12.28 6.22 0.00 4.17
2800 3212 7.219535 GCATGCAACTAAACTCAGAATATTGTG 59.780 37.037 14.21 6.25 0.00 3.33
2904 3316 0.461961 AAGGAGCGATCTACCAGCAC 59.538 55.000 0.00 0.00 0.00 4.40
2933 3345 1.523154 GGATCGCACCCACAAAAGCA 61.523 55.000 0.00 0.00 0.00 3.91
2967 3394 0.541863 CCTTCCACCGGTGCTAGAAT 59.458 55.000 29.75 0.00 0.00 2.40
3006 3433 1.067000 CAGAGAAGCCAGACTGTGAGG 60.067 57.143 0.93 0.00 30.58 3.86
3014 3441 3.072915 TCAATGTTTCCAGAGAAGCCAGA 59.927 43.478 0.00 0.00 32.59 3.86
3086 3513 2.751259 TGAGCCTCATCTTCAATTGCAC 59.249 45.455 0.00 0.00 0.00 4.57
3094 3521 0.179051 CCAGCCTGAGCCTCATCTTC 60.179 60.000 0.00 0.00 41.25 2.87
3139 3569 1.866015 TTCTCCTGGGATGATCGTGT 58.134 50.000 0.00 0.00 0.00 4.49
3485 3921 8.637196 TCCAATAGTATGTAGATACCTGACTG 57.363 38.462 6.41 0.00 35.88 3.51
3530 3967 3.952323 CAGCTGGGTGAATGATCAAGATT 59.048 43.478 5.57 0.00 37.30 2.40
3546 3983 2.026822 ACACCCTGAAATAGACAGCTGG 60.027 50.000 19.93 0.00 34.47 4.85
3607 4044 1.942657 CTAGCATGGAAACCATCACGG 59.057 52.381 0.00 0.00 43.15 4.94
3655 4092 0.107214 TACATACTGCTGGGCTTGCC 60.107 55.000 2.49 2.49 0.00 4.52
3769 4206 9.282247 GATTAGTGATGACAAGCTAAAACAATG 57.718 33.333 0.00 0.00 0.00 2.82
3777 4214 5.658634 AGACTGGATTAGTGATGACAAGCTA 59.341 40.000 0.00 0.00 40.53 3.32
3828 4265 4.639334 ACCTTATCAGTAGCTGCATCATG 58.361 43.478 4.12 0.00 0.00 3.07
3838 4275 6.015519 CCATCCTTCTCAGACCTTATCAGTAG 60.016 46.154 0.00 0.00 0.00 2.57
3976 4413 8.105097 TCCAGAAATTAAATCATCAAACGTGA 57.895 30.769 0.00 0.00 38.41 4.35
4189 4626 3.686016 TCACTGGGAATGTCTTTTAGGC 58.314 45.455 0.00 0.00 0.00 3.93
4204 4641 6.017934 CACAAATTTCCCGAGTATATCACTGG 60.018 42.308 0.00 0.00 37.72 4.00
4224 4661 7.390440 AGCAATAATAGCTTACTGACACACAAA 59.610 33.333 0.00 0.00 39.87 2.83
4229 4666 6.238211 CCACAGCAATAATAGCTTACTGACAC 60.238 42.308 0.00 0.00 41.14 3.67
4743 5180 2.562738 AGAAAAAGCCTTACCATGTGCC 59.437 45.455 0.00 0.00 0.00 5.01
4826 5263 7.047891 TCTGTTCTCTTACATCGGCATTAAAT 58.952 34.615 0.00 0.00 0.00 1.40
4850 5287 4.009675 TCACTGATGCCACCTTGTAAATC 58.990 43.478 0.00 0.00 0.00 2.17
4905 5342 3.136626 GGTGGGTTCATTATGAGGCTAGT 59.863 47.826 0.00 0.00 0.00 2.57
4988 5425 7.998964 CCCCTACCTGTAAAATGAGTAATCATT 59.001 37.037 12.46 12.46 41.59 2.57
5067 5504 4.626081 ACCTTTGCACGCCGAGCT 62.626 61.111 8.20 0.00 0.00 4.09
5104 5541 4.220602 ACAAATCAAAATAGGTGGGAGCAC 59.779 41.667 0.00 0.00 0.00 4.40
5105 5542 4.415596 ACAAATCAAAATAGGTGGGAGCA 58.584 39.130 0.00 0.00 0.00 4.26
5106 5543 6.377146 TCTTACAAATCAAAATAGGTGGGAGC 59.623 38.462 0.00 0.00 0.00 4.70
5108 5545 8.748412 CAATCTTACAAATCAAAATAGGTGGGA 58.252 33.333 0.00 0.00 0.00 4.37
5164 5603 3.529319 AGATGGGAAAGGGAAGTTATGCT 59.471 43.478 0.00 0.00 0.00 3.79
5180 5627 6.547141 TCAGGTGATAAAGCATAAAAGATGGG 59.453 38.462 0.00 0.00 0.00 4.00
5417 5864 1.725164 GGAACGACGACAATTCCAGTC 59.275 52.381 0.00 0.00 41.40 3.51
5464 5911 2.225255 GCTTTCAGTGAGGCTTTGAGAC 59.775 50.000 11.37 0.00 0.00 3.36
5477 5924 5.343307 AAATGAACCAAACAGCTTTCAGT 57.657 34.783 2.97 0.00 31.72 3.41
5480 5927 6.250089 CACAAAAATGAACCAAACAGCTTTC 58.750 36.000 0.00 0.00 0.00 2.62
5490 5937 4.441356 GCTCTGAACCACAAAAATGAACCA 60.441 41.667 0.00 0.00 0.00 3.67
5544 5991 7.779798 AGGAGCCTATACAAAATTAAAGATGCA 59.220 33.333 0.00 0.00 0.00 3.96
5547 5994 8.502738 TCCAGGAGCCTATACAAAATTAAAGAT 58.497 33.333 0.00 0.00 0.00 2.40
5550 5997 7.891183 TGTTCCAGGAGCCTATACAAAATTAAA 59.109 33.333 0.00 0.00 0.00 1.52
5561 6008 4.497516 AGTGATATGTTCCAGGAGCCTAT 58.502 43.478 0.00 0.73 0.00 2.57
5576 6023 5.465532 AGATCGTGCATCTGAAGTGATAT 57.534 39.130 0.00 0.00 40.71 1.63
5705 6152 1.927174 CCTCCGCTTTCAATCGTAGTG 59.073 52.381 0.00 0.00 0.00 2.74
5773 6220 4.559153 GCACAACTGCATGACCTTATTTT 58.441 39.130 0.00 0.00 43.62 1.82
5833 6284 3.503827 GGCTACATGTAAAACAAGCCC 57.496 47.619 20.07 6.36 41.49 5.19
5855 6306 7.663827 TCGAGATTTTGTAAGGTCTACTTCAA 58.336 34.615 0.00 0.00 40.64 2.69
5863 6314 7.365840 ACAATTCTCGAGATTTTGTAAGGTC 57.634 36.000 28.84 0.00 32.52 3.85
5949 6400 8.723942 ACATCTCAGTTGATATCAAGGTTTAC 57.276 34.615 18.47 6.63 36.39 2.01
5961 6412 2.467838 CGATGCGACATCTCAGTTGAT 58.532 47.619 14.85 0.00 0.00 2.57
5962 6413 1.469767 CCGATGCGACATCTCAGTTGA 60.470 52.381 14.85 0.00 0.00 3.18
6222 6673 2.301296 CTGAACACCTGGACAGTGAGAT 59.699 50.000 0.00 0.00 0.00 2.75
6223 6674 1.688735 CTGAACACCTGGACAGTGAGA 59.311 52.381 0.00 0.00 0.00 3.27
6224 6675 1.414181 ACTGAACACCTGGACAGTGAG 59.586 52.381 0.00 0.00 41.16 3.51
6225 6676 1.496060 ACTGAACACCTGGACAGTGA 58.504 50.000 0.00 0.00 41.16 3.41
6226 6677 2.158900 AGAACTGAACACCTGGACAGTG 60.159 50.000 0.00 0.00 41.73 3.66
6227 6678 2.119495 AGAACTGAACACCTGGACAGT 58.881 47.619 0.00 7.64 43.92 3.55
6228 6679 2.158900 ACAGAACTGAACACCTGGACAG 60.159 50.000 8.87 7.01 36.58 3.51
6229 6680 1.837439 ACAGAACTGAACACCTGGACA 59.163 47.619 8.87 0.00 0.00 4.02
6230 6681 2.158957 TCACAGAACTGAACACCTGGAC 60.159 50.000 8.87 0.00 0.00 4.02
6231 6682 2.115427 TCACAGAACTGAACACCTGGA 58.885 47.619 8.87 0.00 0.00 3.86
6232 6683 2.213499 GTCACAGAACTGAACACCTGG 58.787 52.381 8.87 0.00 0.00 4.45
6233 6684 2.213499 GGTCACAGAACTGAACACCTG 58.787 52.381 8.87 0.00 0.00 4.00
6234 6685 1.202533 CGGTCACAGAACTGAACACCT 60.203 52.381 8.87 0.00 0.00 4.00
6235 6686 1.217882 CGGTCACAGAACTGAACACC 58.782 55.000 8.87 9.37 0.00 4.16
6252 6703 2.808543 CAGAAGAAACTCAAACCTCCGG 59.191 50.000 0.00 0.00 0.00 5.14
6261 6712 3.495100 GGTCCAGAAGCAGAAGAAACTCA 60.495 47.826 0.00 0.00 0.00 3.41
6276 6727 2.543037 TACAGGTAGCATGGTCCAGA 57.457 50.000 0.00 0.00 0.00 3.86
6323 6790 4.497674 GCTCGTCAAACATCTACTATCCGT 60.498 45.833 0.00 0.00 0.00 4.69
6324 6791 3.975670 GCTCGTCAAACATCTACTATCCG 59.024 47.826 0.00 0.00 0.00 4.18
6326 6793 3.975670 CCGCTCGTCAAACATCTACTATC 59.024 47.826 0.00 0.00 0.00 2.08
6329 6796 1.135083 CCCGCTCGTCAAACATCTACT 60.135 52.381 0.00 0.00 0.00 2.57
6342 6809 2.501223 TAAACTGACAGGCCCGCTCG 62.501 60.000 7.51 0.00 0.00 5.03
6391 6860 3.769536 CGTTCCTTTCATAACAATGGCC 58.230 45.455 0.00 0.00 0.00 5.36
6412 6881 0.878416 TAAAGTGTGCCCGTTGATGC 59.122 50.000 0.00 0.00 0.00 3.91
6442 6927 4.317769 GCGTGCTGTTTGACAAAAATAACC 60.318 41.667 1.27 0.00 0.00 2.85
6462 6947 2.799978 GCATTTGCAGGTTTTAAAGCGT 59.200 40.909 1.09 0.00 41.59 5.07
6477 6962 2.380660 ACGCAGTTAAACGTGCATTTG 58.619 42.857 0.00 0.00 37.78 2.32
6496 6981 1.468520 TGCGCTCATTGCTCCTTTTAC 59.531 47.619 9.73 0.00 40.11 2.01
6497 6982 1.739466 CTGCGCTCATTGCTCCTTTTA 59.261 47.619 9.73 0.00 40.11 1.52
6512 6997 2.399396 TTGCTCTTTTAACACTGCGC 57.601 45.000 0.00 0.00 0.00 6.09
6580 7065 2.069273 CCACTCGAGTCACATGGAAAC 58.931 52.381 16.96 0.00 31.69 2.78
6606 7091 1.340893 TGGGTGGACCATATGCAAGTG 60.341 52.381 0.00 0.00 46.80 3.16
6607 7092 0.998928 TGGGTGGACCATATGCAAGT 59.001 50.000 0.00 0.00 46.80 3.16
6608 7093 3.901087 TGGGTGGACCATATGCAAG 57.099 52.632 0.00 0.00 46.80 4.01
6655 7149 0.733223 GGACCGAGCGAGACACTTTC 60.733 60.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.