Multiple sequence alignment - TraesCS2A01G167100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G167100 chr2A 100.000 6739 0 0 1886 8624 119313277 119306539 0.000000e+00 12445.0
1 TraesCS2A01G167100 chr2A 100.000 1718 0 0 1 1718 119315162 119313445 0.000000e+00 3173.0
2 TraesCS2A01G167100 chr2A 85.185 216 32 0 2716 2931 462313188 462312973 1.130000e-53 222.0
3 TraesCS2A01G167100 chr2A 84.475 219 34 0 2703 2921 273813817 273813599 5.240000e-52 217.0
4 TraesCS2A01G167100 chr2B 95.396 2259 83 11 2701 4942 168836664 168834410 0.000000e+00 3576.0
5 TraesCS2A01G167100 chr2B 93.845 2372 81 22 6279 8623 168832966 168830633 0.000000e+00 3511.0
6 TraesCS2A01G167100 chr2B 96.364 1705 49 10 3 1697 168840217 168838516 0.000000e+00 2793.0
7 TraesCS2A01G167100 chr2B 96.031 1310 47 5 4938 6247 168834269 168832965 0.000000e+00 2126.0
8 TraesCS2A01G167100 chr2B 97.111 623 15 2 1953 2575 168837657 168837038 0.000000e+00 1048.0
9 TraesCS2A01G167100 chr2B 83.871 1085 156 14 2703 3771 555848176 555847095 0.000000e+00 1016.0
10 TraesCS2A01G167100 chr2B 97.222 36 1 0 1938 1973 168838055 168838020 2.600000e-05 62.1
11 TraesCS2A01G167100 chr5D 81.641 2304 342 48 2703 4942 277251807 277249521 0.000000e+00 1836.0
12 TraesCS2A01G167100 chr5D 82.477 1187 185 14 3772 4938 498666291 498665108 0.000000e+00 1018.0
13 TraesCS2A01G167100 chr5D 82.456 1197 164 29 3767 4938 270204400 270205575 0.000000e+00 1005.0
14 TraesCS2A01G167100 chr5D 95.522 67 1 2 2636 2701 284895064 284894999 1.180000e-18 106.0
15 TraesCS2A01G167100 chr5D 94.118 68 3 1 2635 2701 251424225 251424158 1.530000e-17 102.0
16 TraesCS2A01G167100 chr2D 80.285 2318 366 55 2701 4942 650966758 650969060 0.000000e+00 1664.0
17 TraesCS2A01G167100 chr2D 89.533 535 12 12 8124 8616 118050483 118049951 9.440000e-179 638.0
18 TraesCS2A01G167100 chr7B 80.676 2277 316 70 2703 4912 490602589 490604808 0.000000e+00 1653.0
19 TraesCS2A01G167100 chr7B 83.795 1191 158 22 3783 4942 366049502 366048316 0.000000e+00 1098.0
20 TraesCS2A01G167100 chr7B 84.828 435 61 2 4943 5372 420069402 420068968 4.780000e-117 433.0
21 TraesCS2A01G167100 chr7B 84.828 435 61 2 4943 5372 729315973 729316407 4.780000e-117 433.0
22 TraesCS2A01G167100 chr7B 84.793 434 61 2 4943 5371 443304509 443304076 1.720000e-116 431.0
23 TraesCS2A01G167100 chr3A 84.323 1078 156 11 2703 3770 95024785 95025859 0.000000e+00 1042.0
24 TraesCS2A01G167100 chr3A 83.089 1159 155 21 3769 4892 353162296 353163448 0.000000e+00 1016.0
25 TraesCS2A01G167100 chr3B 84.274 1081 148 15 2703 3771 544788695 544789765 0.000000e+00 1035.0
26 TraesCS2A01G167100 chr3B 83.685 1091 147 24 2703 3777 217987845 217988920 0.000000e+00 1000.0
27 TraesCS2A01G167100 chr3B 83.501 1091 150 23 2703 3777 219486555 219487631 0.000000e+00 990.0
28 TraesCS2A01G167100 chr3B 83.963 767 101 13 4197 4942 325799599 325800364 0.000000e+00 715.0
29 TraesCS2A01G167100 chr6A 82.250 1200 176 26 3767 4942 587812191 587811005 0.000000e+00 1002.0
30 TraesCS2A01G167100 chr6A 95.455 66 2 1 2636 2700 270600497 270600432 4.260000e-18 104.0
31 TraesCS2A01G167100 chr6D 82.512 1075 162 14 2703 3767 431848397 431849455 0.000000e+00 920.0
32 TraesCS2A01G167100 chr6D 93.151 73 4 1 2630 2701 210769523 210769595 1.180000e-18 106.0
33 TraesCS2A01G167100 chrUn 82.644 991 157 13 2795 3777 111063239 111064222 0.000000e+00 863.0
34 TraesCS2A01G167100 chr5A 83.064 927 124 16 3769 4673 436325460 436324545 0.000000e+00 811.0
35 TraesCS2A01G167100 chr5A 85.023 434 60 2 4943 5371 24340493 24340060 3.700000e-118 436.0
36 TraesCS2A01G167100 chr5A 84.793 434 61 2 4943 5371 82312822 82313255 1.720000e-116 431.0
37 TraesCS2A01G167100 chr7A 80.417 960 161 19 3998 4942 573439464 573438517 0.000000e+00 706.0
38 TraesCS2A01G167100 chr7A 84.793 434 61 2 4943 5371 136192016 136192449 1.720000e-116 431.0
39 TraesCS2A01G167100 chr7A 74.925 335 74 8 1048 1377 193663455 193663784 2.510000e-30 145.0
40 TraesCS2A01G167100 chr7A 94.118 68 3 1 2635 2701 636844816 636844883 1.530000e-17 102.0
41 TraesCS2A01G167100 chr6B 84.305 669 81 13 4291 4942 225861840 225861179 4.390000e-177 632.0
42 TraesCS2A01G167100 chr3D 84.793 434 61 2 4943 5371 417207825 417208258 1.720000e-116 431.0
43 TraesCS2A01G167100 chr1A 84.598 435 62 2 4943 5372 491265121 491264687 2.220000e-115 427.0
44 TraesCS2A01G167100 chr5B 96.970 66 1 1 2636 2700 400094364 400094429 9.150000e-20 110.0
45 TraesCS2A01G167100 chr5B 95.522 67 1 2 2636 2701 347653337 347653272 1.180000e-18 106.0
46 TraesCS2A01G167100 chr1B 95.522 67 1 2 2636 2701 319127251 319127186 1.180000e-18 106.0
47 TraesCS2A01G167100 chr4B 90.541 74 6 1 2629 2701 135816980 135817053 7.130000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G167100 chr2A 119306539 119315162 8623 True 7809.000000 12445 100.000000 1 8624 2 chr2A.!!$R3 8623
1 TraesCS2A01G167100 chr2B 168830633 168840217 9584 True 2186.016667 3576 95.994833 3 8623 6 chr2B.!!$R2 8620
2 TraesCS2A01G167100 chr2B 555847095 555848176 1081 True 1016.000000 1016 83.871000 2703 3771 1 chr2B.!!$R1 1068
3 TraesCS2A01G167100 chr5D 277249521 277251807 2286 True 1836.000000 1836 81.641000 2703 4942 1 chr5D.!!$R2 2239
4 TraesCS2A01G167100 chr5D 498665108 498666291 1183 True 1018.000000 1018 82.477000 3772 4938 1 chr5D.!!$R4 1166
5 TraesCS2A01G167100 chr5D 270204400 270205575 1175 False 1005.000000 1005 82.456000 3767 4938 1 chr5D.!!$F1 1171
6 TraesCS2A01G167100 chr2D 650966758 650969060 2302 False 1664.000000 1664 80.285000 2701 4942 1 chr2D.!!$F1 2241
7 TraesCS2A01G167100 chr2D 118049951 118050483 532 True 638.000000 638 89.533000 8124 8616 1 chr2D.!!$R1 492
8 TraesCS2A01G167100 chr7B 490602589 490604808 2219 False 1653.000000 1653 80.676000 2703 4912 1 chr7B.!!$F1 2209
9 TraesCS2A01G167100 chr7B 366048316 366049502 1186 True 1098.000000 1098 83.795000 3783 4942 1 chr7B.!!$R1 1159
10 TraesCS2A01G167100 chr3A 95024785 95025859 1074 False 1042.000000 1042 84.323000 2703 3770 1 chr3A.!!$F1 1067
11 TraesCS2A01G167100 chr3A 353162296 353163448 1152 False 1016.000000 1016 83.089000 3769 4892 1 chr3A.!!$F2 1123
12 TraesCS2A01G167100 chr3B 544788695 544789765 1070 False 1035.000000 1035 84.274000 2703 3771 1 chr3B.!!$F4 1068
13 TraesCS2A01G167100 chr3B 217987845 217988920 1075 False 1000.000000 1000 83.685000 2703 3777 1 chr3B.!!$F1 1074
14 TraesCS2A01G167100 chr3B 219486555 219487631 1076 False 990.000000 990 83.501000 2703 3777 1 chr3B.!!$F2 1074
15 TraesCS2A01G167100 chr3B 325799599 325800364 765 False 715.000000 715 83.963000 4197 4942 1 chr3B.!!$F3 745
16 TraesCS2A01G167100 chr6A 587811005 587812191 1186 True 1002.000000 1002 82.250000 3767 4942 1 chr6A.!!$R2 1175
17 TraesCS2A01G167100 chr6D 431848397 431849455 1058 False 920.000000 920 82.512000 2703 3767 1 chr6D.!!$F2 1064
18 TraesCS2A01G167100 chrUn 111063239 111064222 983 False 863.000000 863 82.644000 2795 3777 1 chrUn.!!$F1 982
19 TraesCS2A01G167100 chr5A 436324545 436325460 915 True 811.000000 811 83.064000 3769 4673 1 chr5A.!!$R2 904
20 TraesCS2A01G167100 chr7A 573438517 573439464 947 True 706.000000 706 80.417000 3998 4942 1 chr7A.!!$R1 944
21 TraesCS2A01G167100 chr6B 225861179 225861840 661 True 632.000000 632 84.305000 4291 4942 1 chr6B.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 227 0.044092 TGGGGCCAGAGTATGAAGGA 59.956 55.000 4.39 0.00 0.00 3.36 F
1032 1036 0.313672 ACGACGGTACTTTAACGCCA 59.686 50.000 0.00 0.00 44.12 5.69 F
1342 1349 1.135199 GGGTTCATACAGCTCGACGAA 60.135 52.381 0.00 0.00 0.00 3.85 F
1672 1683 1.281925 CCTGGGCCCTGGTGTTCTAT 61.282 60.000 34.27 0.00 0.00 1.98 F
2889 3788 1.202177 CCAACTTTGATTCGATGGCGG 60.202 52.381 0.00 0.00 38.28 6.13 F
3186 4109 0.703488 TGGCCTCATCCATCACCAAA 59.297 50.000 3.32 0.00 0.00 3.28 F
4407 5402 0.315886 TTCTAGCGACTTTGGCACGA 59.684 50.000 0.00 0.00 0.00 4.35 F
4963 6158 0.462789 CCCGTAGCTTACCCGTCAAT 59.537 55.000 0.00 0.00 0.00 2.57 F
5682 6877 0.111253 CAACTGCCCCCACTTCTCTT 59.889 55.000 0.00 0.00 0.00 2.85 F
6510 7706 0.730840 CCGGCCTTTAAAACGGCTAG 59.269 55.000 15.77 11.06 45.57 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1063 0.750850 GGCTTACCTGCTCGGACATA 59.249 55.000 0.00 0.00 36.31 2.29 R
2419 3033 1.001974 CCGTTGGTCACCTTGAGATCA 59.998 52.381 0.00 0.00 0.00 2.92 R
2420 3034 1.002087 ACCGTTGGTCACCTTGAGATC 59.998 52.381 0.00 0.00 0.00 2.75 R
3154 4076 1.280710 TGAGGCCACAACGGATTACAT 59.719 47.619 5.01 0.00 36.56 2.29 R
3717 4655 1.134371 GGGCCTTGGAGACATAGTGAC 60.134 57.143 0.84 0.00 42.32 3.67 R
4963 6158 0.034337 GTAGCTGGAACGTTGGGTCA 59.966 55.000 5.00 0.00 0.00 4.02 R
5423 6618 0.254178 GAGATTTGGAGGCTGAGGCA 59.746 55.000 9.23 0.00 40.87 4.75 R
6776 7974 0.179006 TTTGCCCATTTTGCCCAACC 60.179 50.000 0.00 0.00 0.00 3.77 R
6942 8145 0.472471 AAACATGACGTGTGGGTCCT 59.528 50.000 0.00 0.00 41.14 3.85 R
8091 9309 0.095935 CGTTGACTCGTACGGATCGT 59.904 55.000 16.52 7.72 44.35 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 95 8.442632 AGTCATATTGATTGGTATGTGAACAG 57.557 34.615 0.00 0.00 31.75 3.16
183 186 9.601810 TTAAAGAGATAGGCCTATAGTCATGAA 57.398 33.333 25.49 13.79 0.00 2.57
218 221 4.601406 TTGTTTTATGGGGCCAGAGTAT 57.399 40.909 4.39 0.00 0.00 2.12
219 222 3.897239 TGTTTTATGGGGCCAGAGTATG 58.103 45.455 4.39 0.00 0.00 2.39
220 223 3.525609 TGTTTTATGGGGCCAGAGTATGA 59.474 43.478 4.39 0.00 0.00 2.15
222 225 4.437682 TTTATGGGGCCAGAGTATGAAG 57.562 45.455 4.39 0.00 0.00 3.02
224 227 0.044092 TGGGGCCAGAGTATGAAGGA 59.956 55.000 4.39 0.00 0.00 3.36
225 228 1.345422 TGGGGCCAGAGTATGAAGGAT 60.345 52.381 4.39 0.00 0.00 3.24
426 430 0.915364 AGAGTCAGGGATTCAAGCCC 59.085 55.000 0.92 0.92 46.40 5.19
439 443 1.804151 TCAAGCCCGTGAAATCTTTCG 59.196 47.619 0.00 0.00 40.01 3.46
441 445 2.403252 AGCCCGTGAAATCTTTCGAT 57.597 45.000 0.00 0.00 40.01 3.59
451 455 6.680338 CGTGAAATCTTTCGATCAATCTTGAC 59.320 38.462 0.00 0.00 38.83 3.18
463 467 6.093219 CGATCAATCTTGACAGATCAAAACCT 59.907 38.462 0.00 0.00 44.28 3.50
508 512 2.087646 GTGGATCTTTGGGTCTTGAGC 58.912 52.381 0.00 0.00 0.00 4.26
515 519 3.423154 GGGTCTTGAGCGCCAACG 61.423 66.667 2.29 3.14 44.07 4.10
625 629 7.840489 TGATTTCAAATTCGAAAGACTTTTGC 58.160 30.769 13.72 4.00 40.43 3.68
733 737 0.391661 CACCAGGATTCCTCCACACG 60.392 60.000 0.98 0.00 44.79 4.49
734 738 1.450312 CCAGGATTCCTCCACACGC 60.450 63.158 0.98 0.00 44.79 5.34
747 751 4.406069 CTCCACACGCTGAATAAAACATG 58.594 43.478 0.00 0.00 0.00 3.21
777 781 6.316140 TCCATCCACTGATTTTCGAACATAAG 59.684 38.462 7.06 7.06 0.00 1.73
780 784 7.504924 TCCACTGATTTTCGAACATAAGTTT 57.495 32.000 11.01 0.00 38.30 2.66
948 952 3.981308 GCTAAACGCCCTTCTGCA 58.019 55.556 0.00 0.00 0.00 4.41
951 955 1.202188 GCTAAACGCCCTTCTGCAATC 60.202 52.381 0.00 0.00 0.00 2.67
1008 1012 7.775397 AGGAAAGACAATTGTGATGTTTTTG 57.225 32.000 17.58 0.00 35.85 2.44
1023 1027 3.068024 TGTTTTTGGACTACGACGGTACT 59.932 43.478 0.00 0.00 0.00 2.73
1032 1036 0.313672 ACGACGGTACTTTAACGCCA 59.686 50.000 0.00 0.00 44.12 5.69
1129 1133 8.191446 TGCTACTAGTTAAGATGTCTGAATCAC 58.809 37.037 0.00 0.00 0.00 3.06
1186 1190 3.254060 GCTGTTAGAGAACTTGCGATGA 58.746 45.455 0.00 0.00 36.45 2.92
1188 1192 4.489810 CTGTTAGAGAACTTGCGATGACT 58.510 43.478 0.00 0.00 36.45 3.41
1201 1205 2.987149 GCGATGACTTTCTCGACTTCAA 59.013 45.455 0.00 0.00 37.05 2.69
1236 1240 2.166664 GAGCTGTGACAAGGTACTAGGG 59.833 54.545 0.00 0.00 38.49 3.53
1237 1241 1.405661 GCTGTGACAAGGTACTAGGGC 60.406 57.143 0.00 0.00 38.49 5.19
1243 1247 4.161754 GTGACAAGGTACTAGGGCAGTAAT 59.838 45.833 0.00 0.00 41.45 1.89
1244 1248 4.161565 TGACAAGGTACTAGGGCAGTAATG 59.838 45.833 0.00 0.00 41.45 1.90
1254 1258 7.380423 ACTAGGGCAGTAATGAATCTACAAT 57.620 36.000 0.00 0.00 34.98 2.71
1255 1259 7.806180 ACTAGGGCAGTAATGAATCTACAATT 58.194 34.615 0.00 0.00 34.98 2.32
1257 1261 9.778741 CTAGGGCAGTAATGAATCTACAATTTA 57.221 33.333 0.00 0.00 0.00 1.40
1258 1262 8.682936 AGGGCAGTAATGAATCTACAATTTAG 57.317 34.615 0.00 0.00 0.00 1.85
1318 1325 2.424601 GCTTTGCTATCATGTTCAGGCA 59.575 45.455 0.00 0.00 0.00 4.75
1342 1349 1.135199 GGGTTCATACAGCTCGACGAA 60.135 52.381 0.00 0.00 0.00 3.85
1402 1409 5.834204 ACTGGTAAGTCACTGTCTACTCTTT 59.166 40.000 0.00 0.00 26.77 2.52
1420 1427 9.367444 CTACTCTTTCAATACCGAAATGTAGTT 57.633 33.333 2.26 0.00 37.24 2.24
1421 1428 8.252964 ACTCTTTCAATACCGAAATGTAGTTC 57.747 34.615 0.00 0.00 34.50 3.01
1492 1503 9.944376 ATACATTCAGCCATACGAGTTAATTAT 57.056 29.630 0.00 0.00 0.00 1.28
1496 1507 7.292713 TCAGCCATACGAGTTAATTATACCA 57.707 36.000 0.00 0.00 0.00 3.25
1534 1545 3.062234 GCAGCGAACTAACAGAACCATAC 59.938 47.826 0.00 0.00 0.00 2.39
1612 1623 7.581213 TGATGCAATTTCCGTTAATCCTAAT 57.419 32.000 0.00 0.00 0.00 1.73
1672 1683 1.281925 CCTGGGCCCTGGTGTTCTAT 61.282 60.000 34.27 0.00 0.00 1.98
1686 1697 7.420214 CCTGGTGTTCTATCTATGTATGGGTTT 60.420 40.741 0.00 0.00 0.00 3.27
1697 1708 7.402054 TCTATGTATGGGTTTCATTTGTCAGT 58.598 34.615 0.00 0.00 37.30 3.41
1698 1709 5.957842 TGTATGGGTTTCATTTGTCAGTC 57.042 39.130 0.00 0.00 37.30 3.51
1699 1710 4.454161 TGTATGGGTTTCATTTGTCAGTCG 59.546 41.667 0.00 0.00 37.30 4.18
1700 1711 2.226330 TGGGTTTCATTTGTCAGTCGG 58.774 47.619 0.00 0.00 0.00 4.79
1701 1712 2.158740 TGGGTTTCATTTGTCAGTCGGA 60.159 45.455 0.00 0.00 0.00 4.55
1702 1713 5.578853 ATGGGTTTCATTTGTCAGTCGGAC 61.579 45.833 0.00 0.00 38.88 4.79
1703 1714 8.647104 TATGGGTTTCATTTGTCAGTCGGACA 62.647 42.308 11.27 1.27 44.42 4.02
1715 1726 6.814076 GTCAGTCGGACAGATAAATTACTG 57.186 41.667 11.27 0.00 46.19 2.74
1717 1728 7.478322 GTCAGTCGGACAGATAAATTACTGTA 58.522 38.462 11.27 0.00 45.54 2.74
1913 1924 8.018677 AGTCTGTGTATGATTTTGTTAGTTCG 57.981 34.615 0.00 0.00 0.00 3.95
1914 1925 6.736853 GTCTGTGTATGATTTTGTTAGTTCGC 59.263 38.462 0.00 0.00 0.00 4.70
1915 1926 6.649141 TCTGTGTATGATTTTGTTAGTTCGCT 59.351 34.615 0.00 0.00 0.00 4.93
1916 1927 7.815549 TCTGTGTATGATTTTGTTAGTTCGCTA 59.184 33.333 0.00 0.00 0.00 4.26
1917 1928 8.487313 TGTGTATGATTTTGTTAGTTCGCTAT 57.513 30.769 0.00 0.00 0.00 2.97
1918 1929 9.589111 TGTGTATGATTTTGTTAGTTCGCTATA 57.411 29.630 0.00 0.00 0.00 1.31
1923 1934 9.988350 ATGATTTTGTTAGTTCGCTATAAGTTG 57.012 29.630 0.00 0.00 0.00 3.16
1924 1935 8.995220 TGATTTTGTTAGTTCGCTATAAGTTGT 58.005 29.630 0.00 0.00 0.00 3.32
1925 1936 9.821662 GATTTTGTTAGTTCGCTATAAGTTGTT 57.178 29.630 0.00 0.00 0.00 2.83
1926 1937 8.996988 TTTTGTTAGTTCGCTATAAGTTGTTG 57.003 30.769 0.00 0.00 0.00 3.33
1927 1938 7.718272 TTGTTAGTTCGCTATAAGTTGTTGT 57.282 32.000 0.00 0.00 0.00 3.32
1928 1939 8.815141 TTGTTAGTTCGCTATAAGTTGTTGTA 57.185 30.769 0.00 0.00 0.00 2.41
1929 1940 8.231304 TGTTAGTTCGCTATAAGTTGTTGTAC 57.769 34.615 0.00 0.00 0.00 2.90
1930 1941 8.084073 TGTTAGTTCGCTATAAGTTGTTGTACT 58.916 33.333 0.00 0.00 0.00 2.73
1931 1942 6.946229 AGTTCGCTATAAGTTGTTGTACTG 57.054 37.500 0.00 0.00 0.00 2.74
1932 1943 5.347907 AGTTCGCTATAAGTTGTTGTACTGC 59.652 40.000 0.00 0.00 0.00 4.40
1933 1944 4.811908 TCGCTATAAGTTGTTGTACTGCA 58.188 39.130 0.00 0.00 0.00 4.41
1934 1945 5.416083 TCGCTATAAGTTGTTGTACTGCAT 58.584 37.500 0.00 0.00 0.00 3.96
1935 1946 6.566141 TCGCTATAAGTTGTTGTACTGCATA 58.434 36.000 0.00 0.00 0.00 3.14
1936 1947 7.207383 TCGCTATAAGTTGTTGTACTGCATAT 58.793 34.615 0.00 0.00 0.00 1.78
2008 2622 4.575885 TGCTTGTCTTTAACGCTCCTAAT 58.424 39.130 0.00 0.00 0.00 1.73
2074 2688 4.569564 CCAACCTAACAGCGAGTATTTACC 59.430 45.833 0.00 0.00 0.00 2.85
2076 2690 3.181483 ACCTAACAGCGAGTATTTACCGG 60.181 47.826 0.00 0.00 0.00 5.28
2089 2703 5.837438 AGTATTTACCGGTAATAGCTGAGGT 59.163 40.000 27.03 8.04 35.91 3.85
2090 2704 7.006509 AGTATTTACCGGTAATAGCTGAGGTA 58.993 38.462 27.03 9.07 33.58 3.08
2237 2851 1.412343 GGTGCCAGTGTGGAAAACAAT 59.588 47.619 0.00 0.00 40.96 2.71
2292 2906 2.882137 CGCAGGGAAAAGGTAAAACTGA 59.118 45.455 0.00 0.00 0.00 3.41
2400 3014 6.952935 ACTTAAGAACATCGTGATGAGAAC 57.047 37.500 16.33 4.98 41.20 3.01
2419 3033 5.934781 AGAACTGTGACAGAAGAATTTCCT 58.065 37.500 20.97 0.00 35.18 3.36
2420 3034 5.762218 AGAACTGTGACAGAAGAATTTCCTG 59.238 40.000 20.97 0.00 35.18 3.86
2453 3067 4.575645 TGACCAACGGTAAAAAGGTAAGTG 59.424 41.667 0.00 0.00 35.25 3.16
2575 3189 8.940768 TTTTTCAAGAAAAAGATACCCACAAG 57.059 30.769 14.74 0.00 43.08 3.16
2576 3190 7.654022 TTTCAAGAAAAAGATACCCACAAGT 57.346 32.000 0.00 0.00 0.00 3.16
2577 3191 6.877611 TCAAGAAAAAGATACCCACAAGTC 57.122 37.500 0.00 0.00 0.00 3.01
2578 3192 6.601332 TCAAGAAAAAGATACCCACAAGTCT 58.399 36.000 0.00 0.00 0.00 3.24
2579 3193 7.741785 TCAAGAAAAAGATACCCACAAGTCTA 58.258 34.615 0.00 0.00 0.00 2.59
2580 3194 7.878127 TCAAGAAAAAGATACCCACAAGTCTAG 59.122 37.037 0.00 0.00 0.00 2.43
2581 3195 6.712276 AGAAAAAGATACCCACAAGTCTAGG 58.288 40.000 0.00 0.00 0.00 3.02
2582 3196 6.500751 AGAAAAAGATACCCACAAGTCTAGGA 59.499 38.462 0.00 0.00 0.00 2.94
2583 3197 5.678955 AAAGATACCCACAAGTCTAGGAC 57.321 43.478 0.00 0.00 0.00 3.85
2584 3198 4.332683 AGATACCCACAAGTCTAGGACA 57.667 45.455 0.52 0.00 34.60 4.02
2585 3199 4.684724 AGATACCCACAAGTCTAGGACAA 58.315 43.478 0.52 0.00 34.60 3.18
2586 3200 5.091552 AGATACCCACAAGTCTAGGACAAA 58.908 41.667 0.52 0.00 34.60 2.83
2587 3201 3.771577 ACCCACAAGTCTAGGACAAAG 57.228 47.619 0.52 0.00 34.60 2.77
2588 3202 3.046374 ACCCACAAGTCTAGGACAAAGT 58.954 45.455 0.52 0.00 34.60 2.66
2589 3203 4.228824 ACCCACAAGTCTAGGACAAAGTA 58.771 43.478 0.52 0.00 34.60 2.24
2590 3204 4.283722 ACCCACAAGTCTAGGACAAAGTAG 59.716 45.833 0.52 0.00 34.60 2.57
2591 3205 4.283722 CCCACAAGTCTAGGACAAAGTAGT 59.716 45.833 0.52 0.00 34.60 2.73
2592 3206 5.230942 CCACAAGTCTAGGACAAAGTAGTG 58.769 45.833 0.52 0.00 34.60 2.74
2593 3207 5.010719 CCACAAGTCTAGGACAAAGTAGTGA 59.989 44.000 0.00 0.00 34.60 3.41
2594 3208 6.295349 CCACAAGTCTAGGACAAAGTAGTGAT 60.295 42.308 0.00 0.00 34.60 3.06
2595 3209 6.587990 CACAAGTCTAGGACAAAGTAGTGATG 59.412 42.308 0.52 0.00 34.60 3.07
2596 3210 5.923733 AGTCTAGGACAAAGTAGTGATGG 57.076 43.478 0.52 0.00 34.60 3.51
2597 3211 5.334421 AGTCTAGGACAAAGTAGTGATGGT 58.666 41.667 0.52 0.00 34.60 3.55
2598 3212 6.491383 AGTCTAGGACAAAGTAGTGATGGTA 58.509 40.000 0.52 0.00 34.60 3.25
2599 3213 6.603997 AGTCTAGGACAAAGTAGTGATGGTAG 59.396 42.308 0.52 0.00 34.60 3.18
2600 3214 6.377712 GTCTAGGACAAAGTAGTGATGGTAGT 59.622 42.308 0.00 0.00 32.09 2.73
2601 3215 5.662674 AGGACAAAGTAGTGATGGTAGTC 57.337 43.478 0.00 0.00 0.00 2.59
2602 3216 5.084519 AGGACAAAGTAGTGATGGTAGTCA 58.915 41.667 0.00 0.00 0.00 3.41
2603 3217 5.047235 AGGACAAAGTAGTGATGGTAGTCAC 60.047 44.000 0.00 0.00 46.90 3.67
2678 3292 3.904136 CAAACAAGTTGGAGTGGCTAG 57.096 47.619 7.96 0.00 33.18 3.42
2679 3293 3.476552 CAAACAAGTTGGAGTGGCTAGA 58.523 45.455 7.96 0.00 33.18 2.43
2680 3294 3.409026 AACAAGTTGGAGTGGCTAGAG 57.591 47.619 7.96 0.00 0.00 2.43
2681 3295 2.330216 ACAAGTTGGAGTGGCTAGAGT 58.670 47.619 7.96 0.00 0.00 3.24
2682 3296 2.706190 ACAAGTTGGAGTGGCTAGAGTT 59.294 45.455 7.96 0.00 0.00 3.01
2683 3297 3.070018 CAAGTTGGAGTGGCTAGAGTTG 58.930 50.000 0.00 0.00 0.00 3.16
2684 3298 2.609747 AGTTGGAGTGGCTAGAGTTGA 58.390 47.619 0.00 0.00 0.00 3.18
2685 3299 2.972713 AGTTGGAGTGGCTAGAGTTGAA 59.027 45.455 0.00 0.00 0.00 2.69
2686 3300 3.391296 AGTTGGAGTGGCTAGAGTTGAAA 59.609 43.478 0.00 0.00 0.00 2.69
2687 3301 3.402628 TGGAGTGGCTAGAGTTGAAAC 57.597 47.619 0.00 0.00 0.00 2.78
2688 3302 2.038557 TGGAGTGGCTAGAGTTGAAACC 59.961 50.000 0.00 0.00 0.00 3.27
2689 3303 2.615747 GGAGTGGCTAGAGTTGAAACCC 60.616 54.545 0.00 0.00 0.00 4.11
2690 3304 2.038557 GAGTGGCTAGAGTTGAAACCCA 59.961 50.000 0.00 0.00 0.00 4.51
2691 3305 2.644798 AGTGGCTAGAGTTGAAACCCAT 59.355 45.455 0.00 0.00 0.00 4.00
2692 3306 3.844211 AGTGGCTAGAGTTGAAACCCATA 59.156 43.478 0.00 0.00 0.00 2.74
2694 3308 4.636206 GTGGCTAGAGTTGAAACCCATAAG 59.364 45.833 0.00 0.00 0.00 1.73
2695 3309 4.534500 TGGCTAGAGTTGAAACCCATAAGA 59.466 41.667 0.00 0.00 0.00 2.10
2697 3311 5.760743 GGCTAGAGTTGAAACCCATAAGATC 59.239 44.000 0.00 0.00 0.00 2.75
2742 3637 1.336440 TGTTGGACATGTCGCCTTTTG 59.664 47.619 19.33 0.00 0.00 2.44
2889 3788 1.202177 CCAACTTTGATTCGATGGCGG 60.202 52.381 0.00 0.00 38.28 6.13
3004 3915 4.366267 CTCCTCCCCATGCCTAATAGTAT 58.634 47.826 0.00 0.00 0.00 2.12
3012 3923 6.068010 CCCATGCCTAATAGTATGAAAACCA 58.932 40.000 4.11 0.00 0.00 3.67
3090 4002 3.461061 TGTCTTCACAGCTCTGACTTTG 58.539 45.455 3.60 0.00 0.00 2.77
3154 4076 3.264193 GCATACACCATGGGATATCTCCA 59.736 47.826 18.09 13.34 44.08 3.86
3186 4109 0.703488 TGGCCTCATCCATCACCAAA 59.297 50.000 3.32 0.00 0.00 3.28
3187 4110 1.341285 TGGCCTCATCCATCACCAAAG 60.341 52.381 3.32 0.00 0.00 2.77
3189 4112 2.621407 GGCCTCATCCATCACCAAAGAA 60.621 50.000 0.00 0.00 0.00 2.52
3227 4157 3.368571 GCTGACCCTTGGTGCAGC 61.369 66.667 9.47 9.47 43.53 5.25
3269 4200 7.721399 AGTCATCAGTTTCTCCATAACTTGTTT 59.279 33.333 0.00 0.00 33.73 2.83
3277 4208 9.048446 GTTTCTCCATAACTTGTTTGTACACTA 57.952 33.333 0.00 0.00 32.98 2.74
3511 4442 6.825610 AGGCATGAAACCAAACTGATTTTTA 58.174 32.000 0.00 0.00 0.00 1.52
3620 4555 2.097110 AGTACACCTCTGAACACCCA 57.903 50.000 0.00 0.00 0.00 4.51
3658 4595 6.931790 TTGGTACTAATATACCCCGCATAA 57.068 37.500 0.00 0.00 43.62 1.90
3660 4597 6.880484 TGGTACTAATATACCCCGCATAATG 58.120 40.000 0.00 0.00 43.62 1.90
3666 4604 2.983907 TACCCCGCATAATGTTTCGA 57.016 45.000 0.00 0.00 0.00 3.71
3717 4655 9.774742 GGTTGAAAAGCTTATTTACTCATACTG 57.225 33.333 0.00 0.00 42.05 2.74
3741 4679 1.048724 TATGTCTCCAAGGCCCCTCG 61.049 60.000 0.00 0.00 0.00 4.63
3781 4756 0.846427 TCAGGCCCCTGACCTCAAAT 60.846 55.000 12.86 0.00 46.80 2.32
3890 4870 2.424557 TCTTGTCGAAGTACTCTCGCT 58.575 47.619 17.28 0.00 0.00 4.93
3947 4927 2.484241 CGATCTGCACCCATCTTGATGA 60.484 50.000 11.76 0.00 0.00 2.92
4109 5091 5.957842 TGCAGACTTATTTGTTACCTTGG 57.042 39.130 0.00 0.00 0.00 3.61
4222 5213 8.005388 TCCACTACTAGGTATCTTTAGCTTCAT 58.995 37.037 0.00 0.00 37.37 2.57
4407 5402 0.315886 TTCTAGCGACTTTGGCACGA 59.684 50.000 0.00 0.00 0.00 4.35
4622 5637 8.438676 AGTAACAATCATGTCATAGGCTAAAC 57.561 34.615 0.00 0.66 39.40 2.01
4831 5868 1.073199 GCCTACTTGCGGGGCATAT 59.927 57.895 0.00 0.00 44.69 1.78
4923 5973 3.276857 TGACGTCTACCACTCCATACTC 58.723 50.000 17.92 0.00 0.00 2.59
4938 5988 3.182967 CATACTCGAGGCTCTTGTTGAC 58.817 50.000 18.41 0.00 0.00 3.18
4962 6157 0.611618 TCCCGTAGCTTACCCGTCAA 60.612 55.000 0.00 0.00 0.00 3.18
4963 6158 0.462789 CCCGTAGCTTACCCGTCAAT 59.537 55.000 0.00 0.00 0.00 2.57
5036 6231 1.159285 TACCGTTCACACTCGTCGAT 58.841 50.000 0.00 0.00 0.00 3.59
5044 6239 4.168922 TCACACTCGTCGATACAAATGT 57.831 40.909 0.00 0.00 0.00 2.71
5063 6258 3.565307 TGTGAAGACCCTTGCTCATTTT 58.435 40.909 0.00 0.00 0.00 1.82
5067 6262 4.037923 TGAAGACCCTTGCTCATTTTTCAC 59.962 41.667 0.00 0.00 0.00 3.18
5070 6265 5.385198 AGACCCTTGCTCATTTTTCACTAA 58.615 37.500 0.00 0.00 0.00 2.24
5152 6347 1.372582 TCCACATCAAGATTCAGCGC 58.627 50.000 0.00 0.00 0.00 5.92
5195 6390 5.009631 CCTGATCCTTGTCCATTTAACACA 58.990 41.667 0.00 0.00 0.00 3.72
5207 6402 4.533222 CATTTAACACAACACCCGAGTTC 58.467 43.478 0.00 0.00 0.00 3.01
5236 6431 3.617263 GTCATGTTGCTAAGAGGGTTACG 59.383 47.826 0.00 0.00 0.00 3.18
5247 6442 2.281692 GGTTACGCCCCAACGGTT 60.282 61.111 0.00 0.00 37.37 4.44
5303 6498 3.560068 AGTTTTGACGTTAGCTCACCAAG 59.440 43.478 0.00 0.00 0.00 3.61
5393 6588 1.003580 CCGGGTCCCCATCATTCATAG 59.996 57.143 1.00 0.00 35.37 2.23
5439 6634 2.014010 TTTTGCCTCAGCCTCCAAAT 57.986 45.000 0.00 0.00 38.69 2.32
5443 6638 0.813210 GCCTCAGCCTCCAAATCTCG 60.813 60.000 0.00 0.00 0.00 4.04
5495 6690 2.287009 GGTCTCCAACTCAAACAAAGCG 60.287 50.000 0.00 0.00 0.00 4.68
5552 6747 4.435970 CCTAACCGGCCCAACCCC 62.436 72.222 0.00 0.00 33.26 4.95
5553 6748 4.435970 CTAACCGGCCCAACCCCC 62.436 72.222 0.00 0.00 33.26 5.40
5561 6756 2.372074 GCCCAACCCCCGATGTCTA 61.372 63.158 0.00 0.00 0.00 2.59
5664 6859 2.156917 AGAAGACGACATGTACCGACA 58.843 47.619 13.28 0.00 40.72 4.35
5682 6877 0.111253 CAACTGCCCCCACTTCTCTT 59.889 55.000 0.00 0.00 0.00 2.85
5710 6905 2.143925 GAGCTTGTCCCGTATTATGCC 58.856 52.381 0.00 0.00 0.00 4.40
5719 6914 4.992951 GTCCCGTATTATGCCGAACTATTT 59.007 41.667 0.00 0.00 0.00 1.40
5735 6930 7.362229 CCGAACTATTTGGTGTATTTTGGCTAA 60.362 37.037 0.00 0.00 0.00 3.09
5736 6931 8.024285 CGAACTATTTGGTGTATTTTGGCTAAA 58.976 33.333 0.00 0.00 0.00 1.85
5870 7065 3.759086 TGTAGTGCAACACTTGACCAAAA 59.241 39.130 5.44 0.00 42.59 2.44
5896 7091 7.559590 AGTTGATTAAGATGGACTTGCATAC 57.440 36.000 0.00 0.00 39.38 2.39
5931 7126 7.678837 TCAAACTTGGATTTTTATTCTGCCAT 58.321 30.769 0.00 0.00 0.00 4.40
5999 7194 6.486993 AGAGAAATAACTCCAACTGGTTGAAC 59.513 38.462 14.17 0.00 40.31 3.18
6000 7195 6.365520 AGAAATAACTCCAACTGGTTGAACT 58.634 36.000 14.17 0.33 42.93 3.01
6174 7369 9.249457 CCAGACTTTTTAGGACTTCAAAATTTC 57.751 33.333 0.00 0.00 0.00 2.17
6234 7429 7.255451 CCAACAATTAGAACAGCTAGGAAACAA 60.255 37.037 0.00 0.00 0.00 2.83
6238 7433 1.813178 GAACAGCTAGGAAACAAGGGC 59.187 52.381 0.00 0.00 0.00 5.19
6239 7434 1.068121 ACAGCTAGGAAACAAGGGCT 58.932 50.000 0.00 0.00 0.00 5.19
6240 7435 1.457346 CAGCTAGGAAACAAGGGCTG 58.543 55.000 0.00 0.00 40.52 4.85
6243 7438 2.108250 AGCTAGGAAACAAGGGCTGAAA 59.892 45.455 0.00 0.00 0.00 2.69
6246 7441 4.021104 GCTAGGAAACAAGGGCTGAAATTT 60.021 41.667 0.00 0.00 0.00 1.82
6247 7442 5.511373 GCTAGGAAACAAGGGCTGAAATTTT 60.511 40.000 0.00 0.00 0.00 1.82
6248 7443 4.960938 AGGAAACAAGGGCTGAAATTTTC 58.039 39.130 2.05 2.05 0.00 2.29
6249 7444 4.065088 GGAAACAAGGGCTGAAATTTTCC 58.935 43.478 6.68 0.00 32.41 3.13
6250 7445 3.769739 AACAAGGGCTGAAATTTTCCC 57.230 42.857 13.29 13.29 39.05 3.97
6251 7446 2.688477 ACAAGGGCTGAAATTTTCCCA 58.312 42.857 19.73 3.20 41.22 4.37
6252 7447 2.634453 ACAAGGGCTGAAATTTTCCCAG 59.366 45.455 19.73 11.98 41.22 4.45
6253 7448 2.899256 CAAGGGCTGAAATTTTCCCAGA 59.101 45.455 19.73 0.00 41.22 3.86
6254 7449 2.529632 AGGGCTGAAATTTTCCCAGAC 58.470 47.619 19.73 12.68 41.22 3.51
6255 7450 2.110721 AGGGCTGAAATTTTCCCAGACT 59.889 45.455 19.73 10.19 41.22 3.24
6256 7451 3.333680 AGGGCTGAAATTTTCCCAGACTA 59.666 43.478 19.73 0.00 41.22 2.59
6257 7452 4.086457 GGGCTGAAATTTTCCCAGACTAA 58.914 43.478 15.26 0.00 38.62 2.24
6258 7453 4.711846 GGGCTGAAATTTTCCCAGACTAAT 59.288 41.667 15.26 0.00 38.62 1.73
6259 7454 5.163509 GGGCTGAAATTTTCCCAGACTAATC 60.164 44.000 15.26 0.00 38.62 1.75
6260 7455 5.418840 GGCTGAAATTTTCCCAGACTAATCA 59.581 40.000 9.03 0.00 33.31 2.57
6261 7456 6.325596 GCTGAAATTTTCCCAGACTAATCAC 58.674 40.000 9.03 0.00 0.00 3.06
6262 7457 6.151817 GCTGAAATTTTCCCAGACTAATCACT 59.848 38.462 9.03 0.00 0.00 3.41
6263 7458 7.452880 TGAAATTTTCCCAGACTAATCACTG 57.547 36.000 6.68 0.00 0.00 3.66
6264 7459 7.230747 TGAAATTTTCCCAGACTAATCACTGA 58.769 34.615 6.68 0.00 36.38 3.41
6265 7460 7.723616 TGAAATTTTCCCAGACTAATCACTGAA 59.276 33.333 6.68 0.00 36.38 3.02
6266 7461 8.655935 AAATTTTCCCAGACTAATCACTGAAT 57.344 30.769 0.00 0.00 36.38 2.57
6267 7462 9.753674 AAATTTTCCCAGACTAATCACTGAATA 57.246 29.630 0.00 0.00 36.38 1.75
6268 7463 9.927081 AATTTTCCCAGACTAATCACTGAATAT 57.073 29.630 0.00 0.00 36.38 1.28
6269 7464 8.737168 TTTTCCCAGACTAATCACTGAATATG 57.263 34.615 0.00 0.00 36.38 1.78
6270 7465 7.437713 TTCCCAGACTAATCACTGAATATGT 57.562 36.000 0.00 0.00 36.38 2.29
6271 7466 8.547481 TTCCCAGACTAATCACTGAATATGTA 57.453 34.615 0.00 0.00 36.38 2.29
6272 7467 8.727100 TCCCAGACTAATCACTGAATATGTAT 57.273 34.615 0.00 0.00 36.38 2.29
6273 7468 9.159254 TCCCAGACTAATCACTGAATATGTATT 57.841 33.333 0.00 0.00 36.38 1.89
6274 7469 9.212641 CCCAGACTAATCACTGAATATGTATTG 57.787 37.037 0.00 0.00 36.38 1.90
6275 7470 9.987272 CCAGACTAATCACTGAATATGTATTGA 57.013 33.333 0.00 0.00 36.38 2.57
6333 7528 7.754475 ACTTTGACATTTTGAAACAAATTTGGC 59.246 29.630 21.74 11.21 31.69 4.52
6346 7541 5.124645 ACAAATTTGGCTGAATCTTGCAAA 58.875 33.333 21.74 0.00 0.00 3.68
6347 7542 5.589452 ACAAATTTGGCTGAATCTTGCAAAA 59.411 32.000 21.74 4.49 36.66 2.44
6351 7546 5.676532 TTGGCTGAATCTTGCAAAAATTG 57.323 34.783 10.55 0.00 0.00 2.32
6399 7594 3.506067 AGGGCTAAAACGTTTCCAGATTG 59.494 43.478 15.01 0.39 0.00 2.67
6449 7644 7.784633 TGAAATTTTCCAGACCATTTTGAAC 57.215 32.000 6.68 0.00 0.00 3.18
6452 7647 8.750515 AAATTTTCCAGACCATTTTGAACAAT 57.249 26.923 0.00 0.00 0.00 2.71
6455 7650 7.551035 TTTCCAGACCATTTTGAACAATTTG 57.449 32.000 0.00 0.00 0.00 2.32
6484 7679 5.643664 TGAATGAAATTTGGCTGAATCTCG 58.356 37.500 0.00 0.00 36.07 4.04
6493 7688 1.272781 GCTGAATCTCGAACTGTCCG 58.727 55.000 0.00 0.00 0.00 4.79
6510 7706 0.730840 CCGGCCTTTAAAACGGCTAG 59.269 55.000 15.77 11.06 45.57 3.42
6662 7858 2.818751 AATAGGCCGAAACATTCCCA 57.181 45.000 0.00 0.00 0.00 4.37
6672 7868 6.048509 GCCGAAACATTCCCAAATTTATCAT 58.951 36.000 0.00 0.00 0.00 2.45
6744 7940 7.443879 ACTTTGAATGTTTGAAACAAGTTTGGT 59.556 29.630 15.31 7.80 45.86 3.67
6793 7991 2.876945 CGGTTGGGCAAAATGGGCA 61.877 57.895 0.00 0.00 34.52 5.36
6900 8098 7.604164 CAGTCAAGTTGGCTTAATCTTAGAAGA 59.396 37.037 7.40 0.00 34.82 2.87
6942 8145 6.729690 AAAATCATTTTTCTGTGACTCCCA 57.270 33.333 0.00 0.00 28.82 4.37
6951 8154 1.841556 GTGACTCCCAGGACCCACA 60.842 63.158 8.19 0.00 0.00 4.17
6980 8183 7.980662 TCATGTTTATCATTAAGTGGCCAATTG 59.019 33.333 27.93 12.86 34.09 2.32
7026 8229 7.718753 TGTTACTATACTTAGTCCTAGACTGGC 59.281 40.741 7.51 0.00 43.30 4.85
7167 8371 2.711922 CGAGAGGTTCGTCCAGGGG 61.712 68.421 0.00 0.00 44.27 4.79
7199 8403 0.683504 AGGGAGACGCCGTCAAGTAT 60.684 55.000 20.65 0.00 37.63 2.12
7355 8559 9.305925 GACCTAATGGATTTAAAGCTTCATTTG 57.694 33.333 12.40 10.73 37.04 2.32
7358 8562 9.874205 CTAATGGATTTAAAGCTTCATTTGGAA 57.126 29.630 12.40 0.00 0.00 3.53
7404 8608 2.847327 TTCAGGTGCTTTCTGAGGAG 57.153 50.000 0.00 0.00 41.57 3.69
7416 8620 0.257039 CTGAGGAGGGTGGATTTGGG 59.743 60.000 0.00 0.00 0.00 4.12
7510 8714 0.531532 AGGCTCACGAGTATGCATGC 60.532 55.000 11.82 11.82 0.00 4.06
7520 8730 6.093357 TCACGAGTATGCATGCAATCTTTTTA 59.907 34.615 26.68 7.71 0.00 1.52
7581 8791 4.899457 TGTTCTCAGGTGAAAGAGTTCCTA 59.101 41.667 0.00 0.00 32.28 2.94
7659 8869 3.830192 CAGCCCATTTGGAGCGGC 61.830 66.667 0.00 0.00 41.96 6.53
7663 8873 3.746889 CCATTTGGAGCGGCGCAA 61.747 61.111 35.02 19.85 37.39 4.85
7664 8874 2.257980 CATTTGGAGCGGCGCAAA 59.742 55.556 35.02 24.89 0.00 3.68
7665 8875 1.153784 CATTTGGAGCGGCGCAAAT 60.154 52.632 35.02 25.95 31.70 2.32
7666 8876 0.100325 CATTTGGAGCGGCGCAAATA 59.900 50.000 35.02 15.12 30.95 1.40
7667 8877 0.814457 ATTTGGAGCGGCGCAAATAA 59.186 45.000 35.02 21.44 30.60 1.40
7668 8878 0.170116 TTTGGAGCGGCGCAAATAAG 59.830 50.000 35.02 0.00 0.00 1.73
7759 8971 7.255977 GCTGGTGATGGAGAAGTTGACTATATA 60.256 40.741 0.00 0.00 0.00 0.86
7851 9065 2.600475 CGTTACAAAGCGCCGTGGT 61.600 57.895 2.29 0.00 0.00 4.16
7870 9084 4.254709 AGCAGCACCGTTGGCAGA 62.255 61.111 0.00 0.00 0.00 4.26
7953 9171 1.788229 TTGGAGGAGGATATCGCACA 58.212 50.000 0.00 0.00 0.00 4.57
7954 9172 1.788229 TGGAGGAGGATATCGCACAA 58.212 50.000 0.00 0.00 0.00 3.33
7955 9173 1.688735 TGGAGGAGGATATCGCACAAG 59.311 52.381 0.00 0.00 0.00 3.16
7956 9174 1.001406 GGAGGAGGATATCGCACAAGG 59.999 57.143 0.00 0.00 0.00 3.61
7957 9175 0.394565 AGGAGGATATCGCACAAGGC 59.605 55.000 0.00 0.00 39.90 4.35
7958 9176 0.603975 GGAGGATATCGCACAAGGCC 60.604 60.000 0.00 0.00 40.31 5.19
7959 9177 0.106708 GAGGATATCGCACAAGGCCA 59.893 55.000 5.01 0.00 40.31 5.36
7960 9178 0.179045 AGGATATCGCACAAGGCCAC 60.179 55.000 5.01 0.00 40.31 5.01
8041 9259 1.353358 ACGGAGTTTTTAGGGGAAGGG 59.647 52.381 0.00 0.00 37.78 3.95
8086 9304 3.362797 CCGCCGCCGCTATCTAGA 61.363 66.667 0.00 0.00 0.00 2.43
8087 9305 2.177038 CGCCGCCGCTATCTAGAG 59.823 66.667 0.00 0.00 0.00 2.43
8088 9306 2.569134 GCCGCCGCTATCTAGAGG 59.431 66.667 0.00 2.90 44.85 3.69
8089 9307 1.972223 GCCGCCGCTATCTAGAGGA 60.972 63.158 10.75 0.00 44.85 3.71
8091 9309 0.959553 CCGCCGCTATCTAGAGGAAA 59.040 55.000 10.75 0.00 44.85 3.13
8092 9310 1.336056 CCGCCGCTATCTAGAGGAAAC 60.336 57.143 10.75 0.00 44.85 2.78
8094 9312 1.607628 GCCGCTATCTAGAGGAAACGA 59.392 52.381 10.75 0.00 44.85 3.85
8201 9426 1.677633 CGGGCCGATTTCCAACCTT 60.678 57.895 24.41 0.00 0.00 3.50
8215 9447 2.043953 CCTTAGGGGCTGTTGGGC 60.044 66.667 0.00 0.00 40.05 5.36
8216 9448 2.616458 CCTTAGGGGCTGTTGGGCT 61.616 63.158 0.00 0.00 40.65 5.19
8217 9449 1.077429 CTTAGGGGCTGTTGGGCTC 60.077 63.158 0.00 0.00 41.85 4.70
8248 9489 6.093633 CCGTTTGGAAGTAATTTTCCTAGGAG 59.906 42.308 12.26 0.00 45.59 3.69
8535 9797 4.730949 AAGAGTAGCCTGTTATTGCGTA 57.269 40.909 0.00 0.00 0.00 4.42
8536 9798 4.939052 AGAGTAGCCTGTTATTGCGTAT 57.061 40.909 0.00 0.00 0.00 3.06
8537 9799 6.401047 AAGAGTAGCCTGTTATTGCGTATA 57.599 37.500 0.00 0.00 0.00 1.47
8538 9800 6.591750 AGAGTAGCCTGTTATTGCGTATAT 57.408 37.500 0.00 0.00 0.00 0.86
8539 9801 7.698506 AGAGTAGCCTGTTATTGCGTATATA 57.301 36.000 0.00 0.00 0.00 0.86
8540 9802 8.294954 AGAGTAGCCTGTTATTGCGTATATAT 57.705 34.615 0.00 0.00 0.00 0.86
8541 9803 8.750298 AGAGTAGCCTGTTATTGCGTATATATT 58.250 33.333 0.00 0.00 0.00 1.28
8542 9804 8.703604 AGTAGCCTGTTATTGCGTATATATTG 57.296 34.615 0.00 0.00 0.00 1.90
8543 9805 6.422776 AGCCTGTTATTGCGTATATATTGC 57.577 37.500 0.00 0.00 0.00 3.56
8544 9806 5.063438 AGCCTGTTATTGCGTATATATTGCG 59.937 40.000 0.00 0.00 0.00 4.85
8545 9807 5.163893 GCCTGTTATTGCGTATATATTGCGT 60.164 40.000 9.90 3.34 0.00 5.24
8623 9896 1.065418 GCCTTAGCAGCTAGGGTTGAA 60.065 52.381 27.00 2.16 35.88 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.363167 TCAAATGCCAAAAATCAGGAAGAT 57.637 33.333 0.00 0.00 39.09 2.40
1 2 5.804944 TCAAATGCCAAAAATCAGGAAGA 57.195 34.783 0.00 0.00 0.00 2.87
93 95 7.829706 AGATACACTCCAAGGGAAATCTTAAAC 59.170 37.037 0.00 0.00 0.00 2.01
183 186 7.310609 CCCCATAAAACAATCTTTGGAGAATGT 60.311 37.037 0.00 0.00 45.63 2.71
218 221 5.829986 TGGAGAATTTCAATGGATCCTTCA 58.170 37.500 14.23 0.00 0.00 3.02
219 222 6.973460 ATGGAGAATTTCAATGGATCCTTC 57.027 37.500 14.23 6.42 0.00 3.46
220 223 7.744678 AAATGGAGAATTTCAATGGATCCTT 57.255 32.000 14.23 3.29 32.85 3.36
222 225 6.764560 CCAAAATGGAGAATTTCAATGGATCC 59.235 38.462 4.20 4.20 40.96 3.36
224 227 6.069847 AGCCAAAATGGAGAATTTCAATGGAT 60.070 34.615 0.00 0.00 40.96 3.41
225 228 5.248934 AGCCAAAATGGAGAATTTCAATGGA 59.751 36.000 0.00 0.00 40.96 3.41
439 443 7.388460 AGGTTTTGATCTGTCAAGATTGATC 57.612 36.000 0.00 0.00 43.48 2.92
441 445 8.868522 AATAGGTTTTGATCTGTCAAGATTGA 57.131 30.769 0.00 0.00 43.48 2.57
463 467 4.658435 TCCCTCTTGCAGCAACCTATAATA 59.342 41.667 2.83 0.00 0.00 0.98
508 512 0.096976 CCAATTAGAGTGCGTTGGCG 59.903 55.000 0.00 0.00 44.10 5.69
515 519 1.455773 GGGCCCCCAATTAGAGTGC 60.456 63.158 12.23 0.00 35.81 4.40
777 781 5.113502 ACAGAAATAGCAACAGCAGAAAC 57.886 39.130 0.00 0.00 0.00 2.78
780 784 5.733676 TGATACAGAAATAGCAACAGCAGA 58.266 37.500 0.00 0.00 0.00 4.26
907 911 9.336171 AGCCTGCAAAAATAAAACATTAGAAAA 57.664 25.926 0.00 0.00 0.00 2.29
951 955 6.094464 TGGCTGTGATATCATCAAAGAACTTG 59.906 38.462 9.02 0.00 45.62 3.16
971 975 0.593128 CTTTCCTTGGACGTTGGCTG 59.407 55.000 0.00 0.00 0.00 4.85
1008 1012 3.417185 CGTTAAAGTACCGTCGTAGTCC 58.583 50.000 0.00 0.00 0.00 3.85
1023 1027 4.271291 GGCTTTTTCACAATTGGCGTTAAA 59.729 37.500 10.83 3.16 0.00 1.52
1032 1036 4.707105 CCCTTTCAGGCTTTTTCACAATT 58.293 39.130 0.00 0.00 32.73 2.32
1059 1063 0.750850 GGCTTACCTGCTCGGACATA 59.249 55.000 0.00 0.00 36.31 2.29
1129 1133 5.163374 GGAGATTTCAAATTGGGGATGAAGG 60.163 44.000 0.00 0.00 0.00 3.46
1186 1190 3.982058 GTGACGATTGAAGTCGAGAAAGT 59.018 43.478 2.01 0.00 44.06 2.66
1188 1192 3.314553 GGTGACGATTGAAGTCGAGAAA 58.685 45.455 2.01 0.00 44.06 2.52
1224 1228 5.353394 TTCATTACTGCCCTAGTACCTTG 57.647 43.478 0.00 0.00 41.48 3.61
1243 1247 7.947890 AGAACCCCAAACTAAATTGTAGATTCA 59.052 33.333 0.00 0.00 0.00 2.57
1244 1248 8.349568 AGAACCCCAAACTAAATTGTAGATTC 57.650 34.615 0.00 0.00 0.00 2.52
1254 1258 8.388656 AGAGATGTATAGAACCCCAAACTAAA 57.611 34.615 0.00 0.00 0.00 1.85
1255 1259 7.989947 AGAGATGTATAGAACCCCAAACTAA 57.010 36.000 0.00 0.00 0.00 2.24
1257 1261 7.989947 TTAGAGATGTATAGAACCCCAAACT 57.010 36.000 0.00 0.00 0.00 2.66
1258 1262 8.044908 TGTTTAGAGATGTATAGAACCCCAAAC 58.955 37.037 0.00 0.00 0.00 2.93
1318 1325 3.335579 GTCGAGCTGTATGAACCCTTTT 58.664 45.455 0.00 0.00 0.00 2.27
1426 1437 6.852908 TGGGGTAATAGAAGCTTCCCTTATAA 59.147 38.462 22.81 0.00 31.57 0.98
1432 1443 3.046374 TCTGGGGTAATAGAAGCTTCCC 58.954 50.000 22.81 15.80 34.68 3.97
1492 1503 5.779922 CTGCAAGTTCTTGTACTACTGGTA 58.220 41.667 13.04 0.00 0.00 3.25
1496 1507 3.005472 TCGCTGCAAGTTCTTGTACTACT 59.995 43.478 13.04 0.00 35.30 2.57
1511 1522 1.202592 TGGTTCTGTTAGTTCGCTGCA 60.203 47.619 0.00 0.00 0.00 4.41
1547 1558 6.987403 AGTTTGTGTACCATTTTTATGGGT 57.013 33.333 8.87 0.00 45.84 4.51
1612 1623 6.662234 AGTTAACAGCTATAGACAGTACACCA 59.338 38.462 8.61 0.00 0.00 4.17
1672 1683 7.402054 ACTGACAAATGAAACCCATACATAGA 58.598 34.615 0.00 0.00 34.45 1.98
1693 1704 6.525578 ACAGTAATTTATCTGTCCGACTGA 57.474 37.500 10.20 10.20 40.28 3.41
1887 1898 9.135843 CGAACTAACAAAATCATACACAGACTA 57.864 33.333 0.00 0.00 0.00 2.59
1888 1899 7.360101 GCGAACTAACAAAATCATACACAGACT 60.360 37.037 0.00 0.00 0.00 3.24
1889 1900 6.736853 GCGAACTAACAAAATCATACACAGAC 59.263 38.462 0.00 0.00 0.00 3.51
1890 1901 6.649141 AGCGAACTAACAAAATCATACACAGA 59.351 34.615 0.00 0.00 0.00 3.41
1891 1902 6.831769 AGCGAACTAACAAAATCATACACAG 58.168 36.000 0.00 0.00 0.00 3.66
1892 1903 6.795098 AGCGAACTAACAAAATCATACACA 57.205 33.333 0.00 0.00 0.00 3.72
1897 1908 9.988350 CAACTTATAGCGAACTAACAAAATCAT 57.012 29.630 0.00 0.00 30.45 2.45
1898 1909 8.995220 ACAACTTATAGCGAACTAACAAAATCA 58.005 29.630 0.00 0.00 30.45 2.57
1899 1910 9.821662 AACAACTTATAGCGAACTAACAAAATC 57.178 29.630 0.00 0.00 30.45 2.17
1900 1911 9.607285 CAACAACTTATAGCGAACTAACAAAAT 57.393 29.630 0.00 0.00 30.45 1.82
1901 1912 8.614346 ACAACAACTTATAGCGAACTAACAAAA 58.386 29.630 0.00 0.00 30.45 2.44
1902 1913 8.145316 ACAACAACTTATAGCGAACTAACAAA 57.855 30.769 0.00 0.00 30.45 2.83
1903 1914 7.718272 ACAACAACTTATAGCGAACTAACAA 57.282 32.000 0.00 0.00 30.45 2.83
1904 1915 8.084073 AGTACAACAACTTATAGCGAACTAACA 58.916 33.333 0.00 0.00 30.45 2.41
1905 1916 8.371053 CAGTACAACAACTTATAGCGAACTAAC 58.629 37.037 0.00 0.00 30.45 2.34
1906 1917 7.062605 GCAGTACAACAACTTATAGCGAACTAA 59.937 37.037 0.00 0.00 30.45 2.24
1907 1918 6.529125 GCAGTACAACAACTTATAGCGAACTA 59.471 38.462 0.00 0.00 0.00 2.24
1908 1919 5.347907 GCAGTACAACAACTTATAGCGAACT 59.652 40.000 0.00 0.00 0.00 3.01
1909 1920 5.119588 TGCAGTACAACAACTTATAGCGAAC 59.880 40.000 0.00 0.00 0.00 3.95
1910 1921 5.231702 TGCAGTACAACAACTTATAGCGAA 58.768 37.500 0.00 0.00 0.00 4.70
1911 1922 4.811908 TGCAGTACAACAACTTATAGCGA 58.188 39.130 0.00 0.00 0.00 4.93
1912 1923 5.718649 ATGCAGTACAACAACTTATAGCG 57.281 39.130 0.00 0.00 0.00 4.26
1913 1924 8.142994 ACATATGCAGTACAACAACTTATAGC 57.857 34.615 1.58 0.00 0.00 2.97
1922 1933 9.104965 GGAGTTAATTACATATGCAGTACAACA 57.895 33.333 1.58 0.00 0.00 3.33
1923 1934 8.557029 GGGAGTTAATTACATATGCAGTACAAC 58.443 37.037 1.58 1.08 0.00 3.32
1924 1935 8.268605 TGGGAGTTAATTACATATGCAGTACAA 58.731 33.333 1.58 0.00 0.00 2.41
1925 1936 7.797062 TGGGAGTTAATTACATATGCAGTACA 58.203 34.615 1.58 0.00 0.00 2.90
1926 1937 8.848474 ATGGGAGTTAATTACATATGCAGTAC 57.152 34.615 1.58 0.00 0.00 2.73
1927 1938 9.938280 GTATGGGAGTTAATTACATATGCAGTA 57.062 33.333 1.58 0.00 0.00 2.74
1928 1939 8.660435 AGTATGGGAGTTAATTACATATGCAGT 58.340 33.333 1.58 0.00 0.00 4.40
1929 1940 9.507329 AAGTATGGGAGTTAATTACATATGCAG 57.493 33.333 1.58 0.00 0.00 4.41
1982 2596 3.003378 GGAGCGTTAAAGACAAGCAAAGT 59.997 43.478 0.00 0.00 0.00 2.66
1986 2600 2.543777 AGGAGCGTTAAAGACAAGCA 57.456 45.000 0.00 0.00 0.00 3.91
1988 2602 7.860872 ACAAAAATTAGGAGCGTTAAAGACAAG 59.139 33.333 0.00 0.00 0.00 3.16
2149 2763 7.389803 TGTGCATGCAGTGTATTAGTATTTT 57.610 32.000 23.41 0.00 0.00 1.82
2192 2806 3.446873 TGATCTCTCTGACAGCCTCTTTC 59.553 47.826 0.00 0.00 0.00 2.62
2237 2851 2.286833 GTGCACAGAAACGCAGAACTTA 59.713 45.455 13.17 0.00 39.20 2.24
2292 2906 7.102993 AGGCAACAATGTTAAAACTTGAGTTT 58.897 30.769 0.00 3.37 45.07 2.66
2400 3014 6.171921 AGATCAGGAAATTCTTCTGTCACAG 58.828 40.000 0.00 0.00 0.00 3.66
2419 3033 1.001974 CCGTTGGTCACCTTGAGATCA 59.998 52.381 0.00 0.00 0.00 2.92
2420 3034 1.002087 ACCGTTGGTCACCTTGAGATC 59.998 52.381 0.00 0.00 0.00 2.75
2453 3067 3.247006 TGTGCGATTTCCTCTAACTCC 57.753 47.619 0.00 0.00 0.00 3.85
2574 3188 5.334421 ACCATCACTACTTTGTCCTAGACT 58.666 41.667 0.00 0.00 33.15 3.24
2575 3189 5.662674 ACCATCACTACTTTGTCCTAGAC 57.337 43.478 0.00 0.00 0.00 2.59
2576 3190 6.491383 ACTACCATCACTACTTTGTCCTAGA 58.509 40.000 0.00 0.00 0.00 2.43
2577 3191 6.377429 TGACTACCATCACTACTTTGTCCTAG 59.623 42.308 0.00 0.00 0.00 3.02
2578 3192 6.152323 GTGACTACCATCACTACTTTGTCCTA 59.848 42.308 0.00 0.00 44.71 2.94
2579 3193 5.047235 GTGACTACCATCACTACTTTGTCCT 60.047 44.000 0.00 0.00 44.71 3.85
2580 3194 5.169295 GTGACTACCATCACTACTTTGTCC 58.831 45.833 0.00 0.00 44.71 4.02
2591 3205 6.663523 TGAGAGAAATAGTGTGACTACCATCA 59.336 38.462 0.00 0.00 32.84 3.07
2592 3206 6.975772 GTGAGAGAAATAGTGTGACTACCATC 59.024 42.308 0.00 0.00 32.84 3.51
2593 3207 6.127310 GGTGAGAGAAATAGTGTGACTACCAT 60.127 42.308 0.00 0.00 32.84 3.55
2594 3208 5.185249 GGTGAGAGAAATAGTGTGACTACCA 59.815 44.000 0.00 0.00 32.84 3.25
2595 3209 5.185249 TGGTGAGAGAAATAGTGTGACTACC 59.815 44.000 0.00 0.00 32.84 3.18
2596 3210 6.268825 TGGTGAGAGAAATAGTGTGACTAC 57.731 41.667 0.00 0.00 32.84 2.73
2597 3211 5.105716 GCTGGTGAGAGAAATAGTGTGACTA 60.106 44.000 0.00 0.00 34.82 2.59
2598 3212 4.322349 GCTGGTGAGAGAAATAGTGTGACT 60.322 45.833 0.00 0.00 0.00 3.41
2599 3213 3.929610 GCTGGTGAGAGAAATAGTGTGAC 59.070 47.826 0.00 0.00 0.00 3.67
2600 3214 3.055819 GGCTGGTGAGAGAAATAGTGTGA 60.056 47.826 0.00 0.00 0.00 3.58
2601 3215 3.265791 GGCTGGTGAGAGAAATAGTGTG 58.734 50.000 0.00 0.00 0.00 3.82
2602 3216 2.906389 TGGCTGGTGAGAGAAATAGTGT 59.094 45.455 0.00 0.00 0.00 3.55
2603 3217 3.055530 AGTGGCTGGTGAGAGAAATAGTG 60.056 47.826 0.00 0.00 0.00 2.74
2604 3218 3.177228 AGTGGCTGGTGAGAGAAATAGT 58.823 45.455 0.00 0.00 0.00 2.12
2605 3219 3.902881 AGTGGCTGGTGAGAGAAATAG 57.097 47.619 0.00 0.00 0.00 1.73
2606 3220 5.755409 TTAAGTGGCTGGTGAGAGAAATA 57.245 39.130 0.00 0.00 0.00 1.40
2632 3246 6.183360 GGACTAAAAGGCTTTGTTGTTGTACT 60.183 38.462 14.19 0.00 0.00 2.73
2675 3289 6.920758 CGAGATCTTATGGGTTTCAACTCTAG 59.079 42.308 0.00 0.00 0.00 2.43
2677 3291 5.187967 ACGAGATCTTATGGGTTTCAACTCT 59.812 40.000 0.00 0.00 0.00 3.24
2678 3292 5.292101 CACGAGATCTTATGGGTTTCAACTC 59.708 44.000 0.00 0.00 0.00 3.01
2679 3293 5.178797 CACGAGATCTTATGGGTTTCAACT 58.821 41.667 0.00 0.00 0.00 3.16
2680 3294 4.201822 GCACGAGATCTTATGGGTTTCAAC 60.202 45.833 0.00 0.00 0.00 3.18
2681 3295 3.938963 GCACGAGATCTTATGGGTTTCAA 59.061 43.478 0.00 0.00 0.00 2.69
2682 3296 3.055458 TGCACGAGATCTTATGGGTTTCA 60.055 43.478 0.00 0.00 0.00 2.69
2683 3297 3.531538 TGCACGAGATCTTATGGGTTTC 58.468 45.455 0.00 0.00 0.00 2.78
2684 3298 3.627395 TGCACGAGATCTTATGGGTTT 57.373 42.857 0.00 0.00 0.00 3.27
2685 3299 3.389329 AGATGCACGAGATCTTATGGGTT 59.611 43.478 0.00 0.00 0.00 4.11
2686 3300 2.968574 AGATGCACGAGATCTTATGGGT 59.031 45.455 0.00 0.00 0.00 4.51
2687 3301 3.674528 AGATGCACGAGATCTTATGGG 57.325 47.619 0.00 0.00 0.00 4.00
2688 3302 5.340010 CAAAGATGCACGAGATCTTATGG 57.660 43.478 0.00 0.00 38.88 2.74
2742 3637 1.402325 GGCGTTGAATGTTGGCTAACC 60.402 52.381 10.73 0.00 35.92 2.85
2791 3690 7.615757 ACAAAAGCTAAAAGGCAGGTTCTATAT 59.384 33.333 0.00 0.00 32.78 0.86
2889 3788 5.809562 GGATGGTGATATCGATGAAGATGTC 59.190 44.000 8.54 0.00 38.65 3.06
3004 3915 4.431416 AGTACATGAGGTGTGGTTTTCA 57.569 40.909 0.00 0.00 42.24 2.69
3012 3923 8.648693 AGAACTAAAACTAAGTACATGAGGTGT 58.351 33.333 0.00 0.00 44.95 4.16
3102 4014 3.253677 GGATGATGTGGTACTAGTCGGAG 59.746 52.174 0.00 0.00 0.00 4.63
3154 4076 1.280710 TGAGGCCACAACGGATTACAT 59.719 47.619 5.01 0.00 36.56 2.29
3227 4157 8.525290 ACTGATGACTTTCCAATAAAATAGGG 57.475 34.615 0.00 0.00 0.00 3.53
3277 4208 8.579850 AGGACATGTACAATAATGTTGTGATT 57.420 30.769 11.55 0.00 41.05 2.57
3511 4442 6.256757 GCTTAAGAAGAATGATAAGCGTGACT 59.743 38.462 6.67 0.00 40.36 3.41
3658 4595 4.320494 GGTCAAACAAGATGCTCGAAACAT 60.320 41.667 0.40 0.40 0.00 2.71
3660 4597 3.555518 GGTCAAACAAGATGCTCGAAAC 58.444 45.455 0.00 0.00 0.00 2.78
3666 4604 4.647424 TTTTTCGGTCAAACAAGATGCT 57.353 36.364 0.00 0.00 0.00 3.79
3705 4643 7.614192 TGGAGACATAGTGACAGTATGAGTAAA 59.386 37.037 29.03 13.46 35.56 2.01
3709 4647 6.456795 TTGGAGACATAGTGACAGTATGAG 57.543 41.667 29.03 10.62 42.32 2.90
3717 4655 1.134371 GGGCCTTGGAGACATAGTGAC 60.134 57.143 0.84 0.00 42.32 3.67
3741 4679 3.644966 TTGTATCCCCATTGAGGTGTC 57.355 47.619 0.00 0.00 34.66 3.67
3781 4756 6.206634 GGTGTTTTGTGTGATGAATCTAGGAA 59.793 38.462 0.00 0.00 0.00 3.36
3890 4870 6.014755 CAGGACAAGGAGATCAAGCATAGATA 60.015 42.308 0.00 0.00 0.00 1.98
3947 4927 4.482990 AGGGATGTCAACCAAGTCAAATT 58.517 39.130 1.08 0.00 0.00 1.82
4222 5213 3.982052 TGGGTTACCAAGGGAAGTAGAAA 59.018 43.478 2.98 0.00 45.87 2.52
4407 5402 3.068165 TCGTATTCATGTCCAGCGAGAAT 59.932 43.478 0.00 0.00 33.82 2.40
4438 5435 2.291153 ACATAAGCTTGTGGTGGCTGAT 60.291 45.455 24.73 0.89 38.91 2.90
4622 5637 3.491792 GGAGAGGATGTCTTAAGCTTCGG 60.492 52.174 0.00 0.00 34.71 4.30
4831 5868 6.485313 ACTTGGTTCTCAATGTTATCAACGAA 59.515 34.615 0.00 0.00 34.45 3.85
4923 5973 0.868406 GTTGGTCAACAAGAGCCTCG 59.132 55.000 8.77 0.00 44.10 4.63
4938 5988 0.177373 GGGTAAGCTACGGGAGTTGG 59.823 60.000 0.00 0.00 43.33 3.77
4962 6157 0.981183 TAGCTGGAACGTTGGGTCAT 59.019 50.000 5.00 0.00 0.00 3.06
4963 6158 0.034337 GTAGCTGGAACGTTGGGTCA 59.966 55.000 5.00 0.00 0.00 4.02
5036 6231 4.072131 GAGCAAGGGTCTTCACATTTGTA 58.928 43.478 0.00 0.00 0.00 2.41
5044 6239 4.037923 GTGAAAAATGAGCAAGGGTCTTCA 59.962 41.667 0.00 0.00 0.00 3.02
5063 6258 3.663995 TCAACGTCCGGATTTAGTGAA 57.336 42.857 7.81 0.00 0.00 3.18
5067 6262 3.489785 GCTACATCAACGTCCGGATTTAG 59.510 47.826 7.81 2.19 30.58 1.85
5070 6265 1.801395 CGCTACATCAACGTCCGGATT 60.801 52.381 7.81 0.00 0.00 3.01
5170 6365 5.123979 GTGTTAAATGGACAAGGATCAGGTC 59.876 44.000 0.00 0.00 0.00 3.85
5195 6390 1.345415 ACGTATTGGAACTCGGGTGTT 59.655 47.619 0.00 0.00 0.00 3.32
5207 6402 4.271049 CCTCTTAGCAACATGACGTATTGG 59.729 45.833 0.00 0.00 0.00 3.16
5236 6431 0.313987 CAGAAGAAAACCGTTGGGGC 59.686 55.000 0.00 0.00 40.62 5.80
5247 6442 4.722526 TGGAGATGAAACCCAGAAGAAA 57.277 40.909 0.00 0.00 0.00 2.52
5303 6498 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
5304 6499 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
5309 6504 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
5382 6577 9.542462 AAGCCAAATTTGAATCTATGAATGATG 57.458 29.630 19.86 0.00 0.00 3.07
5393 6588 5.077134 ACTAGCCAAGCCAAATTTGAATC 57.923 39.130 19.86 8.14 0.00 2.52
5422 6617 0.700564 AGATTTGGAGGCTGAGGCAA 59.299 50.000 9.23 0.00 40.87 4.52
5423 6618 0.254178 GAGATTTGGAGGCTGAGGCA 59.746 55.000 9.23 0.00 40.87 4.75
5424 6619 0.813210 CGAGATTTGGAGGCTGAGGC 60.813 60.000 0.00 0.00 37.82 4.70
5426 6621 0.813210 GCCGAGATTTGGAGGCTGAG 60.813 60.000 0.00 0.00 45.67 3.35
5427 6622 1.221840 GCCGAGATTTGGAGGCTGA 59.778 57.895 0.00 0.00 45.67 4.26
5428 6623 3.819188 GCCGAGATTTGGAGGCTG 58.181 61.111 0.00 0.00 45.67 4.85
5430 6625 2.344917 CTCAAGCCGAGATTTGGAGGC 61.345 57.143 0.00 0.00 45.45 4.70
5495 6690 6.042638 TGGTATCAAGGAGCTCTAATATGC 57.957 41.667 14.64 6.46 0.00 3.14
5552 6747 1.169577 CGAGAGGGGATAGACATCGG 58.830 60.000 0.00 0.00 31.33 4.18
5553 6748 2.186532 TCGAGAGGGGATAGACATCG 57.813 55.000 0.00 0.00 31.33 3.84
5561 6756 1.372245 TGGAGGGATCGAGAGGGGAT 61.372 60.000 0.00 0.00 0.00 3.85
5633 6828 4.694102 GTCTTCTCCGACGCTAGC 57.306 61.111 4.06 4.06 0.00 3.42
5642 6837 1.741706 TCGGTACATGTCGTCTTCTCC 59.258 52.381 0.00 0.00 0.00 3.71
5664 6859 0.402121 GAAGAGAAGTGGGGGCAGTT 59.598 55.000 0.00 0.00 0.00 3.16
5682 6877 1.613630 GGGACAAGCTCCTCAGGGA 60.614 63.158 0.00 0.00 39.39 4.20
5702 6897 8.911918 AATACACCAAATAGTTCGGCATAATA 57.088 30.769 0.00 0.00 0.00 0.98
5710 6905 5.949735 AGCCAAAATACACCAAATAGTTCG 58.050 37.500 0.00 0.00 0.00 3.95
5735 6930 8.528044 TTCAACATAACCTAGGACAAGTTTTT 57.472 30.769 17.98 0.00 0.00 1.94
5736 6931 8.706322 ATTCAACATAACCTAGGACAAGTTTT 57.294 30.769 17.98 0.00 0.00 2.43
5849 7044 4.364415 TTTTGGTCAAGTGTTGCACTAC 57.636 40.909 1.97 0.00 44.62 2.73
5870 7065 9.277783 GTATGCAAGTCCATCTTAATCAACTAT 57.722 33.333 0.00 0.00 34.66 2.12
5931 7126 6.753180 TCAGCACATTTACAAAAGCCATTTA 58.247 32.000 0.00 0.00 0.00 1.40
5946 7141 4.038271 TCTGGGAAATCTTCAGCACATT 57.962 40.909 0.00 0.00 0.00 2.71
5999 7194 7.543947 AGTTTGCAAAGAAATCTGGAAAAAG 57.456 32.000 13.26 0.00 35.10 2.27
6000 7195 7.605691 TCAAGTTTGCAAAGAAATCTGGAAAAA 59.394 29.630 13.26 0.00 35.10 1.94
6040 7235 2.817844 GTTTTGTAAGATCCGGCCAAGT 59.182 45.455 2.24 0.00 0.00 3.16
6150 7345 8.899771 TCGAAATTTTGAAGTCCTAAAAAGTCT 58.100 29.630 5.60 0.00 30.50 3.24
6174 7369 4.519540 AAGATTCACCCAATTTGGTTCG 57.480 40.909 14.26 1.95 36.12 3.95
6234 7429 2.110721 AGTCTGGGAAAATTTCAGCCCT 59.889 45.455 18.89 7.82 41.28 5.19
6238 7433 7.391554 TCAGTGATTAGTCTGGGAAAATTTCAG 59.608 37.037 8.09 0.00 33.13 3.02
6239 7434 7.230747 TCAGTGATTAGTCTGGGAAAATTTCA 58.769 34.615 8.09 0.00 33.13 2.69
6240 7435 7.687941 TCAGTGATTAGTCTGGGAAAATTTC 57.312 36.000 0.00 0.00 33.13 2.17
6243 7438 9.347240 CATATTCAGTGATTAGTCTGGGAAAAT 57.653 33.333 0.00 0.00 33.13 1.82
6246 7441 7.437713 ACATATTCAGTGATTAGTCTGGGAA 57.562 36.000 0.00 0.00 33.13 3.97
6247 7442 8.727100 ATACATATTCAGTGATTAGTCTGGGA 57.273 34.615 0.00 0.00 33.13 4.37
6248 7443 9.212641 CAATACATATTCAGTGATTAGTCTGGG 57.787 37.037 0.00 0.00 33.13 4.45
6249 7444 9.987272 TCAATACATATTCAGTGATTAGTCTGG 57.013 33.333 0.00 0.00 33.13 3.86
6333 7528 6.847956 TTGGACAATTTTTGCAAGATTCAG 57.152 33.333 0.00 0.00 0.00 3.02
6346 7541 7.112452 AGCTGTTTTAGAGTTTGGACAATTT 57.888 32.000 0.00 0.00 0.00 1.82
6347 7542 6.715347 AGCTGTTTTAGAGTTTGGACAATT 57.285 33.333 0.00 0.00 0.00 2.32
6351 7546 4.290969 GCAAGCTGTTTTAGAGTTTGGAC 58.709 43.478 0.00 0.00 0.00 4.02
6475 7670 1.914634 CCGGACAGTTCGAGATTCAG 58.085 55.000 1.55 0.00 0.00 3.02
6484 7679 2.350102 CGTTTTAAAGGCCGGACAGTTC 60.350 50.000 11.69 0.00 0.00 3.01
6510 7706 0.884259 AATTTGCAGCCCGTTTTGCC 60.884 50.000 0.00 0.00 39.54 4.52
6638 7834 3.119137 GGAATGTTTCGGCCTATTTTGCT 60.119 43.478 0.00 0.00 0.00 3.91
6744 7940 7.889469 AGTTTATACAGTTTGGTAAGACTCGA 58.111 34.615 0.00 0.00 0.00 4.04
6774 7972 2.878089 GCCCATTTTGCCCAACCGT 61.878 57.895 0.00 0.00 0.00 4.83
6776 7974 0.179006 TTTGCCCATTTTGCCCAACC 60.179 50.000 0.00 0.00 0.00 3.77
6798 7996 7.506938 CCATCTTGTATAATCAACCTGGGAAAT 59.493 37.037 0.00 0.00 0.00 2.17
6872 8070 7.624549 TCTAAGATTAAGCCAACTTGACTGAT 58.375 34.615 0.00 0.00 36.57 2.90
6919 8117 6.239402 CCTGGGAGTCACAGAAAAATGATTTT 60.239 38.462 24.43 0.00 41.37 1.82
6931 8134 1.536418 TGGGTCCTGGGAGTCACAG 60.536 63.158 15.97 15.97 35.74 3.66
6938 8141 2.920912 GACGTGTGGGTCCTGGGA 60.921 66.667 0.00 0.00 0.00 4.37
6942 8145 0.472471 AAACATGACGTGTGGGTCCT 59.528 50.000 0.00 0.00 41.14 3.85
6951 8154 5.065988 GGCCACTTAATGATAAACATGACGT 59.934 40.000 0.00 0.00 39.39 4.34
6999 8202 9.624373 CCAGTCTAGGACTAAGTATAGTAACAA 57.376 37.037 0.00 0.00 41.37 2.83
7017 8220 5.779529 TTAACTAATACCCGCCAGTCTAG 57.220 43.478 0.00 0.00 0.00 2.43
7167 8371 1.393883 GTCTCCCTTGTCGAATTTCGC 59.606 52.381 13.86 9.59 40.21 4.70
7199 8403 1.986757 GGTGAGCTGCTGGAGGAGA 60.987 63.158 7.01 0.00 35.31 3.71
7277 8481 5.773239 TTACCTTAAAAGCGTCTTCATCG 57.227 39.130 0.00 0.00 0.00 3.84
7329 8533 9.305925 CAAATGAAGCTTTAAATCCATTAGGTC 57.694 33.333 0.00 0.00 35.89 3.85
7404 8608 1.828224 GCGGATCCCAAATCCACCC 60.828 63.158 6.06 0.00 38.08 4.61
7416 8620 2.456119 CCACTTGCAGACGCGGATC 61.456 63.158 12.47 0.00 42.97 3.36
7581 8791 2.047465 CAGCGCACCAGCTTCTCT 60.047 61.111 11.47 0.00 46.80 3.10
7659 8869 0.519519 TGGGCGTTCACTTATTTGCG 59.480 50.000 0.00 0.00 0.00 4.85
7660 8870 2.715737 TTGGGCGTTCACTTATTTGC 57.284 45.000 0.00 0.00 0.00 3.68
7661 8871 6.183360 GCTAAAATTGGGCGTTCACTTATTTG 60.183 38.462 0.00 0.00 0.00 2.32
7662 8872 5.867174 GCTAAAATTGGGCGTTCACTTATTT 59.133 36.000 0.00 0.00 0.00 1.40
7663 8873 5.407502 GCTAAAATTGGGCGTTCACTTATT 58.592 37.500 0.00 0.00 0.00 1.40
7664 8874 4.438200 CGCTAAAATTGGGCGTTCACTTAT 60.438 41.667 10.44 0.00 43.28 1.73
7665 8875 3.120130 CGCTAAAATTGGGCGTTCACTTA 60.120 43.478 10.44 0.00 43.28 2.24
7666 8876 2.351350 CGCTAAAATTGGGCGTTCACTT 60.351 45.455 10.44 0.00 43.28 3.16
7667 8877 1.199097 CGCTAAAATTGGGCGTTCACT 59.801 47.619 10.44 0.00 43.28 3.41
7668 8878 1.613270 CGCTAAAATTGGGCGTTCAC 58.387 50.000 10.44 0.00 43.28 3.18
7759 8971 9.043548 ACCAGGTATGTACTTACTACAGAAAAT 57.956 33.333 16.06 0.00 38.80 1.82
7851 9065 4.560743 TGCCAACGGTGCTGCTGA 62.561 61.111 0.00 0.00 0.00 4.26
7870 9084 1.338136 CCAGTACTCCGAATGCCCCT 61.338 60.000 0.00 0.00 0.00 4.79
7934 9152 1.788229 TGTGCGATATCCTCCTCCAA 58.212 50.000 0.00 0.00 0.00 3.53
7935 9153 1.688735 CTTGTGCGATATCCTCCTCCA 59.311 52.381 0.00 0.00 0.00 3.86
7940 9158 0.106708 TGGCCTTGTGCGATATCCTC 59.893 55.000 3.32 0.00 42.61 3.71
7946 9164 1.973281 CCTTGTGGCCTTGTGCGAT 60.973 57.895 3.32 0.00 42.61 4.58
7958 9176 0.322975 CTCCTCTGACCACCCTTGTG 59.677 60.000 0.00 0.00 42.39 3.33
7959 9177 0.191064 TCTCCTCTGACCACCCTTGT 59.809 55.000 0.00 0.00 0.00 3.16
7960 9178 0.610687 GTCTCCTCTGACCACCCTTG 59.389 60.000 0.00 0.00 0.00 3.61
7981 9199 1.069358 CTCTCCCGCTTTCCTACATCC 59.931 57.143 0.00 0.00 0.00 3.51
8041 9259 1.521681 CCCATCCGGCGTTTCTCTC 60.522 63.158 6.01 0.00 0.00 3.20
8076 9294 3.425094 CGGATCGTTTCCTCTAGATAGCG 60.425 52.174 0.00 0.00 42.99 4.26
8080 9298 3.497640 CGTACGGATCGTTTCCTCTAGAT 59.502 47.826 7.57 0.00 42.99 1.98
8084 9302 1.669779 CTCGTACGGATCGTTTCCTCT 59.330 52.381 16.52 0.00 42.99 3.69
8085 9303 1.399791 ACTCGTACGGATCGTTTCCTC 59.600 52.381 16.52 0.00 42.99 3.71
8086 9304 1.399791 GACTCGTACGGATCGTTTCCT 59.600 52.381 16.52 0.00 42.99 3.36
8087 9305 1.131126 TGACTCGTACGGATCGTTTCC 59.869 52.381 16.52 0.00 41.54 3.13
8088 9306 2.532531 TGACTCGTACGGATCGTTTC 57.467 50.000 16.52 2.53 41.54 2.78
8089 9307 2.589014 GTTGACTCGTACGGATCGTTT 58.411 47.619 16.52 0.00 41.54 3.60
8091 9309 0.095935 CGTTGACTCGTACGGATCGT 59.904 55.000 16.52 7.72 44.35 3.73
8092 9310 0.371301 TCGTTGACTCGTACGGATCG 59.629 55.000 16.52 11.64 38.26 3.69
8094 9312 0.731417 CCTCGTTGACTCGTACGGAT 59.269 55.000 16.52 3.36 38.26 4.18
8097 9315 1.862147 CGCCTCGTTGACTCGTACG 60.862 63.158 9.53 9.53 39.03 3.67
8201 9426 1.995626 GAGAGCCCAACAGCCCCTA 60.996 63.158 0.00 0.00 0.00 3.53
8215 9447 2.656560 ACTTCCAAACGGATCGAGAG 57.343 50.000 0.00 0.00 30.78 3.20
8216 9448 4.730949 ATTACTTCCAAACGGATCGAGA 57.269 40.909 0.00 0.00 30.78 4.04
8217 9449 5.796350 AAATTACTTCCAAACGGATCGAG 57.204 39.130 0.00 0.00 30.78 4.04
8248 9489 5.300539 GGGAGGAGAGGAAAATAAAAGATGC 59.699 44.000 0.00 0.00 0.00 3.91
8537 9799 8.487970 CGAAATAACAGAGTCAATACGCAATAT 58.512 33.333 0.00 0.00 0.00 1.28
8538 9800 7.490079 ACGAAATAACAGAGTCAATACGCAATA 59.510 33.333 0.00 0.00 0.00 1.90
8539 9801 6.312918 ACGAAATAACAGAGTCAATACGCAAT 59.687 34.615 0.00 0.00 0.00 3.56
8540 9802 5.636121 ACGAAATAACAGAGTCAATACGCAA 59.364 36.000 0.00 0.00 0.00 4.85
8541 9803 5.165676 ACGAAATAACAGAGTCAATACGCA 58.834 37.500 0.00 0.00 0.00 5.24
8542 9804 5.276254 GGACGAAATAACAGAGTCAATACGC 60.276 44.000 0.00 0.00 33.84 4.42
8543 9805 6.034591 AGGACGAAATAACAGAGTCAATACG 58.965 40.000 0.00 0.00 33.84 3.06
8544 9806 7.259161 AGAGGACGAAATAACAGAGTCAATAC 58.741 38.462 0.00 0.00 33.84 1.89
8545 9807 7.122204 TGAGAGGACGAAATAACAGAGTCAATA 59.878 37.037 0.00 0.00 33.84 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.