Multiple sequence alignment - TraesCS2A01G166300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G166300 chr2A 100.000 2276 0 0 1 2276 118669498 118667223 0.000000e+00 4204.0
1 TraesCS2A01G166300 chr2A 86.957 207 27 0 1071 1277 118489067 118488861 1.360000e-57 233.0
2 TraesCS2A01G166300 chr2A 93.966 116 7 0 260 375 300683131 300683016 2.320000e-40 176.0
3 TraesCS2A01G166300 chr2B 92.576 916 49 10 404 1313 167796928 167796026 0.000000e+00 1297.0
4 TraesCS2A01G166300 chr2B 78.296 493 80 22 793 1277 167497752 167497279 2.210000e-75 292.0
5 TraesCS2A01G166300 chr2B 88.670 203 23 0 2074 2276 167514365 167514163 4.850000e-62 248.0
6 TraesCS2A01G166300 chr2B 85.990 207 29 0 1071 1277 167499556 167499350 2.940000e-54 222.0
7 TraesCS2A01G166300 chr2B 94.017 117 7 0 259 375 18972053 18972169 6.460000e-41 178.0
8 TraesCS2A01G166300 chr2B 92.683 123 8 1 1616 1737 167795964 167795842 2.320000e-40 176.0
9 TraesCS2A01G166300 chr2B 87.333 150 19 0 1439 1588 399350534 399350683 3.010000e-39 172.0
10 TraesCS2A01G166300 chr2B 87.248 149 19 0 1439 1587 353574567 353574715 1.080000e-38 171.0
11 TraesCS2A01G166300 chr2B 86.747 83 10 1 1616 1698 167499288 167499207 8.660000e-15 91.6
12 TraesCS2A01G166300 chr2D 91.196 920 35 15 401 1307 117220410 117219524 0.000000e+00 1208.0
13 TraesCS2A01G166300 chr2D 93.218 693 38 6 1593 2276 117219478 117218786 0.000000e+00 1011.0
14 TraesCS2A01G166300 chr2D 79.557 406 65 17 793 1189 117197052 117196656 8.010000e-70 274.0
15 TraesCS2A01G166300 chr2D 87.440 207 26 0 1071 1277 117200013 117199807 2.920000e-59 239.0
16 TraesCS2A01G166300 chr2D 94.690 113 5 1 263 374 12390031 12389919 8.360000e-40 174.0
17 TraesCS2A01G166300 chr2D 93.043 115 8 0 260 374 25208828 25208714 3.890000e-38 169.0
18 TraesCS2A01G166300 chr5B 87.919 149 18 0 1440 1588 477559594 477559742 2.320000e-40 176.0
19 TraesCS2A01G166300 chr5B 92.035 113 9 0 260 372 345532712 345532824 2.340000e-35 159.0
20 TraesCS2A01G166300 chr7A 93.966 116 6 1 260 375 10197073 10197187 8.360000e-40 174.0
21 TraesCS2A01G166300 chr1D 87.838 148 18 0 1440 1587 27881742 27881889 8.360000e-40 174.0
22 TraesCS2A01G166300 chr1D 93.103 116 8 0 260 375 8011786 8011671 1.080000e-38 171.0
23 TraesCS2A01G166300 chr1D 87.162 148 19 0 1440 1587 279241571 279241424 3.890000e-38 169.0
24 TraesCS2A01G166300 chr1D 83.240 179 24 5 1438 1611 3763870 3763693 2.340000e-35 159.0
25 TraesCS2A01G166300 chr3D 93.103 116 8 0 260 375 282780658 282780543 1.080000e-38 171.0
26 TraesCS2A01G166300 chr3D 86.755 151 20 0 1440 1590 376270026 376270176 3.890000e-38 169.0
27 TraesCS2A01G166300 chr1A 87.248 149 18 1 1440 1588 59621039 59620892 3.890000e-38 169.0
28 TraesCS2A01G166300 chr1A 86.755 151 20 0 1439 1589 559056324 559056474 3.890000e-38 169.0
29 TraesCS2A01G166300 chr7B 92.174 115 9 0 260 374 688168456 688168570 1.810000e-36 163.0
30 TraesCS2A01G166300 chr7D 78.472 144 14 9 1896 2024 55574082 55573941 6.740000e-11 78.7
31 TraesCS2A01G166300 chr4B 88.000 50 6 0 2028 2077 633672918 633672869 2.440000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G166300 chr2A 118667223 118669498 2275 True 4204.000000 4204 100.000000 1 2276 1 chr2A.!!$R2 2275
1 TraesCS2A01G166300 chr2B 167795842 167796928 1086 True 736.500000 1297 92.629500 404 1737 2 chr2B.!!$R3 1333
2 TraesCS2A01G166300 chr2B 167497279 167499556 2277 True 201.866667 292 83.677667 793 1698 3 chr2B.!!$R2 905
3 TraesCS2A01G166300 chr2D 117218786 117220410 1624 True 1109.500000 1208 92.207000 401 2276 2 chr2D.!!$R4 1875
4 TraesCS2A01G166300 chr2D 117196656 117200013 3357 True 256.500000 274 83.498500 793 1277 2 chr2D.!!$R3 484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.037326 GCTGGTGAGATCCGAACACA 60.037 55.0 0.0 0.0 36.42 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 3707 0.027194 CAATGAGATTGACTGCGGCG 59.973 55.0 0.51 0.51 42.83 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.685532 GAGAAAATGAAAAGAAGTTGTGGAC 57.314 36.000 0.00 0.00 0.00 4.02
25 26 7.410120 AGAAAATGAAAAGAAGTTGTGGACT 57.590 32.000 0.00 0.00 41.47 3.85
34 35 2.930826 AGTTGTGGACTTAGGGTGTG 57.069 50.000 0.00 0.00 33.92 3.82
35 36 2.124411 AGTTGTGGACTTAGGGTGTGT 58.876 47.619 0.00 0.00 33.92 3.72
36 37 2.508300 AGTTGTGGACTTAGGGTGTGTT 59.492 45.455 0.00 0.00 33.92 3.32
37 38 3.053917 AGTTGTGGACTTAGGGTGTGTTT 60.054 43.478 0.00 0.00 33.92 2.83
38 39 2.925724 TGTGGACTTAGGGTGTGTTTG 58.074 47.619 0.00 0.00 0.00 2.93
39 40 2.227194 GTGGACTTAGGGTGTGTTTGG 58.773 52.381 0.00 0.00 0.00 3.28
40 41 2.128535 TGGACTTAGGGTGTGTTTGGA 58.871 47.619 0.00 0.00 0.00 3.53
41 42 2.714250 TGGACTTAGGGTGTGTTTGGAT 59.286 45.455 0.00 0.00 0.00 3.41
42 43 3.139397 TGGACTTAGGGTGTGTTTGGATT 59.861 43.478 0.00 0.00 0.00 3.01
43 44 3.506067 GGACTTAGGGTGTGTTTGGATTG 59.494 47.826 0.00 0.00 0.00 2.67
45 46 2.969821 TAGGGTGTGTTTGGATTGCT 57.030 45.000 0.00 0.00 0.00 3.91
47 48 0.319813 GGGTGTGTTTGGATTGCTGC 60.320 55.000 0.00 0.00 0.00 5.25
49 50 0.664166 GTGTGTTTGGATTGCTGCCG 60.664 55.000 0.00 0.00 0.00 5.69
50 51 1.734117 GTGTTTGGATTGCTGCCGC 60.734 57.895 0.00 0.00 0.00 6.53
52 53 1.444895 GTTTGGATTGCTGCCGCTG 60.445 57.895 0.70 0.00 36.97 5.18
53 54 1.902918 TTTGGATTGCTGCCGCTGT 60.903 52.632 0.70 0.00 36.97 4.40
54 55 1.865788 TTTGGATTGCTGCCGCTGTC 61.866 55.000 0.70 0.00 36.97 3.51
56 57 3.869272 GATTGCTGCCGCTGTCCG 61.869 66.667 0.70 0.00 36.97 4.79
66 67 2.746277 GCTGTCCGCCGAACCAAT 60.746 61.111 0.00 0.00 0.00 3.16
67 68 1.448893 GCTGTCCGCCGAACCAATA 60.449 57.895 0.00 0.00 0.00 1.90
69 70 1.539496 GCTGTCCGCCGAACCAATATA 60.539 52.381 0.00 0.00 0.00 0.86
70 71 2.870435 GCTGTCCGCCGAACCAATATAT 60.870 50.000 0.00 0.00 0.00 0.86
72 73 3.135225 TGTCCGCCGAACCAATATATTG 58.865 45.455 17.11 17.11 37.52 1.90
73 74 3.135994 GTCCGCCGAACCAATATATTGT 58.864 45.455 21.20 6.51 36.06 2.71
74 75 3.185797 GTCCGCCGAACCAATATATTGTC 59.814 47.826 21.20 13.38 36.06 3.18
75 76 2.156891 CCGCCGAACCAATATATTGTCG 59.843 50.000 22.30 22.30 36.58 4.35
76 77 2.798283 CGCCGAACCAATATATTGTCGT 59.202 45.455 24.94 15.46 35.68 4.34
77 78 3.246699 CGCCGAACCAATATATTGTCGTT 59.753 43.478 24.94 20.68 35.68 3.85
78 79 4.523813 GCCGAACCAATATATTGTCGTTG 58.476 43.478 24.94 16.92 35.68 4.10
79 80 4.271533 GCCGAACCAATATATTGTCGTTGA 59.728 41.667 24.94 0.00 35.68 3.18
80 81 5.734311 CCGAACCAATATATTGTCGTTGAC 58.266 41.667 24.94 12.85 35.68 3.18
82 83 6.698329 CCGAACCAATATATTGTCGTTGACTA 59.302 38.462 24.94 0.00 35.68 2.59
83 84 7.306399 CCGAACCAATATATTGTCGTTGACTAC 60.306 40.741 24.94 11.91 35.68 2.73
94 95 2.259505 GTTGACTACGAAGCTAGCGT 57.740 50.000 17.08 17.08 45.01 5.07
95 96 2.175566 GTTGACTACGAAGCTAGCGTC 58.824 52.381 19.34 19.34 42.62 5.19
96 97 1.735386 TGACTACGAAGCTAGCGTCT 58.265 50.000 24.96 15.64 42.62 4.18
97 98 1.397343 TGACTACGAAGCTAGCGTCTG 59.603 52.381 24.96 20.19 42.62 3.51
98 99 1.397692 GACTACGAAGCTAGCGTCTGT 59.602 52.381 24.96 23.75 42.62 3.41
100 101 2.228343 ACTACGAAGCTAGCGTCTGTTT 59.772 45.455 24.96 6.71 42.62 2.83
101 102 1.419374 ACGAAGCTAGCGTCTGTTTG 58.581 50.000 24.96 13.44 37.42 2.93
103 104 1.668919 CGAAGCTAGCGTCTGTTTGGA 60.669 52.381 24.96 0.00 0.00 3.53
104 105 2.622436 GAAGCTAGCGTCTGTTTGGAT 58.378 47.619 21.55 0.00 0.00 3.41
106 107 1.009829 GCTAGCGTCTGTTTGGATGG 58.990 55.000 0.00 0.00 0.00 3.51
107 108 1.676014 GCTAGCGTCTGTTTGGATGGT 60.676 52.381 0.00 0.00 36.92 3.55
108 109 2.699954 CTAGCGTCTGTTTGGATGGTT 58.300 47.619 0.00 0.00 35.12 3.67
109 110 1.981256 AGCGTCTGTTTGGATGGTTT 58.019 45.000 0.00 0.00 30.00 3.27
110 111 1.880027 AGCGTCTGTTTGGATGGTTTC 59.120 47.619 0.00 0.00 30.00 2.78
111 112 1.068541 GCGTCTGTTTGGATGGTTTCC 60.069 52.381 0.00 0.00 45.69 3.13
128 129 3.599568 CAAATTATTGGCGCGCCG 58.400 55.556 41.73 23.24 39.42 6.46
139 140 4.817063 CGCGCCGCAAGTCCATTG 62.817 66.667 10.75 0.00 42.20 2.82
141 142 2.745884 CGCCGCAAGTCCATTGGA 60.746 61.111 0.00 0.00 39.47 3.53
180 181 4.167483 CAATTTTTGGGCGAGGCG 57.833 55.556 0.00 0.00 0.00 5.52
181 182 1.288752 CAATTTTTGGGCGAGGCGT 59.711 52.632 0.00 0.00 0.00 5.68
182 183 0.319469 CAATTTTTGGGCGAGGCGTT 60.319 50.000 0.00 0.00 0.00 4.84
184 185 2.153547 ATTTTTGGGCGAGGCGTTGG 62.154 55.000 0.00 0.00 0.00 3.77
203 204 4.483243 GGCCGATTCCTCCGCCAA 62.483 66.667 0.00 0.00 43.06 4.52
205 206 2.043980 GCCGATTCCTCCGCCAAAA 61.044 57.895 0.00 0.00 0.00 2.44
206 207 1.591504 GCCGATTCCTCCGCCAAAAA 61.592 55.000 0.00 0.00 0.00 1.94
208 209 1.476488 CCGATTCCTCCGCCAAAAATT 59.524 47.619 0.00 0.00 0.00 1.82
209 210 2.094234 CCGATTCCTCCGCCAAAAATTT 60.094 45.455 0.00 0.00 0.00 1.82
210 211 2.923020 CGATTCCTCCGCCAAAAATTTG 59.077 45.455 0.00 0.00 37.90 2.32
246 247 4.329545 GGGCCAACGCTGGTGAGA 62.330 66.667 4.39 0.00 45.53 3.27
247 248 2.045926 GGCCAACGCTGGTGAGAT 60.046 61.111 6.73 0.00 45.53 2.75
248 249 2.109126 GGCCAACGCTGGTGAGATC 61.109 63.158 6.73 0.00 45.53 2.75
249 250 2.109126 GCCAACGCTGGTGAGATCC 61.109 63.158 6.73 0.00 45.53 3.36
251 252 1.215382 CAACGCTGGTGAGATCCGA 59.785 57.895 0.00 0.00 0.00 4.55
253 254 0.389948 AACGCTGGTGAGATCCGAAC 60.390 55.000 0.00 0.00 0.00 3.95
254 255 1.215382 CGCTGGTGAGATCCGAACA 59.785 57.895 0.00 0.00 0.00 3.18
255 256 1.078759 CGCTGGTGAGATCCGAACAC 61.079 60.000 0.00 0.00 0.00 3.32
256 257 0.037326 GCTGGTGAGATCCGAACACA 60.037 55.000 0.00 0.00 36.42 3.72
257 258 1.406069 GCTGGTGAGATCCGAACACAT 60.406 52.381 0.00 0.00 36.42 3.21
258 259 2.544685 CTGGTGAGATCCGAACACATC 58.455 52.381 0.00 0.00 36.42 3.06
259 260 1.207089 TGGTGAGATCCGAACACATCC 59.793 52.381 0.00 0.00 36.42 3.51
260 261 1.482593 GGTGAGATCCGAACACATCCT 59.517 52.381 0.00 0.00 36.42 3.24
262 263 3.132289 GGTGAGATCCGAACACATCCTTA 59.868 47.826 0.00 0.00 36.42 2.69
265 266 6.153067 GTGAGATCCGAACACATCCTTATAG 58.847 44.000 0.00 0.00 35.06 1.31
266 267 5.833667 TGAGATCCGAACACATCCTTATAGT 59.166 40.000 0.00 0.00 0.00 2.12
268 269 5.833667 AGATCCGAACACATCCTTATAGTCA 59.166 40.000 0.00 0.00 0.00 3.41
269 270 5.925506 TCCGAACACATCCTTATAGTCAA 57.074 39.130 0.00 0.00 0.00 3.18
270 271 5.657474 TCCGAACACATCCTTATAGTCAAC 58.343 41.667 0.00 0.00 0.00 3.18
271 272 4.809426 CCGAACACATCCTTATAGTCAACC 59.191 45.833 0.00 0.00 0.00 3.77
273 274 6.106673 CGAACACATCCTTATAGTCAACCTT 58.893 40.000 0.00 0.00 0.00 3.50
274 275 7.262772 CGAACACATCCTTATAGTCAACCTTA 58.737 38.462 0.00 0.00 0.00 2.69
275 276 7.926555 CGAACACATCCTTATAGTCAACCTTAT 59.073 37.037 0.00 0.00 0.00 1.73
278 279 8.368668 ACACATCCTTATAGTCAACCTTATAGC 58.631 37.037 0.00 0.00 0.00 2.97
279 280 7.819900 CACATCCTTATAGTCAACCTTATAGCC 59.180 40.741 0.00 0.00 0.00 3.93
280 281 7.512746 ACATCCTTATAGTCAACCTTATAGCCA 59.487 37.037 0.00 0.00 0.00 4.75
282 283 7.732996 TCCTTATAGTCAACCTTATAGCCAAC 58.267 38.462 0.00 0.00 0.00 3.77
283 284 7.567622 TCCTTATAGTCAACCTTATAGCCAACT 59.432 37.037 0.00 0.00 0.00 3.16
284 285 7.873505 CCTTATAGTCAACCTTATAGCCAACTC 59.126 40.741 0.00 0.00 0.00 3.01
285 286 8.548880 TTATAGTCAACCTTATAGCCAACTCT 57.451 34.615 0.00 0.00 0.00 3.24
286 287 9.650714 TTATAGTCAACCTTATAGCCAACTCTA 57.349 33.333 0.00 0.00 0.00 2.43
288 289 7.439108 AGTCAACCTTATAGCCAACTCTATT 57.561 36.000 0.00 0.00 32.07 1.73
289 290 7.275920 AGTCAACCTTATAGCCAACTCTATTG 58.724 38.462 0.00 0.00 32.07 1.90
290 291 7.048512 GTCAACCTTATAGCCAACTCTATTGT 58.951 38.462 0.00 0.00 32.07 2.71
291 292 8.202137 GTCAACCTTATAGCCAACTCTATTGTA 58.798 37.037 0.00 0.00 32.07 2.41
293 294 8.993121 CAACCTTATAGCCAACTCTATTGTATG 58.007 37.037 0.00 0.00 32.07 2.39
294 295 8.492415 ACCTTATAGCCAACTCTATTGTATGA 57.508 34.615 0.00 0.00 32.07 2.15
295 296 8.589338 ACCTTATAGCCAACTCTATTGTATGAG 58.411 37.037 0.00 0.00 36.47 2.90
296 297 8.589338 CCTTATAGCCAACTCTATTGTATGAGT 58.411 37.037 0.00 0.00 44.40 3.41
301 302 8.534954 AGCCAACTCTATTGTATGAGTAACTA 57.465 34.615 0.00 0.00 42.02 2.24
303 304 9.765795 GCCAACTCTATTGTATGAGTAACTAAT 57.234 33.333 0.00 0.00 42.02 1.73
327 328 6.382869 AGTGCTAATTCTTAATGACATGGC 57.617 37.500 0.00 0.00 0.00 4.40
328 329 5.887598 AGTGCTAATTCTTAATGACATGGCA 59.112 36.000 2.18 2.18 0.00 4.92
345 346 3.616956 GGCATGTCTATATAGCCAGCA 57.383 47.619 4.75 2.46 44.59 4.41
346 347 3.529533 GGCATGTCTATATAGCCAGCAG 58.470 50.000 4.75 0.00 44.59 4.24
347 348 2.935201 GCATGTCTATATAGCCAGCAGC 59.065 50.000 4.75 2.89 44.25 5.25
367 368 6.789262 GCAGCTGGCTATATTATTAACCATG 58.211 40.000 17.12 0.00 40.25 3.66
369 370 6.600822 CAGCTGGCTATATTATTAACCATGCT 59.399 38.462 5.57 0.00 34.32 3.79
370 371 6.825721 AGCTGGCTATATTATTAACCATGCTC 59.174 38.462 0.00 0.00 30.87 4.26
371 372 6.825721 GCTGGCTATATTATTAACCATGCTCT 59.174 38.462 0.00 0.00 0.00 4.09
372 373 7.987458 GCTGGCTATATTATTAACCATGCTCTA 59.013 37.037 0.00 0.00 0.00 2.43
373 374 9.890629 CTGGCTATATTATTAACCATGCTCTAA 57.109 33.333 0.00 0.00 0.00 2.10
374 375 9.890629 TGGCTATATTATTAACCATGCTCTAAG 57.109 33.333 0.00 0.00 0.00 2.18
375 376 8.831550 GGCTATATTATTAACCATGCTCTAAGC 58.168 37.037 0.00 0.00 42.82 3.09
385 386 2.946947 GCTCTAAGCAGGTTTGGCA 58.053 52.632 0.00 0.00 41.89 4.92
387 388 1.200948 GCTCTAAGCAGGTTTGGCAAG 59.799 52.381 0.00 0.00 41.89 4.01
388 389 1.200948 CTCTAAGCAGGTTTGGCAAGC 59.799 52.381 5.41 5.41 0.00 4.01
399 400 3.064324 GGCAAGCCAGCACGGAAT 61.064 61.111 6.14 0.00 36.56 3.01
400 401 1.748879 GGCAAGCCAGCACGGAATA 60.749 57.895 6.14 0.00 36.56 1.75
401 402 1.312371 GGCAAGCCAGCACGGAATAA 61.312 55.000 6.14 0.00 36.56 1.40
402 403 0.179163 GCAAGCCAGCACGGAATAAC 60.179 55.000 0.00 0.00 36.56 1.89
404 405 1.812571 CAAGCCAGCACGGAATAACTT 59.187 47.619 0.00 0.00 36.56 2.66
405 406 1.739067 AGCCAGCACGGAATAACTTC 58.261 50.000 0.00 0.00 36.56 3.01
406 407 1.279271 AGCCAGCACGGAATAACTTCT 59.721 47.619 0.00 0.00 36.56 2.85
420 421 7.418025 CGGAATAACTTCTGGTAGAATCTCCTT 60.418 40.741 0.00 0.00 33.13 3.36
495 496 0.845102 CCCTACCACTTCCCCCACTT 60.845 60.000 0.00 0.00 0.00 3.16
496 497 0.618981 CCTACCACTTCCCCCACTTC 59.381 60.000 0.00 0.00 0.00 3.01
632 643 6.294397 GGCAATGCATGGTTTTTATTGGAAAA 60.294 34.615 7.79 0.00 31.28 2.29
667 678 7.500992 AGTGTAAGAATCGACCAATGTGATAT 58.499 34.615 0.00 0.00 0.00 1.63
721 734 8.926710 ACACATAAACTTATTCGTCAGAGAAAG 58.073 33.333 0.00 0.00 33.43 2.62
722 735 9.140286 CACATAAACTTATTCGTCAGAGAAAGA 57.860 33.333 0.00 0.00 33.43 2.52
723 736 9.360093 ACATAAACTTATTCGTCAGAGAAAGAG 57.640 33.333 0.00 0.00 33.43 2.85
763 776 0.108329 TAGCCCTGCGTGTAAAGAGC 60.108 55.000 0.00 0.00 0.00 4.09
805 818 1.059913 CTCACCCTCCACCAAGAACT 58.940 55.000 0.00 0.00 0.00 3.01
855 3043 0.723981 GCCTGCAGATGAAGACGAAC 59.276 55.000 17.39 0.00 0.00 3.95
964 3156 0.678395 ATAGCATCCCGTCTCTGCAG 59.322 55.000 7.63 7.63 38.37 4.41
972 3164 0.459237 CCGTCTCTGCAGCTGTAAGG 60.459 60.000 16.64 6.47 0.00 2.69
976 3168 0.901124 CTCTGCAGCTGTAAGGGTCT 59.099 55.000 16.64 0.00 0.00 3.85
977 3169 0.898320 TCTGCAGCTGTAAGGGTCTC 59.102 55.000 16.64 0.00 0.00 3.36
1337 3545 4.876679 GGCCTACTGAATGAAAACTACTCC 59.123 45.833 0.00 0.00 0.00 3.85
1339 3547 6.116126 GCCTACTGAATGAAAACTACTCCAT 58.884 40.000 0.00 0.00 0.00 3.41
1341 3549 7.121315 GCCTACTGAATGAAAACTACTCCATTT 59.879 37.037 0.00 0.00 30.29 2.32
1342 3550 8.454106 CCTACTGAATGAAAACTACTCCATTTG 58.546 37.037 0.00 0.00 30.29 2.32
1344 3552 8.237811 ACTGAATGAAAACTACTCCATTTGTT 57.762 30.769 0.00 0.00 30.29 2.83
1345 3553 8.695456 ACTGAATGAAAACTACTCCATTTGTTT 58.305 29.630 0.00 0.00 34.59 2.83
1347 3555 8.690884 TGAATGAAAACTACTCCATTTGTTTCA 58.309 29.630 0.00 0.00 32.35 2.69
1349 3557 9.883142 AATGAAAACTACTCCATTTGTTTCAAA 57.117 25.926 0.00 0.00 32.35 2.69
1350 3558 9.883142 ATGAAAACTACTCCATTTGTTTCAAAA 57.117 25.926 0.00 0.00 32.35 2.44
1351 3559 9.883142 TGAAAACTACTCCATTTGTTTCAAAAT 57.117 25.926 0.00 0.00 32.35 1.82
1358 3566 8.986477 ACTCCATTTGTTTCAAAATATAGTGC 57.014 30.769 0.00 0.00 29.39 4.40
1359 3567 8.806146 ACTCCATTTGTTTCAAAATATAGTGCT 58.194 29.630 0.00 0.00 29.39 4.40
1360 3568 9.643693 CTCCATTTGTTTCAAAATATAGTGCTT 57.356 29.630 0.00 0.00 0.00 3.91
1361 3569 9.995003 TCCATTTGTTTCAAAATATAGTGCTTT 57.005 25.926 0.00 0.00 0.00 3.51
1379 3587 8.340618 AGTGCTTTCTTTATTCTTATGCTTCA 57.659 30.769 0.00 0.00 0.00 3.02
1380 3588 8.796475 AGTGCTTTCTTTATTCTTATGCTTCAA 58.204 29.630 0.00 0.00 0.00 2.69
1381 3589 8.854312 GTGCTTTCTTTATTCTTATGCTTCAAC 58.146 33.333 0.00 0.00 0.00 3.18
1382 3590 8.796475 TGCTTTCTTTATTCTTATGCTTCAACT 58.204 29.630 0.00 0.00 0.00 3.16
1383 3591 9.631452 GCTTTCTTTATTCTTATGCTTCAACTT 57.369 29.630 0.00 0.00 0.00 2.66
1417 3625 9.582431 AAATTTAATCAATGAGATCAACTGCTG 57.418 29.630 0.00 0.00 35.39 4.41
1418 3626 4.634184 AATCAATGAGATCAACTGCTGC 57.366 40.909 0.00 0.00 35.39 5.25
1419 3627 2.004733 TCAATGAGATCAACTGCTGCG 58.995 47.619 0.00 0.00 0.00 5.18
1420 3628 1.063616 CAATGAGATCAACTGCTGCGG 59.936 52.381 6.98 6.98 0.00 5.69
1421 3629 0.538584 ATGAGATCAACTGCTGCGGA 59.461 50.000 16.72 0.21 0.00 5.54
1422 3630 0.321346 TGAGATCAACTGCTGCGGAA 59.679 50.000 16.72 0.30 0.00 4.30
1423 3631 1.005340 GAGATCAACTGCTGCGGAAG 58.995 55.000 16.72 0.00 0.00 3.46
1424 3632 0.392193 AGATCAACTGCTGCGGAAGG 60.392 55.000 16.72 4.04 0.00 3.46
1425 3633 0.391661 GATCAACTGCTGCGGAAGGA 60.392 55.000 16.72 9.46 0.00 3.36
1426 3634 0.036732 ATCAACTGCTGCGGAAGGAA 59.963 50.000 16.72 0.00 0.00 3.36
1427 3635 0.179032 TCAACTGCTGCGGAAGGAAA 60.179 50.000 16.72 0.00 0.00 3.13
1428 3636 0.667993 CAACTGCTGCGGAAGGAAAA 59.332 50.000 16.72 0.00 0.00 2.29
1429 3637 1.066908 CAACTGCTGCGGAAGGAAAAA 59.933 47.619 16.72 0.00 0.00 1.94
1430 3638 1.620822 ACTGCTGCGGAAGGAAAAAT 58.379 45.000 16.72 0.00 0.00 1.82
1431 3639 1.963515 ACTGCTGCGGAAGGAAAAATT 59.036 42.857 16.72 0.00 0.00 1.82
1432 3640 3.153919 ACTGCTGCGGAAGGAAAAATTA 58.846 40.909 16.72 0.00 0.00 1.40
1433 3641 3.763897 ACTGCTGCGGAAGGAAAAATTAT 59.236 39.130 16.72 0.00 0.00 1.28
1434 3642 4.947388 ACTGCTGCGGAAGGAAAAATTATA 59.053 37.500 16.72 0.00 0.00 0.98
1435 3643 5.163652 ACTGCTGCGGAAGGAAAAATTATAC 60.164 40.000 16.72 0.00 0.00 1.47
1436 3644 4.097286 TGCTGCGGAAGGAAAAATTATACC 59.903 41.667 0.00 0.00 0.00 2.73
1437 3645 4.788521 GCTGCGGAAGGAAAAATTATACCG 60.789 45.833 0.00 0.00 41.63 4.02
1438 3646 3.628487 TGCGGAAGGAAAAATTATACCGG 59.372 43.478 0.00 0.00 39.56 5.28
1439 3647 3.878699 GCGGAAGGAAAAATTATACCGGA 59.121 43.478 9.46 0.00 39.56 5.14
1440 3648 4.336153 GCGGAAGGAAAAATTATACCGGAA 59.664 41.667 9.46 0.00 39.56 4.30
1441 3649 5.163632 GCGGAAGGAAAAATTATACCGGAAA 60.164 40.000 9.46 0.00 39.56 3.13
1442 3650 6.625520 GCGGAAGGAAAAATTATACCGGAAAA 60.626 38.462 9.46 0.00 39.56 2.29
1443 3651 7.314393 CGGAAGGAAAAATTATACCGGAAAAA 58.686 34.615 9.46 0.00 36.27 1.94
1444 3652 7.977293 CGGAAGGAAAAATTATACCGGAAAAAT 59.023 33.333 9.46 0.69 36.27 1.82
1445 3653 9.661563 GGAAGGAAAAATTATACCGGAAAAATT 57.338 29.630 9.46 7.65 0.00 1.82
1492 3700 9.309516 TGAATACGAATTCACTGGTATAACTTC 57.690 33.333 6.22 1.97 45.17 3.01
1493 3701 9.530633 GAATACGAATTCACTGGTATAACTTCT 57.469 33.333 6.22 0.00 41.09 2.85
1494 3702 8.873215 ATACGAATTCACTGGTATAACTTCTG 57.127 34.615 6.22 0.00 0.00 3.02
1495 3703 5.581085 ACGAATTCACTGGTATAACTTCTGC 59.419 40.000 6.22 0.00 0.00 4.26
1496 3704 5.812642 CGAATTCACTGGTATAACTTCTGCT 59.187 40.000 6.22 0.00 0.00 4.24
1497 3705 6.019479 CGAATTCACTGGTATAACTTCTGCTC 60.019 42.308 6.22 0.00 0.00 4.26
1498 3706 4.737855 TCACTGGTATAACTTCTGCTCC 57.262 45.455 0.00 0.00 0.00 4.70
1499 3707 3.451178 TCACTGGTATAACTTCTGCTCCC 59.549 47.826 0.00 0.00 0.00 4.30
1500 3708 2.431057 ACTGGTATAACTTCTGCTCCCG 59.569 50.000 0.00 0.00 0.00 5.14
1501 3709 1.138266 TGGTATAACTTCTGCTCCCGC 59.862 52.381 0.00 0.00 0.00 6.13
1502 3710 1.540580 GGTATAACTTCTGCTCCCGCC 60.541 57.143 0.00 0.00 34.43 6.13
1503 3711 0.387929 TATAACTTCTGCTCCCGCCG 59.612 55.000 0.00 0.00 34.43 6.46
1504 3712 2.925162 ATAACTTCTGCTCCCGCCGC 62.925 60.000 0.00 0.00 34.43 6.53
1512 3720 2.892425 CTCCCGCCGCAGTCAATC 60.892 66.667 0.00 0.00 0.00 2.67
1513 3721 3.376935 CTCCCGCCGCAGTCAATCT 62.377 63.158 0.00 0.00 0.00 2.40
1514 3722 2.892425 CCCGCCGCAGTCAATCTC 60.892 66.667 0.00 0.00 0.00 2.75
1515 3723 2.125552 CCGCCGCAGTCAATCTCA 60.126 61.111 0.00 0.00 0.00 3.27
1516 3724 1.522355 CCGCCGCAGTCAATCTCAT 60.522 57.895 0.00 0.00 0.00 2.90
1517 3725 1.091771 CCGCCGCAGTCAATCTCATT 61.092 55.000 0.00 0.00 0.00 2.57
1518 3726 0.027194 CGCCGCAGTCAATCTCATTG 59.973 55.000 0.00 0.00 41.57 2.82
1519 3727 0.379669 GCCGCAGTCAATCTCATTGG 59.620 55.000 0.00 0.00 40.61 3.16
1520 3728 1.742761 CCGCAGTCAATCTCATTGGT 58.257 50.000 0.00 0.00 40.61 3.67
1521 3729 2.086869 CCGCAGTCAATCTCATTGGTT 58.913 47.619 0.00 0.00 40.61 3.67
1522 3730 3.270027 CCGCAGTCAATCTCATTGGTTA 58.730 45.455 0.00 0.00 40.61 2.85
1523 3731 3.689161 CCGCAGTCAATCTCATTGGTTAA 59.311 43.478 0.00 0.00 40.61 2.01
1524 3732 4.155826 CCGCAGTCAATCTCATTGGTTAAA 59.844 41.667 0.00 0.00 40.61 1.52
1525 3733 5.163622 CCGCAGTCAATCTCATTGGTTAAAT 60.164 40.000 0.00 0.00 40.61 1.40
1526 3734 6.324819 CGCAGTCAATCTCATTGGTTAAATT 58.675 36.000 0.00 0.00 40.61 1.82
1527 3735 6.808212 CGCAGTCAATCTCATTGGTTAAATTT 59.192 34.615 0.00 0.00 40.61 1.82
1528 3736 7.967854 CGCAGTCAATCTCATTGGTTAAATTTA 59.032 33.333 0.00 0.00 40.61 1.40
1529 3737 9.807649 GCAGTCAATCTCATTGGTTAAATTTAT 57.192 29.630 0.00 0.00 40.61 1.40
1544 3752 9.850628 GGTTAAATTTATAGTCAAAGTTGGACC 57.149 33.333 6.78 0.00 35.89 4.46
1554 3762 7.277174 AGTCAAAGTTGGACCTTAGAAATTG 57.723 36.000 6.78 0.00 35.89 2.32
1555 3763 5.920840 GTCAAAGTTGGACCTTAGAAATTGC 59.079 40.000 0.00 0.00 0.00 3.56
1556 3764 4.766404 AAGTTGGACCTTAGAAATTGCG 57.234 40.909 0.00 0.00 0.00 4.85
1557 3765 3.081804 AGTTGGACCTTAGAAATTGCGG 58.918 45.455 0.00 0.00 0.00 5.69
1558 3766 2.122783 TGGACCTTAGAAATTGCGGG 57.877 50.000 0.00 0.00 0.00 6.13
1559 3767 1.353022 TGGACCTTAGAAATTGCGGGT 59.647 47.619 0.00 0.00 0.00 5.28
1560 3768 1.743394 GGACCTTAGAAATTGCGGGTG 59.257 52.381 3.97 0.00 0.00 4.61
1561 3769 1.132453 GACCTTAGAAATTGCGGGTGC 59.868 52.381 3.97 0.00 43.20 5.01
1577 3785 6.747659 GCGGGTGCACTATATTTTAAAATG 57.252 37.500 21.19 8.59 42.15 2.32
1578 3786 5.689961 GCGGGTGCACTATATTTTAAAATGG 59.310 40.000 21.19 13.72 42.15 3.16
1579 3787 6.460399 GCGGGTGCACTATATTTTAAAATGGA 60.460 38.462 21.19 6.19 42.15 3.41
1580 3788 7.138736 CGGGTGCACTATATTTTAAAATGGAG 58.861 38.462 21.19 18.49 0.00 3.86
1581 3789 7.433680 GGGTGCACTATATTTTAAAATGGAGG 58.566 38.462 21.19 11.71 0.00 4.30
1582 3790 7.286775 GGGTGCACTATATTTTAAAATGGAGGA 59.713 37.037 21.19 9.67 0.00 3.71
1583 3791 8.691797 GGTGCACTATATTTTAAAATGGAGGAA 58.308 33.333 21.19 2.85 0.00 3.36
1584 3792 9.736023 GTGCACTATATTTTAAAATGGAGGAAG 57.264 33.333 21.19 12.97 0.00 3.46
1585 3793 9.474313 TGCACTATATTTTAAAATGGAGGAAGT 57.526 29.630 21.19 12.36 0.00 3.01
1591 3799 6.584185 TTTTAAAATGGAGGAAGTACCAGC 57.416 37.500 0.00 0.00 42.04 4.85
1592 3800 3.806949 AAAATGGAGGAAGTACCAGCA 57.193 42.857 0.00 0.00 42.04 4.41
1593 3801 3.806949 AAATGGAGGAAGTACCAGCAA 57.193 42.857 0.00 0.00 42.04 3.91
1594 3802 2.789409 ATGGAGGAAGTACCAGCAAC 57.211 50.000 0.00 0.00 42.04 4.17
1595 3803 0.690762 TGGAGGAAGTACCAGCAACC 59.309 55.000 0.00 0.00 42.04 3.77
1596 3804 0.690762 GGAGGAAGTACCAGCAACCA 59.309 55.000 0.00 0.00 42.04 3.67
1597 3805 1.282157 GGAGGAAGTACCAGCAACCAT 59.718 52.381 0.00 0.00 42.04 3.55
1625 3833 2.274437 CAGTACCTGTCTAGCGTCGTA 58.726 52.381 0.00 0.00 0.00 3.43
1726 3936 7.498900 CCACTATGCAGTTACTTCATTATGGAA 59.501 37.037 16.33 0.00 30.46 3.53
1776 3986 0.323629 CCTTAGGCCAACTCCACGAA 59.676 55.000 5.01 0.00 0.00 3.85
1798 4008 4.918588 ACCCGTTTTGTCTGGATTCTATT 58.081 39.130 0.00 0.00 0.00 1.73
1799 4009 5.321927 ACCCGTTTTGTCTGGATTCTATTT 58.678 37.500 0.00 0.00 0.00 1.40
1801 4011 5.393027 CCCGTTTTGTCTGGATTCTATTTGG 60.393 44.000 0.00 0.00 0.00 3.28
1802 4012 5.393027 CCGTTTTGTCTGGATTCTATTTGGG 60.393 44.000 0.00 0.00 0.00 4.12
1804 4014 6.621613 GTTTTGTCTGGATTCTATTTGGGTC 58.378 40.000 0.00 0.00 0.00 4.46
1807 4017 3.879892 GTCTGGATTCTATTTGGGTCAGC 59.120 47.826 0.00 0.00 0.00 4.26
1813 4028 4.380843 TTCTATTTGGGTCAGCCAAAGA 57.619 40.909 24.71 19.84 39.92 2.52
1815 4030 1.928868 ATTTGGGTCAGCCAAAGAGG 58.071 50.000 24.71 0.00 39.92 3.69
1836 4051 1.965219 CCGTCCGACCTCTTCTGTT 59.035 57.895 0.00 0.00 0.00 3.16
1839 4054 2.059541 CGTCCGACCTCTTCTGTTTTC 58.940 52.381 0.00 0.00 0.00 2.29
1846 4061 1.497991 CTCTTCTGTTTTCGCGTGGA 58.502 50.000 5.77 0.00 0.00 4.02
1853 4068 1.076332 GTTTTCGCGTGGATAGTGCT 58.924 50.000 5.77 0.00 0.00 4.40
1875 4090 2.828877 CCGAGCGGACCAAATGTATAA 58.171 47.619 2.00 0.00 37.50 0.98
1956 4172 6.815089 TGAATCACATGCCCCAATAATAAAC 58.185 36.000 0.00 0.00 0.00 2.01
2081 4298 3.698539 TGTGCTCAACCAAGTCATTTCAA 59.301 39.130 0.00 0.00 0.00 2.69
2152 4369 9.255029 AGATAACATAATTGCCCTGTTAGTTTT 57.745 29.630 0.00 0.00 38.39 2.43
2228 4445 2.666272 TCAACCAAGCCAACACCATA 57.334 45.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.484140 AGTCCACAACTTCTTTTCATTTTCTC 58.516 34.615 0.00 0.00 33.03 2.87
5 6 6.265422 CCCTAAGTCCACAACTTCTTTTCATT 59.735 38.462 0.00 0.00 45.28 2.57
6 7 5.770162 CCCTAAGTCCACAACTTCTTTTCAT 59.230 40.000 0.00 0.00 45.28 2.57
7 8 5.130350 CCCTAAGTCCACAACTTCTTTTCA 58.870 41.667 0.00 0.00 45.28 2.69
8 9 5.008712 CACCCTAAGTCCACAACTTCTTTTC 59.991 44.000 0.00 0.00 45.28 2.29
10 11 4.079958 ACACCCTAAGTCCACAACTTCTTT 60.080 41.667 0.00 0.00 45.28 2.52
11 12 3.458487 ACACCCTAAGTCCACAACTTCTT 59.542 43.478 0.00 0.00 45.28 2.52
12 13 3.046374 ACACCCTAAGTCCACAACTTCT 58.954 45.455 0.00 0.00 45.28 2.85
13 14 3.139077 CACACCCTAAGTCCACAACTTC 58.861 50.000 0.00 0.00 45.28 3.01
16 17 2.632987 ACACACCCTAAGTCCACAAC 57.367 50.000 0.00 0.00 0.00 3.32
17 18 3.283751 CAAACACACCCTAAGTCCACAA 58.716 45.455 0.00 0.00 0.00 3.33
18 19 2.422235 CCAAACACACCCTAAGTCCACA 60.422 50.000 0.00 0.00 0.00 4.17
19 20 2.158726 TCCAAACACACCCTAAGTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
20 21 2.128535 TCCAAACACACCCTAAGTCCA 58.871 47.619 0.00 0.00 0.00 4.02
24 25 3.057315 CAGCAATCCAAACACACCCTAAG 60.057 47.826 0.00 0.00 0.00 2.18
25 26 2.890311 CAGCAATCCAAACACACCCTAA 59.110 45.455 0.00 0.00 0.00 2.69
26 27 2.513753 CAGCAATCCAAACACACCCTA 58.486 47.619 0.00 0.00 0.00 3.53
27 28 1.331214 CAGCAATCCAAACACACCCT 58.669 50.000 0.00 0.00 0.00 4.34
28 29 0.319813 GCAGCAATCCAAACACACCC 60.320 55.000 0.00 0.00 0.00 4.61
29 30 0.319813 GGCAGCAATCCAAACACACC 60.320 55.000 0.00 0.00 0.00 4.16
30 31 0.664166 CGGCAGCAATCCAAACACAC 60.664 55.000 0.00 0.00 0.00 3.82
31 32 1.659233 CGGCAGCAATCCAAACACA 59.341 52.632 0.00 0.00 0.00 3.72
33 34 2.650196 GCGGCAGCAATCCAAACA 59.350 55.556 3.18 0.00 44.35 2.83
49 50 6.370526 CAATATATTGGTTCGGCGGACAGC 62.371 50.000 21.55 8.68 38.45 4.40
50 51 2.519377 TATATTGGTTCGGCGGACAG 57.481 50.000 21.55 0.00 0.00 3.51
52 53 3.135994 ACAATATATTGGTTCGGCGGAC 58.864 45.455 25.45 10.57 41.96 4.79
53 54 3.395639 GACAATATATTGGTTCGGCGGA 58.604 45.455 25.45 0.00 41.96 5.54
54 55 2.156891 CGACAATATATTGGTTCGGCGG 59.843 50.000 25.45 1.93 41.96 6.13
56 57 4.271533 TCAACGACAATATATTGGTTCGGC 59.728 41.667 28.02 8.75 41.96 5.54
57 58 5.522460 AGTCAACGACAATATATTGGTTCGG 59.478 40.000 28.02 18.04 41.96 4.30
75 76 2.159544 AGACGCTAGCTTCGTAGTCAAC 60.160 50.000 14.84 1.66 40.59 3.18
76 77 2.082231 AGACGCTAGCTTCGTAGTCAA 58.918 47.619 14.84 0.00 40.59 3.18
77 78 1.397343 CAGACGCTAGCTTCGTAGTCA 59.603 52.381 14.84 0.00 40.59 3.41
78 79 1.397692 ACAGACGCTAGCTTCGTAGTC 59.602 52.381 14.84 11.94 40.59 2.59
79 80 1.451067 ACAGACGCTAGCTTCGTAGT 58.549 50.000 14.84 12.06 40.59 2.73
80 81 2.546195 AACAGACGCTAGCTTCGTAG 57.454 50.000 14.84 11.49 40.59 3.51
82 83 1.419374 CAAACAGACGCTAGCTTCGT 58.581 50.000 14.84 12.56 43.49 3.85
83 84 0.716108 CCAAACAGACGCTAGCTTCG 59.284 55.000 14.84 12.17 0.00 3.79
85 86 2.350522 CATCCAAACAGACGCTAGCTT 58.649 47.619 13.93 2.39 0.00 3.74
86 87 1.406069 CCATCCAAACAGACGCTAGCT 60.406 52.381 13.93 0.00 0.00 3.32
87 88 1.009829 CCATCCAAACAGACGCTAGC 58.990 55.000 4.06 4.06 0.00 3.42
89 90 2.851263 AACCATCCAAACAGACGCTA 57.149 45.000 0.00 0.00 0.00 4.26
90 91 1.880027 GAAACCATCCAAACAGACGCT 59.120 47.619 0.00 0.00 0.00 5.07
91 92 2.331809 GAAACCATCCAAACAGACGC 57.668 50.000 0.00 0.00 0.00 5.19
111 112 3.599568 CGGCGCGCCAATAATTTG 58.400 55.556 45.26 25.41 35.37 2.32
122 123 4.817063 CAATGGACTTGCGGCGCG 62.817 66.667 28.09 16.51 0.00 6.86
123 124 4.481112 CCAATGGACTTGCGGCGC 62.481 66.667 27.44 27.44 33.20 6.53
138 139 2.612604 CGTATTGAACGTGGATGTCCA 58.387 47.619 0.00 0.00 46.72 4.02
163 164 0.319469 AACGCCTCGCCCAAAAATTG 60.319 50.000 0.00 0.00 0.00 2.32
164 165 0.319469 CAACGCCTCGCCCAAAAATT 60.319 50.000 0.00 0.00 0.00 1.82
165 166 1.288752 CAACGCCTCGCCCAAAAAT 59.711 52.632 0.00 0.00 0.00 1.82
166 167 2.725008 CAACGCCTCGCCCAAAAA 59.275 55.556 0.00 0.00 0.00 1.94
167 168 3.291383 CCAACGCCTCGCCCAAAA 61.291 61.111 0.00 0.00 0.00 2.44
180 181 3.202706 GAGGAATCGGCCGCCAAC 61.203 66.667 23.51 11.09 0.00 3.77
181 182 4.483243 GGAGGAATCGGCCGCCAA 62.483 66.667 23.51 3.06 46.06 4.52
188 189 1.102978 ATTTTTGGCGGAGGAATCGG 58.897 50.000 0.00 0.00 0.00 4.18
189 190 2.923020 CAAATTTTTGGCGGAGGAATCG 59.077 45.455 0.00 0.00 34.59 3.34
209 210 3.361158 CCAACGATTGGCACGCCA 61.361 61.111 6.67 6.67 45.17 5.69
233 234 0.389817 TTCGGATCTCACCAGCGTTG 60.390 55.000 0.00 0.00 0.00 4.10
235 236 1.215647 GTTCGGATCTCACCAGCGT 59.784 57.895 0.00 0.00 0.00 5.07
236 237 1.078759 GTGTTCGGATCTCACCAGCG 61.079 60.000 0.00 0.00 0.00 5.18
237 238 0.037326 TGTGTTCGGATCTCACCAGC 60.037 55.000 0.00 0.00 0.00 4.85
238 239 2.544685 GATGTGTTCGGATCTCACCAG 58.455 52.381 0.00 0.00 0.00 4.00
241 242 2.969628 AGGATGTGTTCGGATCTCAC 57.030 50.000 0.00 0.00 0.00 3.51
242 243 5.833667 ACTATAAGGATGTGTTCGGATCTCA 59.166 40.000 0.00 0.00 0.00 3.27
246 247 6.281405 GTTGACTATAAGGATGTGTTCGGAT 58.719 40.000 0.00 0.00 0.00 4.18
247 248 5.394883 GGTTGACTATAAGGATGTGTTCGGA 60.395 44.000 0.00 0.00 0.00 4.55
248 249 4.809426 GGTTGACTATAAGGATGTGTTCGG 59.191 45.833 0.00 0.00 0.00 4.30
249 250 5.661458 AGGTTGACTATAAGGATGTGTTCG 58.339 41.667 0.00 0.00 0.00 3.95
253 254 7.819900 GGCTATAAGGTTGACTATAAGGATGTG 59.180 40.741 0.00 0.00 0.00 3.21
254 255 7.512746 TGGCTATAAGGTTGACTATAAGGATGT 59.487 37.037 0.00 0.00 0.00 3.06
255 256 7.907389 TGGCTATAAGGTTGACTATAAGGATG 58.093 38.462 0.00 0.00 0.00 3.51
256 257 8.376270 GTTGGCTATAAGGTTGACTATAAGGAT 58.624 37.037 0.00 0.00 0.00 3.24
257 258 7.567622 AGTTGGCTATAAGGTTGACTATAAGGA 59.432 37.037 0.00 0.00 0.00 3.36
258 259 7.736893 AGTTGGCTATAAGGTTGACTATAAGG 58.263 38.462 0.00 0.00 0.00 2.69
259 260 8.643324 AGAGTTGGCTATAAGGTTGACTATAAG 58.357 37.037 0.00 0.00 0.00 1.73
260 261 8.548880 AGAGTTGGCTATAAGGTTGACTATAA 57.451 34.615 0.00 0.00 0.00 0.98
262 263 8.728596 ATAGAGTTGGCTATAAGGTTGACTAT 57.271 34.615 0.00 0.00 29.56 2.12
265 266 7.048512 ACAATAGAGTTGGCTATAAGGTTGAC 58.951 38.462 0.00 0.00 31.09 3.18
266 267 7.195374 ACAATAGAGTTGGCTATAAGGTTGA 57.805 36.000 0.00 0.00 31.09 3.18
268 269 8.934697 TCATACAATAGAGTTGGCTATAAGGTT 58.065 33.333 0.00 0.00 31.09 3.50
269 270 8.492415 TCATACAATAGAGTTGGCTATAAGGT 57.508 34.615 0.00 0.00 31.09 3.50
270 271 8.589338 ACTCATACAATAGAGTTGGCTATAAGG 58.411 37.037 0.00 0.00 42.12 2.69
274 275 9.148879 AGTTACTCATACAATAGAGTTGGCTAT 57.851 33.333 0.02 0.00 42.12 2.97
275 276 8.534954 AGTTACTCATACAATAGAGTTGGCTA 57.465 34.615 0.02 0.00 42.12 3.93
276 277 7.425224 AGTTACTCATACAATAGAGTTGGCT 57.575 36.000 0.02 0.00 42.12 4.75
277 278 9.765795 ATTAGTTACTCATACAATAGAGTTGGC 57.234 33.333 0.02 0.00 42.12 4.52
301 302 8.571336 GCCATGTCATTAAGAATTAGCACTATT 58.429 33.333 0.00 0.00 0.00 1.73
303 304 7.053498 TGCCATGTCATTAAGAATTAGCACTA 58.947 34.615 0.00 0.00 0.00 2.74
304 305 5.887598 TGCCATGTCATTAAGAATTAGCACT 59.112 36.000 0.00 0.00 0.00 4.40
305 306 6.135290 TGCCATGTCATTAAGAATTAGCAC 57.865 37.500 0.00 0.00 0.00 4.40
307 308 6.742109 ACATGCCATGTCATTAAGAATTAGC 58.258 36.000 4.03 0.00 39.92 3.09
325 326 3.529533 CTGCTGGCTATATAGACATGCC 58.470 50.000 24.95 16.16 41.28 4.40
326 327 2.935201 GCTGCTGGCTATATAGACATGC 59.065 50.000 18.77 21.32 41.28 4.06
343 344 6.678900 GCATGGTTAATAATATAGCCAGCTGC 60.679 42.308 8.66 3.91 39.18 5.25
344 345 6.600822 AGCATGGTTAATAATATAGCCAGCTG 59.399 38.462 6.78 6.78 39.18 4.24
345 346 6.725364 AGCATGGTTAATAATATAGCCAGCT 58.275 36.000 0.00 0.00 39.18 4.24
346 347 6.825721 AGAGCATGGTTAATAATATAGCCAGC 59.174 38.462 0.00 0.00 39.18 4.85
347 348 9.890629 TTAGAGCATGGTTAATAATATAGCCAG 57.109 33.333 0.00 0.00 39.18 4.85
349 350 8.831550 GCTTAGAGCATGGTTAATAATATAGCC 58.168 37.037 0.00 0.00 41.89 3.93
367 368 1.200948 CTTGCCAAACCTGCTTAGAGC 59.799 52.381 0.00 0.00 42.82 4.09
369 370 1.247567 GCTTGCCAAACCTGCTTAGA 58.752 50.000 0.00 0.00 0.00 2.10
370 371 0.244721 GGCTTGCCAAACCTGCTTAG 59.755 55.000 6.79 0.00 0.00 2.18
371 372 0.468958 TGGCTTGCCAAACCTGCTTA 60.469 50.000 12.40 0.00 0.00 3.09
372 373 1.751349 CTGGCTTGCCAAACCTGCTT 61.751 55.000 15.63 0.00 0.00 3.91
373 374 2.123338 TGGCTTGCCAAACCTGCT 60.123 55.556 12.40 0.00 0.00 4.24
374 375 2.341176 CTGGCTTGCCAAACCTGC 59.659 61.111 15.63 0.00 0.00 4.85
375 376 2.341176 GCTGGCTTGCCAAACCTG 59.659 61.111 15.63 4.75 0.00 4.00
376 377 2.123338 TGCTGGCTTGCCAAACCT 60.123 55.556 15.63 0.00 0.00 3.50
377 378 2.029518 GTGCTGGCTTGCCAAACC 59.970 61.111 15.63 7.57 0.00 3.27
378 379 2.355009 CGTGCTGGCTTGCCAAAC 60.355 61.111 15.63 14.60 0.00 2.93
379 380 3.604667 CCGTGCTGGCTTGCCAAA 61.605 61.111 15.63 4.31 0.00 3.28
380 381 3.940174 TATTCCGTGCTGGCTTGCCAA 62.940 52.381 15.63 0.00 37.80 4.52
382 383 1.312371 TTATTCCGTGCTGGCTTGCC 61.312 55.000 4.43 4.43 37.80 4.52
383 384 0.179163 GTTATTCCGTGCTGGCTTGC 60.179 55.000 0.00 0.00 37.80 4.01
384 385 1.453155 AGTTATTCCGTGCTGGCTTG 58.547 50.000 0.00 0.00 37.80 4.01
385 386 2.084546 GAAGTTATTCCGTGCTGGCTT 58.915 47.619 0.00 0.00 37.80 4.35
387 388 1.398390 CAGAAGTTATTCCGTGCTGGC 59.602 52.381 0.00 0.00 35.94 4.85
388 389 2.009774 CCAGAAGTTATTCCGTGCTGG 58.990 52.381 0.00 0.00 35.94 4.85
392 393 6.574350 AGATTCTACCAGAAGTTATTCCGTG 58.426 40.000 0.00 0.00 37.69 4.94
393 394 6.183360 GGAGATTCTACCAGAAGTTATTCCGT 60.183 42.308 0.00 0.00 37.69 4.69
394 395 6.041069 AGGAGATTCTACCAGAAGTTATTCCG 59.959 42.308 0.00 0.00 37.69 4.30
395 396 7.368198 AGGAGATTCTACCAGAAGTTATTCC 57.632 40.000 0.00 0.00 37.69 3.01
396 397 7.929245 GGAAGGAGATTCTACCAGAAGTTATTC 59.071 40.741 0.00 0.00 37.69 1.75
397 398 7.625682 AGGAAGGAGATTCTACCAGAAGTTATT 59.374 37.037 0.00 0.00 37.69 1.40
399 400 6.503944 AGGAAGGAGATTCTACCAGAAGTTA 58.496 40.000 0.00 0.00 37.69 2.24
400 401 5.346270 AGGAAGGAGATTCTACCAGAAGTT 58.654 41.667 0.00 0.00 37.69 2.66
401 402 4.954089 AGGAAGGAGATTCTACCAGAAGT 58.046 43.478 0.00 0.00 37.69 3.01
402 403 5.948742 AAGGAAGGAGATTCTACCAGAAG 57.051 43.478 0.00 0.00 37.69 2.85
404 405 6.044404 ACAAAAAGGAAGGAGATTCTACCAGA 59.956 38.462 0.00 0.00 38.07 3.86
405 406 6.241645 ACAAAAAGGAAGGAGATTCTACCAG 58.758 40.000 0.00 0.00 38.07 4.00
406 407 6.200878 ACAAAAAGGAAGGAGATTCTACCA 57.799 37.500 0.00 0.00 38.07 3.25
420 421 3.725634 TCCAAAAGGGGAACAAAAAGGA 58.274 40.909 0.00 0.00 37.22 3.36
472 473 1.003835 GGGGAAGTGGTAGGGCCTA 59.996 63.158 9.81 9.81 38.35 3.93
495 496 2.557317 GAGGCGTGGGAATAAATTCGA 58.443 47.619 0.00 0.00 37.67 3.71
496 497 1.260561 CGAGGCGTGGGAATAAATTCG 59.739 52.381 0.00 0.00 37.67 3.34
624 635 8.912988 TCTTACACTTTGTCTGAATTTTCCAAT 58.087 29.630 0.00 0.00 0.00 3.16
632 643 6.369065 GGTCGATTCTTACACTTTGTCTGAAT 59.631 38.462 0.00 6.47 36.15 2.57
644 655 7.272244 ACATATCACATTGGTCGATTCTTACA 58.728 34.615 0.00 0.00 0.00 2.41
645 656 7.653713 AGACATATCACATTGGTCGATTCTTAC 59.346 37.037 0.00 0.00 33.84 2.34
667 678 3.297830 TGCGATCTTTTTCGAGAGACA 57.702 42.857 0.00 0.00 41.62 3.41
763 776 2.223317 TGAATTTTCAGGCATCGCATCG 60.223 45.455 0.00 0.00 32.50 3.84
805 818 4.060900 GGCGCTGATCTGAATCTTATCAA 58.939 43.478 7.64 0.00 32.75 2.57
855 3043 1.136147 GCAGCATCTCGTGGCTTTG 59.864 57.895 0.00 0.00 38.56 2.77
964 3156 0.533032 AAGCTCGAGACCCTTACAGC 59.467 55.000 18.75 0.00 0.00 4.40
972 3164 1.414527 GCGTTAGCAAGCTCGAGACC 61.415 60.000 18.75 0.00 44.35 3.85
976 3168 2.506217 CCGCGTTAGCAAGCTCGA 60.506 61.111 4.92 0.00 45.49 4.04
977 3169 4.210304 GCCGCGTTAGCAAGCTCG 62.210 66.667 4.92 0.00 45.49 5.03
1191 3387 2.202610 TCGTCGATGAAGCCGCTG 60.203 61.111 4.45 0.00 0.00 5.18
1307 3504 5.607939 TTTCATTCAGTAGGCCGAGATAA 57.392 39.130 0.00 0.00 0.00 1.75
1309 3506 4.080863 AGTTTTCATTCAGTAGGCCGAGAT 60.081 41.667 0.00 0.00 0.00 2.75
1353 3561 9.448438 TGAAGCATAAGAATAAAGAAAGCACTA 57.552 29.630 0.00 0.00 0.00 2.74
1354 3562 8.340618 TGAAGCATAAGAATAAAGAAAGCACT 57.659 30.769 0.00 0.00 0.00 4.40
1355 3563 8.854312 GTTGAAGCATAAGAATAAAGAAAGCAC 58.146 33.333 0.00 0.00 0.00 4.40
1356 3564 8.796475 AGTTGAAGCATAAGAATAAAGAAAGCA 58.204 29.630 0.00 0.00 0.00 3.91
1357 3565 9.631452 AAGTTGAAGCATAAGAATAAAGAAAGC 57.369 29.630 0.00 0.00 0.00 3.51
1391 3599 9.582431 CAGCAGTTGATCTCATTGATTAAATTT 57.418 29.630 0.00 0.00 33.37 1.82
1392 3600 7.705325 GCAGCAGTTGATCTCATTGATTAAATT 59.295 33.333 0.00 0.00 33.37 1.82
1393 3601 7.201145 GCAGCAGTTGATCTCATTGATTAAAT 58.799 34.615 0.00 0.00 33.37 1.40
1394 3602 6.558009 GCAGCAGTTGATCTCATTGATTAAA 58.442 36.000 0.00 0.00 33.37 1.52
1395 3603 5.220719 CGCAGCAGTTGATCTCATTGATTAA 60.221 40.000 0.00 0.00 35.14 1.40
1396 3604 4.271776 CGCAGCAGTTGATCTCATTGATTA 59.728 41.667 0.00 0.00 35.14 1.75
1397 3605 3.064958 CGCAGCAGTTGATCTCATTGATT 59.935 43.478 0.00 0.00 35.14 2.57
1398 3606 2.612672 CGCAGCAGTTGATCTCATTGAT 59.387 45.455 0.00 0.00 38.27 2.57
1399 3607 2.004733 CGCAGCAGTTGATCTCATTGA 58.995 47.619 0.00 0.00 0.00 2.57
1400 3608 1.063616 CCGCAGCAGTTGATCTCATTG 59.936 52.381 0.00 0.00 0.00 2.82
1401 3609 1.065926 TCCGCAGCAGTTGATCTCATT 60.066 47.619 0.00 0.00 0.00 2.57
1402 3610 0.538584 TCCGCAGCAGTTGATCTCAT 59.461 50.000 0.00 0.00 0.00 2.90
1403 3611 0.321346 TTCCGCAGCAGTTGATCTCA 59.679 50.000 0.00 0.00 0.00 3.27
1404 3612 1.005340 CTTCCGCAGCAGTTGATCTC 58.995 55.000 0.00 0.00 0.00 2.75
1405 3613 0.392193 CCTTCCGCAGCAGTTGATCT 60.392 55.000 0.00 0.00 0.00 2.75
1406 3614 0.391661 TCCTTCCGCAGCAGTTGATC 60.392 55.000 0.00 0.00 0.00 2.92
1407 3615 0.036732 TTCCTTCCGCAGCAGTTGAT 59.963 50.000 0.00 0.00 0.00 2.57
1408 3616 0.179032 TTTCCTTCCGCAGCAGTTGA 60.179 50.000 0.00 0.00 0.00 3.18
1409 3617 0.667993 TTTTCCTTCCGCAGCAGTTG 59.332 50.000 0.00 0.00 0.00 3.16
1410 3618 1.398692 TTTTTCCTTCCGCAGCAGTT 58.601 45.000 0.00 0.00 0.00 3.16
1411 3619 1.620822 ATTTTTCCTTCCGCAGCAGT 58.379 45.000 0.00 0.00 0.00 4.40
1412 3620 2.730550 AATTTTTCCTTCCGCAGCAG 57.269 45.000 0.00 0.00 0.00 4.24
1413 3621 4.097286 GGTATAATTTTTCCTTCCGCAGCA 59.903 41.667 0.00 0.00 0.00 4.41
1414 3622 4.607955 GGTATAATTTTTCCTTCCGCAGC 58.392 43.478 0.00 0.00 0.00 5.25
1415 3623 4.261031 CCGGTATAATTTTTCCTTCCGCAG 60.261 45.833 0.00 0.00 36.15 5.18
1416 3624 3.628487 CCGGTATAATTTTTCCTTCCGCA 59.372 43.478 0.00 0.00 36.15 5.69
1417 3625 3.878699 TCCGGTATAATTTTTCCTTCCGC 59.121 43.478 0.00 0.00 36.15 5.54
1418 3626 6.439675 TTTCCGGTATAATTTTTCCTTCCG 57.560 37.500 0.00 0.00 37.04 4.30
1419 3627 9.661563 AATTTTTCCGGTATAATTTTTCCTTCC 57.338 29.630 0.00 0.00 0.00 3.46
1466 3674 9.309516 GAAGTTATACCAGTGAATTCGTATTCA 57.690 33.333 12.80 12.80 45.99 2.57
1467 3675 9.530633 AGAAGTTATACCAGTGAATTCGTATTC 57.469 33.333 7.74 7.74 40.50 1.75
1468 3676 9.314321 CAGAAGTTATACCAGTGAATTCGTATT 57.686 33.333 8.44 0.00 0.00 1.89
1469 3677 7.438459 GCAGAAGTTATACCAGTGAATTCGTAT 59.562 37.037 0.04 5.16 0.00 3.06
1470 3678 6.755141 GCAGAAGTTATACCAGTGAATTCGTA 59.245 38.462 0.04 0.00 0.00 3.43
1471 3679 5.581085 GCAGAAGTTATACCAGTGAATTCGT 59.419 40.000 0.04 0.00 0.00 3.85
1472 3680 5.812642 AGCAGAAGTTATACCAGTGAATTCG 59.187 40.000 0.04 0.00 0.00 3.34
1473 3681 6.258947 GGAGCAGAAGTTATACCAGTGAATTC 59.741 42.308 0.00 0.00 0.00 2.17
1474 3682 6.116126 GGAGCAGAAGTTATACCAGTGAATT 58.884 40.000 0.00 0.00 0.00 2.17
1475 3683 5.396884 GGGAGCAGAAGTTATACCAGTGAAT 60.397 44.000 0.00 0.00 0.00 2.57
1476 3684 4.081087 GGGAGCAGAAGTTATACCAGTGAA 60.081 45.833 0.00 0.00 0.00 3.18
1477 3685 3.451178 GGGAGCAGAAGTTATACCAGTGA 59.549 47.826 0.00 0.00 0.00 3.41
1478 3686 3.738281 CGGGAGCAGAAGTTATACCAGTG 60.738 52.174 0.00 0.00 0.00 3.66
1479 3687 2.431057 CGGGAGCAGAAGTTATACCAGT 59.569 50.000 0.00 0.00 0.00 4.00
1480 3688 3.099267 CGGGAGCAGAAGTTATACCAG 57.901 52.381 0.00 0.00 0.00 4.00
1495 3703 2.892425 GATTGACTGCGGCGGGAG 60.892 66.667 14.26 11.31 37.67 4.30
1496 3704 3.371097 GAGATTGACTGCGGCGGGA 62.371 63.158 14.26 0.00 0.00 5.14
1497 3705 2.892425 GAGATTGACTGCGGCGGG 60.892 66.667 14.26 2.36 0.00 6.13
1498 3706 1.091771 AATGAGATTGACTGCGGCGG 61.092 55.000 9.78 7.39 0.00 6.13
1499 3707 0.027194 CAATGAGATTGACTGCGGCG 59.973 55.000 0.51 0.51 42.83 6.46
1500 3708 0.379669 CCAATGAGATTGACTGCGGC 59.620 55.000 0.00 0.00 42.83 6.53
1501 3709 1.742761 ACCAATGAGATTGACTGCGG 58.257 50.000 0.00 0.00 42.83 5.69
1502 3710 4.944962 TTAACCAATGAGATTGACTGCG 57.055 40.909 0.00 0.00 42.83 5.18
1503 3711 9.807649 ATAAATTTAACCAATGAGATTGACTGC 57.192 29.630 1.21 0.00 42.83 4.40
1518 3726 9.850628 GGTCCAACTTTGACTATAAATTTAACC 57.149 33.333 1.21 0.00 0.00 2.85
1528 3736 9.014297 CAATTTCTAAGGTCCAACTTTGACTAT 57.986 33.333 0.00 0.00 33.21 2.12
1529 3737 7.040686 GCAATTTCTAAGGTCCAACTTTGACTA 60.041 37.037 0.00 0.00 33.21 2.59
1530 3738 6.239036 GCAATTTCTAAGGTCCAACTTTGACT 60.239 38.462 0.00 0.00 33.21 3.41
1531 3739 5.920840 GCAATTTCTAAGGTCCAACTTTGAC 59.079 40.000 0.00 0.00 33.21 3.18
1532 3740 5.278266 CGCAATTTCTAAGGTCCAACTTTGA 60.278 40.000 0.00 0.00 31.96 2.69
1533 3741 4.917415 CGCAATTTCTAAGGTCCAACTTTG 59.083 41.667 0.00 0.00 32.02 2.77
1534 3742 4.022329 CCGCAATTTCTAAGGTCCAACTTT 60.022 41.667 0.00 0.00 32.02 2.66
1535 3743 3.506067 CCGCAATTTCTAAGGTCCAACTT 59.494 43.478 0.00 0.00 34.52 2.66
1536 3744 3.081804 CCGCAATTTCTAAGGTCCAACT 58.918 45.455 0.00 0.00 0.00 3.16
1537 3745 2.163613 CCCGCAATTTCTAAGGTCCAAC 59.836 50.000 0.00 0.00 0.00 3.77
1538 3746 2.224917 ACCCGCAATTTCTAAGGTCCAA 60.225 45.455 0.00 0.00 0.00 3.53
1539 3747 1.353022 ACCCGCAATTTCTAAGGTCCA 59.647 47.619 0.00 0.00 0.00 4.02
1540 3748 1.743394 CACCCGCAATTTCTAAGGTCC 59.257 52.381 0.00 0.00 0.00 4.46
1541 3749 1.132453 GCACCCGCAATTTCTAAGGTC 59.868 52.381 0.00 0.00 38.36 3.85
1542 3750 1.173913 GCACCCGCAATTTCTAAGGT 58.826 50.000 0.00 0.00 38.36 3.50
1554 3762 5.689961 CCATTTTAAAATATAGTGCACCCGC 59.310 40.000 14.63 0.00 39.24 6.13
1555 3763 7.033530 TCCATTTTAAAATATAGTGCACCCG 57.966 36.000 14.63 0.00 0.00 5.28
1556 3764 7.286775 TCCTCCATTTTAAAATATAGTGCACCC 59.713 37.037 14.63 0.00 0.00 4.61
1557 3765 8.232913 TCCTCCATTTTAAAATATAGTGCACC 57.767 34.615 14.63 0.00 0.00 5.01
1558 3766 9.736023 CTTCCTCCATTTTAAAATATAGTGCAC 57.264 33.333 9.40 9.40 0.00 4.57
1559 3767 9.474313 ACTTCCTCCATTTTAAAATATAGTGCA 57.526 29.630 12.98 0.00 0.00 4.57
1565 3773 8.914011 GCTGGTACTTCCTCCATTTTAAAATAT 58.086 33.333 12.98 0.00 37.07 1.28
1566 3774 7.891183 TGCTGGTACTTCCTCCATTTTAAAATA 59.109 33.333 12.98 0.00 37.07 1.40
1567 3775 6.723977 TGCTGGTACTTCCTCCATTTTAAAAT 59.276 34.615 7.64 7.64 37.07 1.82
1568 3776 6.071984 TGCTGGTACTTCCTCCATTTTAAAA 58.928 36.000 2.51 2.51 37.07 1.52
1569 3777 5.636123 TGCTGGTACTTCCTCCATTTTAAA 58.364 37.500 0.00 0.00 37.07 1.52
1570 3778 5.249780 TGCTGGTACTTCCTCCATTTTAA 57.750 39.130 0.00 0.00 37.07 1.52
1571 3779 4.919774 TGCTGGTACTTCCTCCATTTTA 57.080 40.909 0.00 0.00 37.07 1.52
1572 3780 3.806949 TGCTGGTACTTCCTCCATTTT 57.193 42.857 0.00 0.00 37.07 1.82
1573 3781 3.421844 GTTGCTGGTACTTCCTCCATTT 58.578 45.455 0.00 0.00 37.07 2.32
1574 3782 2.290960 GGTTGCTGGTACTTCCTCCATT 60.291 50.000 0.00 0.00 37.07 3.16
1575 3783 1.282157 GGTTGCTGGTACTTCCTCCAT 59.718 52.381 0.00 0.00 37.07 3.41
1576 3784 0.690762 GGTTGCTGGTACTTCCTCCA 59.309 55.000 0.00 0.00 37.07 3.86
1577 3785 0.690762 TGGTTGCTGGTACTTCCTCC 59.309 55.000 0.00 0.00 37.07 4.30
1578 3786 2.027192 TGATGGTTGCTGGTACTTCCTC 60.027 50.000 0.00 0.00 37.07 3.71
1579 3787 1.985159 TGATGGTTGCTGGTACTTCCT 59.015 47.619 0.00 0.00 37.07 3.36
1580 3788 2.489938 TGATGGTTGCTGGTACTTCC 57.510 50.000 0.00 0.00 0.00 3.46
1581 3789 4.770795 ACTATGATGGTTGCTGGTACTTC 58.229 43.478 0.00 0.00 0.00 3.01
1582 3790 4.844349 ACTATGATGGTTGCTGGTACTT 57.156 40.909 0.00 0.00 0.00 2.24
1583 3791 4.714802 TGTACTATGATGGTTGCTGGTACT 59.285 41.667 0.00 0.00 32.33 2.73
1584 3792 5.018539 TGTACTATGATGGTTGCTGGTAC 57.981 43.478 0.00 0.00 0.00 3.34
1585 3793 4.714802 ACTGTACTATGATGGTTGCTGGTA 59.285 41.667 0.00 0.00 0.00 3.25
1586 3794 3.519510 ACTGTACTATGATGGTTGCTGGT 59.480 43.478 0.00 0.00 0.00 4.00
1587 3795 4.142609 ACTGTACTATGATGGTTGCTGG 57.857 45.455 0.00 0.00 0.00 4.85
1588 3796 5.050490 GGTACTGTACTATGATGGTTGCTG 58.950 45.833 16.79 0.00 0.00 4.41
1589 3797 4.962995 AGGTACTGTACTATGATGGTTGCT 59.037 41.667 16.79 0.00 37.18 3.91
1590 3798 5.277857 AGGTACTGTACTATGATGGTTGC 57.722 43.478 16.79 0.00 37.18 4.17
1614 3822 4.758165 TCAACCATATCATACGACGCTAGA 59.242 41.667 0.00 0.00 0.00 2.43
1625 3833 5.068198 GGCATGTCAAGTTCAACCATATCAT 59.932 40.000 0.00 0.00 0.00 2.45
1679 3888 3.875727 GGCGAACCTTAATTAAGTCTCCC 59.124 47.826 20.99 15.20 0.00 4.30
1726 3936 8.149647 ACAACATCAAATTCCATACACAAACAT 58.850 29.630 0.00 0.00 0.00 2.71
1776 3986 2.951229 AGAATCCAGACAAAACGGGT 57.049 45.000 0.00 0.00 0.00 5.28
1783 3993 5.500234 CTGACCCAAATAGAATCCAGACAA 58.500 41.667 0.00 0.00 0.00 3.18
1788 3998 2.580322 TGGCTGACCCAAATAGAATCCA 59.420 45.455 0.00 0.00 41.82 3.41
1836 4051 1.358725 GCAGCACTATCCACGCGAAA 61.359 55.000 15.93 0.00 0.00 3.46
1839 4054 3.264897 GGCAGCACTATCCACGCG 61.265 66.667 3.53 3.53 0.00 6.01
1853 4068 2.173758 TACATTTGGTCCGCTCGGCA 62.174 55.000 2.96 0.00 34.68 5.69
1933 4149 6.815089 TGTTTATTATTGGGGCATGTGATTC 58.185 36.000 0.00 0.00 0.00 2.52
2015 4232 8.070171 CACCGGTAGATGTATTGATTCATTTTC 58.930 37.037 6.87 0.00 0.00 2.29
2036 4253 3.976701 GACTCACCATGGCCACCGG 62.977 68.421 19.45 19.45 0.00 5.28
2037 4254 2.436646 GACTCACCATGGCCACCG 60.437 66.667 8.16 2.70 0.00 4.94
2122 4339 7.716799 AACAGGGCAATTATGTTATCTTTGA 57.283 32.000 0.00 0.00 35.47 2.69
2152 4369 7.027760 CGCTCGATTTTTACCTGATATAGCTA 58.972 38.462 0.00 0.00 0.00 3.32
2228 4445 1.849039 CCCTCTGATCCCAGGACAAAT 59.151 52.381 8.37 0.00 40.76 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.