Multiple sequence alignment - TraesCS2A01G166100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G166100 | chr2A | 100.000 | 3718 | 0 | 0 | 1 | 3718 | 118475866 | 118479583 | 0.000000e+00 | 6866.0 |
1 | TraesCS2A01G166100 | chr2A | 84.080 | 1740 | 252 | 18 | 1428 | 3154 | 84607180 | 84608907 | 0.000000e+00 | 1655.0 |
2 | TraesCS2A01G166100 | chr2A | 79.811 | 530 | 96 | 6 | 3182 | 3711 | 84608965 | 84609483 | 3.510000e-100 | 375.0 |
3 | TraesCS2A01G166100 | chr2A | 81.623 | 419 | 75 | 2 | 3247 | 3664 | 85803874 | 85803457 | 2.750000e-91 | 346.0 |
4 | TraesCS2A01G166100 | chr2A | 81.579 | 418 | 75 | 2 | 3248 | 3664 | 86050757 | 86050341 | 9.890000e-91 | 344.0 |
5 | TraesCS2A01G166100 | chr2A | 78.393 | 361 | 64 | 9 | 963 | 1313 | 84606788 | 84607144 | 4.830000e-54 | 222.0 |
6 | TraesCS2A01G166100 | chr2A | 93.069 | 101 | 7 | 0 | 1325 | 1425 | 118477154 | 118477254 | 8.320000e-32 | 148.0 |
7 | TraesCS2A01G166100 | chr2A | 93.069 | 101 | 7 | 0 | 1289 | 1389 | 118477190 | 118477290 | 8.320000e-32 | 148.0 |
8 | TraesCS2A01G166100 | chr2D | 95.390 | 2321 | 96 | 6 | 1397 | 3715 | 117185767 | 117188078 | 0.000000e+00 | 3683.0 |
9 | TraesCS2A01G166100 | chr2D | 83.878 | 1805 | 253 | 29 | 1365 | 3154 | 83839941 | 83841722 | 0.000000e+00 | 1687.0 |
10 | TraesCS2A01G166100 | chr2D | 83.689 | 1735 | 264 | 16 | 1428 | 3153 | 85685729 | 85684005 | 0.000000e+00 | 1618.0 |
11 | TraesCS2A01G166100 | chr2D | 83.782 | 1634 | 247 | 8 | 1536 | 3154 | 84927178 | 84925548 | 0.000000e+00 | 1533.0 |
12 | TraesCS2A01G166100 | chr2D | 82.011 | 1701 | 277 | 20 | 1428 | 3114 | 84934120 | 84932435 | 0.000000e+00 | 1419.0 |
13 | TraesCS2A01G166100 | chr2D | 92.551 | 537 | 31 | 3 | 779 | 1314 | 117185264 | 117185792 | 0.000000e+00 | 761.0 |
14 | TraesCS2A01G166100 | chr2D | 80.377 | 530 | 94 | 5 | 3182 | 3711 | 83841780 | 83842299 | 9.680000e-106 | 394.0 |
15 | TraesCS2A01G166100 | chr2D | 87.124 | 233 | 22 | 4 | 295 | 524 | 117184914 | 117185141 | 1.320000e-64 | 257.0 |
16 | TraesCS2A01G166100 | chr2D | 81.570 | 293 | 46 | 8 | 973 | 1261 | 84769524 | 84769236 | 6.210000e-58 | 235.0 |
17 | TraesCS2A01G166100 | chr2D | 78.478 | 381 | 65 | 12 | 963 | 1331 | 83839605 | 83839980 | 2.230000e-57 | 233.0 |
18 | TraesCS2A01G166100 | chr2D | 81.046 | 306 | 42 | 14 | 973 | 1267 | 85394764 | 85394464 | 2.890000e-56 | 230.0 |
19 | TraesCS2A01G166100 | chr2D | 79.245 | 318 | 49 | 12 | 964 | 1268 | 84927672 | 84927359 | 4.870000e-49 | 206.0 |
20 | TraesCS2A01G166100 | chr2D | 79.757 | 247 | 34 | 11 | 1056 | 1289 | 85686103 | 85685860 | 8.260000e-37 | 165.0 |
21 | TraesCS2A01G166100 | chr2D | 92.929 | 99 | 4 | 2 | 577 | 672 | 117185157 | 117185255 | 1.390000e-29 | 141.0 |
22 | TraesCS2A01G166100 | chr2B | 94.606 | 2373 | 113 | 4 | 1361 | 3718 | 167494394 | 167496766 | 0.000000e+00 | 3659.0 |
23 | TraesCS2A01G166100 | chr2B | 84.310 | 1740 | 249 | 17 | 1428 | 3154 | 135707997 | 135709725 | 0.000000e+00 | 1679.0 |
24 | TraesCS2A01G166100 | chr2B | 81.573 | 1742 | 292 | 20 | 1428 | 3155 | 137618304 | 137616578 | 0.000000e+00 | 1411.0 |
25 | TraesCS2A01G166100 | chr2B | 81.443 | 1746 | 287 | 26 | 1428 | 3155 | 136633878 | 136632152 | 0.000000e+00 | 1395.0 |
26 | TraesCS2A01G166100 | chr2B | 91.738 | 581 | 34 | 6 | 779 | 1353 | 167493886 | 167494458 | 0.000000e+00 | 795.0 |
27 | TraesCS2A01G166100 | chr2B | 81.649 | 485 | 85 | 3 | 3182 | 3664 | 135709783 | 135710265 | 2.080000e-107 | 399.0 |
28 | TraesCS2A01G166100 | chr2B | 85.302 | 381 | 34 | 13 | 297 | 674 | 167493520 | 167493881 | 1.260000e-99 | 374.0 |
29 | TraesCS2A01G166100 | chr2B | 80.000 | 485 | 93 | 4 | 3182 | 3664 | 137800804 | 137800322 | 4.570000e-94 | 355.0 |
30 | TraesCS2A01G166100 | chr2B | 80.000 | 295 | 39 | 17 | 973 | 1254 | 136957001 | 136956714 | 2.260000e-47 | 200.0 |
31 | TraesCS2A01G166100 | chr2B | 92.857 | 112 | 6 | 2 | 1 | 112 | 167493007 | 167493116 | 1.070000e-35 | 161.0 |
32 | TraesCS2A01G166100 | chr2B | 90.435 | 115 | 4 | 5 | 163 | 276 | 167493232 | 167493340 | 1.080000e-30 | 145.0 |
33 | TraesCS2A01G166100 | chr2B | 96.923 | 65 | 2 | 0 | 1325 | 1389 | 167494394 | 167494458 | 3.930000e-20 | 110.0 |
34 | TraesCS2A01G166100 | chr2B | 100.000 | 29 | 0 | 0 | 1397 | 1425 | 167494394 | 167494422 | 2.000000e-03 | 54.7 |
35 | TraesCS2A01G166100 | chr3B | 87.696 | 382 | 34 | 8 | 297 | 674 | 166526703 | 166527075 | 2.050000e-117 | 433.0 |
36 | TraesCS2A01G166100 | chr4A | 81.862 | 419 | 74 | 2 | 3247 | 3664 | 349799400 | 349798983 | 5.910000e-93 | 351.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G166100 | chr2A | 118475866 | 118479583 | 3717 | False | 2387.333333 | 6866 | 95.379333 | 1 | 3718 | 3 | chr2A.!!$F2 | 3717 |
1 | TraesCS2A01G166100 | chr2A | 84606788 | 84609483 | 2695 | False | 750.666667 | 1655 | 80.761333 | 963 | 3711 | 3 | chr2A.!!$F1 | 2748 |
2 | TraesCS2A01G166100 | chr2D | 84932435 | 84934120 | 1685 | True | 1419.000000 | 1419 | 82.011000 | 1428 | 3114 | 1 | chr2D.!!$R2 | 1686 |
3 | TraesCS2A01G166100 | chr2D | 117184914 | 117188078 | 3164 | False | 1210.500000 | 3683 | 91.998500 | 295 | 3715 | 4 | chr2D.!!$F2 | 3420 |
4 | TraesCS2A01G166100 | chr2D | 85684005 | 85686103 | 2098 | True | 891.500000 | 1618 | 81.723000 | 1056 | 3153 | 2 | chr2D.!!$R5 | 2097 |
5 | TraesCS2A01G166100 | chr2D | 84925548 | 84927672 | 2124 | True | 869.500000 | 1533 | 81.513500 | 964 | 3154 | 2 | chr2D.!!$R4 | 2190 |
6 | TraesCS2A01G166100 | chr2D | 83839605 | 83842299 | 2694 | False | 771.333333 | 1687 | 80.911000 | 963 | 3711 | 3 | chr2D.!!$F1 | 2748 |
7 | TraesCS2A01G166100 | chr2B | 137616578 | 137618304 | 1726 | True | 1411.000000 | 1411 | 81.573000 | 1428 | 3155 | 1 | chr2B.!!$R3 | 1727 |
8 | TraesCS2A01G166100 | chr2B | 136632152 | 136633878 | 1726 | True | 1395.000000 | 1395 | 81.443000 | 1428 | 3155 | 1 | chr2B.!!$R1 | 1727 |
9 | TraesCS2A01G166100 | chr2B | 135707997 | 135710265 | 2268 | False | 1039.000000 | 1679 | 82.979500 | 1428 | 3664 | 2 | chr2B.!!$F1 | 2236 |
10 | TraesCS2A01G166100 | chr2B | 167493007 | 167496766 | 3759 | False | 756.957143 | 3659 | 93.123000 | 1 | 3718 | 7 | chr2B.!!$F2 | 3717 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
288 | 387 | 0.036952 | CACGAAGCCTCTCCACACAT | 60.037 | 55.0 | 0.00 | 0.00 | 0.00 | 3.21 | F |
289 | 388 | 0.036952 | ACGAAGCCTCTCCACACATG | 60.037 | 55.0 | 0.00 | 0.00 | 0.00 | 3.21 | F |
1685 | 2038 | 0.040067 | GGTTCCTCAAACAGCGCAAG | 60.040 | 55.0 | 11.47 | 3.78 | 39.81 | 4.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1908 | 2275 | 0.179020 | TCTGTCCCAGGCAACACAAG | 60.179 | 55.0 | 0.0 | 0.0 | 41.41 | 3.16 | R |
2019 | 2386 | 1.668419 | GGAGTAACATGCTCGCCATT | 58.332 | 50.0 | 0.0 | 0.0 | 34.00 | 3.16 | R |
3495 | 3913 | 0.655733 | AAGTTGGTGTTTCACGCTCG | 59.344 | 50.0 | 0.0 | 0.0 | 34.83 | 5.03 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
86 | 87 | 0.527817 | CCCGTAACGAGGCATCAGTC | 60.528 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
87 | 88 | 0.527817 | CCGTAACGAGGCATCAGTCC | 60.528 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
88 | 89 | 0.456221 | CGTAACGAGGCATCAGTCCT | 59.544 | 55.000 | 0.00 | 0.00 | 36.46 | 3.85 |
89 | 90 | 1.135083 | CGTAACGAGGCATCAGTCCTT | 60.135 | 52.381 | 0.00 | 0.00 | 33.24 | 3.36 |
112 | 113 | 3.553105 | GTCGTCTTCACGGTGTTTTAACT | 59.447 | 43.478 | 8.17 | 0.00 | 46.70 | 2.24 |
113 | 114 | 3.798337 | TCGTCTTCACGGTGTTTTAACTC | 59.202 | 43.478 | 8.17 | 0.00 | 46.70 | 3.01 |
114 | 115 | 3.060070 | CGTCTTCACGGTGTTTTAACTCC | 60.060 | 47.826 | 8.17 | 4.10 | 42.73 | 3.85 |
121 | 122 | 2.747436 | GGTGTTTTAACTCCGTCGACT | 58.253 | 47.619 | 14.70 | 0.00 | 33.46 | 4.18 |
122 | 123 | 3.126073 | GGTGTTTTAACTCCGTCGACTT | 58.874 | 45.455 | 14.70 | 3.40 | 33.46 | 3.01 |
123 | 124 | 3.183172 | GGTGTTTTAACTCCGTCGACTTC | 59.817 | 47.826 | 14.70 | 0.00 | 33.46 | 3.01 |
124 | 125 | 4.047142 | GTGTTTTAACTCCGTCGACTTCT | 58.953 | 43.478 | 14.70 | 0.00 | 0.00 | 2.85 |
125 | 126 | 4.147826 | GTGTTTTAACTCCGTCGACTTCTC | 59.852 | 45.833 | 14.70 | 0.00 | 0.00 | 2.87 |
126 | 127 | 4.037208 | TGTTTTAACTCCGTCGACTTCTCT | 59.963 | 41.667 | 14.70 | 0.00 | 0.00 | 3.10 |
127 | 128 | 4.416505 | TTTAACTCCGTCGACTTCTCTC | 57.583 | 45.455 | 14.70 | 0.00 | 0.00 | 3.20 |
128 | 129 | 1.166989 | AACTCCGTCGACTTCTCTCC | 58.833 | 55.000 | 14.70 | 0.00 | 0.00 | 3.71 |
129 | 130 | 0.677414 | ACTCCGTCGACTTCTCTCCC | 60.677 | 60.000 | 14.70 | 0.00 | 0.00 | 4.30 |
130 | 131 | 1.707239 | CTCCGTCGACTTCTCTCCCG | 61.707 | 65.000 | 14.70 | 0.00 | 0.00 | 5.14 |
131 | 132 | 2.100603 | CGTCGACTTCTCTCCCGC | 59.899 | 66.667 | 14.70 | 0.00 | 0.00 | 6.13 |
132 | 133 | 2.490685 | GTCGACTTCTCTCCCGCC | 59.509 | 66.667 | 8.70 | 0.00 | 0.00 | 6.13 |
133 | 134 | 3.132139 | TCGACTTCTCTCCCGCCG | 61.132 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
134 | 135 | 3.132139 | CGACTTCTCTCCCGCCGA | 61.132 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
135 | 136 | 2.802106 | GACTTCTCTCCCGCCGAG | 59.198 | 66.667 | 0.00 | 0.00 | 40.30 | 4.63 |
136 | 137 | 1.749638 | GACTTCTCTCCCGCCGAGA | 60.750 | 63.158 | 0.00 | 1.11 | 45.75 | 4.04 |
141 | 142 | 2.675371 | TCTCCCGCCGAGAGAGAA | 59.325 | 61.111 | 0.00 | 0.00 | 42.97 | 2.87 |
142 | 143 | 1.001269 | TCTCCCGCCGAGAGAGAAA | 60.001 | 57.895 | 0.00 | 0.00 | 42.97 | 2.52 |
143 | 144 | 0.611062 | TCTCCCGCCGAGAGAGAAAA | 60.611 | 55.000 | 0.00 | 0.00 | 42.97 | 2.29 |
144 | 145 | 0.461961 | CTCCCGCCGAGAGAGAAAAT | 59.538 | 55.000 | 0.00 | 0.00 | 41.63 | 1.82 |
145 | 146 | 1.681793 | CTCCCGCCGAGAGAGAAAATA | 59.318 | 52.381 | 0.00 | 0.00 | 41.63 | 1.40 |
146 | 147 | 1.407979 | TCCCGCCGAGAGAGAAAATAC | 59.592 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
161 | 162 | 8.697507 | AGAGAAAATACTGTCCATTTCAGTTT | 57.302 | 30.769 | 3.98 | 0.00 | 42.50 | 2.66 |
162 | 163 | 9.136323 | AGAGAAAATACTGTCCATTTCAGTTTT | 57.864 | 29.630 | 3.98 | 0.76 | 42.50 | 2.43 |
165 | 166 | 9.129209 | GAAAATACTGTCCATTTCAGTTTTAGC | 57.871 | 33.333 | 3.98 | 0.00 | 42.50 | 3.09 |
166 | 167 | 6.759497 | ATACTGTCCATTTCAGTTTTAGCC | 57.241 | 37.500 | 3.98 | 0.00 | 42.50 | 3.93 |
168 | 169 | 3.745799 | TGTCCATTTCAGTTTTAGCCGA | 58.254 | 40.909 | 0.00 | 0.00 | 0.00 | 5.54 |
170 | 171 | 4.764823 | TGTCCATTTCAGTTTTAGCCGAAT | 59.235 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
171 | 172 | 5.095490 | GTCCATTTCAGTTTTAGCCGAATG | 58.905 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
248 | 347 | 5.263185 | CAACGGATGTCAATTTTCGGATAC | 58.737 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
249 | 348 | 4.766375 | ACGGATGTCAATTTTCGGATACT | 58.234 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
250 | 349 | 4.570772 | ACGGATGTCAATTTTCGGATACTG | 59.429 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
259 | 358 | 6.255670 | TCAATTTTCGGATACTGACTGAATCG | 59.744 | 38.462 | 0.00 | 0.00 | 33.52 | 3.34 |
272 | 371 | 1.781429 | CTGAATCGTTATCGGCTCACG | 59.219 | 52.381 | 0.00 | 0.00 | 46.11 | 4.35 |
283 | 382 | 2.973899 | GCTCACGAAGCCTCTCCA | 59.026 | 61.111 | 0.00 | 0.00 | 45.92 | 3.86 |
284 | 383 | 1.446966 | GCTCACGAAGCCTCTCCAC | 60.447 | 63.158 | 0.00 | 0.00 | 45.92 | 4.02 |
285 | 384 | 1.967535 | CTCACGAAGCCTCTCCACA | 59.032 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
286 | 385 | 0.389166 | CTCACGAAGCCTCTCCACAC | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
288 | 387 | 0.036952 | CACGAAGCCTCTCCACACAT | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
289 | 388 | 0.036952 | ACGAAGCCTCTCCACACATG | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
310 | 567 | 6.599638 | ACATGGGCAACTCTTCTTATTACTTC | 59.400 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
332 | 589 | 3.352648 | CTGCCTAGCTAGTATCCTCCTC | 58.647 | 54.545 | 19.31 | 0.00 | 0.00 | 3.71 |
340 | 597 | 7.990886 | CCTAGCTAGTATCCTCCTCTACTTATG | 59.009 | 44.444 | 19.31 | 0.00 | 30.98 | 1.90 |
375 | 632 | 9.602568 | TTTAAGTTTCCTAAATGGGTTCAAAAC | 57.397 | 29.630 | 0.00 | 0.00 | 36.20 | 2.43 |
403 | 660 | 6.993786 | AATAAGAGCTCTAAAGTGCTTTCC | 57.006 | 37.500 | 18.59 | 0.00 | 43.90 | 3.13 |
409 | 666 | 4.276926 | AGCTCTAAAGTGCTTTCCAAAGTG | 59.723 | 41.667 | 0.00 | 0.00 | 41.50 | 3.16 |
410 | 667 | 4.557496 | GCTCTAAAGTGCTTTCCAAAGTGG | 60.557 | 45.833 | 0.00 | 0.00 | 38.28 | 4.00 |
411 | 668 | 4.787551 | TCTAAAGTGCTTTCCAAAGTGGA | 58.212 | 39.130 | 0.00 | 0.00 | 46.61 | 4.02 |
427 | 684 | 2.093235 | AGTGGAGTAGCATCTTTGGAGC | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
479 | 737 | 9.801873 | CGAATGTGATCCTATGGTAAAAATTTT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
499 | 758 | 5.467902 | TTTGCAAGCACTCAAAACATTTC | 57.532 | 34.783 | 0.00 | 0.00 | 30.19 | 2.17 |
503 | 762 | 5.010922 | TGCAAGCACTCAAAACATTTCCTAT | 59.989 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
507 | 766 | 7.759489 | AGCACTCAAAACATTTCCTATTGTA | 57.241 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
512 | 771 | 6.559810 | TCAAAACATTTCCTATTGTATGCCG | 58.440 | 36.000 | 0.00 | 0.00 | 0.00 | 5.69 |
513 | 772 | 6.151985 | TCAAAACATTTCCTATTGTATGCCGT | 59.848 | 34.615 | 0.00 | 0.00 | 0.00 | 5.68 |
515 | 774 | 7.817418 | AAACATTTCCTATTGTATGCCGTAT | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
606 | 865 | 1.144057 | CCCGAGCTACATGTCCCAC | 59.856 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
628 | 887 | 6.161381 | CACTGCTAATTTTCTTGAGGCAATT | 58.839 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
629 | 888 | 6.647895 | CACTGCTAATTTTCTTGAGGCAATTT | 59.352 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
635 | 894 | 9.868389 | CTAATTTTCTTGAGGCAATTTGTTTTC | 57.132 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
692 | 956 | 5.437289 | TTTTAGACAACTGTGGCAATCTG | 57.563 | 39.130 | 0.00 | 0.00 | 33.83 | 2.90 |
693 | 957 | 1.242076 | AGACAACTGTGGCAATCTGC | 58.758 | 50.000 | 0.00 | 0.00 | 44.08 | 4.26 |
694 | 958 | 1.202855 | AGACAACTGTGGCAATCTGCT | 60.203 | 47.619 | 0.00 | 0.00 | 44.28 | 4.24 |
695 | 959 | 0.956633 | ACAACTGTGGCAATCTGCTG | 59.043 | 50.000 | 0.00 | 0.00 | 44.28 | 4.41 |
696 | 960 | 0.388134 | CAACTGTGGCAATCTGCTGC | 60.388 | 55.000 | 0.00 | 0.00 | 44.28 | 5.25 |
697 | 961 | 0.538977 | AACTGTGGCAATCTGCTGCT | 60.539 | 50.000 | 0.00 | 0.00 | 44.28 | 4.24 |
698 | 962 | 0.959372 | ACTGTGGCAATCTGCTGCTC | 60.959 | 55.000 | 0.00 | 0.00 | 44.28 | 4.26 |
699 | 963 | 0.677098 | CTGTGGCAATCTGCTGCTCT | 60.677 | 55.000 | 0.00 | 0.00 | 44.28 | 4.09 |
700 | 964 | 0.251033 | TGTGGCAATCTGCTGCTCTT | 60.251 | 50.000 | 0.00 | 0.00 | 44.28 | 2.85 |
701 | 965 | 0.886563 | GTGGCAATCTGCTGCTCTTT | 59.113 | 50.000 | 0.00 | 0.00 | 44.28 | 2.52 |
702 | 966 | 1.271656 | GTGGCAATCTGCTGCTCTTTT | 59.728 | 47.619 | 0.00 | 0.00 | 44.28 | 2.27 |
703 | 967 | 1.965643 | TGGCAATCTGCTGCTCTTTTT | 59.034 | 42.857 | 0.00 | 0.00 | 44.28 | 1.94 |
747 | 1011 | 6.847956 | TTTTTGAGACAATGGCAAAATCAG | 57.152 | 33.333 | 10.16 | 0.00 | 40.09 | 2.90 |
748 | 1012 | 3.581024 | TGAGACAATGGCAAAATCAGC | 57.419 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
749 | 1013 | 3.159472 | TGAGACAATGGCAAAATCAGCT | 58.841 | 40.909 | 0.00 | 0.00 | 0.00 | 4.24 |
750 | 1014 | 3.575256 | TGAGACAATGGCAAAATCAGCTT | 59.425 | 39.130 | 0.00 | 0.00 | 0.00 | 3.74 |
751 | 1015 | 4.039488 | TGAGACAATGGCAAAATCAGCTTT | 59.961 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
752 | 1016 | 4.964593 | AGACAATGGCAAAATCAGCTTTT | 58.035 | 34.783 | 0.00 | 0.00 | 37.54 | 2.27 |
753 | 1017 | 5.370679 | AGACAATGGCAAAATCAGCTTTTT | 58.629 | 33.333 | 0.00 | 0.00 | 34.80 | 1.94 |
776 | 1040 | 4.470334 | TTAGGGAAATGGCAAAATCAGC | 57.530 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
777 | 1041 | 2.543635 | AGGGAAATGGCAAAATCAGCT | 58.456 | 42.857 | 0.00 | 0.00 | 0.00 | 4.24 |
794 | 1058 | 1.202940 | AGCTGTTCCTTTGTCCCCTTC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
833 | 1097 | 2.613474 | GCAAATGGAAATGCAGCCTCAA | 60.613 | 45.455 | 0.00 | 0.00 | 42.12 | 3.02 |
834 | 1098 | 3.666274 | CAAATGGAAATGCAGCCTCAAA | 58.334 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
856 | 1120 | 1.086634 | GCAGGCTGGCTAAAGACGAG | 61.087 | 60.000 | 17.64 | 0.00 | 0.00 | 4.18 |
873 | 1137 | 0.767375 | GAGCCATCCAGAGCCCATAA | 59.233 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
895 | 1159 | 1.153529 | CGCTAACGGCCCACATACA | 60.154 | 57.895 | 0.00 | 0.00 | 37.74 | 2.29 |
896 | 1160 | 1.151777 | CGCTAACGGCCCACATACAG | 61.152 | 60.000 | 0.00 | 0.00 | 37.74 | 2.74 |
897 | 1161 | 0.177141 | GCTAACGGCCCACATACAGA | 59.823 | 55.000 | 0.00 | 0.00 | 34.27 | 3.41 |
1271 | 1566 | 0.611200 | TTCACTGTACCCATCACCCG | 59.389 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1304 | 1620 | 4.935885 | CAATCTTGCTTGGTAGTCTCAC | 57.064 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1305 | 1621 | 4.573900 | CAATCTTGCTTGGTAGTCTCACT | 58.426 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1306 | 1622 | 3.944055 | TCTTGCTTGGTAGTCTCACTC | 57.056 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1307 | 1623 | 2.229062 | TCTTGCTTGGTAGTCTCACTCG | 59.771 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1308 | 1624 | 1.617322 | TGCTTGGTAGTCTCACTCGT | 58.383 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1309 | 1625 | 1.540267 | TGCTTGGTAGTCTCACTCGTC | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
1310 | 1626 | 1.813786 | GCTTGGTAGTCTCACTCGTCT | 59.186 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
1311 | 1627 | 2.414824 | GCTTGGTAGTCTCACTCGTCTG | 60.415 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
1312 | 1628 | 2.853235 | TGGTAGTCTCACTCGTCTGA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1313 | 1629 | 3.136009 | TGGTAGTCTCACTCGTCTGAA | 57.864 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
1314 | 1630 | 3.687125 | TGGTAGTCTCACTCGTCTGAAT | 58.313 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1315 | 1631 | 4.840271 | TGGTAGTCTCACTCGTCTGAATA | 58.160 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
1316 | 1632 | 5.437946 | TGGTAGTCTCACTCGTCTGAATAT | 58.562 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
1317 | 1633 | 5.886474 | TGGTAGTCTCACTCGTCTGAATATT | 59.114 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
1318 | 1634 | 6.183360 | TGGTAGTCTCACTCGTCTGAATATTG | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 1.90 |
1319 | 1635 | 5.906113 | AGTCTCACTCGTCTGAATATTGT | 57.094 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
1320 | 1636 | 5.645624 | AGTCTCACTCGTCTGAATATTGTG | 58.354 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
1321 | 1637 | 4.800993 | GTCTCACTCGTCTGAATATTGTGG | 59.199 | 45.833 | 0.00 | 0.00 | 0.00 | 4.17 |
1322 | 1638 | 3.521560 | TCACTCGTCTGAATATTGTGGC | 58.478 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
1323 | 1639 | 3.056179 | TCACTCGTCTGAATATTGTGGCA | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
1324 | 1640 | 3.873361 | CACTCGTCTGAATATTGTGGCAT | 59.127 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1325 | 1641 | 4.333649 | CACTCGTCTGAATATTGTGGCATT | 59.666 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
1326 | 1642 | 4.333649 | ACTCGTCTGAATATTGTGGCATTG | 59.666 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
1327 | 1643 | 3.065233 | TCGTCTGAATATTGTGGCATTGC | 59.935 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
1328 | 1644 | 3.065786 | CGTCTGAATATTGTGGCATTGCT | 59.934 | 43.478 | 8.82 | 0.00 | 0.00 | 3.91 |
1329 | 1645 | 4.439153 | CGTCTGAATATTGTGGCATTGCTT | 60.439 | 41.667 | 8.82 | 0.00 | 0.00 | 3.91 |
1330 | 1646 | 4.802039 | GTCTGAATATTGTGGCATTGCTTG | 59.198 | 41.667 | 8.82 | 0.00 | 0.00 | 4.01 |
1331 | 1647 | 4.116961 | CTGAATATTGTGGCATTGCTTGG | 58.883 | 43.478 | 8.82 | 0.00 | 0.00 | 3.61 |
1332 | 1648 | 3.514706 | TGAATATTGTGGCATTGCTTGGT | 59.485 | 39.130 | 8.82 | 0.00 | 0.00 | 3.67 |
1333 | 1649 | 4.708909 | TGAATATTGTGGCATTGCTTGGTA | 59.291 | 37.500 | 8.82 | 0.00 | 0.00 | 3.25 |
1334 | 1650 | 4.654091 | ATATTGTGGCATTGCTTGGTAC | 57.346 | 40.909 | 8.82 | 1.82 | 0.00 | 3.34 |
1375 | 1713 | 1.350684 | TGGCATTGCTTGGTAGTCTGA | 59.649 | 47.619 | 8.82 | 0.00 | 0.00 | 3.27 |
1378 | 1716 | 3.065925 | GGCATTGCTTGGTAGTCTGATTC | 59.934 | 47.826 | 8.82 | 0.00 | 0.00 | 2.52 |
1379 | 1717 | 3.242543 | GCATTGCTTGGTAGTCTGATTCG | 60.243 | 47.826 | 0.16 | 0.00 | 0.00 | 3.34 |
1380 | 1718 | 3.678056 | TTGCTTGGTAGTCTGATTCGT | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
1382 | 1720 | 2.826128 | TGCTTGGTAGTCTGATTCGTCT | 59.174 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
1384 | 1722 | 3.119459 | GCTTGGTAGTCTGATTCGTCTGA | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
1385 | 1723 | 4.618460 | GCTTGGTAGTCTGATTCGTCTGAA | 60.618 | 45.833 | 0.00 | 0.00 | 38.76 | 3.02 |
1387 | 1725 | 4.998788 | TGGTAGTCTGATTCGTCTGAATG | 58.001 | 43.478 | 0.00 | 0.00 | 44.79 | 2.67 |
1388 | 1726 | 4.462834 | TGGTAGTCTGATTCGTCTGAATGT | 59.537 | 41.667 | 0.00 | 0.00 | 44.79 | 2.71 |
1389 | 1727 | 5.038033 | GGTAGTCTGATTCGTCTGAATGTC | 58.962 | 45.833 | 0.00 | 0.00 | 44.79 | 3.06 |
1390 | 1728 | 4.790765 | AGTCTGATTCGTCTGAATGTCA | 57.209 | 40.909 | 0.00 | 0.00 | 44.79 | 3.58 |
1391 | 1729 | 5.336150 | AGTCTGATTCGTCTGAATGTCAT | 57.664 | 39.130 | 0.00 | 0.00 | 44.79 | 3.06 |
1392 | 1730 | 5.107824 | AGTCTGATTCGTCTGAATGTCATG | 58.892 | 41.667 | 0.00 | 0.00 | 44.79 | 3.07 |
1393 | 1731 | 4.269603 | GTCTGATTCGTCTGAATGTCATGG | 59.730 | 45.833 | 0.00 | 0.00 | 44.79 | 3.66 |
1394 | 1732 | 2.938451 | TGATTCGTCTGAATGTCATGGC | 59.062 | 45.455 | 0.00 | 0.00 | 44.79 | 4.40 |
1395 | 1733 | 2.470983 | TTCGTCTGAATGTCATGGCA | 57.529 | 45.000 | 0.60 | 0.60 | 0.00 | 4.92 |
1408 | 1746 | 2.098117 | GTCATGGCATTGCTTGGTAGTC | 59.902 | 50.000 | 8.82 | 0.00 | 0.00 | 2.59 |
1478 | 1831 | 0.763035 | ACTACGGGTGCAGAAAAGGT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1685 | 2038 | 0.040067 | GGTTCCTCAAACAGCGCAAG | 60.040 | 55.000 | 11.47 | 3.78 | 39.81 | 4.01 |
1787 | 2146 | 2.206576 | ACTGGAGATCCTTTGCCAAC | 57.793 | 50.000 | 0.00 | 0.00 | 36.82 | 3.77 |
1789 | 2148 | 2.089980 | CTGGAGATCCTTTGCCAACAG | 58.910 | 52.381 | 0.00 | 0.00 | 36.82 | 3.16 |
1870 | 2237 | 3.392882 | TCAGGCACTATGACATATTGCG | 58.607 | 45.455 | 23.64 | 15.05 | 40.92 | 4.85 |
1902 | 2269 | 3.003480 | GGTGATGGTTACTCTCAACAGC | 58.997 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1908 | 2275 | 0.670546 | TTACTCTCAACAGCTGCCGC | 60.671 | 55.000 | 15.27 | 0.00 | 0.00 | 6.53 |
1958 | 2325 | 0.804989 | GGTGTGAATTCAGCTTCCGG | 59.195 | 55.000 | 8.80 | 0.00 | 33.69 | 5.14 |
2019 | 2386 | 3.557054 | GGCAGTTTATCTCACTGGTCACA | 60.557 | 47.826 | 2.43 | 0.00 | 41.81 | 3.58 |
2030 | 2397 | 1.002257 | TGGTCACAATGGCGAGCAT | 60.002 | 52.632 | 3.28 | 0.00 | 34.88 | 3.79 |
2253 | 2625 | 1.398390 | GACAATGCTTACAGGCCTTCG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
2286 | 2658 | 0.240678 | TGTGCTGTGCATTAAAGGCG | 59.759 | 50.000 | 0.00 | 0.00 | 41.91 | 5.52 |
2324 | 2696 | 0.478072 | ATCAAGGGGTGCTGTTGACA | 59.522 | 50.000 | 0.00 | 0.00 | 33.16 | 3.58 |
2368 | 2740 | 5.759059 | TGATTTCTCCATTCCAGTAGCATT | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
2421 | 2793 | 3.686016 | TGGCTGTGGTTTCTTAGGAATC | 58.314 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2630 | 3007 | 7.701924 | GTGATGATGTTCAAGAAACTTTGTCAA | 59.298 | 33.333 | 0.00 | 0.00 | 38.76 | 3.18 |
2647 | 3024 | 3.493129 | TGTCAACAGAAGCGACAACATAC | 59.507 | 43.478 | 0.00 | 0.00 | 36.75 | 2.39 |
2697 | 3074 | 6.640907 | CGACGAGTTGACATCCAAATATATGA | 59.359 | 38.462 | 0.00 | 0.00 | 36.36 | 2.15 |
2787 | 3175 | 0.252375 | AGCAAAACCCATCCAGCCAT | 60.252 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2788 | 3176 | 1.006998 | AGCAAAACCCATCCAGCCATA | 59.993 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2828 | 3216 | 0.471617 | AAGGAAGGAGATCATGCCGG | 59.528 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2838 | 3226 | 1.028330 | ATCATGCCGGTGACAGCAAG | 61.028 | 55.000 | 1.90 | 0.04 | 43.36 | 4.01 |
3042 | 3430 | 1.195115 | TCCTGCGCTTGGAAGAGTAT | 58.805 | 50.000 | 17.84 | 0.00 | 0.00 | 2.12 |
3174 | 3592 | 2.512056 | TCAAGTTCTTGGGGGTGAAGAA | 59.488 | 45.455 | 11.82 | 0.00 | 37.15 | 2.52 |
3199 | 3617 | 3.991773 | TCTGAAATTTACGGTGAAGTCGG | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3219 | 3637 | 1.741770 | GCAGAGGCAGGTTACCGTG | 60.742 | 63.158 | 0.00 | 0.00 | 40.72 | 4.94 |
3307 | 3725 | 0.387622 | CTGTTCATGCAACAAGCCGG | 60.388 | 55.000 | 0.00 | 0.00 | 44.71 | 6.13 |
3465 | 3883 | 5.747565 | TCACGCAACTACAGAAAGAATTTG | 58.252 | 37.500 | 0.00 | 0.00 | 39.27 | 2.32 |
3495 | 3913 | 8.178964 | CGCTACTACAGAGATATTAGACCATTC | 58.821 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
3498 | 3916 | 8.330466 | ACTACAGAGATATTAGACCATTCGAG | 57.670 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
3590 | 4008 | 1.719117 | CACAAACTGCCGTTGTCGT | 59.281 | 52.632 | 0.00 | 0.00 | 32.65 | 4.34 |
3680 | 4098 | 5.353678 | CAGAAGAATCAAGAACCTAGCCAAG | 59.646 | 44.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3687 | 4105 | 4.137543 | CAAGAACCTAGCCAAGTTTGAGT | 58.862 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
48 | 49 | 2.666190 | TTCCTCGCTGCACTGTGC | 60.666 | 61.111 | 25.15 | 25.15 | 45.29 | 4.57 |
49 | 50 | 2.675056 | GCTTCCTCGCTGCACTGTG | 61.675 | 63.158 | 2.76 | 2.76 | 0.00 | 3.66 |
80 | 81 | 3.305398 | GTGAAGACGACAAGGACTGAT | 57.695 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
112 | 113 | 1.744368 | CGGGAGAGAAGTCGACGGA | 60.744 | 63.158 | 10.46 | 0.00 | 0.00 | 4.69 |
113 | 114 | 2.792599 | CGGGAGAGAAGTCGACGG | 59.207 | 66.667 | 10.46 | 0.00 | 0.00 | 4.79 |
114 | 115 | 2.100603 | GCGGGAGAGAAGTCGACG | 59.899 | 66.667 | 10.46 | 0.00 | 0.00 | 5.12 |
115 | 116 | 2.490685 | GGCGGGAGAGAAGTCGAC | 59.509 | 66.667 | 7.70 | 7.70 | 0.00 | 4.20 |
116 | 117 | 3.132139 | CGGCGGGAGAGAAGTCGA | 61.132 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
117 | 118 | 3.114647 | CTCGGCGGGAGAGAAGTCG | 62.115 | 68.421 | 0.00 | 0.00 | 46.23 | 4.18 |
118 | 119 | 1.749638 | TCTCGGCGGGAGAGAAGTC | 60.750 | 63.158 | 4.77 | 0.00 | 46.80 | 3.01 |
119 | 120 | 2.355502 | TCTCGGCGGGAGAGAAGT | 59.644 | 61.111 | 4.77 | 0.00 | 46.80 | 3.01 |
125 | 126 | 0.461961 | ATTTTCTCTCTCGGCGGGAG | 59.538 | 55.000 | 30.32 | 30.32 | 44.58 | 4.30 |
126 | 127 | 1.407979 | GTATTTTCTCTCTCGGCGGGA | 59.592 | 52.381 | 10.05 | 10.05 | 0.00 | 5.14 |
127 | 128 | 1.409427 | AGTATTTTCTCTCTCGGCGGG | 59.591 | 52.381 | 7.21 | 2.41 | 0.00 | 6.13 |
128 | 129 | 2.159226 | ACAGTATTTTCTCTCTCGGCGG | 60.159 | 50.000 | 7.21 | 0.00 | 0.00 | 6.13 |
129 | 130 | 3.109619 | GACAGTATTTTCTCTCTCGGCG | 58.890 | 50.000 | 0.00 | 0.00 | 0.00 | 6.46 |
130 | 131 | 3.119101 | TGGACAGTATTTTCTCTCTCGGC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 5.54 |
131 | 132 | 4.720649 | TGGACAGTATTTTCTCTCTCGG | 57.279 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
132 | 133 | 6.813649 | TGAAATGGACAGTATTTTCTCTCTCG | 59.186 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
133 | 134 | 7.821846 | ACTGAAATGGACAGTATTTTCTCTCTC | 59.178 | 37.037 | 0.00 | 0.00 | 45.10 | 3.20 |
134 | 135 | 7.684529 | ACTGAAATGGACAGTATTTTCTCTCT | 58.315 | 34.615 | 0.00 | 0.00 | 45.10 | 3.10 |
135 | 136 | 7.913674 | ACTGAAATGGACAGTATTTTCTCTC | 57.086 | 36.000 | 0.00 | 0.00 | 45.10 | 3.20 |
136 | 137 | 8.697507 | AAACTGAAATGGACAGTATTTTCTCT | 57.302 | 30.769 | 0.00 | 0.00 | 46.01 | 3.10 |
139 | 140 | 9.129209 | GCTAAAACTGAAATGGACAGTATTTTC | 57.871 | 33.333 | 0.00 | 0.00 | 46.01 | 2.29 |
140 | 141 | 8.088365 | GGCTAAAACTGAAATGGACAGTATTTT | 58.912 | 33.333 | 0.00 | 0.00 | 46.01 | 1.82 |
141 | 142 | 7.574967 | CGGCTAAAACTGAAATGGACAGTATTT | 60.575 | 37.037 | 0.00 | 0.00 | 46.01 | 1.40 |
142 | 143 | 6.128007 | CGGCTAAAACTGAAATGGACAGTATT | 60.128 | 38.462 | 0.00 | 0.00 | 46.01 | 1.89 |
143 | 144 | 5.354234 | CGGCTAAAACTGAAATGGACAGTAT | 59.646 | 40.000 | 0.00 | 0.00 | 46.01 | 2.12 |
144 | 145 | 4.693566 | CGGCTAAAACTGAAATGGACAGTA | 59.306 | 41.667 | 0.00 | 0.00 | 46.01 | 2.74 |
146 | 147 | 3.751175 | TCGGCTAAAACTGAAATGGACAG | 59.249 | 43.478 | 0.00 | 0.00 | 40.68 | 3.51 |
161 | 162 | 5.957842 | AAAAGATCACAACATTCGGCTAA | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 3.09 |
162 | 163 | 7.201696 | GGAATAAAAGATCACAACATTCGGCTA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
163 | 164 | 6.404734 | GGAATAAAAGATCACAACATTCGGCT | 60.405 | 38.462 | 0.00 | 0.00 | 0.00 | 5.52 |
164 | 165 | 5.743872 | GGAATAAAAGATCACAACATTCGGC | 59.256 | 40.000 | 0.00 | 0.00 | 0.00 | 5.54 |
165 | 166 | 5.965334 | CGGAATAAAAGATCACAACATTCGG | 59.035 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
166 | 167 | 6.771076 | TCGGAATAAAAGATCACAACATTCG | 58.229 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
168 | 169 | 7.390440 | TGTCTCGGAATAAAAGATCACAACATT | 59.610 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
170 | 171 | 6.227522 | TGTCTCGGAATAAAAGATCACAACA | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
171 | 172 | 6.183360 | CCTGTCTCGGAATAAAAGATCACAAC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
213 | 312 | 2.928396 | CCGTTGGGAGGGTCCAGT | 60.928 | 66.667 | 0.00 | 0.00 | 38.64 | 4.00 |
214 | 313 | 2.606519 | TCCGTTGGGAGGGTCCAG | 60.607 | 66.667 | 0.00 | 0.00 | 38.64 | 3.86 |
248 | 347 | 3.046390 | GAGCCGATAACGATTCAGTCAG | 58.954 | 50.000 | 0.00 | 0.00 | 42.66 | 3.51 |
249 | 348 | 2.425668 | TGAGCCGATAACGATTCAGTCA | 59.574 | 45.455 | 0.00 | 0.00 | 42.66 | 3.41 |
250 | 349 | 2.789893 | GTGAGCCGATAACGATTCAGTC | 59.210 | 50.000 | 0.00 | 0.00 | 42.66 | 3.51 |
281 | 380 | 0.883833 | GAAGAGTTGCCCATGTGTGG | 59.116 | 55.000 | 0.00 | 0.00 | 45.61 | 4.17 |
282 | 381 | 1.901591 | AGAAGAGTTGCCCATGTGTG | 58.098 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
283 | 382 | 2.664402 | AAGAAGAGTTGCCCATGTGT | 57.336 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
284 | 383 | 5.882557 | AGTAATAAGAAGAGTTGCCCATGTG | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
285 | 384 | 6.067217 | AGTAATAAGAAGAGTTGCCCATGT | 57.933 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
286 | 385 | 6.038714 | GGAAGTAATAAGAAGAGTTGCCCATG | 59.961 | 42.308 | 0.00 | 0.00 | 0.00 | 3.66 |
288 | 387 | 5.250774 | AGGAAGTAATAAGAAGAGTTGCCCA | 59.749 | 40.000 | 0.00 | 0.00 | 0.00 | 5.36 |
289 | 388 | 5.586643 | CAGGAAGTAATAAGAAGAGTTGCCC | 59.413 | 44.000 | 0.00 | 0.00 | 0.00 | 5.36 |
290 | 389 | 5.065346 | GCAGGAAGTAATAAGAAGAGTTGCC | 59.935 | 44.000 | 0.00 | 0.00 | 0.00 | 4.52 |
291 | 390 | 5.065346 | GGCAGGAAGTAATAAGAAGAGTTGC | 59.935 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
292 | 391 | 6.410540 | AGGCAGGAAGTAATAAGAAGAGTTG | 58.589 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
293 | 392 | 6.628644 | AGGCAGGAAGTAATAAGAAGAGTT | 57.371 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
295 | 394 | 6.041523 | AGCTAGGCAGGAAGTAATAAGAAGAG | 59.958 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
297 | 396 | 6.168270 | AGCTAGGCAGGAAGTAATAAGAAG | 57.832 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
340 | 597 | 9.692749 | CCATTTAGGAAACTTAAAAGAAAGACC | 57.307 | 33.333 | 0.00 | 0.00 | 43.67 | 3.85 |
403 | 660 | 4.326826 | TCCAAAGATGCTACTCCACTTTG | 58.673 | 43.478 | 0.00 | 0.00 | 43.61 | 2.77 |
409 | 666 | 2.698855 | TGCTCCAAAGATGCTACTCC | 57.301 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
410 | 667 | 5.363939 | ACTATTGCTCCAAAGATGCTACTC | 58.636 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
411 | 668 | 5.365021 | ACTATTGCTCCAAAGATGCTACT | 57.635 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
412 | 669 | 6.442513 | AAACTATTGCTCCAAAGATGCTAC | 57.557 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
413 | 670 | 7.466746 | AAAAACTATTGCTCCAAAGATGCTA | 57.533 | 32.000 | 0.00 | 0.00 | 0.00 | 3.49 |
439 | 697 | 1.019278 | CATTCGTGGAAGTCGTGGGG | 61.019 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
451 | 709 | 6.918892 | TTTTACCATAGGATCACATTCGTG | 57.081 | 37.500 | 0.00 | 0.00 | 45.08 | 4.35 |
469 | 727 | 7.748241 | TGTTTTGAGTGCTTGCAAAATTTTTAC | 59.252 | 29.630 | 0.00 | 0.00 | 43.37 | 2.01 |
471 | 729 | 6.675987 | TGTTTTGAGTGCTTGCAAAATTTTT | 58.324 | 28.000 | 0.00 | 0.00 | 43.37 | 1.94 |
479 | 737 | 3.132646 | AGGAAATGTTTTGAGTGCTTGCA | 59.867 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
480 | 738 | 3.721035 | AGGAAATGTTTTGAGTGCTTGC | 58.279 | 40.909 | 0.00 | 0.00 | 0.00 | 4.01 |
606 | 865 | 6.647895 | ACAAATTGCCTCAAGAAAATTAGCAG | 59.352 | 34.615 | 0.00 | 0.00 | 0.00 | 4.24 |
674 | 938 | 1.202855 | AGCAGATTGCCACAGTTGTCT | 60.203 | 47.619 | 0.00 | 0.00 | 46.52 | 3.41 |
675 | 939 | 1.068748 | CAGCAGATTGCCACAGTTGTC | 60.069 | 52.381 | 0.00 | 0.00 | 46.52 | 3.18 |
676 | 940 | 0.956633 | CAGCAGATTGCCACAGTTGT | 59.043 | 50.000 | 0.00 | 0.00 | 46.52 | 3.32 |
677 | 941 | 0.388134 | GCAGCAGATTGCCACAGTTG | 60.388 | 55.000 | 0.00 | 0.00 | 46.52 | 3.16 |
678 | 942 | 0.538977 | AGCAGCAGATTGCCACAGTT | 60.539 | 50.000 | 0.00 | 0.00 | 46.52 | 3.16 |
679 | 943 | 0.959372 | GAGCAGCAGATTGCCACAGT | 60.959 | 55.000 | 0.00 | 0.00 | 46.52 | 3.55 |
680 | 944 | 0.677098 | AGAGCAGCAGATTGCCACAG | 60.677 | 55.000 | 0.00 | 0.00 | 46.52 | 3.66 |
681 | 945 | 0.251033 | AAGAGCAGCAGATTGCCACA | 60.251 | 50.000 | 0.00 | 0.00 | 46.52 | 4.17 |
682 | 946 | 0.886563 | AAAGAGCAGCAGATTGCCAC | 59.113 | 50.000 | 0.00 | 0.00 | 46.52 | 5.01 |
683 | 947 | 1.624336 | AAAAGAGCAGCAGATTGCCA | 58.376 | 45.000 | 0.00 | 0.00 | 46.52 | 4.92 |
684 | 948 | 2.738013 | AAAAAGAGCAGCAGATTGCC | 57.262 | 45.000 | 0.00 | 0.00 | 46.52 | 4.52 |
724 | 988 | 5.236911 | GCTGATTTTGCCATTGTCTCAAAAA | 59.763 | 36.000 | 10.56 | 0.00 | 41.26 | 1.94 |
725 | 989 | 4.751098 | GCTGATTTTGCCATTGTCTCAAAA | 59.249 | 37.500 | 9.54 | 9.54 | 41.86 | 2.44 |
726 | 990 | 4.039488 | AGCTGATTTTGCCATTGTCTCAAA | 59.961 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
727 | 991 | 3.575256 | AGCTGATTTTGCCATTGTCTCAA | 59.425 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
728 | 992 | 3.159472 | AGCTGATTTTGCCATTGTCTCA | 58.841 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
729 | 993 | 3.863142 | AGCTGATTTTGCCATTGTCTC | 57.137 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
730 | 994 | 4.612264 | AAAGCTGATTTTGCCATTGTCT | 57.388 | 36.364 | 0.00 | 0.00 | 0.00 | 3.41 |
731 | 995 | 5.678132 | AAAAAGCTGATTTTGCCATTGTC | 57.322 | 34.783 | 4.20 | 0.00 | 40.27 | 3.18 |
752 | 1016 | 5.704978 | GCTGATTTTGCCATTTCCCTAAAAA | 59.295 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
753 | 1017 | 5.012975 | AGCTGATTTTGCCATTTCCCTAAAA | 59.987 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
754 | 1018 | 4.531732 | AGCTGATTTTGCCATTTCCCTAAA | 59.468 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
755 | 1019 | 4.081531 | CAGCTGATTTTGCCATTTCCCTAA | 60.082 | 41.667 | 8.42 | 0.00 | 0.00 | 2.69 |
756 | 1020 | 3.448301 | CAGCTGATTTTGCCATTTCCCTA | 59.552 | 43.478 | 8.42 | 0.00 | 0.00 | 3.53 |
757 | 1021 | 2.235402 | CAGCTGATTTTGCCATTTCCCT | 59.765 | 45.455 | 8.42 | 0.00 | 0.00 | 4.20 |
758 | 1022 | 2.027837 | ACAGCTGATTTTGCCATTTCCC | 60.028 | 45.455 | 23.35 | 0.00 | 0.00 | 3.97 |
759 | 1023 | 3.323751 | ACAGCTGATTTTGCCATTTCC | 57.676 | 42.857 | 23.35 | 0.00 | 0.00 | 3.13 |
760 | 1024 | 3.681417 | GGAACAGCTGATTTTGCCATTTC | 59.319 | 43.478 | 23.35 | 9.21 | 0.00 | 2.17 |
761 | 1025 | 3.325716 | AGGAACAGCTGATTTTGCCATTT | 59.674 | 39.130 | 23.35 | 0.00 | 0.00 | 2.32 |
762 | 1026 | 2.901839 | AGGAACAGCTGATTTTGCCATT | 59.098 | 40.909 | 23.35 | 0.00 | 0.00 | 3.16 |
763 | 1027 | 2.532843 | AGGAACAGCTGATTTTGCCAT | 58.467 | 42.857 | 23.35 | 0.00 | 0.00 | 4.40 |
764 | 1028 | 1.999648 | AGGAACAGCTGATTTTGCCA | 58.000 | 45.000 | 23.35 | 0.00 | 0.00 | 4.92 |
765 | 1029 | 3.062042 | CAAAGGAACAGCTGATTTTGCC | 58.938 | 45.455 | 23.35 | 5.73 | 0.00 | 4.52 |
766 | 1030 | 3.721035 | ACAAAGGAACAGCTGATTTTGC | 58.279 | 40.909 | 23.35 | 9.96 | 0.00 | 3.68 |
767 | 1031 | 4.301628 | GGACAAAGGAACAGCTGATTTTG | 58.698 | 43.478 | 23.35 | 22.84 | 0.00 | 2.44 |
768 | 1032 | 3.321968 | GGGACAAAGGAACAGCTGATTTT | 59.678 | 43.478 | 23.35 | 11.59 | 0.00 | 1.82 |
769 | 1033 | 2.893489 | GGGACAAAGGAACAGCTGATTT | 59.107 | 45.455 | 23.35 | 12.31 | 0.00 | 2.17 |
770 | 1034 | 2.519013 | GGGACAAAGGAACAGCTGATT | 58.481 | 47.619 | 23.35 | 11.07 | 0.00 | 2.57 |
771 | 1035 | 1.272147 | GGGGACAAAGGAACAGCTGAT | 60.272 | 52.381 | 23.35 | 9.01 | 0.00 | 2.90 |
772 | 1036 | 0.110486 | GGGGACAAAGGAACAGCTGA | 59.890 | 55.000 | 23.35 | 0.00 | 0.00 | 4.26 |
773 | 1037 | 0.111253 | AGGGGACAAAGGAACAGCTG | 59.889 | 55.000 | 13.48 | 13.48 | 0.00 | 4.24 |
774 | 1038 | 0.853530 | AAGGGGACAAAGGAACAGCT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
775 | 1039 | 1.248486 | GAAGGGGACAAAGGAACAGC | 58.752 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
776 | 1040 | 1.071699 | TCGAAGGGGACAAAGGAACAG | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
777 | 1041 | 1.133363 | TCGAAGGGGACAAAGGAACA | 58.867 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
833 | 1097 | 0.401738 | TCTTTAGCCAGCCTGCTGTT | 59.598 | 50.000 | 17.23 | 8.23 | 42.77 | 3.16 |
834 | 1098 | 0.322008 | GTCTTTAGCCAGCCTGCTGT | 60.322 | 55.000 | 17.23 | 3.18 | 42.77 | 4.40 |
856 | 1120 | 0.538287 | GGTTATGGGCTCTGGATGGC | 60.538 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
891 | 1155 | 7.290014 | AGTTTTCCCTCCATTTTGTTTCTGTAT | 59.710 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
892 | 1156 | 6.609616 | AGTTTTCCCTCCATTTTGTTTCTGTA | 59.390 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
893 | 1157 | 5.425217 | AGTTTTCCCTCCATTTTGTTTCTGT | 59.575 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
895 | 1159 | 6.156083 | TGAAGTTTTCCCTCCATTTTGTTTCT | 59.844 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
896 | 1160 | 6.345298 | TGAAGTTTTCCCTCCATTTTGTTTC | 58.655 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
897 | 1161 | 6.156083 | TCTGAAGTTTTCCCTCCATTTTGTTT | 59.844 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1299 | 1615 | 4.678044 | GCCACAATATTCAGACGAGTGAGA | 60.678 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
1300 | 1616 | 3.553511 | GCCACAATATTCAGACGAGTGAG | 59.446 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1301 | 1617 | 3.056179 | TGCCACAATATTCAGACGAGTGA | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1302 | 1618 | 3.261580 | TGCCACAATATTCAGACGAGTG | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1303 | 1619 | 3.610040 | TGCCACAATATTCAGACGAGT | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
1304 | 1620 | 4.787563 | GCAATGCCACAATATTCAGACGAG | 60.788 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
1305 | 1621 | 3.065233 | GCAATGCCACAATATTCAGACGA | 59.935 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1306 | 1622 | 3.065786 | AGCAATGCCACAATATTCAGACG | 59.934 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
1307 | 1623 | 4.644103 | AGCAATGCCACAATATTCAGAC | 57.356 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
1308 | 1624 | 4.142116 | CCAAGCAATGCCACAATATTCAGA | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
1309 | 1625 | 4.116961 | CCAAGCAATGCCACAATATTCAG | 58.883 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1310 | 1626 | 3.514706 | ACCAAGCAATGCCACAATATTCA | 59.485 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1311 | 1627 | 4.127566 | ACCAAGCAATGCCACAATATTC | 57.872 | 40.909 | 0.00 | 0.00 | 0.00 | 1.75 |
1312 | 1628 | 4.711355 | AGTACCAAGCAATGCCACAATATT | 59.289 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
1313 | 1629 | 4.280819 | AGTACCAAGCAATGCCACAATAT | 58.719 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
1314 | 1630 | 3.694072 | GAGTACCAAGCAATGCCACAATA | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
1315 | 1631 | 2.493278 | GAGTACCAAGCAATGCCACAAT | 59.507 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
1316 | 1632 | 1.885887 | GAGTACCAAGCAATGCCACAA | 59.114 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
1317 | 1633 | 1.073763 | AGAGTACCAAGCAATGCCACA | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1318 | 1634 | 1.470098 | CAGAGTACCAAGCAATGCCAC | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
1319 | 1635 | 1.350684 | TCAGAGTACCAAGCAATGCCA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
1320 | 1636 | 2.113860 | TCAGAGTACCAAGCAATGCC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1321 | 1637 | 3.242543 | CGAATCAGAGTACCAAGCAATGC | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
1322 | 1638 | 3.935203 | ACGAATCAGAGTACCAAGCAATG | 59.065 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
1323 | 1639 | 4.081420 | AGACGAATCAGAGTACCAAGCAAT | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
1324 | 1640 | 3.258372 | AGACGAATCAGAGTACCAAGCAA | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
1325 | 1641 | 2.826128 | AGACGAATCAGAGTACCAAGCA | 59.174 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
1326 | 1642 | 3.119459 | TCAGACGAATCAGAGTACCAAGC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
1327 | 1643 | 4.703645 | TCAGACGAATCAGAGTACCAAG | 57.296 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
1328 | 1644 | 5.047306 | ACATTCAGACGAATCAGAGTACCAA | 60.047 | 40.000 | 0.00 | 0.00 | 39.96 | 3.67 |
1329 | 1645 | 4.462834 | ACATTCAGACGAATCAGAGTACCA | 59.537 | 41.667 | 0.00 | 0.00 | 39.96 | 3.25 |
1330 | 1646 | 5.000012 | ACATTCAGACGAATCAGAGTACC | 58.000 | 43.478 | 0.00 | 0.00 | 39.96 | 3.34 |
1331 | 1647 | 4.731000 | CGACATTCAGACGAATCAGAGTAC | 59.269 | 45.833 | 0.00 | 0.00 | 39.96 | 2.73 |
1332 | 1648 | 4.395231 | ACGACATTCAGACGAATCAGAGTA | 59.605 | 41.667 | 0.00 | 0.00 | 39.96 | 2.59 |
1333 | 1649 | 3.191581 | ACGACATTCAGACGAATCAGAGT | 59.808 | 43.478 | 0.00 | 0.00 | 39.96 | 3.24 |
1334 | 1650 | 3.545475 | CACGACATTCAGACGAATCAGAG | 59.455 | 47.826 | 0.00 | 0.00 | 39.96 | 3.35 |
1375 | 1713 | 2.989909 | TGCCATGACATTCAGACGAAT | 58.010 | 42.857 | 0.00 | 0.00 | 42.81 | 3.34 |
1378 | 1716 | 2.793585 | GCAATGCCATGACATTCAGACG | 60.794 | 50.000 | 4.02 | 0.00 | 38.19 | 4.18 |
1379 | 1717 | 2.426024 | AGCAATGCCATGACATTCAGAC | 59.574 | 45.455 | 4.02 | 0.00 | 38.19 | 3.51 |
1380 | 1718 | 2.730382 | AGCAATGCCATGACATTCAGA | 58.270 | 42.857 | 4.02 | 0.00 | 38.19 | 3.27 |
1382 | 1720 | 2.093921 | CCAAGCAATGCCATGACATTCA | 60.094 | 45.455 | 4.02 | 0.00 | 38.19 | 2.57 |
1384 | 1722 | 1.903860 | ACCAAGCAATGCCATGACATT | 59.096 | 42.857 | 0.00 | 0.80 | 40.90 | 2.71 |
1385 | 1723 | 1.563924 | ACCAAGCAATGCCATGACAT | 58.436 | 45.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1387 | 1725 | 2.094675 | ACTACCAAGCAATGCCATGAC | 58.905 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
1388 | 1726 | 2.025981 | AGACTACCAAGCAATGCCATGA | 60.026 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
1389 | 1727 | 2.098607 | CAGACTACCAAGCAATGCCATG | 59.901 | 50.000 | 0.00 | 1.14 | 0.00 | 3.66 |
1390 | 1728 | 2.025981 | TCAGACTACCAAGCAATGCCAT | 60.026 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1391 | 1729 | 1.350684 | TCAGACTACCAAGCAATGCCA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
1392 | 1730 | 2.113860 | TCAGACTACCAAGCAATGCC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1393 | 1731 | 3.242543 | CGAATCAGACTACCAAGCAATGC | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
1394 | 1732 | 3.935203 | ACGAATCAGACTACCAAGCAATG | 59.065 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
1395 | 1733 | 4.081420 | AGACGAATCAGACTACCAAGCAAT | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
1408 | 1746 | 4.568359 | CCTACCAACATTCAGACGAATCAG | 59.432 | 45.833 | 0.00 | 0.00 | 39.96 | 2.90 |
1478 | 1831 | 1.599171 | CCGTGCACGCTTGAAAAATCA | 60.599 | 47.619 | 33.17 | 0.00 | 38.18 | 2.57 |
1685 | 2038 | 3.372954 | CTCTTCGTCATACGGGTCATTC | 58.627 | 50.000 | 0.00 | 0.00 | 42.81 | 2.67 |
1758 | 2117 | 3.643237 | AGGATCTCCAGTATTTGTCGGA | 58.357 | 45.455 | 0.00 | 0.00 | 38.89 | 4.55 |
1787 | 2146 | 9.178427 | GTCACATTTCTCTTTTTCTTCAATCTG | 57.822 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
1789 | 2148 | 8.962111 | GTGTCACATTTCTCTTTTTCTTCAATC | 58.038 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
1881 | 2248 | 3.003480 | GCTGTTGAGAGTAACCATCACC | 58.997 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1888 | 2255 | 1.071605 | CGGCAGCTGTTGAGAGTAAC | 58.928 | 55.000 | 16.64 | 0.00 | 0.00 | 2.50 |
1902 | 2269 | 3.289834 | AGGCAACACAAGCGGCAG | 61.290 | 61.111 | 1.45 | 0.00 | 41.41 | 4.85 |
1908 | 2275 | 0.179020 | TCTGTCCCAGGCAACACAAG | 60.179 | 55.000 | 0.00 | 0.00 | 41.41 | 3.16 |
1958 | 2325 | 2.039348 | TGCCAGGTGTTCCTTAAGGTAC | 59.961 | 50.000 | 21.09 | 21.09 | 43.07 | 3.34 |
2019 | 2386 | 1.668419 | GGAGTAACATGCTCGCCATT | 58.332 | 50.000 | 0.00 | 0.00 | 34.00 | 3.16 |
2030 | 2397 | 3.766691 | GCCTCGGCGGGAGTAACA | 61.767 | 66.667 | 9.18 | 0.00 | 41.46 | 2.41 |
2368 | 2740 | 2.809174 | CGCACTCGACGATGGCAA | 60.809 | 61.111 | 17.50 | 0.00 | 38.10 | 4.52 |
2421 | 2793 | 2.031516 | CAACCACTGCTCGCTCCAG | 61.032 | 63.158 | 0.00 | 0.00 | 36.41 | 3.86 |
2630 | 3007 | 2.433868 | ACGTATGTTGTCGCTTCTGT | 57.566 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2647 | 3024 | 4.093556 | GCTCCTTCCAGAGTTTATCAAACG | 59.906 | 45.833 | 0.00 | 0.00 | 45.88 | 3.60 |
2697 | 3074 | 5.376625 | TCACTAGCACCAAATTCTTTCTGT | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2708 | 3087 | 1.270839 | GCACTTCCTCACTAGCACCAA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2774 | 3162 | 1.825105 | ATCAGTATGGCTGGATGGGT | 58.175 | 50.000 | 0.00 | 0.00 | 45.08 | 4.51 |
2787 | 3175 | 3.041211 | CCCATCCTCCACTGAATCAGTA | 58.959 | 50.000 | 16.28 | 0.00 | 43.43 | 2.74 |
2788 | 3176 | 1.842562 | CCCATCCTCCACTGAATCAGT | 59.157 | 52.381 | 10.56 | 10.56 | 46.51 | 3.41 |
2828 | 3216 | 4.072131 | TGTTATCTTTCCCTTGCTGTCAC | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
2838 | 3226 | 7.929941 | ATCAGAGAACTTTGTTATCTTTCCC | 57.070 | 36.000 | 5.04 | 0.00 | 0.00 | 3.97 |
3042 | 3430 | 1.996191 | GCGGCACTTGTGTTTTTGAAA | 59.004 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
3174 | 3592 | 4.642429 | ACTTCACCGTAAATTTCAGAGCT | 58.358 | 39.130 | 0.00 | 0.00 | 0.00 | 4.09 |
3199 | 3617 | 2.272471 | GGTAACCTGCCTCTGCCC | 59.728 | 66.667 | 0.00 | 0.00 | 36.33 | 5.36 |
3219 | 3637 | 5.522824 | GTGGGTATATTCCGACTTCAAGTTC | 59.477 | 44.000 | 6.32 | 0.00 | 34.21 | 3.01 |
3465 | 3883 | 4.506886 | AATATCTCTGTAGTAGCGTGGC | 57.493 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
3495 | 3913 | 0.655733 | AAGTTGGTGTTTCACGCTCG | 59.344 | 50.000 | 0.00 | 0.00 | 34.83 | 5.03 |
3498 | 3916 | 0.736053 | TCCAAGTTGGTGTTTCACGC | 59.264 | 50.000 | 21.35 | 0.00 | 39.03 | 5.34 |
3680 | 4098 | 9.950680 | TTCACAGATGATAAAAGAAACTCAAAC | 57.049 | 29.630 | 0.00 | 0.00 | 33.85 | 2.93 |
3687 | 4105 | 8.690203 | TGGAGTTTCACAGATGATAAAAGAAA | 57.310 | 30.769 | 0.00 | 0.00 | 33.85 | 2.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.