Multiple sequence alignment - TraesCS2A01G165700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G165700 chr2A 100.000 2767 0 0 1 2767 118229523 118226757 0.000000e+00 5110.0
1 TraesCS2A01G165700 chr2A 92.635 706 44 7 1 700 750533572 750532869 0.000000e+00 1009.0
2 TraesCS2A01G165700 chr2A 90.872 734 53 12 1 727 612753728 612754454 0.000000e+00 972.0
3 TraesCS2A01G165700 chr2A 81.269 1009 139 23 713 1716 118214244 118213281 0.000000e+00 771.0
4 TraesCS2A01G165700 chr2A 82.687 670 95 13 1045 1709 118222054 118221401 2.390000e-160 575.0
5 TraesCS2A01G165700 chr2A 81.769 373 49 7 715 1087 118222440 118222087 7.490000e-76 294.0
6 TraesCS2A01G165700 chr2D 90.816 1557 80 25 705 2249 116800976 116799471 0.000000e+00 2025.0
7 TraesCS2A01G165700 chr2D 83.532 1008 135 20 715 1716 116620582 116619600 0.000000e+00 913.0
8 TraesCS2A01G165700 chr2D 82.595 971 128 23 715 1680 116777166 116776232 0.000000e+00 819.0
9 TraesCS2A01G165700 chr2D 78.392 597 101 23 1026 1614 116597149 116596573 2.030000e-96 363.0
10 TraesCS2A01G165700 chr2D 79.350 431 69 9 713 1143 116645652 116645242 4.510000e-73 285.0
11 TraesCS2A01G165700 chr2D 84.314 204 26 3 927 1130 116800871 116800674 7.820000e-46 195.0
12 TraesCS2A01G165700 chr2D 92.562 121 5 4 2314 2431 114349268 114349387 1.320000e-38 171.0
13 TraesCS2A01G165700 chr2D 88.194 144 12 3 2333 2471 371841921 371841778 1.700000e-37 167.0
14 TraesCS2A01G165700 chrUn 89.946 1303 85 18 700 1989 17426227 17427496 0.000000e+00 1639.0
15 TraesCS2A01G165700 chrUn 92.514 708 43 8 1 700 307386474 307387179 0.000000e+00 1005.0
16 TraesCS2A01G165700 chrUn 82.536 836 102 24 715 1545 460199922 460200718 0.000000e+00 695.0
17 TraesCS2A01G165700 chrUn 90.000 240 12 4 2080 2318 17427508 17427736 1.610000e-77 300.0
18 TraesCS2A01G165700 chr4A 92.807 709 36 7 1 700 685312659 685311957 0.000000e+00 1013.0
19 TraesCS2A01G165700 chr4A 93.603 297 17 1 2470 2766 518118117 518118411 2.530000e-120 442.0
20 TraesCS2A01G165700 chr3B 92.361 720 34 10 1 702 670194200 670194916 0.000000e+00 1005.0
21 TraesCS2A01G165700 chr3B 91.310 725 45 12 1 709 177492144 177492866 0.000000e+00 974.0
22 TraesCS2A01G165700 chr1B 92.190 717 43 9 1 704 626131774 626131058 0.000000e+00 1002.0
23 TraesCS2A01G165700 chr7A 92.210 706 44 7 1 703 85187084 85186387 0.000000e+00 989.0
24 TraesCS2A01G165700 chr7A 93.333 300 20 0 2468 2767 573079007 573078708 7.030000e-121 444.0
25 TraesCS2A01G165700 chr7A 92.557 309 20 3 2461 2767 645255956 645255649 9.100000e-120 440.0
26 TraesCS2A01G165700 chr7A 93.069 303 16 2 2468 2765 48106052 48106354 3.270000e-119 438.0
27 TraesCS2A01G165700 chr6B 91.585 713 52 5 1 708 697430983 697430274 0.000000e+00 977.0
28 TraesCS2A01G165700 chr2B 90.327 703 46 7 705 1404 166898647 166897964 0.000000e+00 902.0
29 TraesCS2A01G165700 chr2B 87.333 600 42 12 1400 1989 166892773 166892198 0.000000e+00 656.0
30 TraesCS2A01G165700 chr2B 92.453 159 8 4 2080 2237 166892186 166892031 9.970000e-55 224.0
31 TraesCS2A01G165700 chr2B 94.393 107 6 0 2212 2318 166892024 166891918 6.130000e-37 165.0
32 TraesCS2A01G165700 chr2B 92.308 117 7 2 2317 2431 699330790 699330674 6.130000e-37 165.0
33 TraesCS2A01G165700 chr2B 96.552 58 2 0 2414 2471 484925573 484925630 2.270000e-16 97.1
34 TraesCS2A01G165700 chr3A 94.098 305 16 2 2463 2766 475394729 475394426 1.940000e-126 462.0
35 TraesCS2A01G165700 chr6D 92.667 300 22 0 2467 2766 308585918 308586217 1.520000e-117 433.0
36 TraesCS2A01G165700 chr6D 91.803 122 8 2 2312 2431 417527376 417527497 4.740000e-38 169.0
37 TraesCS2A01G165700 chr6D 90.909 121 7 4 2314 2431 159476671 159476790 2.850000e-35 159.0
38 TraesCS2A01G165700 chr6D 96.364 55 1 1 2417 2471 375484031 375483978 3.800000e-14 89.8
39 TraesCS2A01G165700 chr5D 92.929 297 20 1 2470 2766 58674354 58674059 5.470000e-117 431.0
40 TraesCS2A01G165700 chr5D 94.915 59 1 2 2414 2471 245054282 245054339 1.060000e-14 91.6
41 TraesCS2A01G165700 chr5A 92.359 301 22 1 2467 2767 165365255 165364956 7.080000e-116 427.0
42 TraesCS2A01G165700 chr1A 92.333 300 23 0 2468 2767 28616260 28615961 7.080000e-116 427.0
43 TraesCS2A01G165700 chr1A 91.597 119 8 2 2315 2431 376500436 376500554 2.200000e-36 163.0
44 TraesCS2A01G165700 chr5B 88.125 160 13 4 2315 2469 478929308 478929150 4.710000e-43 185.0
45 TraesCS2A01G165700 chr7D 91.667 120 8 2 2314 2431 554831656 554831775 6.130000e-37 165.0
46 TraesCS2A01G165700 chr7D 96.364 55 1 1 2417 2471 421647083 421647136 3.800000e-14 89.8
47 TraesCS2A01G165700 chr3D 91.597 119 8 2 2315 2431 416407301 416407183 2.200000e-36 163.0
48 TraesCS2A01G165700 chr4D 96.364 55 1 1 2417 2471 299492772 299492719 3.800000e-14 89.8
49 TraesCS2A01G165700 chr1D 91.803 61 4 1 2411 2471 267863402 267863343 1.770000e-12 84.2
50 TraesCS2A01G165700 chr1D 94.545 55 2 1 2417 2471 267864072 267864125 1.770000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G165700 chr2A 118226757 118229523 2766 True 5110.000000 5110 100.000 1 2767 1 chr2A.!!$R2 2766
1 TraesCS2A01G165700 chr2A 750532869 750533572 703 True 1009.000000 1009 92.635 1 700 1 chr2A.!!$R3 699
2 TraesCS2A01G165700 chr2A 612753728 612754454 726 False 972.000000 972 90.872 1 727 1 chr2A.!!$F1 726
3 TraesCS2A01G165700 chr2A 118213281 118214244 963 True 771.000000 771 81.269 713 1716 1 chr2A.!!$R1 1003
4 TraesCS2A01G165700 chr2A 118221401 118222440 1039 True 434.500000 575 82.228 715 1709 2 chr2A.!!$R4 994
5 TraesCS2A01G165700 chr2D 116799471 116800976 1505 True 1110.000000 2025 87.565 705 2249 2 chr2D.!!$R6 1544
6 TraesCS2A01G165700 chr2D 116619600 116620582 982 True 913.000000 913 83.532 715 1716 1 chr2D.!!$R2 1001
7 TraesCS2A01G165700 chr2D 116776232 116777166 934 True 819.000000 819 82.595 715 1680 1 chr2D.!!$R4 965
8 TraesCS2A01G165700 chr2D 116596573 116597149 576 True 363.000000 363 78.392 1026 1614 1 chr2D.!!$R1 588
9 TraesCS2A01G165700 chrUn 307386474 307387179 705 False 1005.000000 1005 92.514 1 700 1 chrUn.!!$F1 699
10 TraesCS2A01G165700 chrUn 17426227 17427736 1509 False 969.500000 1639 89.973 700 2318 2 chrUn.!!$F3 1618
11 TraesCS2A01G165700 chrUn 460199922 460200718 796 False 695.000000 695 82.536 715 1545 1 chrUn.!!$F2 830
12 TraesCS2A01G165700 chr4A 685311957 685312659 702 True 1013.000000 1013 92.807 1 700 1 chr4A.!!$R1 699
13 TraesCS2A01G165700 chr3B 670194200 670194916 716 False 1005.000000 1005 92.361 1 702 1 chr3B.!!$F2 701
14 TraesCS2A01G165700 chr3B 177492144 177492866 722 False 974.000000 974 91.310 1 709 1 chr3B.!!$F1 708
15 TraesCS2A01G165700 chr1B 626131058 626131774 716 True 1002.000000 1002 92.190 1 704 1 chr1B.!!$R1 703
16 TraesCS2A01G165700 chr7A 85186387 85187084 697 True 989.000000 989 92.210 1 703 1 chr7A.!!$R1 702
17 TraesCS2A01G165700 chr6B 697430274 697430983 709 True 977.000000 977 91.585 1 708 1 chr6B.!!$R1 707
18 TraesCS2A01G165700 chr2B 166897964 166898647 683 True 902.000000 902 90.327 705 1404 1 chr2B.!!$R1 699
19 TraesCS2A01G165700 chr2B 166891918 166892773 855 True 348.333333 656 91.393 1400 2318 3 chr2B.!!$R3 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 444 1.153901 CGTCGGCATGTAGAACCGT 60.154 57.895 8.3 0.0 46.92 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2027 1.061711 CTGCTGATCTAAACAGTGCGC 59.938 52.381 0.0 0.0 37.64 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.857521 AACGCCTCCCCACCCACTA 62.858 63.158 0.00 0.00 0.00 2.74
269 273 2.885861 GTGGTCCTCGACAGCGAT 59.114 61.111 0.00 0.00 46.80 4.58
411 427 2.579787 CGCGGTTCTACAGCCTCG 60.580 66.667 0.00 0.00 35.89 4.63
428 444 1.153901 CGTCGGCATGTAGAACCGT 60.154 57.895 8.30 0.00 46.92 4.83
488 506 1.271543 GGGTAGCCCACGGTAGTTTTT 60.272 52.381 0.00 0.00 44.65 1.94
568 590 3.684103 ATTTGAGTCGTTTTTGCGTCA 57.316 38.095 0.00 0.00 0.00 4.35
1004 1034 2.478292 GGAGGAGGAGGTGTTTATGGA 58.522 52.381 0.00 0.00 0.00 3.41
1005 1035 2.170817 GGAGGAGGAGGTGTTTATGGAC 59.829 54.545 0.00 0.00 0.00 4.02
1006 1036 1.831736 AGGAGGAGGTGTTTATGGACG 59.168 52.381 0.00 0.00 0.00 4.79
1007 1037 1.553704 GGAGGAGGTGTTTATGGACGT 59.446 52.381 0.00 0.00 0.00 4.34
1008 1038 2.418334 GGAGGAGGTGTTTATGGACGTC 60.418 54.545 7.13 7.13 0.00 4.34
1009 1039 2.232941 GAGGAGGTGTTTATGGACGTCA 59.767 50.000 18.91 3.91 0.00 4.35
1010 1040 2.838202 AGGAGGTGTTTATGGACGTCAT 59.162 45.455 18.91 11.34 39.78 3.06
1011 1041 2.936498 GGAGGTGTTTATGGACGTCATG 59.064 50.000 18.91 0.00 37.30 3.07
1012 1042 2.936498 GAGGTGTTTATGGACGTCATGG 59.064 50.000 18.91 0.00 37.30 3.66
1019 1049 3.272334 GGACGTCATGGCCGATGC 61.272 66.667 18.91 0.00 31.32 3.91
1387 1507 4.681978 AGGCGTTCGACTGGGTGC 62.682 66.667 0.00 0.00 0.00 5.01
1438 1558 2.034879 AACAAGAGCCACGCCATCG 61.035 57.895 0.00 0.00 42.43 3.84
1471 1591 4.626081 GGGACACGGTGCTGCTGT 62.626 66.667 8.30 0.00 37.11 4.40
1691 1814 0.249322 CGGCCTGGGTAACGATACTG 60.249 60.000 0.00 0.00 37.60 2.74
1700 1823 0.457035 TAACGATACTGGTGGCCGTC 59.543 55.000 0.00 0.00 32.64 4.79
1718 1841 2.036256 GGGAGCATGGTTGGCACT 59.964 61.111 0.00 0.00 0.00 4.40
1722 1845 0.890542 GAGCATGGTTGGCACTGTGA 60.891 55.000 12.86 0.00 0.00 3.58
1736 1859 3.678806 GCACTGTGATCGGGTTTCTCATA 60.679 47.826 12.86 0.00 0.00 2.15
1766 1893 3.664025 CTGCCGCGGGATTCACTGA 62.664 63.158 29.38 0.00 0.00 3.41
1791 1918 3.761218 TGAACAACAACAAGAAGAAGGCA 59.239 39.130 0.00 0.00 0.00 4.75
1844 1971 7.801716 AAGTTCAACTGCACTAGTGAATAAA 57.198 32.000 27.08 9.05 40.26 1.40
1862 1989 9.699703 GTGAATAAATCCTCTTACATCTACTCC 57.300 37.037 0.00 0.00 0.00 3.85
1863 1990 8.577296 TGAATAAATCCTCTTACATCTACTCCG 58.423 37.037 0.00 0.00 0.00 4.63
1864 1991 5.793030 AAATCCTCTTACATCTACTCCGG 57.207 43.478 0.00 0.00 0.00 5.14
1865 1992 4.726035 ATCCTCTTACATCTACTCCGGA 57.274 45.455 2.93 2.93 0.00 5.14
1866 1993 4.088056 TCCTCTTACATCTACTCCGGAG 57.912 50.000 30.11 30.11 0.00 4.63
1900 2027 6.257849 ACTCTATAATTATGGTTGTGCGTGTG 59.742 38.462 8.28 0.00 0.00 3.82
1901 2028 2.346099 AATTATGGTTGTGCGTGTGC 57.654 45.000 0.00 0.00 43.20 4.57
1913 2040 2.221676 CGTGTGCGCACTGTTTAGA 58.778 52.632 37.59 16.06 43.16 2.10
1920 2047 1.061711 GCGCACTGTTTAGATCAGCAG 59.938 52.381 0.30 0.00 36.50 4.24
1984 2118 0.039798 GCGTGTGAGTTCGTGGTCTA 60.040 55.000 0.00 0.00 0.00 2.59
1996 2130 1.797025 GTGGTCTACTGTGTTGGCTC 58.203 55.000 0.00 0.00 0.00 4.70
1997 2131 0.685097 TGGTCTACTGTGTTGGCTCC 59.315 55.000 0.00 0.00 0.00 4.70
1998 2132 0.977395 GGTCTACTGTGTTGGCTCCT 59.023 55.000 0.00 0.00 0.00 3.69
1999 2133 1.338200 GGTCTACTGTGTTGGCTCCTG 60.338 57.143 0.00 0.00 0.00 3.86
2000 2134 0.321671 TCTACTGTGTTGGCTCCTGC 59.678 55.000 0.00 0.00 38.76 4.85
2012 2146 3.496309 CTCCTGCCCTGTGCCACAA 62.496 63.158 0.00 0.00 40.16 3.33
2027 2161 5.221322 TGTGCCACAACTTAATTTGCATACA 60.221 36.000 0.00 4.17 0.00 2.29
2028 2162 5.868801 GTGCCACAACTTAATTTGCATACAT 59.131 36.000 5.53 0.00 0.00 2.29
2116 2250 7.667043 AAAGTAGTCAAATCATGCTACGAAA 57.333 32.000 0.00 0.00 40.51 3.46
2223 2358 4.304110 GCCCATAAACATGATCAATGCTG 58.696 43.478 0.00 0.00 40.22 4.41
2258 2434 0.246635 TCTCAAGTTAGTGAGCGCCC 59.753 55.000 2.29 0.00 44.01 6.13
2302 2478 3.692406 GCACGGGAGGACGAGGTT 61.692 66.667 0.00 0.00 37.61 3.50
2318 2494 1.802715 GTTACACGCGCGGCTAAGA 60.803 57.895 35.22 11.74 0.00 2.10
2319 2495 1.802715 TTACACGCGCGGCTAAGAC 60.803 57.895 35.22 0.00 0.00 3.01
2320 2496 2.203972 TTACACGCGCGGCTAAGACT 62.204 55.000 35.22 7.19 0.00 3.24
2321 2497 1.368345 TACACGCGCGGCTAAGACTA 61.368 55.000 35.22 7.75 0.00 2.59
2322 2498 2.101770 ACGCGCGGCTAAGACTAC 59.898 61.111 35.22 0.00 0.00 2.73
2323 2499 2.654404 CGCGCGGCTAAGACTACC 60.654 66.667 24.84 0.00 0.00 3.18
2324 2500 2.279318 GCGCGGCTAAGACTACCC 60.279 66.667 8.83 0.00 0.00 3.69
2325 2501 3.072486 GCGCGGCTAAGACTACCCA 62.072 63.158 8.83 0.00 0.00 4.51
2326 2502 1.226888 CGCGGCTAAGACTACCCAC 60.227 63.158 0.00 0.00 0.00 4.61
2327 2503 1.895238 GCGGCTAAGACTACCCACA 59.105 57.895 0.00 0.00 0.00 4.17
2328 2504 0.248289 GCGGCTAAGACTACCCACAA 59.752 55.000 0.00 0.00 0.00 3.33
2329 2505 1.134491 GCGGCTAAGACTACCCACAAT 60.134 52.381 0.00 0.00 0.00 2.71
2330 2506 2.550978 CGGCTAAGACTACCCACAATG 58.449 52.381 0.00 0.00 0.00 2.82
2331 2507 2.167693 CGGCTAAGACTACCCACAATGA 59.832 50.000 0.00 0.00 0.00 2.57
2332 2508 3.738281 CGGCTAAGACTACCCACAATGAG 60.738 52.174 0.00 0.00 0.00 2.90
2333 2509 3.451178 GGCTAAGACTACCCACAATGAGA 59.549 47.826 0.00 0.00 0.00 3.27
2334 2510 4.442192 GGCTAAGACTACCCACAATGAGAG 60.442 50.000 0.00 0.00 0.00 3.20
2335 2511 4.160626 GCTAAGACTACCCACAATGAGAGT 59.839 45.833 0.00 0.00 0.00 3.24
2336 2512 5.360144 GCTAAGACTACCCACAATGAGAGTA 59.640 44.000 0.00 0.00 0.00 2.59
2337 2513 6.127423 GCTAAGACTACCCACAATGAGAGTAA 60.127 42.308 0.00 0.00 0.00 2.24
2338 2514 5.662674 AGACTACCCACAATGAGAGTAAC 57.337 43.478 0.00 0.00 0.00 2.50
2339 2515 5.084519 AGACTACCCACAATGAGAGTAACA 58.915 41.667 0.00 0.00 0.00 2.41
2340 2516 5.721960 AGACTACCCACAATGAGAGTAACAT 59.278 40.000 0.00 0.00 0.00 2.71
2341 2517 6.895756 AGACTACCCACAATGAGAGTAACATA 59.104 38.462 0.00 0.00 0.00 2.29
2342 2518 7.565398 AGACTACCCACAATGAGAGTAACATAT 59.435 37.037 0.00 0.00 0.00 1.78
2343 2519 7.500992 ACTACCCACAATGAGAGTAACATATG 58.499 38.462 0.00 0.00 0.00 1.78
2344 2520 6.313519 ACCCACAATGAGAGTAACATATGT 57.686 37.500 1.41 1.41 0.00 2.29
2345 2521 7.432148 ACCCACAATGAGAGTAACATATGTA 57.568 36.000 9.21 0.00 0.00 2.29
2346 2522 7.500992 ACCCACAATGAGAGTAACATATGTAG 58.499 38.462 9.21 0.00 0.00 2.74
2347 2523 7.125811 ACCCACAATGAGAGTAACATATGTAGT 59.874 37.037 9.21 0.00 0.00 2.73
2348 2524 8.638873 CCCACAATGAGAGTAACATATGTAGTA 58.361 37.037 9.21 0.00 0.00 1.82
2399 2575 9.491675 AAATGATGTGACAAGCAATAAATGAAA 57.508 25.926 0.00 0.00 0.00 2.69
2400 2576 9.491675 AATGATGTGACAAGCAATAAATGAAAA 57.508 25.926 0.00 0.00 0.00 2.29
2401 2577 8.883954 TGATGTGACAAGCAATAAATGAAAAA 57.116 26.923 0.00 0.00 0.00 1.94
2434 2610 5.774179 TGGTAACATAGCTAGTTACTCCCT 58.226 41.667 27.05 0.63 46.49 4.20
2435 2611 5.832060 TGGTAACATAGCTAGTTACTCCCTC 59.168 44.000 27.05 18.37 46.49 4.30
2436 2612 5.243507 GGTAACATAGCTAGTTACTCCCTCC 59.756 48.000 27.05 16.24 46.49 4.30
2437 2613 4.817874 ACATAGCTAGTTACTCCCTCCT 57.182 45.455 0.00 0.00 0.00 3.69
2438 2614 5.145513 ACATAGCTAGTTACTCCCTCCTT 57.854 43.478 0.00 0.00 0.00 3.36
2439 2615 5.530243 ACATAGCTAGTTACTCCCTCCTTT 58.470 41.667 0.00 0.00 0.00 3.11
2440 2616 5.599242 ACATAGCTAGTTACTCCCTCCTTTC 59.401 44.000 0.00 0.00 0.00 2.62
2441 2617 3.376636 AGCTAGTTACTCCCTCCTTTCC 58.623 50.000 0.00 0.00 0.00 3.13
2442 2618 2.101082 GCTAGTTACTCCCTCCTTTCCG 59.899 54.545 0.00 0.00 0.00 4.30
2443 2619 1.569653 AGTTACTCCCTCCTTTCCGG 58.430 55.000 0.00 0.00 0.00 5.14
2444 2620 1.203275 AGTTACTCCCTCCTTTCCGGT 60.203 52.381 0.00 0.00 0.00 5.28
2445 2621 1.627329 GTTACTCCCTCCTTTCCGGTT 59.373 52.381 0.00 0.00 0.00 4.44
2446 2622 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
2447 2623 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
2448 2624 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
2449 2625 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
2450 2626 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
2451 2627 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
2452 2628 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
2453 2629 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
2454 2630 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
2455 2631 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
2456 2632 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
2457 2633 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
2458 2634 5.001874 CCTTTCCGGTTTATAGGGCTTATC 58.998 45.833 0.00 0.00 0.00 1.75
2459 2635 5.221864 CCTTTCCGGTTTATAGGGCTTATCT 60.222 44.000 0.00 0.00 0.00 1.98
2460 2636 5.479124 TTCCGGTTTATAGGGCTTATCTC 57.521 43.478 0.00 0.00 0.00 2.75
2461 2637 3.508793 TCCGGTTTATAGGGCTTATCTCG 59.491 47.826 0.00 0.00 0.00 4.04
2462 2638 3.508793 CCGGTTTATAGGGCTTATCTCGA 59.491 47.826 0.00 0.00 0.00 4.04
2463 2639 4.021719 CCGGTTTATAGGGCTTATCTCGAA 60.022 45.833 0.00 0.00 0.00 3.71
2464 2640 5.510179 CCGGTTTATAGGGCTTATCTCGAAA 60.510 44.000 0.00 0.00 0.00 3.46
2465 2641 6.164176 CGGTTTATAGGGCTTATCTCGAAAT 58.836 40.000 0.00 0.00 0.00 2.17
2466 2642 6.649557 CGGTTTATAGGGCTTATCTCGAAATT 59.350 38.462 0.00 0.00 0.00 1.82
2467 2643 7.172703 CGGTTTATAGGGCTTATCTCGAAATTT 59.827 37.037 0.00 0.00 0.00 1.82
2468 2644 8.847196 GGTTTATAGGGCTTATCTCGAAATTTT 58.153 33.333 0.00 0.00 0.00 1.82
2471 2647 9.720769 TTATAGGGCTTATCTCGAAATTTTAGG 57.279 33.333 0.00 0.00 0.00 2.69
2472 2648 6.002653 AGGGCTTATCTCGAAATTTTAGGT 57.997 37.500 0.00 0.00 0.00 3.08
2473 2649 6.056236 AGGGCTTATCTCGAAATTTTAGGTC 58.944 40.000 0.00 0.00 0.00 3.85
2474 2650 6.056236 GGGCTTATCTCGAAATTTTAGGTCT 58.944 40.000 0.00 0.00 0.00 3.85
2475 2651 6.203145 GGGCTTATCTCGAAATTTTAGGTCTC 59.797 42.308 0.00 0.00 0.00 3.36
2476 2652 6.203145 GGCTTATCTCGAAATTTTAGGTCTCC 59.797 42.308 0.00 0.00 0.00 3.71
2477 2653 6.987404 GCTTATCTCGAAATTTTAGGTCTCCT 59.013 38.462 0.00 0.00 37.71 3.69
2478 2654 7.496263 GCTTATCTCGAAATTTTAGGTCTCCTT 59.504 37.037 0.00 0.00 34.61 3.36
2479 2655 9.384764 CTTATCTCGAAATTTTAGGTCTCCTTT 57.615 33.333 0.00 0.00 34.61 3.11
2480 2656 7.617041 ATCTCGAAATTTTAGGTCTCCTTTG 57.383 36.000 0.00 0.00 34.61 2.77
2481 2657 5.938125 TCTCGAAATTTTAGGTCTCCTTTGG 59.062 40.000 0.00 0.00 34.61 3.28
2482 2658 5.627135 TCGAAATTTTAGGTCTCCTTTGGT 58.373 37.500 0.00 0.00 34.61 3.67
2483 2659 6.066032 TCGAAATTTTAGGTCTCCTTTGGTT 58.934 36.000 0.00 0.00 34.61 3.67
2484 2660 6.206048 TCGAAATTTTAGGTCTCCTTTGGTTC 59.794 38.462 0.00 0.00 34.61 3.62
2485 2661 6.016610 CGAAATTTTAGGTCTCCTTTGGTTCA 60.017 38.462 0.00 0.00 34.61 3.18
2486 2662 6.650427 AATTTTAGGTCTCCTTTGGTTCAC 57.350 37.500 0.00 0.00 34.61 3.18
2487 2663 4.781775 TTTAGGTCTCCTTTGGTTCACA 57.218 40.909 0.00 0.00 34.61 3.58
2488 2664 2.938956 AGGTCTCCTTTGGTTCACAG 57.061 50.000 0.00 0.00 0.00 3.66
2489 2665 1.421646 AGGTCTCCTTTGGTTCACAGG 59.578 52.381 0.00 0.00 33.03 4.00
2490 2666 1.420138 GGTCTCCTTTGGTTCACAGGA 59.580 52.381 3.22 3.22 37.91 3.86
2491 2667 2.040412 GGTCTCCTTTGGTTCACAGGAT 59.960 50.000 3.61 0.00 39.26 3.24
2492 2668 3.263425 GGTCTCCTTTGGTTCACAGGATA 59.737 47.826 3.61 0.00 39.26 2.59
2493 2669 4.508662 GTCTCCTTTGGTTCACAGGATAG 58.491 47.826 3.61 0.00 39.26 2.08
2494 2670 3.519510 TCTCCTTTGGTTCACAGGATAGG 59.480 47.826 3.61 0.00 39.26 2.57
2495 2671 2.576191 TCCTTTGGTTCACAGGATAGGG 59.424 50.000 0.00 0.00 35.68 3.53
2496 2672 2.576191 CCTTTGGTTCACAGGATAGGGA 59.424 50.000 0.00 0.00 33.52 4.20
2497 2673 3.203040 CCTTTGGTTCACAGGATAGGGAT 59.797 47.826 0.00 0.00 33.52 3.85
2498 2674 4.412199 CCTTTGGTTCACAGGATAGGGATA 59.588 45.833 0.00 0.00 33.52 2.59
2499 2675 5.073691 CCTTTGGTTCACAGGATAGGGATAT 59.926 44.000 0.00 0.00 33.52 1.63
2500 2676 6.410853 CCTTTGGTTCACAGGATAGGGATATT 60.411 42.308 0.00 0.00 33.52 1.28
2501 2677 7.202186 CCTTTGGTTCACAGGATAGGGATATTA 60.202 40.741 0.00 0.00 33.52 0.98
2502 2678 7.888514 TTGGTTCACAGGATAGGGATATTAT 57.111 36.000 0.00 0.00 0.00 1.28
2503 2679 8.982471 TTGGTTCACAGGATAGGGATATTATA 57.018 34.615 0.00 0.00 0.00 0.98
2504 2680 8.609617 TGGTTCACAGGATAGGGATATTATAG 57.390 38.462 0.00 0.00 0.00 1.31
2505 2681 7.623677 TGGTTCACAGGATAGGGATATTATAGG 59.376 40.741 0.00 0.00 0.00 2.57
2506 2682 7.844779 GGTTCACAGGATAGGGATATTATAGGA 59.155 40.741 0.00 0.00 0.00 2.94
2507 2683 9.268282 GTTCACAGGATAGGGATATTATAGGAA 57.732 37.037 0.00 0.00 0.00 3.36
2535 2711 9.730705 AGAAAAATCATAAGAAGTGAGATGACA 57.269 29.630 0.00 0.00 31.41 3.58
2538 2714 7.493743 AATCATAAGAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06
2539 2715 5.981174 TCATAAGAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
2540 2716 6.589135 TCATAAGAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
2555 2731 7.307131 TGACATGCATCTCAATTCCTATAGA 57.693 36.000 1.73 0.00 0.00 1.98
2556 2732 7.384477 TGACATGCATCTCAATTCCTATAGAG 58.616 38.462 1.73 0.00 0.00 2.43
2557 2733 7.234166 TGACATGCATCTCAATTCCTATAGAGA 59.766 37.037 1.73 0.00 40.96 3.10
2558 2734 7.971201 ACATGCATCTCAATTCCTATAGAGAA 58.029 34.615 0.00 3.84 40.19 2.87
2559 2735 8.095792 ACATGCATCTCAATTCCTATAGAGAAG 58.904 37.037 0.00 0.00 40.19 2.85
2560 2736 7.002250 TGCATCTCAATTCCTATAGAGAAGG 57.998 40.000 0.00 1.28 40.19 3.46
2561 2737 6.784473 TGCATCTCAATTCCTATAGAGAAGGA 59.216 38.462 0.00 5.06 40.19 3.36
2562 2738 7.039152 TGCATCTCAATTCCTATAGAGAAGGAG 60.039 40.741 17.80 17.80 43.90 3.69
2563 2739 7.178274 GCATCTCAATTCCTATAGAGAAGGAGA 59.822 40.741 22.66 22.66 43.90 3.71
2564 2740 9.258629 CATCTCAATTCCTATAGAGAAGGAGAT 57.741 37.037 23.86 23.86 43.90 2.75
2565 2741 8.648698 TCTCAATTCCTATAGAGAAGGAGATG 57.351 38.462 19.97 9.58 43.90 2.90
2566 2742 8.231007 TCTCAATTCCTATAGAGAAGGAGATGT 58.769 37.037 19.97 2.35 43.90 3.06
2567 2743 8.415950 TCAATTCCTATAGAGAAGGAGATGTC 57.584 38.462 0.00 0.00 43.90 3.06
2568 2744 8.007153 TCAATTCCTATAGAGAAGGAGATGTCA 58.993 37.037 0.00 0.00 43.90 3.58
2569 2745 8.814931 CAATTCCTATAGAGAAGGAGATGTCAT 58.185 37.037 0.00 0.00 43.90 3.06
2570 2746 8.971032 ATTCCTATAGAGAAGGAGATGTCATT 57.029 34.615 0.00 0.00 43.90 2.57
2571 2747 8.789767 TTCCTATAGAGAAGGAGATGTCATTT 57.210 34.615 0.00 0.00 43.90 2.32
2572 2748 8.187913 TCCTATAGAGAAGGAGATGTCATTTG 57.812 38.462 0.00 0.00 38.24 2.32
2573 2749 8.007153 TCCTATAGAGAAGGAGATGTCATTTGA 58.993 37.037 0.00 0.00 38.24 2.69
2574 2750 8.814931 CCTATAGAGAAGGAGATGTCATTTGAT 58.185 37.037 0.00 0.00 36.08 2.57
2575 2751 9.642327 CTATAGAGAAGGAGATGTCATTTGATG 57.358 37.037 0.00 0.00 0.00 3.07
2576 2752 5.124645 AGAGAAGGAGATGTCATTTGATGC 58.875 41.667 0.00 0.00 0.00 3.91
2577 2753 4.851843 AGAAGGAGATGTCATTTGATGCA 58.148 39.130 0.00 0.00 0.00 3.96
2578 2754 5.446860 AGAAGGAGATGTCATTTGATGCAT 58.553 37.500 0.00 0.00 32.43 3.96
2579 2755 6.598503 AGAAGGAGATGTCATTTGATGCATA 58.401 36.000 0.00 0.00 30.80 3.14
2580 2756 6.711194 AGAAGGAGATGTCATTTGATGCATAG 59.289 38.462 0.00 0.00 30.80 2.23
2581 2757 5.314529 AGGAGATGTCATTTGATGCATAGG 58.685 41.667 0.00 0.00 30.80 2.57
2582 2758 5.072736 AGGAGATGTCATTTGATGCATAGGA 59.927 40.000 0.00 0.00 30.80 2.94
2583 2759 5.944599 GGAGATGTCATTTGATGCATAGGAT 59.055 40.000 0.00 0.00 30.80 3.24
2584 2760 7.037802 AGGAGATGTCATTTGATGCATAGGATA 60.038 37.037 0.00 0.00 30.80 2.59
2585 2761 7.280428 GGAGATGTCATTTGATGCATAGGATAG 59.720 40.741 0.00 0.00 30.80 2.08
2586 2762 7.110810 AGATGTCATTTGATGCATAGGATAGG 58.889 38.462 0.00 0.00 30.80 2.57
2587 2763 6.438186 TGTCATTTGATGCATAGGATAGGA 57.562 37.500 0.00 0.00 0.00 2.94
2588 2764 6.840527 TGTCATTTGATGCATAGGATAGGAA 58.159 36.000 0.00 0.00 0.00 3.36
2589 2765 7.464273 TGTCATTTGATGCATAGGATAGGAAT 58.536 34.615 0.00 0.00 0.00 3.01
2590 2766 7.946219 TGTCATTTGATGCATAGGATAGGAATT 59.054 33.333 0.00 0.00 0.00 2.17
2591 2767 8.800332 GTCATTTGATGCATAGGATAGGAATTT 58.200 33.333 0.00 0.00 0.00 1.82
2592 2768 9.370930 TCATTTGATGCATAGGATAGGAATTTT 57.629 29.630 0.00 0.00 0.00 1.82
2593 2769 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
2643 2819 8.704849 TTTTCCTCTAAAATGTGAAGGATTGA 57.295 30.769 0.00 0.00 32.05 2.57
2644 2820 8.884124 TTTCCTCTAAAATGTGAAGGATTGAT 57.116 30.769 0.00 0.00 0.00 2.57
2645 2821 8.884124 TTCCTCTAAAATGTGAAGGATTGATT 57.116 30.769 0.00 0.00 0.00 2.57
2646 2822 8.511604 TCCTCTAAAATGTGAAGGATTGATTC 57.488 34.615 0.00 0.00 0.00 2.52
2647 2823 8.108999 TCCTCTAAAATGTGAAGGATTGATTCA 58.891 33.333 0.00 0.00 34.37 2.57
2648 2824 8.910944 CCTCTAAAATGTGAAGGATTGATTCAT 58.089 33.333 0.00 0.00 38.81 2.57
2690 2866 6.796785 AATCCATTCCTACAAATCAAAGGG 57.203 37.500 0.00 0.00 0.00 3.95
2691 2867 4.023291 TCCATTCCTACAAATCAAAGGGC 58.977 43.478 0.00 0.00 0.00 5.19
2692 2868 4.026052 CCATTCCTACAAATCAAAGGGCT 58.974 43.478 0.00 0.00 0.00 5.19
2693 2869 4.467438 CCATTCCTACAAATCAAAGGGCTT 59.533 41.667 0.00 0.00 0.00 4.35
2694 2870 5.046376 CCATTCCTACAAATCAAAGGGCTTT 60.046 40.000 0.00 0.00 0.00 3.51
2695 2871 6.154363 CCATTCCTACAAATCAAAGGGCTTTA 59.846 38.462 0.00 0.00 0.00 1.85
2696 2872 7.310361 CCATTCCTACAAATCAAAGGGCTTTAA 60.310 37.037 0.00 0.00 0.00 1.52
2697 2873 7.604657 TTCCTACAAATCAAAGGGCTTTAAA 57.395 32.000 0.00 0.00 0.00 1.52
2698 2874 7.227049 TCCTACAAATCAAAGGGCTTTAAAG 57.773 36.000 11.02 11.02 0.00 1.85
2699 2875 7.007723 TCCTACAAATCAAAGGGCTTTAAAGA 58.992 34.615 19.48 0.00 0.00 2.52
2700 2876 7.507616 TCCTACAAATCAAAGGGCTTTAAAGAA 59.492 33.333 19.48 0.00 0.00 2.52
2701 2877 8.147704 CCTACAAATCAAAGGGCTTTAAAGAAA 58.852 33.333 19.48 0.00 0.00 2.52
2702 2878 9.541143 CTACAAATCAAAGGGCTTTAAAGAAAA 57.459 29.630 19.48 0.00 0.00 2.29
2703 2879 8.978874 ACAAATCAAAGGGCTTTAAAGAAAAT 57.021 26.923 19.48 0.00 0.00 1.82
2704 2880 9.407380 ACAAATCAAAGGGCTTTAAAGAAAATT 57.593 25.926 19.48 5.33 0.00 1.82
2708 2884 8.445275 TCAAAGGGCTTTAAAGAAAATTTTCC 57.555 30.769 24.01 9.39 37.92 3.13
2709 2885 8.271458 TCAAAGGGCTTTAAAGAAAATTTTCCT 58.729 29.630 24.01 15.49 37.92 3.36
2710 2886 8.902806 CAAAGGGCTTTAAAGAAAATTTTCCTT 58.097 29.630 24.01 20.21 37.92 3.36
2711 2887 9.474313 AAAGGGCTTTAAAGAAAATTTTCCTTT 57.526 25.926 24.01 22.39 37.92 3.11
2712 2888 8.450578 AGGGCTTTAAAGAAAATTTTCCTTTG 57.549 30.769 24.01 13.38 37.92 2.77
2713 2889 7.013274 AGGGCTTTAAAGAAAATTTTCCTTTGC 59.987 33.333 24.01 19.81 37.92 3.68
2714 2890 7.201776 GGGCTTTAAAGAAAATTTTCCTTTGCA 60.202 33.333 24.01 13.01 37.92 4.08
2715 2891 8.187480 GGCTTTAAAGAAAATTTTCCTTTGCAA 58.813 29.630 24.01 17.40 37.92 4.08
2716 2892 9.566530 GCTTTAAAGAAAATTTTCCTTTGCAAA 57.433 25.926 24.01 12.14 37.92 3.68
2720 2896 8.523915 AAAGAAAATTTTCCTTTGCAAATCCT 57.476 26.923 24.01 1.58 37.92 3.24
2721 2897 9.625747 AAAGAAAATTTTCCTTTGCAAATCCTA 57.374 25.926 24.01 0.00 37.92 2.94
2722 2898 9.797642 AAGAAAATTTTCCTTTGCAAATCCTAT 57.202 25.926 24.01 0.62 37.92 2.57
2723 2899 9.440773 AGAAAATTTTCCTTTGCAAATCCTATC 57.559 29.630 24.01 3.34 37.92 2.08
2724 2900 8.565896 AAAATTTTCCTTTGCAAATCCTATCC 57.434 30.769 13.23 0.00 0.00 2.59
2725 2901 7.500629 AATTTTCCTTTGCAAATCCTATCCT 57.499 32.000 13.23 0.00 0.00 3.24
2726 2902 8.608185 AATTTTCCTTTGCAAATCCTATCCTA 57.392 30.769 13.23 0.00 0.00 2.94
2727 2903 8.788238 ATTTTCCTTTGCAAATCCTATCCTAT 57.212 30.769 13.23 0.00 0.00 2.57
2728 2904 9.881773 ATTTTCCTTTGCAAATCCTATCCTATA 57.118 29.630 13.23 0.00 0.00 1.31
2729 2905 8.924511 TTTCCTTTGCAAATCCTATCCTATAG 57.075 34.615 13.23 0.00 0.00 1.31
2730 2906 7.872061 TCCTTTGCAAATCCTATCCTATAGA 57.128 36.000 13.23 0.00 0.00 1.98
2731 2907 8.275187 TCCTTTGCAAATCCTATCCTATAGAA 57.725 34.615 13.23 0.00 0.00 2.10
2732 2908 8.723365 TCCTTTGCAAATCCTATCCTATAGAAA 58.277 33.333 13.23 0.00 0.00 2.52
2733 2909 9.525826 CCTTTGCAAATCCTATCCTATAGAAAT 57.474 33.333 13.23 0.00 0.00 2.17
2759 2935 8.748412 TCATATGAAATTCCTACAAACCAAAGG 58.252 33.333 1.98 0.00 0.00 3.11
2760 2936 8.748412 CATATGAAATTCCTACAAACCAAAGGA 58.252 33.333 0.00 0.00 37.64 3.36
2761 2937 6.648879 TGAAATTCCTACAAACCAAAGGAG 57.351 37.500 0.00 0.00 40.43 3.69
2762 2938 5.538433 TGAAATTCCTACAAACCAAAGGAGG 59.462 40.000 0.00 0.00 40.43 4.30
2763 2939 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
2764 2940 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
2765 2941 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.749044 ACGAGGACGAAGCGGCTA 60.749 61.111 1.35 0.00 42.66 3.93
51 52 4.117661 GACGAGGACGAAGCGGCT 62.118 66.667 0.00 0.00 42.66 5.52
149 150 2.363276 TAGTCGTCCCACGCCCAT 60.363 61.111 0.00 0.00 42.21 4.00
156 157 2.753043 GCGGAGGTAGTCGTCCCA 60.753 66.667 0.00 0.00 43.35 4.37
230 231 4.039357 CCGTGCTCGTCCTCGTGT 62.039 66.667 7.47 0.00 38.33 4.49
292 296 2.746277 GCGGCGGATTGGACAGTT 60.746 61.111 9.78 0.00 0.00 3.16
744 771 0.805614 CGACGAGCAGAAGAAGGAGA 59.194 55.000 0.00 0.00 0.00 3.71
991 1021 2.936498 CCATGACGTCCATAAACACCTC 59.064 50.000 14.12 0.00 33.31 3.85
992 1022 2.939640 GCCATGACGTCCATAAACACCT 60.940 50.000 14.12 0.00 33.31 4.00
999 1029 0.033366 CATCGGCCATGACGTCCATA 59.967 55.000 14.12 0.00 34.61 2.74
1063 1180 4.933064 GCCGTCGATGCCTCGGAG 62.933 72.222 14.86 0.00 46.05 4.63
1112 1229 0.890542 GTCCATGAACACCTGCTGCA 60.891 55.000 0.88 0.88 0.00 4.41
1193 1313 1.140589 CGCTGCTGGAAGATCTCGT 59.859 57.895 0.00 0.00 34.07 4.18
1242 1362 2.282958 TCGTCGGGGCAGAAGACT 60.283 61.111 0.00 0.00 33.10 3.24
1700 1823 3.443045 GTGCCAACCATGCTCCCG 61.443 66.667 0.00 0.00 0.00 5.14
1718 1841 2.169769 GGGTATGAGAAACCCGATCACA 59.830 50.000 0.00 0.00 46.95 3.58
1736 1859 4.431131 CGGCAGCAATCCTGGGGT 62.431 66.667 0.00 0.00 42.03 4.95
1745 1868 4.713735 TGAATCCCGCGGCAGCAA 62.714 61.111 22.85 1.00 45.49 3.91
1755 1882 3.882888 TGTTGTTCAGTTCAGTGAATCCC 59.117 43.478 9.18 0.00 38.68 3.85
1766 1893 5.622233 GCCTTCTTCTTGTTGTTGTTCAGTT 60.622 40.000 0.00 0.00 0.00 3.16
1844 1971 4.105057 ACTCCGGAGTAGATGTAAGAGGAT 59.895 45.833 35.59 4.65 40.43 3.24
1857 1984 3.074094 AGAGTGCCATATACTCCGGAGTA 59.926 47.826 39.15 39.15 46.68 2.59
1858 1985 2.158445 AGAGTGCCATATACTCCGGAGT 60.158 50.000 37.59 37.59 44.35 3.85
1859 1986 2.520069 AGAGTGCCATATACTCCGGAG 58.480 52.381 30.11 30.11 44.35 4.63
1860 1987 2.677542 AGAGTGCCATATACTCCGGA 57.322 50.000 2.93 2.93 44.35 5.14
1861 1988 6.716934 ATTATAGAGTGCCATATACTCCGG 57.283 41.667 0.00 0.00 44.35 5.14
1862 1989 9.684448 CATAATTATAGAGTGCCATATACTCCG 57.316 37.037 0.00 0.00 44.35 4.63
1863 1990 9.988815 CCATAATTATAGAGTGCCATATACTCC 57.011 37.037 0.00 0.00 44.35 3.85
1900 2027 1.061711 CTGCTGATCTAAACAGTGCGC 59.938 52.381 0.00 0.00 37.64 6.09
1901 2028 2.610433 TCTGCTGATCTAAACAGTGCG 58.390 47.619 0.00 0.00 37.64 5.34
1999 2133 1.256812 ATTAAGTTGTGGCACAGGGC 58.743 50.000 20.97 14.50 41.80 5.19
2000 2134 3.652274 CAAATTAAGTTGTGGCACAGGG 58.348 45.455 20.97 0.46 41.80 4.45
2012 2146 9.008965 TGTACAAGTGATGTATGCAAATTAAGT 57.991 29.630 0.00 0.00 45.87 2.24
2027 2161 8.028938 GCAACAGGAAAAATATGTACAAGTGAT 58.971 33.333 0.00 0.00 0.00 3.06
2028 2162 7.013750 TGCAACAGGAAAAATATGTACAAGTGA 59.986 33.333 0.00 0.00 0.00 3.41
2112 2246 6.699575 ATGGATTGAAGGGATTACTTTTCG 57.300 37.500 0.00 0.00 0.00 3.46
2153 2287 9.152595 GTAAGTACTCCCTCTGAATTTAAAGTG 57.847 37.037 0.00 0.00 0.00 3.16
2258 2434 3.440173 CCACCTACTTATGCCACAAAGTG 59.560 47.826 4.88 0.00 36.62 3.16
2302 2478 1.368345 TAGTCTTAGCCGCGCGTGTA 61.368 55.000 29.95 16.55 0.00 2.90
2318 2494 7.125811 ACATATGTTACTCTCATTGTGGGTAGT 59.874 37.037 1.41 0.00 0.00 2.73
2319 2495 7.500992 ACATATGTTACTCTCATTGTGGGTAG 58.499 38.462 1.41 0.00 0.00 3.18
2320 2496 7.432148 ACATATGTTACTCTCATTGTGGGTA 57.568 36.000 1.41 0.00 0.00 3.69
2321 2497 6.313519 ACATATGTTACTCTCATTGTGGGT 57.686 37.500 1.41 0.00 0.00 4.51
2322 2498 7.500992 ACTACATATGTTACTCTCATTGTGGG 58.499 38.462 14.77 0.00 0.00 4.61
2373 2549 9.491675 TTTCATTTATTGCTTGTCACATCATTT 57.508 25.926 0.00 0.00 0.00 2.32
2374 2550 9.491675 TTTTCATTTATTGCTTGTCACATCATT 57.508 25.926 0.00 0.00 0.00 2.57
2375 2551 9.491675 TTTTTCATTTATTGCTTGTCACATCAT 57.508 25.926 0.00 0.00 0.00 2.45
2376 2552 8.883954 TTTTTCATTTATTGCTTGTCACATCA 57.116 26.923 0.00 0.00 0.00 3.07
2398 2574 6.659242 AGCTATGTTACCACATGCTACTTTTT 59.341 34.615 9.24 0.00 43.92 1.94
2399 2575 6.180472 AGCTATGTTACCACATGCTACTTTT 58.820 36.000 9.24 0.00 43.92 2.27
2400 2576 5.745227 AGCTATGTTACCACATGCTACTTT 58.255 37.500 9.24 0.00 43.92 2.66
2401 2577 5.359194 AGCTATGTTACCACATGCTACTT 57.641 39.130 9.24 0.00 43.92 2.24
2402 2578 5.598830 ACTAGCTATGTTACCACATGCTACT 59.401 40.000 0.00 5.23 43.92 2.57
2403 2579 5.844004 ACTAGCTATGTTACCACATGCTAC 58.156 41.667 0.00 0.00 43.92 3.58
2404 2580 6.479972 AACTAGCTATGTTACCACATGCTA 57.520 37.500 13.80 13.80 43.92 3.49
2405 2581 5.359194 AACTAGCTATGTTACCACATGCT 57.641 39.130 13.25 13.25 43.92 3.79
2406 2582 6.281405 AGTAACTAGCTATGTTACCACATGC 58.719 40.000 25.92 11.98 46.31 4.06
2407 2583 6.924060 GGAGTAACTAGCTATGTTACCACATG 59.076 42.308 25.92 0.00 46.31 3.21
2408 2584 6.041751 GGGAGTAACTAGCTATGTTACCACAT 59.958 42.308 25.92 16.36 46.31 3.21
2409 2585 5.361857 GGGAGTAACTAGCTATGTTACCACA 59.638 44.000 25.92 6.86 46.31 4.17
2410 2586 5.597594 AGGGAGTAACTAGCTATGTTACCAC 59.402 44.000 25.92 21.37 46.31 4.16
2411 2587 5.774179 AGGGAGTAACTAGCTATGTTACCA 58.226 41.667 25.92 7.36 46.31 3.25
2412 2588 5.243507 GGAGGGAGTAACTAGCTATGTTACC 59.756 48.000 25.92 20.65 46.31 2.85
2413 2589 6.069994 AGGAGGGAGTAACTAGCTATGTTAC 58.930 44.000 24.10 24.10 45.81 2.50
2414 2590 6.277064 AGGAGGGAGTAACTAGCTATGTTA 57.723 41.667 10.09 10.09 0.00 2.41
2415 2591 5.145513 AGGAGGGAGTAACTAGCTATGTT 57.854 43.478 11.59 11.59 0.00 2.71
2416 2592 4.817874 AGGAGGGAGTAACTAGCTATGT 57.182 45.455 0.00 0.00 0.00 2.29
2417 2593 5.011227 GGAAAGGAGGGAGTAACTAGCTATG 59.989 48.000 0.00 0.00 0.00 2.23
2418 2594 5.149239 GGAAAGGAGGGAGTAACTAGCTAT 58.851 45.833 0.00 0.00 0.00 2.97
2419 2595 4.544683 GGAAAGGAGGGAGTAACTAGCTA 58.455 47.826 0.00 0.00 0.00 3.32
2420 2596 3.376636 GGAAAGGAGGGAGTAACTAGCT 58.623 50.000 0.00 0.00 0.00 3.32
2421 2597 2.101082 CGGAAAGGAGGGAGTAACTAGC 59.899 54.545 0.00 0.00 0.00 3.42
2422 2598 2.694109 CCGGAAAGGAGGGAGTAACTAG 59.306 54.545 0.00 0.00 45.00 2.57
2423 2599 2.043526 ACCGGAAAGGAGGGAGTAACTA 59.956 50.000 9.46 0.00 45.00 2.24
2424 2600 1.203275 ACCGGAAAGGAGGGAGTAACT 60.203 52.381 9.46 0.00 45.00 2.24
2425 2601 1.273759 ACCGGAAAGGAGGGAGTAAC 58.726 55.000 9.46 0.00 45.00 2.50
2426 2602 2.034436 AACCGGAAAGGAGGGAGTAA 57.966 50.000 9.46 0.00 45.00 2.24
2427 2603 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
2428 2604 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
2429 2605 3.071167 CCTATAAACCGGAAAGGAGGGAG 59.929 52.174 9.46 0.00 45.00 4.30
2430 2606 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
2431 2607 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
2432 2608 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
2433 2609 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
2434 2610 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
2436 2612 5.866207 AGATAAGCCCTATAAACCGGAAAG 58.134 41.667 9.46 0.00 0.00 2.62
2437 2613 5.510179 CGAGATAAGCCCTATAAACCGGAAA 60.510 44.000 9.46 0.00 0.00 3.13
2438 2614 4.021719 CGAGATAAGCCCTATAAACCGGAA 60.022 45.833 9.46 0.00 0.00 4.30
2439 2615 3.508793 CGAGATAAGCCCTATAAACCGGA 59.491 47.826 9.46 0.00 0.00 5.14
2440 2616 3.508793 TCGAGATAAGCCCTATAAACCGG 59.491 47.826 0.00 0.00 0.00 5.28
2441 2617 4.778534 TCGAGATAAGCCCTATAAACCG 57.221 45.455 0.00 0.00 0.00 4.44
2442 2618 7.981102 AATTTCGAGATAAGCCCTATAAACC 57.019 36.000 0.00 0.00 0.00 3.27
2445 2621 9.720769 CCTAAAATTTCGAGATAAGCCCTATAA 57.279 33.333 0.00 0.00 0.00 0.98
2446 2622 8.877195 ACCTAAAATTTCGAGATAAGCCCTATA 58.123 33.333 0.00 0.00 0.00 1.31
2447 2623 7.746703 ACCTAAAATTTCGAGATAAGCCCTAT 58.253 34.615 0.00 0.00 0.00 2.57
2448 2624 7.070821 AGACCTAAAATTTCGAGATAAGCCCTA 59.929 37.037 0.00 0.00 0.00 3.53
2449 2625 6.002653 ACCTAAAATTTCGAGATAAGCCCT 57.997 37.500 0.00 0.00 0.00 5.19
2450 2626 6.056236 AGACCTAAAATTTCGAGATAAGCCC 58.944 40.000 0.00 0.00 0.00 5.19
2451 2627 6.203145 GGAGACCTAAAATTTCGAGATAAGCC 59.797 42.308 0.00 0.00 0.00 4.35
2452 2628 6.987404 AGGAGACCTAAAATTTCGAGATAAGC 59.013 38.462 0.00 0.00 28.47 3.09
2453 2629 8.950208 AAGGAGACCTAAAATTTCGAGATAAG 57.050 34.615 0.00 0.00 31.13 1.73
2454 2630 9.162764 CAAAGGAGACCTAAAATTTCGAGATAA 57.837 33.333 0.00 0.00 31.13 1.75
2455 2631 7.769044 CCAAAGGAGACCTAAAATTTCGAGATA 59.231 37.037 0.00 0.00 31.13 1.98
2456 2632 6.599638 CCAAAGGAGACCTAAAATTTCGAGAT 59.400 38.462 0.00 0.00 31.13 2.75
2457 2633 5.938125 CCAAAGGAGACCTAAAATTTCGAGA 59.062 40.000 0.00 0.00 31.13 4.04
2458 2634 5.705905 ACCAAAGGAGACCTAAAATTTCGAG 59.294 40.000 0.00 0.00 31.13 4.04
2459 2635 5.627135 ACCAAAGGAGACCTAAAATTTCGA 58.373 37.500 0.00 0.00 31.13 3.71
2460 2636 5.959618 ACCAAAGGAGACCTAAAATTTCG 57.040 39.130 0.00 0.00 31.13 3.46
2461 2637 7.145985 GTGAACCAAAGGAGACCTAAAATTTC 58.854 38.462 0.00 0.00 31.13 2.17
2462 2638 6.609616 TGTGAACCAAAGGAGACCTAAAATTT 59.390 34.615 0.00 0.00 31.13 1.82
2463 2639 6.133356 TGTGAACCAAAGGAGACCTAAAATT 58.867 36.000 0.00 0.00 31.13 1.82
2464 2640 5.701224 TGTGAACCAAAGGAGACCTAAAAT 58.299 37.500 0.00 0.00 31.13 1.82
2465 2641 5.118729 TGTGAACCAAAGGAGACCTAAAA 57.881 39.130 0.00 0.00 31.13 1.52
2466 2642 4.445735 CCTGTGAACCAAAGGAGACCTAAA 60.446 45.833 0.00 0.00 41.22 1.85
2467 2643 3.072476 CCTGTGAACCAAAGGAGACCTAA 59.928 47.826 0.00 0.00 41.22 2.69
2468 2644 2.637872 CCTGTGAACCAAAGGAGACCTA 59.362 50.000 0.00 0.00 41.22 3.08
2469 2645 1.421646 CCTGTGAACCAAAGGAGACCT 59.578 52.381 0.00 0.00 41.22 3.85
2470 2646 1.420138 TCCTGTGAACCAAAGGAGACC 59.580 52.381 1.83 0.00 42.43 3.85
2471 2647 2.930826 TCCTGTGAACCAAAGGAGAC 57.069 50.000 1.83 0.00 42.43 3.36
2475 2651 2.576191 TCCCTATCCTGTGAACCAAAGG 59.424 50.000 0.00 0.00 40.12 3.11
2476 2652 4.510167 ATCCCTATCCTGTGAACCAAAG 57.490 45.455 0.00 0.00 0.00 2.77
2477 2653 6.590656 AATATCCCTATCCTGTGAACCAAA 57.409 37.500 0.00 0.00 0.00 3.28
2478 2654 7.888514 ATAATATCCCTATCCTGTGAACCAA 57.111 36.000 0.00 0.00 0.00 3.67
2479 2655 7.623677 CCTATAATATCCCTATCCTGTGAACCA 59.376 40.741 0.00 0.00 0.00 3.67
2480 2656 7.844779 TCCTATAATATCCCTATCCTGTGAACC 59.155 40.741 0.00 0.00 0.00 3.62
2481 2657 8.840200 TCCTATAATATCCCTATCCTGTGAAC 57.160 38.462 0.00 0.00 0.00 3.18
2509 2685 9.730705 TGTCATCTCACTTCTTATGATTTTTCT 57.269 29.630 0.00 0.00 31.49 2.52
2512 2688 8.404000 GCATGTCATCTCACTTCTTATGATTTT 58.596 33.333 0.00 0.00 31.49 1.82
2513 2689 7.555195 TGCATGTCATCTCACTTCTTATGATTT 59.445 33.333 0.00 0.00 31.49 2.17
2514 2690 7.052248 TGCATGTCATCTCACTTCTTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
2515 2691 6.589135 TGCATGTCATCTCACTTCTTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
2516 2692 5.981174 TGCATGTCATCTCACTTCTTATGA 58.019 37.500 0.00 0.00 0.00 2.15
2517 2693 6.862711 ATGCATGTCATCTCACTTCTTATG 57.137 37.500 0.00 0.00 0.00 1.90
2530 2706 7.914859 TCTATAGGAATTGAGATGCATGTCAT 58.085 34.615 25.41 13.07 38.32 3.06
2531 2707 7.234166 TCTCTATAGGAATTGAGATGCATGTCA 59.766 37.037 21.70 21.70 38.53 3.58
2532 2708 7.609960 TCTCTATAGGAATTGAGATGCATGTC 58.390 38.462 16.63 16.63 38.53 3.06
2533 2709 7.550597 TCTCTATAGGAATTGAGATGCATGT 57.449 36.000 2.46 0.00 38.53 3.21
2534 2710 7.549842 CCTTCTCTATAGGAATTGAGATGCATG 59.450 40.741 2.46 0.00 41.55 4.06
2535 2711 7.457218 TCCTTCTCTATAGGAATTGAGATGCAT 59.543 37.037 0.00 0.00 41.55 3.96
2536 2712 6.784473 TCCTTCTCTATAGGAATTGAGATGCA 59.216 38.462 0.00 0.00 41.55 3.96
2537 2713 7.178274 TCTCCTTCTCTATAGGAATTGAGATGC 59.822 40.741 17.69 0.00 41.55 3.91
2538 2714 8.648698 TCTCCTTCTCTATAGGAATTGAGATG 57.351 38.462 17.69 9.33 41.55 2.90
2539 2715 9.258629 CATCTCCTTCTCTATAGGAATTGAGAT 57.741 37.037 21.79 21.79 41.55 2.75
2540 2716 8.231007 ACATCTCCTTCTCTATAGGAATTGAGA 58.769 37.037 20.47 20.47 41.13 3.27
2541 2717 8.421249 ACATCTCCTTCTCTATAGGAATTGAG 57.579 38.462 0.00 10.50 41.13 3.02
2542 2718 8.007153 TGACATCTCCTTCTCTATAGGAATTGA 58.993 37.037 0.00 2.70 41.13 2.57
2543 2719 8.187913 TGACATCTCCTTCTCTATAGGAATTG 57.812 38.462 0.00 0.00 41.13 2.32
2544 2720 8.971032 ATGACATCTCCTTCTCTATAGGAATT 57.029 34.615 0.00 0.00 41.13 2.17
2545 2721 8.971032 AATGACATCTCCTTCTCTATAGGAAT 57.029 34.615 0.00 0.00 41.13 3.01
2546 2722 8.646004 CAAATGACATCTCCTTCTCTATAGGAA 58.354 37.037 0.00 2.11 41.13 3.36
2547 2723 8.007153 TCAAATGACATCTCCTTCTCTATAGGA 58.993 37.037 0.00 0.00 39.46 2.94
2548 2724 8.187913 TCAAATGACATCTCCTTCTCTATAGG 57.812 38.462 0.00 0.00 0.00 2.57
2549 2725 9.642327 CATCAAATGACATCTCCTTCTCTATAG 57.358 37.037 0.00 0.00 0.00 1.31
2550 2726 8.093307 GCATCAAATGACATCTCCTTCTCTATA 58.907 37.037 0.00 0.00 0.00 1.31
2551 2727 6.935771 GCATCAAATGACATCTCCTTCTCTAT 59.064 38.462 0.00 0.00 0.00 1.98
2552 2728 6.126968 TGCATCAAATGACATCTCCTTCTCTA 60.127 38.462 0.00 0.00 0.00 2.43
2553 2729 5.124645 GCATCAAATGACATCTCCTTCTCT 58.875 41.667 0.00 0.00 0.00 3.10
2554 2730 4.880120 TGCATCAAATGACATCTCCTTCTC 59.120 41.667 0.00 0.00 0.00 2.87
2555 2731 4.851843 TGCATCAAATGACATCTCCTTCT 58.148 39.130 0.00 0.00 0.00 2.85
2556 2732 5.769484 ATGCATCAAATGACATCTCCTTC 57.231 39.130 0.00 0.00 0.00 3.46
2557 2733 5.768662 CCTATGCATCAAATGACATCTCCTT 59.231 40.000 0.19 0.00 32.25 3.36
2558 2734 5.072736 TCCTATGCATCAAATGACATCTCCT 59.927 40.000 0.19 0.00 32.25 3.69
2559 2735 5.311265 TCCTATGCATCAAATGACATCTCC 58.689 41.667 0.19 0.00 32.25 3.71
2560 2736 7.280428 CCTATCCTATGCATCAAATGACATCTC 59.720 40.741 0.19 0.00 32.25 2.75
2561 2737 7.037802 TCCTATCCTATGCATCAAATGACATCT 60.038 37.037 0.19 0.00 32.25 2.90
2562 2738 7.108194 TCCTATCCTATGCATCAAATGACATC 58.892 38.462 0.19 0.00 32.25 3.06
2563 2739 7.024345 TCCTATCCTATGCATCAAATGACAT 57.976 36.000 0.19 0.00 33.67 3.06
2564 2740 6.438186 TCCTATCCTATGCATCAAATGACA 57.562 37.500 0.19 0.00 0.00 3.58
2565 2741 7.934855 ATTCCTATCCTATGCATCAAATGAC 57.065 36.000 0.19 0.00 0.00 3.06
2566 2742 8.945195 AAATTCCTATCCTATGCATCAAATGA 57.055 30.769 0.19 0.00 0.00 2.57
2567 2743 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
2617 2793 9.142014 TCAATCCTTCACATTTTAGAGGAAAAA 57.858 29.630 0.00 0.00 40.39 1.94
2618 2794 8.704849 TCAATCCTTCACATTTTAGAGGAAAA 57.295 30.769 0.00 0.00 41.24 2.29
2619 2795 8.884124 ATCAATCCTTCACATTTTAGAGGAAA 57.116 30.769 0.00 0.00 0.00 3.13
2620 2796 8.884124 AATCAATCCTTCACATTTTAGAGGAA 57.116 30.769 0.00 0.00 0.00 3.36
2621 2797 8.108999 TGAATCAATCCTTCACATTTTAGAGGA 58.891 33.333 0.00 0.00 0.00 3.71
2622 2798 8.284945 TGAATCAATCCTTCACATTTTAGAGG 57.715 34.615 0.00 0.00 0.00 3.69
2666 2842 6.683861 GCCCTTTGATTTGTAGGAATGGATTC 60.684 42.308 0.00 0.00 36.08 2.52
2667 2843 5.129320 GCCCTTTGATTTGTAGGAATGGATT 59.871 40.000 0.00 0.00 0.00 3.01
2668 2844 4.651045 GCCCTTTGATTTGTAGGAATGGAT 59.349 41.667 0.00 0.00 0.00 3.41
2669 2845 4.023291 GCCCTTTGATTTGTAGGAATGGA 58.977 43.478 0.00 0.00 0.00 3.41
2670 2846 4.026052 AGCCCTTTGATTTGTAGGAATGG 58.974 43.478 0.00 0.00 0.00 3.16
2671 2847 5.665916 AAGCCCTTTGATTTGTAGGAATG 57.334 39.130 0.00 0.00 0.00 2.67
2672 2848 7.790782 TTAAAGCCCTTTGATTTGTAGGAAT 57.209 32.000 3.62 0.00 34.23 3.01
2673 2849 7.507616 TCTTTAAAGCCCTTTGATTTGTAGGAA 59.492 33.333 10.51 0.00 34.23 3.36
2674 2850 7.007723 TCTTTAAAGCCCTTTGATTTGTAGGA 58.992 34.615 10.51 0.00 34.23 2.94
2675 2851 7.227049 TCTTTAAAGCCCTTTGATTTGTAGG 57.773 36.000 10.51 0.00 34.23 3.18
2676 2852 9.541143 TTTTCTTTAAAGCCCTTTGATTTGTAG 57.459 29.630 10.51 0.00 34.23 2.74
2678 2854 8.978874 ATTTTCTTTAAAGCCCTTTGATTTGT 57.021 26.923 10.51 0.00 34.23 2.83
2682 2858 9.066892 GGAAAATTTTCTTTAAAGCCCTTTGAT 57.933 29.630 25.86 0.00 37.35 2.57
2683 2859 8.271458 AGGAAAATTTTCTTTAAAGCCCTTTGA 58.729 29.630 25.86 0.00 37.35 2.69
2684 2860 8.450578 AGGAAAATTTTCTTTAAAGCCCTTTG 57.549 30.769 25.86 0.00 37.35 2.77
2685 2861 9.474313 AAAGGAAAATTTTCTTTAAAGCCCTTT 57.526 25.926 23.66 19.47 35.74 3.11
2686 2862 8.902806 CAAAGGAAAATTTTCTTTAAAGCCCTT 58.097 29.630 23.66 15.67 35.74 3.95
2687 2863 7.013274 GCAAAGGAAAATTTTCTTTAAAGCCCT 59.987 33.333 23.66 11.28 35.74 5.19
2688 2864 7.138736 GCAAAGGAAAATTTTCTTTAAAGCCC 58.861 34.615 23.66 9.41 35.74 5.19
2689 2865 7.702386 TGCAAAGGAAAATTTTCTTTAAAGCC 58.298 30.769 26.39 14.63 35.74 4.35
2690 2866 9.566530 TTTGCAAAGGAAAATTTTCTTTAAAGC 57.433 25.926 23.66 24.26 35.74 3.51
2694 2870 9.625747 AGGATTTGCAAAGGAAAATTTTCTTTA 57.374 25.926 23.66 11.70 35.74 1.85
2695 2871 8.523915 AGGATTTGCAAAGGAAAATTTTCTTT 57.476 26.923 25.86 22.64 37.99 2.52
2696 2872 9.797642 ATAGGATTTGCAAAGGAAAATTTTCTT 57.202 25.926 25.86 18.47 32.16 2.52
2697 2873 9.440773 GATAGGATTTGCAAAGGAAAATTTTCT 57.559 29.630 25.86 12.41 32.16 2.52
2698 2874 8.668353 GGATAGGATTTGCAAAGGAAAATTTTC 58.332 33.333 20.51 20.51 32.16 2.29
2699 2875 8.385491 AGGATAGGATTTGCAAAGGAAAATTTT 58.615 29.630 18.19 2.28 32.16 1.82
2700 2876 7.921304 AGGATAGGATTTGCAAAGGAAAATTT 58.079 30.769 18.19 0.00 32.16 1.82
2701 2877 7.500629 AGGATAGGATTTGCAAAGGAAAATT 57.499 32.000 18.19 0.00 32.16 1.82
2702 2878 8.788238 ATAGGATAGGATTTGCAAAGGAAAAT 57.212 30.769 18.19 7.20 34.84 1.82
2703 2879 9.354673 CTATAGGATAGGATTTGCAAAGGAAAA 57.645 33.333 18.19 2.48 0.00 2.29
2704 2880 8.723365 TCTATAGGATAGGATTTGCAAAGGAAA 58.277 33.333 18.19 3.91 0.00 3.13
2705 2881 8.275187 TCTATAGGATAGGATTTGCAAAGGAA 57.725 34.615 18.19 3.55 0.00 3.36
2706 2882 7.872061 TCTATAGGATAGGATTTGCAAAGGA 57.128 36.000 18.19 2.96 0.00 3.36
2707 2883 8.924511 TTTCTATAGGATAGGATTTGCAAAGG 57.075 34.615 18.19 0.00 0.00 3.11
2733 2909 8.748412 CCTTTGGTTTGTAGGAATTTCATATGA 58.252 33.333 0.00 0.00 0.00 2.15
2734 2910 8.748412 TCCTTTGGTTTGTAGGAATTTCATATG 58.252 33.333 0.00 0.00 35.20 1.78
2735 2911 8.893563 TCCTTTGGTTTGTAGGAATTTCATAT 57.106 30.769 0.00 0.00 35.20 1.78
2736 2912 7.396055 CCTCCTTTGGTTTGTAGGAATTTCATA 59.604 37.037 0.00 0.00 37.61 2.15
2737 2913 6.211384 CCTCCTTTGGTTTGTAGGAATTTCAT 59.789 38.462 0.00 0.00 37.61 2.57
2738 2914 5.538433 CCTCCTTTGGTTTGTAGGAATTTCA 59.462 40.000 0.00 0.00 37.61 2.69
2739 2915 5.566826 GCCTCCTTTGGTTTGTAGGAATTTC 60.567 44.000 0.00 0.00 37.61 2.17
2740 2916 4.283467 GCCTCCTTTGGTTTGTAGGAATTT 59.717 41.667 0.00 0.00 37.61 1.82
2741 2917 3.832490 GCCTCCTTTGGTTTGTAGGAATT 59.168 43.478 0.00 0.00 37.61 2.17
2742 2918 3.431415 GCCTCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 37.61 3.01
2743 2919 2.490168 GGCCTCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 37.61 3.36
2744 2920 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
2745 2921 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
2746 2922 2.586648 AGGCCTCCTTTGGTTTGTAG 57.413 50.000 0.00 0.00 0.00 2.74
2748 2924 3.946242 AAGGCCTCCTTTGGTTTGT 57.054 47.368 5.23 0.00 41.69 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.