Multiple sequence alignment - TraesCS2A01G165200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G165200 | chr2A | 100.000 | 7634 | 0 | 0 | 1 | 7634 | 117758169 | 117750536 | 0.000000e+00 | 14098.0 |
1 | TraesCS2A01G165200 | chr2A | 91.084 | 2445 | 183 | 26 | 1727 | 4158 | 94262458 | 94264880 | 0.000000e+00 | 3275.0 |
2 | TraesCS2A01G165200 | chr2A | 83.402 | 2663 | 335 | 83 | 1727 | 4346 | 268286114 | 268288712 | 0.000000e+00 | 2370.0 |
3 | TraesCS2A01G165200 | chr2A | 84.288 | 1763 | 210 | 51 | 2579 | 4311 | 669465316 | 669463591 | 0.000000e+00 | 1659.0 |
4 | TraesCS2A01G165200 | chr2A | 84.246 | 1352 | 163 | 38 | 3014 | 4346 | 268229647 | 268230967 | 0.000000e+00 | 1271.0 |
5 | TraesCS2A01G165200 | chr2A | 91.647 | 431 | 29 | 4 | 4646 | 5075 | 212580769 | 212580345 | 2.370000e-164 | 590.0 |
6 | TraesCS2A01G165200 | chr2A | 89.559 | 431 | 40 | 4 | 4646 | 5075 | 212573188 | 212572762 | 6.740000e-150 | 542.0 |
7 | TraesCS2A01G165200 | chr2A | 96.618 | 207 | 6 | 1 | 724 | 929 | 226553731 | 226553937 | 7.340000e-90 | 342.0 |
8 | TraesCS2A01G165200 | chr2A | 87.023 | 262 | 32 | 2 | 312 | 573 | 117758078 | 117758337 | 2.080000e-75 | 294.0 |
9 | TraesCS2A01G165200 | chr2A | 91.566 | 83 | 5 | 2 | 6 | 86 | 117757770 | 117757852 | 6.260000e-21 | 113.0 |
10 | TraesCS2A01G165200 | chr2A | 90.698 | 43 | 3 | 1 | 5076 | 5118 | 639216804 | 639216845 | 1.000000e-03 | 56.5 |
11 | TraesCS2A01G165200 | chr5A | 89.470 | 2944 | 231 | 48 | 1727 | 4642 | 204574163 | 204571271 | 0.000000e+00 | 3646.0 |
12 | TraesCS2A01G165200 | chr5A | 90.062 | 2435 | 194 | 37 | 1727 | 4137 | 109265191 | 109262781 | 0.000000e+00 | 3112.0 |
13 | TraesCS2A01G165200 | chr5A | 87.739 | 889 | 99 | 7 | 5128 | 6009 | 353166272 | 353167157 | 0.000000e+00 | 1029.0 |
14 | TraesCS2A01G165200 | chr5A | 95.637 | 573 | 24 | 1 | 1 | 573 | 77792317 | 77791746 | 0.000000e+00 | 918.0 |
15 | TraesCS2A01G165200 | chr5A | 85.513 | 780 | 96 | 14 | 5265 | 6031 | 122046193 | 122046968 | 0.000000e+00 | 798.0 |
16 | TraesCS2A01G165200 | chr5A | 91.324 | 438 | 31 | 4 | 4643 | 5075 | 376663353 | 376663788 | 6.600000e-165 | 592.0 |
17 | TraesCS2A01G165200 | chr5A | 88.931 | 262 | 26 | 2 | 312 | 573 | 77792227 | 77792485 | 3.440000e-83 | 320.0 |
18 | TraesCS2A01G165200 | chr5A | 89.333 | 225 | 20 | 3 | 4425 | 4649 | 100218597 | 100218377 | 5.830000e-71 | 279.0 |
19 | TraesCS2A01G165200 | chr5A | 89.035 | 228 | 21 | 3 | 4422 | 4649 | 169657171 | 169657394 | 5.830000e-71 | 279.0 |
20 | TraesCS2A01G165200 | chr5A | 94.286 | 35 | 2 | 0 | 225 | 259 | 525127127 | 525127093 | 4.000000e-03 | 54.7 |
21 | TraesCS2A01G165200 | chr1A | 88.377 | 2822 | 256 | 52 | 1727 | 4506 | 138769556 | 138772347 | 0.000000e+00 | 3328.0 |
22 | TraesCS2A01G165200 | chr1A | 91.327 | 2456 | 178 | 33 | 1728 | 4167 | 288549473 | 288551909 | 0.000000e+00 | 3323.0 |
23 | TraesCS2A01G165200 | chr1A | 88.045 | 2819 | 267 | 50 | 1729 | 4506 | 138761962 | 138764751 | 0.000000e+00 | 3275.0 |
24 | TraesCS2A01G165200 | chr1A | 89.652 | 2474 | 203 | 42 | 1732 | 4181 | 163508383 | 163505939 | 0.000000e+00 | 3101.0 |
25 | TraesCS2A01G165200 | chr1A | 84.694 | 2633 | 289 | 85 | 1726 | 4308 | 441164343 | 441166911 | 0.000000e+00 | 2525.0 |
26 | TraesCS2A01G165200 | chr1A | 86.118 | 778 | 94 | 13 | 5261 | 6029 | 278356899 | 278357671 | 0.000000e+00 | 826.0 |
27 | TraesCS2A01G165200 | chr1A | 90.783 | 434 | 35 | 4 | 4643 | 5075 | 144481763 | 144482192 | 6.640000e-160 | 575.0 |
28 | TraesCS2A01G165200 | chr1A | 96.635 | 208 | 7 | 0 | 724 | 931 | 12264551 | 12264344 | 5.670000e-91 | 346.0 |
29 | TraesCS2A01G165200 | chr1A | 96.635 | 208 | 5 | 2 | 724 | 929 | 530169983 | 530170190 | 2.040000e-90 | 344.0 |
30 | TraesCS2A01G165200 | chr1A | 91.870 | 246 | 19 | 1 | 4643 | 4888 | 224056506 | 224056750 | 7.340000e-90 | 342.0 |
31 | TraesCS2A01G165200 | chr1A | 93.750 | 224 | 13 | 1 | 4426 | 4649 | 223733109 | 223732887 | 1.230000e-87 | 335.0 |
32 | TraesCS2A01G165200 | chr1A | 89.778 | 225 | 19 | 3 | 4425 | 4649 | 551166881 | 551166661 | 1.250000e-72 | 285.0 |
33 | TraesCS2A01G165200 | chr1A | 88.444 | 225 | 22 | 3 | 4425 | 4649 | 329687616 | 329687396 | 1.260000e-67 | 268.0 |
34 | TraesCS2A01G165200 | chr3A | 89.731 | 2493 | 208 | 40 | 1727 | 4196 | 45211901 | 45214368 | 0.000000e+00 | 3142.0 |
35 | TraesCS2A01G165200 | chr3A | 89.480 | 2481 | 198 | 52 | 1729 | 4179 | 552957120 | 552954673 | 0.000000e+00 | 3077.0 |
36 | TraesCS2A01G165200 | chr3A | 92.553 | 470 | 29 | 6 | 4836 | 5300 | 235014921 | 235015389 | 0.000000e+00 | 669.0 |
37 | TraesCS2A01G165200 | chr3A | 91.863 | 467 | 33 | 5 | 4836 | 5300 | 235022744 | 235023207 | 0.000000e+00 | 647.0 |
38 | TraesCS2A01G165200 | chr3A | 77.700 | 574 | 99 | 18 | 6146 | 6704 | 713103611 | 713103052 | 2.660000e-84 | 324.0 |
39 | TraesCS2A01G165200 | chr3A | 90.222 | 225 | 18 | 3 | 4425 | 4649 | 713572122 | 713571902 | 2.690000e-74 | 291.0 |
40 | TraesCS2A01G165200 | chr3A | 86.939 | 245 | 30 | 2 | 997 | 1240 | 713104621 | 713104378 | 2.710000e-69 | 274.0 |
41 | TraesCS2A01G165200 | chr3A | 88.889 | 225 | 21 | 3 | 4425 | 4649 | 713586783 | 713586563 | 2.710000e-69 | 274.0 |
42 | TraesCS2A01G165200 | chr3A | 86.574 | 216 | 29 | 0 | 1336 | 1551 | 713104294 | 713104079 | 9.900000e-59 | 239.0 |
43 | TraesCS2A01G165200 | chr3A | 88.235 | 119 | 14 | 0 | 6030 | 6148 | 713103835 | 713103717 | 7.990000e-30 | 143.0 |
44 | TraesCS2A01G165200 | chr3A | 92.982 | 57 | 4 | 0 | 203 | 259 | 712321179 | 712321123 | 4.910000e-12 | 84.2 |
45 | TraesCS2A01G165200 | chr3A | 91.228 | 57 | 3 | 2 | 1438 | 1494 | 64855517 | 64855571 | 8.210000e-10 | 76.8 |
46 | TraesCS2A01G165200 | chr4A | 89.789 | 2468 | 212 | 31 | 1731 | 4179 | 200913128 | 200910682 | 0.000000e+00 | 3125.0 |
47 | TraesCS2A01G165200 | chr4A | 89.744 | 2457 | 199 | 40 | 1729 | 4156 | 129047821 | 129045389 | 0.000000e+00 | 3092.0 |
48 | TraesCS2A01G165200 | chr4A | 83.864 | 2609 | 311 | 80 | 1741 | 4296 | 302882531 | 302879980 | 0.000000e+00 | 2385.0 |
49 | TraesCS2A01G165200 | chr4A | 87.259 | 934 | 72 | 30 | 4602 | 5526 | 206955678 | 206954783 | 0.000000e+00 | 1022.0 |
50 | TraesCS2A01G165200 | chr4A | 92.920 | 678 | 39 | 8 | 4639 | 5315 | 206947731 | 206947062 | 0.000000e+00 | 977.0 |
51 | TraesCS2A01G165200 | chr4A | 86.473 | 791 | 94 | 10 | 5250 | 6029 | 532555355 | 532556143 | 0.000000e+00 | 856.0 |
52 | TraesCS2A01G165200 | chr4A | 86.146 | 794 | 97 | 11 | 5249 | 6031 | 532547625 | 532548416 | 0.000000e+00 | 845.0 |
53 | TraesCS2A01G165200 | chr4A | 78.389 | 745 | 128 | 22 | 6894 | 7634 | 97296320 | 97297035 | 3.250000e-123 | 453.0 |
54 | TraesCS2A01G165200 | chr7A | 90.074 | 2418 | 202 | 31 | 1737 | 4136 | 189854185 | 189851788 | 0.000000e+00 | 3101.0 |
55 | TraesCS2A01G165200 | chr7A | 85.879 | 956 | 120 | 13 | 5083 | 6029 | 511426523 | 511425574 | 0.000000e+00 | 1003.0 |
56 | TraesCS2A01G165200 | chr7A | 96.635 | 208 | 5 | 1 | 724 | 929 | 309580459 | 309580252 | 2.040000e-90 | 344.0 |
57 | TraesCS2A01G165200 | chr7A | 76.368 | 457 | 94 | 11 | 6905 | 7356 | 290280795 | 290281242 | 4.610000e-57 | 233.0 |
58 | TraesCS2A01G165200 | chr6A | 88.053 | 2620 | 238 | 54 | 1727 | 4296 | 182797946 | 182795352 | 0.000000e+00 | 3035.0 |
59 | TraesCS2A01G165200 | chr6A | 88.358 | 1443 | 140 | 25 | 4602 | 6031 | 556436279 | 556437706 | 0.000000e+00 | 1709.0 |
60 | TraesCS2A01G165200 | chr6A | 88.358 | 1443 | 140 | 25 | 4602 | 6031 | 556460081 | 556461508 | 0.000000e+00 | 1709.0 |
61 | TraesCS2A01G165200 | chr6A | 90.857 | 1214 | 84 | 18 | 4832 | 6029 | 335235733 | 335236935 | 0.000000e+00 | 1602.0 |
62 | TraesCS2A01G165200 | chr6A | 78.120 | 585 | 111 | 15 | 6761 | 7340 | 495680173 | 495679601 | 9.420000e-94 | 355.0 |
63 | TraesCS2A01G165200 | chr6A | 88.158 | 228 | 23 | 3 | 4422 | 4649 | 283025286 | 283025509 | 1.260000e-67 | 268.0 |
64 | TraesCS2A01G165200 | chr2B | 93.641 | 802 | 43 | 5 | 930 | 1728 | 166755994 | 166755198 | 0.000000e+00 | 1192.0 |
65 | TraesCS2A01G165200 | chr2B | 82.367 | 811 | 85 | 35 | 6286 | 7065 | 166749739 | 166748956 | 0.000000e+00 | 652.0 |
66 | TraesCS2A01G165200 | chr2B | 95.437 | 263 | 12 | 0 | 6030 | 6292 | 166755202 | 166754940 | 3.290000e-113 | 420.0 |
67 | TraesCS2A01G165200 | chr2B | 93.421 | 152 | 9 | 1 | 574 | 724 | 166756149 | 166755998 | 2.770000e-54 | 224.0 |
68 | TraesCS2A01G165200 | chr2D | 85.526 | 1064 | 84 | 41 | 6030 | 7065 | 116554723 | 116553702 | 0.000000e+00 | 1048.0 |
69 | TraesCS2A01G165200 | chr2D | 88.727 | 825 | 57 | 16 | 930 | 1728 | 116555533 | 116554719 | 0.000000e+00 | 976.0 |
70 | TraesCS2A01G165200 | chr2D | 94.156 | 154 | 5 | 2 | 574 | 724 | 116555686 | 116555534 | 1.660000e-56 | 231.0 |
71 | TraesCS2A01G165200 | chr4B | 91.925 | 483 | 36 | 1 | 93 | 575 | 18083614 | 18084093 | 0.000000e+00 | 673.0 |
72 | TraesCS2A01G165200 | chr4B | 91.221 | 262 | 22 | 1 | 316 | 577 | 18082445 | 18082185 | 9.420000e-94 | 355.0 |
73 | TraesCS2A01G165200 | chr4B | 97.585 | 207 | 4 | 1 | 724 | 929 | 373995910 | 373995704 | 3.390000e-93 | 353.0 |
74 | TraesCS2A01G165200 | chr4B | 94.253 | 87 | 1 | 4 | 6 | 89 | 18082362 | 18082447 | 6.220000e-26 | 130.0 |
75 | TraesCS2A01G165200 | chr4B | 88.764 | 89 | 8 | 2 | 6 | 92 | 18083918 | 18083830 | 2.910000e-19 | 108.0 |
76 | TraesCS2A01G165200 | chr3D | 90.984 | 488 | 35 | 4 | 93 | 573 | 369561 | 370046 | 0.000000e+00 | 649.0 |
77 | TraesCS2A01G165200 | chr3D | 77.938 | 485 | 81 | 19 | 6146 | 6613 | 577491603 | 577491128 | 5.830000e-71 | 279.0 |
78 | TraesCS2A01G165200 | chr3D | 93.711 | 159 | 10 | 0 | 1082 | 1240 | 577492555 | 577492397 | 9.900000e-59 | 239.0 |
79 | TraesCS2A01G165200 | chr3D | 87.317 | 205 | 26 | 0 | 1336 | 1540 | 577492287 | 577492083 | 1.280000e-57 | 235.0 |
80 | TraesCS2A01G165200 | chr3D | 81.699 | 153 | 20 | 5 | 1568 | 1713 | 577491977 | 577491826 | 3.740000e-23 | 121.0 |
81 | TraesCS2A01G165200 | chr3D | 91.011 | 89 | 5 | 3 | 6 | 92 | 369874 | 369787 | 4.840000e-22 | 117.0 |
82 | TraesCS2A01G165200 | chr6D | 77.535 | 917 | 171 | 21 | 6741 | 7634 | 333795700 | 333796604 | 3.160000e-143 | 520.0 |
83 | TraesCS2A01G165200 | chr6D | 79.412 | 442 | 77 | 10 | 7127 | 7564 | 29138103 | 29138534 | 4.480000e-77 | 300.0 |
84 | TraesCS2A01G165200 | chr7D | 75.305 | 903 | 170 | 39 | 6756 | 7632 | 232414948 | 232414073 | 4.320000e-102 | 383.0 |
85 | TraesCS2A01G165200 | chr7D | 75.205 | 730 | 157 | 21 | 6815 | 7531 | 192940364 | 192941082 | 2.660000e-84 | 324.0 |
86 | TraesCS2A01G165200 | chr7D | 78.530 | 517 | 93 | 15 | 7045 | 7552 | 546232159 | 546232666 | 2.660000e-84 | 324.0 |
87 | TraesCS2A01G165200 | chr3B | 79.710 | 552 | 81 | 20 | 6164 | 6701 | 770659713 | 770659179 | 3.360000e-98 | 370.0 |
88 | TraesCS2A01G165200 | chr7B | 96.618 | 207 | 7 | 0 | 724 | 930 | 435855826 | 435855620 | 2.040000e-90 | 344.0 |
89 | TraesCS2A01G165200 | chr7B | 96.618 | 207 | 6 | 1 | 724 | 930 | 529726137 | 529726342 | 7.340000e-90 | 342.0 |
90 | TraesCS2A01G165200 | chr5B | 96.635 | 208 | 5 | 2 | 724 | 929 | 440262940 | 440262733 | 2.040000e-90 | 344.0 |
91 | TraesCS2A01G165200 | chr1B | 97.059 | 204 | 6 | 0 | 724 | 927 | 18688738 | 18688941 | 2.040000e-90 | 344.0 |
92 | TraesCS2A01G165200 | chr4D | 75.857 | 671 | 132 | 22 | 6875 | 7529 | 72248286 | 72247630 | 1.600000e-81 | 315.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G165200 | chr2A | 117750536 | 117758169 | 7633 | True | 14098.000000 | 14098 | 100.000000 | 1 | 7634 | 1 | chr2A.!!$R1 | 7633 |
1 | TraesCS2A01G165200 | chr2A | 94262458 | 94264880 | 2422 | False | 3275.000000 | 3275 | 91.084000 | 1727 | 4158 | 1 | chr2A.!!$F1 | 2431 |
2 | TraesCS2A01G165200 | chr2A | 268286114 | 268288712 | 2598 | False | 2370.000000 | 2370 | 83.402000 | 1727 | 4346 | 1 | chr2A.!!$F4 | 2619 |
3 | TraesCS2A01G165200 | chr2A | 669463591 | 669465316 | 1725 | True | 1659.000000 | 1659 | 84.288000 | 2579 | 4311 | 1 | chr2A.!!$R4 | 1732 |
4 | TraesCS2A01G165200 | chr2A | 268229647 | 268230967 | 1320 | False | 1271.000000 | 1271 | 84.246000 | 3014 | 4346 | 1 | chr2A.!!$F3 | 1332 |
5 | TraesCS2A01G165200 | chr2A | 117757770 | 117758337 | 567 | False | 203.500000 | 294 | 89.294500 | 6 | 573 | 2 | chr2A.!!$F6 | 567 |
6 | TraesCS2A01G165200 | chr5A | 204571271 | 204574163 | 2892 | True | 3646.000000 | 3646 | 89.470000 | 1727 | 4642 | 1 | chr5A.!!$R4 | 2915 |
7 | TraesCS2A01G165200 | chr5A | 109262781 | 109265191 | 2410 | True | 3112.000000 | 3112 | 90.062000 | 1727 | 4137 | 1 | chr5A.!!$R3 | 2410 |
8 | TraesCS2A01G165200 | chr5A | 353166272 | 353167157 | 885 | False | 1029.000000 | 1029 | 87.739000 | 5128 | 6009 | 1 | chr5A.!!$F4 | 881 |
9 | TraesCS2A01G165200 | chr5A | 77791746 | 77792317 | 571 | True | 918.000000 | 918 | 95.637000 | 1 | 573 | 1 | chr5A.!!$R1 | 572 |
10 | TraesCS2A01G165200 | chr5A | 122046193 | 122046968 | 775 | False | 798.000000 | 798 | 85.513000 | 5265 | 6031 | 1 | chr5A.!!$F2 | 766 |
11 | TraesCS2A01G165200 | chr1A | 138769556 | 138772347 | 2791 | False | 3328.000000 | 3328 | 88.377000 | 1727 | 4506 | 1 | chr1A.!!$F2 | 2779 |
12 | TraesCS2A01G165200 | chr1A | 288549473 | 288551909 | 2436 | False | 3323.000000 | 3323 | 91.327000 | 1728 | 4167 | 1 | chr1A.!!$F6 | 2439 |
13 | TraesCS2A01G165200 | chr1A | 138761962 | 138764751 | 2789 | False | 3275.000000 | 3275 | 88.045000 | 1729 | 4506 | 1 | chr1A.!!$F1 | 2777 |
14 | TraesCS2A01G165200 | chr1A | 163505939 | 163508383 | 2444 | True | 3101.000000 | 3101 | 89.652000 | 1732 | 4181 | 1 | chr1A.!!$R2 | 2449 |
15 | TraesCS2A01G165200 | chr1A | 441164343 | 441166911 | 2568 | False | 2525.000000 | 2525 | 84.694000 | 1726 | 4308 | 1 | chr1A.!!$F7 | 2582 |
16 | TraesCS2A01G165200 | chr1A | 278356899 | 278357671 | 772 | False | 826.000000 | 826 | 86.118000 | 5261 | 6029 | 1 | chr1A.!!$F5 | 768 |
17 | TraesCS2A01G165200 | chr3A | 45211901 | 45214368 | 2467 | False | 3142.000000 | 3142 | 89.731000 | 1727 | 4196 | 1 | chr3A.!!$F1 | 2469 |
18 | TraesCS2A01G165200 | chr3A | 552954673 | 552957120 | 2447 | True | 3077.000000 | 3077 | 89.480000 | 1729 | 4179 | 1 | chr3A.!!$R1 | 2450 |
19 | TraesCS2A01G165200 | chr3A | 713103052 | 713104621 | 1569 | True | 245.000000 | 324 | 84.862000 | 997 | 6704 | 4 | chr3A.!!$R5 | 5707 |
20 | TraesCS2A01G165200 | chr4A | 200910682 | 200913128 | 2446 | True | 3125.000000 | 3125 | 89.789000 | 1731 | 4179 | 1 | chr4A.!!$R2 | 2448 |
21 | TraesCS2A01G165200 | chr4A | 129045389 | 129047821 | 2432 | True | 3092.000000 | 3092 | 89.744000 | 1729 | 4156 | 1 | chr4A.!!$R1 | 2427 |
22 | TraesCS2A01G165200 | chr4A | 302879980 | 302882531 | 2551 | True | 2385.000000 | 2385 | 83.864000 | 1741 | 4296 | 1 | chr4A.!!$R5 | 2555 |
23 | TraesCS2A01G165200 | chr4A | 206954783 | 206955678 | 895 | True | 1022.000000 | 1022 | 87.259000 | 4602 | 5526 | 1 | chr4A.!!$R4 | 924 |
24 | TraesCS2A01G165200 | chr4A | 206947062 | 206947731 | 669 | True | 977.000000 | 977 | 92.920000 | 4639 | 5315 | 1 | chr4A.!!$R3 | 676 |
25 | TraesCS2A01G165200 | chr4A | 532555355 | 532556143 | 788 | False | 856.000000 | 856 | 86.473000 | 5250 | 6029 | 1 | chr4A.!!$F3 | 779 |
26 | TraesCS2A01G165200 | chr4A | 532547625 | 532548416 | 791 | False | 845.000000 | 845 | 86.146000 | 5249 | 6031 | 1 | chr4A.!!$F2 | 782 |
27 | TraesCS2A01G165200 | chr4A | 97296320 | 97297035 | 715 | False | 453.000000 | 453 | 78.389000 | 6894 | 7634 | 1 | chr4A.!!$F1 | 740 |
28 | TraesCS2A01G165200 | chr7A | 189851788 | 189854185 | 2397 | True | 3101.000000 | 3101 | 90.074000 | 1737 | 4136 | 1 | chr7A.!!$R1 | 2399 |
29 | TraesCS2A01G165200 | chr7A | 511425574 | 511426523 | 949 | True | 1003.000000 | 1003 | 85.879000 | 5083 | 6029 | 1 | chr7A.!!$R3 | 946 |
30 | TraesCS2A01G165200 | chr6A | 182795352 | 182797946 | 2594 | True | 3035.000000 | 3035 | 88.053000 | 1727 | 4296 | 1 | chr6A.!!$R1 | 2569 |
31 | TraesCS2A01G165200 | chr6A | 556436279 | 556437706 | 1427 | False | 1709.000000 | 1709 | 88.358000 | 4602 | 6031 | 1 | chr6A.!!$F3 | 1429 |
32 | TraesCS2A01G165200 | chr6A | 556460081 | 556461508 | 1427 | False | 1709.000000 | 1709 | 88.358000 | 4602 | 6031 | 1 | chr6A.!!$F4 | 1429 |
33 | TraesCS2A01G165200 | chr6A | 335235733 | 335236935 | 1202 | False | 1602.000000 | 1602 | 90.857000 | 4832 | 6029 | 1 | chr6A.!!$F2 | 1197 |
34 | TraesCS2A01G165200 | chr6A | 495679601 | 495680173 | 572 | True | 355.000000 | 355 | 78.120000 | 6761 | 7340 | 1 | chr6A.!!$R2 | 579 |
35 | TraesCS2A01G165200 | chr2B | 166748956 | 166749739 | 783 | True | 652.000000 | 652 | 82.367000 | 6286 | 7065 | 1 | chr2B.!!$R1 | 779 |
36 | TraesCS2A01G165200 | chr2B | 166754940 | 166756149 | 1209 | True | 612.000000 | 1192 | 94.166333 | 574 | 6292 | 3 | chr2B.!!$R2 | 5718 |
37 | TraesCS2A01G165200 | chr2D | 116553702 | 116555686 | 1984 | True | 751.666667 | 1048 | 89.469667 | 574 | 7065 | 3 | chr2D.!!$R1 | 6491 |
38 | TraesCS2A01G165200 | chr4B | 18082362 | 18084093 | 1731 | False | 401.500000 | 673 | 93.089000 | 6 | 575 | 2 | chr4B.!!$F1 | 569 |
39 | TraesCS2A01G165200 | chr4B | 18082185 | 18083918 | 1733 | True | 231.500000 | 355 | 89.992500 | 6 | 577 | 2 | chr4B.!!$R2 | 571 |
40 | TraesCS2A01G165200 | chr3D | 577491128 | 577492555 | 1427 | True | 218.500000 | 279 | 85.166250 | 1082 | 6613 | 4 | chr3D.!!$R2 | 5531 |
41 | TraesCS2A01G165200 | chr6D | 333795700 | 333796604 | 904 | False | 520.000000 | 520 | 77.535000 | 6741 | 7634 | 1 | chr6D.!!$F2 | 893 |
42 | TraesCS2A01G165200 | chr7D | 232414073 | 232414948 | 875 | True | 383.000000 | 383 | 75.305000 | 6756 | 7632 | 1 | chr7D.!!$R1 | 876 |
43 | TraesCS2A01G165200 | chr7D | 192940364 | 192941082 | 718 | False | 324.000000 | 324 | 75.205000 | 6815 | 7531 | 1 | chr7D.!!$F1 | 716 |
44 | TraesCS2A01G165200 | chr7D | 546232159 | 546232666 | 507 | False | 324.000000 | 324 | 78.530000 | 7045 | 7552 | 1 | chr7D.!!$F2 | 507 |
45 | TraesCS2A01G165200 | chr3B | 770659179 | 770659713 | 534 | True | 370.000000 | 370 | 79.710000 | 6164 | 6701 | 1 | chr3B.!!$R1 | 537 |
46 | TraesCS2A01G165200 | chr4D | 72247630 | 72248286 | 656 | True | 315.000000 | 315 | 75.857000 | 6875 | 7529 | 1 | chr4D.!!$R1 | 654 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
889 | 2815 | 0.036388 | TTCATCAAGGCGGGTCTCAC | 60.036 | 55.0 | 0.0 | 0.0 | 0.00 | 3.51 | F |
950 | 2876 | 0.391661 | GCTGACACATCCATCCACGT | 60.392 | 55.0 | 0.0 | 0.0 | 0.00 | 4.49 | F |
2093 | 4164 | 0.459899 | TGCGTCACCTGCTCGATAAT | 59.540 | 50.0 | 0.0 | 0.0 | 0.00 | 1.28 | F |
2155 | 4227 | 0.467384 | CGGGGACTCAGCAATCTCAT | 59.533 | 55.0 | 0.0 | 0.0 | 0.00 | 2.90 | F |
3376 | 5541 | 0.986527 | TTGCCTGAGATCCTGCAAGA | 59.013 | 50.0 | 5.1 | 0.0 | 38.68 | 3.02 | F |
4937 | 7162 | 0.037326 | CTACTCCTGCGGCTTGAACA | 60.037 | 55.0 | 0.0 | 0.0 | 0.00 | 3.18 | F |
5658 | 7898 | 0.313043 | TTCGGAGAGCGAAAACGTCT | 59.687 | 50.0 | 0.0 | 0.0 | 38.43 | 4.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2368 | 4450 | 0.460284 | CGTGATGGTCTCTTTCCGGG | 60.460 | 60.000 | 0.00 | 0.0 | 0.00 | 5.73 | R |
2767 | 4857 | 0.959553 | GAGTGTTGGTCCGACTGAGA | 59.040 | 55.000 | 10.75 | 0.0 | 0.00 | 3.27 | R |
3190 | 5352 | 2.737783 | CGTTGTTTGGCTATGTTACCGA | 59.262 | 45.455 | 0.00 | 0.0 | 0.00 | 4.69 | R |
4109 | 6319 | 2.623416 | CAGAAAGGTCCCCAAACTTCAC | 59.377 | 50.000 | 0.00 | 0.0 | 0.00 | 3.18 | R |
4953 | 7178 | 0.108585 | CCCTCTCTCTCTCTCTCCCG | 59.891 | 65.000 | 0.00 | 0.0 | 0.00 | 5.14 | R |
6015 | 8263 | 0.033781 | CAGGGTTGTAACGTCCCGAA | 59.966 | 55.000 | 3.76 | 0.0 | 45.27 | 4.30 | R |
6739 | 9162 | 0.309612 | ACGTTCAAACCATGCGTTCC | 59.690 | 50.000 | 0.83 | 0.0 | 31.78 | 3.62 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 1.493854 | AAACCCGCACCCCACATCTA | 61.494 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
58 | 59 | 1.279025 | ACCCGCACCCCACATCTATT | 61.279 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
86 | 89 | 0.251474 | TTCCAGCTGCAGCCAAATCT | 60.251 | 50.000 | 34.39 | 12.93 | 43.38 | 2.40 |
107 | 1539 | 3.267483 | TCTAGTAATGAACTTTGGGCGC | 58.733 | 45.455 | 0.00 | 0.00 | 39.80 | 6.53 |
123 | 1639 | 2.805546 | GCCGTCTCTATCGTGCCA | 59.194 | 61.111 | 0.00 | 0.00 | 0.00 | 4.92 |
380 | 2301 | 4.937015 | GGTGCGGGTTTATTACTGTTAAGA | 59.063 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
537 | 2459 | 2.325082 | GGGCTGAAACATCACGCGT | 61.325 | 57.895 | 5.58 | 5.58 | 0.00 | 6.01 |
548 | 2470 | 1.526887 | CATCACGCGTCTGACAAGTTT | 59.473 | 47.619 | 9.86 | 0.00 | 0.00 | 2.66 |
549 | 2471 | 1.647346 | TCACGCGTCTGACAAGTTTT | 58.353 | 45.000 | 9.86 | 0.00 | 0.00 | 2.43 |
623 | 2548 | 2.167398 | TTACGAGGTGAGGTGCCAGC | 62.167 | 60.000 | 0.00 | 0.00 | 34.97 | 4.85 |
725 | 2651 | 3.751479 | CAGATATTGGATCGTGGGTGA | 57.249 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
727 | 2653 | 3.321968 | CAGATATTGGATCGTGGGTGAGA | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
728 | 2654 | 3.322254 | AGATATTGGATCGTGGGTGAGAC | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
729 | 2655 | 0.541863 | ATTGGATCGTGGGTGAGACC | 59.458 | 55.000 | 0.00 | 0.00 | 37.60 | 3.85 |
730 | 2656 | 0.834261 | TTGGATCGTGGGTGAGACCA | 60.834 | 55.000 | 0.00 | 0.00 | 41.02 | 4.02 |
731 | 2657 | 1.257750 | TGGATCGTGGGTGAGACCAG | 61.258 | 60.000 | 0.00 | 0.00 | 42.20 | 4.00 |
733 | 2659 | 1.229209 | ATCGTGGGTGAGACCAGGT | 60.229 | 57.895 | 0.00 | 0.00 | 44.55 | 4.00 |
735 | 2661 | 1.908793 | CGTGGGTGAGACCAGGTCT | 60.909 | 63.158 | 23.18 | 23.18 | 46.42 | 3.85 |
743 | 2669 | 3.383162 | AGACCAGGTCTCACGGATT | 57.617 | 52.632 | 17.31 | 0.00 | 38.71 | 3.01 |
744 | 2670 | 2.526888 | AGACCAGGTCTCACGGATTA | 57.473 | 50.000 | 17.31 | 0.00 | 38.71 | 1.75 |
745 | 2671 | 2.379972 | AGACCAGGTCTCACGGATTAG | 58.620 | 52.381 | 17.31 | 0.00 | 38.71 | 1.73 |
746 | 2672 | 0.824759 | ACCAGGTCTCACGGATTAGC | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
747 | 2673 | 0.824109 | CCAGGTCTCACGGATTAGCA | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
748 | 2674 | 1.202463 | CCAGGTCTCACGGATTAGCAG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.24 |
749 | 2675 | 1.115467 | AGGTCTCACGGATTAGCAGG | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
750 | 2676 | 0.824759 | GGTCTCACGGATTAGCAGGT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
751 | 2677 | 1.471676 | GGTCTCACGGATTAGCAGGTG | 60.472 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
752 | 2678 | 1.476891 | GTCTCACGGATTAGCAGGTGA | 59.523 | 52.381 | 0.00 | 0.00 | 37.77 | 4.02 |
754 | 2680 | 1.847328 | TCACGGATTAGCAGGTGAGA | 58.153 | 50.000 | 0.00 | 0.00 | 34.71 | 3.27 |
755 | 2681 | 1.476891 | TCACGGATTAGCAGGTGAGAC | 59.523 | 52.381 | 0.00 | 0.00 | 34.71 | 3.36 |
756 | 2682 | 0.824759 | ACGGATTAGCAGGTGAGACC | 59.175 | 55.000 | 0.00 | 0.00 | 38.99 | 3.85 |
757 | 2683 | 0.105039 | CGGATTAGCAGGTGAGACCC | 59.895 | 60.000 | 0.00 | 0.00 | 39.75 | 4.46 |
758 | 2684 | 1.204146 | GGATTAGCAGGTGAGACCCA | 58.796 | 55.000 | 0.00 | 0.00 | 39.75 | 4.51 |
759 | 2685 | 1.771255 | GGATTAGCAGGTGAGACCCAT | 59.229 | 52.381 | 0.00 | 0.00 | 39.75 | 4.00 |
760 | 2686 | 2.224402 | GGATTAGCAGGTGAGACCCATC | 60.224 | 54.545 | 0.00 | 0.00 | 39.75 | 3.51 |
761 | 2687 | 1.204146 | TTAGCAGGTGAGACCCATCC | 58.796 | 55.000 | 0.00 | 0.00 | 39.75 | 3.51 |
762 | 2688 | 0.339859 | TAGCAGGTGAGACCCATCCT | 59.660 | 55.000 | 0.00 | 0.00 | 39.75 | 3.24 |
763 | 2689 | 1.222936 | GCAGGTGAGACCCATCCTG | 59.777 | 63.158 | 5.79 | 5.79 | 39.75 | 3.86 |
764 | 2690 | 1.267574 | GCAGGTGAGACCCATCCTGA | 61.268 | 60.000 | 13.26 | 0.00 | 42.00 | 3.86 |
765 | 2691 | 1.504912 | CAGGTGAGACCCATCCTGAT | 58.495 | 55.000 | 4.28 | 0.00 | 42.00 | 2.90 |
766 | 2692 | 1.140452 | CAGGTGAGACCCATCCTGATG | 59.860 | 57.143 | 4.28 | 0.00 | 42.00 | 3.07 |
778 | 2704 | 0.536724 | TCCTGATGGATGACACGTGG | 59.463 | 55.000 | 21.57 | 1.66 | 37.46 | 4.94 |
779 | 2705 | 1.091771 | CCTGATGGATGACACGTGGC | 61.092 | 60.000 | 21.57 | 19.24 | 34.57 | 5.01 |
780 | 2706 | 0.391528 | CTGATGGATGACACGTGGCA | 60.392 | 55.000 | 29.28 | 29.28 | 37.54 | 4.92 |
796 | 2722 | 3.663995 | TGGCATCCACAAATCACAAAG | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 2.77 |
797 | 2723 | 2.288948 | TGGCATCCACAAATCACAAAGC | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
798 | 2724 | 2.288948 | GGCATCCACAAATCACAAAGCA | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
799 | 2725 | 3.592059 | GCATCCACAAATCACAAAGCAT | 58.408 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
800 | 2726 | 3.615496 | GCATCCACAAATCACAAAGCATC | 59.385 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
801 | 2727 | 3.940209 | TCCACAAATCACAAAGCATCC | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
802 | 2728 | 3.229293 | TCCACAAATCACAAAGCATCCA | 58.771 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
803 | 2729 | 3.005684 | TCCACAAATCACAAAGCATCCAC | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
804 | 2730 | 3.319755 | CACAAATCACAAAGCATCCACC | 58.680 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
805 | 2731 | 2.299867 | ACAAATCACAAAGCATCCACCC | 59.700 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
806 | 2732 | 1.560505 | AATCACAAAGCATCCACCCC | 58.439 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
807 | 2733 | 0.409092 | ATCACAAAGCATCCACCCCA | 59.591 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
808 | 2734 | 0.539438 | TCACAAAGCATCCACCCCAC | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
809 | 2735 | 1.228862 | ACAAAGCATCCACCCCACC | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
810 | 2736 | 1.984026 | CAAAGCATCCACCCCACCC | 60.984 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
811 | 2737 | 3.238197 | AAAGCATCCACCCCACCCC | 62.238 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
814 | 2740 | 4.060667 | CATCCACCCCACCCCCAC | 62.061 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
819 | 2745 | 4.542627 | ACCCCACCCCCACCTGAA | 62.543 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
820 | 2746 | 3.189646 | CCCCACCCCCACCTGAAA | 61.190 | 66.667 | 0.00 | 0.00 | 0.00 | 2.69 |
821 | 2747 | 2.557181 | CCCCACCCCCACCTGAAAT | 61.557 | 63.158 | 0.00 | 0.00 | 0.00 | 2.17 |
822 | 2748 | 1.000359 | CCCACCCCCACCTGAAATC | 60.000 | 63.158 | 0.00 | 0.00 | 0.00 | 2.17 |
823 | 2749 | 1.773635 | CCACCCCCACCTGAAATCA | 59.226 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
824 | 2750 | 0.323725 | CCACCCCCACCTGAAATCAG | 60.324 | 60.000 | 3.37 | 3.37 | 43.40 | 2.90 |
825 | 2751 | 0.698238 | CACCCCCACCTGAAATCAGA | 59.302 | 55.000 | 11.94 | 0.00 | 46.59 | 3.27 |
826 | 2752 | 0.995024 | ACCCCCACCTGAAATCAGAG | 59.005 | 55.000 | 11.94 | 4.94 | 46.59 | 3.35 |
827 | 2753 | 0.257039 | CCCCCACCTGAAATCAGAGG | 59.743 | 60.000 | 11.94 | 12.14 | 46.59 | 3.69 |
828 | 2754 | 3.890527 | CCCACCTGAAATCAGAGGG | 57.109 | 57.895 | 19.64 | 19.64 | 46.59 | 4.30 |
829 | 2755 | 0.257039 | CCCACCTGAAATCAGAGGGG | 59.743 | 60.000 | 22.88 | 20.85 | 46.36 | 4.79 |
830 | 2756 | 1.289160 | CCACCTGAAATCAGAGGGGA | 58.711 | 55.000 | 11.94 | 0.00 | 46.59 | 4.81 |
831 | 2757 | 1.211457 | CCACCTGAAATCAGAGGGGAG | 59.789 | 57.143 | 11.94 | 0.00 | 46.59 | 4.30 |
832 | 2758 | 2.191400 | CACCTGAAATCAGAGGGGAGA | 58.809 | 52.381 | 11.94 | 0.00 | 46.59 | 3.71 |
833 | 2759 | 2.170187 | CACCTGAAATCAGAGGGGAGAG | 59.830 | 54.545 | 11.94 | 0.00 | 46.59 | 3.20 |
834 | 2760 | 2.045047 | ACCTGAAATCAGAGGGGAGAGA | 59.955 | 50.000 | 11.94 | 0.00 | 46.59 | 3.10 |
835 | 2761 | 3.311252 | ACCTGAAATCAGAGGGGAGAGAT | 60.311 | 47.826 | 11.94 | 0.00 | 46.59 | 2.75 |
836 | 2762 | 3.715834 | CCTGAAATCAGAGGGGAGAGATT | 59.284 | 47.826 | 11.94 | 0.00 | 46.59 | 2.40 |
837 | 2763 | 4.904251 | CCTGAAATCAGAGGGGAGAGATTA | 59.096 | 45.833 | 11.94 | 0.00 | 46.59 | 1.75 |
838 | 2764 | 5.011943 | CCTGAAATCAGAGGGGAGAGATTAG | 59.988 | 48.000 | 11.94 | 0.00 | 46.59 | 1.73 |
839 | 2765 | 5.781827 | TGAAATCAGAGGGGAGAGATTAGA | 58.218 | 41.667 | 0.00 | 0.00 | 31.01 | 2.10 |
840 | 2766 | 6.388814 | TGAAATCAGAGGGGAGAGATTAGAT | 58.611 | 40.000 | 0.00 | 0.00 | 31.01 | 1.98 |
841 | 2767 | 6.269538 | TGAAATCAGAGGGGAGAGATTAGATG | 59.730 | 42.308 | 0.00 | 0.00 | 31.01 | 2.90 |
842 | 2768 | 3.505386 | TCAGAGGGGAGAGATTAGATGC | 58.495 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
843 | 2769 | 3.141838 | TCAGAGGGGAGAGATTAGATGCT | 59.858 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
844 | 2770 | 3.903090 | CAGAGGGGAGAGATTAGATGCTT | 59.097 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
845 | 2771 | 4.347583 | CAGAGGGGAGAGATTAGATGCTTT | 59.652 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
846 | 2772 | 4.347583 | AGAGGGGAGAGATTAGATGCTTTG | 59.652 | 45.833 | 0.00 | 0.00 | 0.00 | 2.77 |
847 | 2773 | 4.043596 | AGGGGAGAGATTAGATGCTTTGT | 58.956 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
848 | 2774 | 4.133078 | GGGGAGAGATTAGATGCTTTGTG | 58.867 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
849 | 2775 | 4.141620 | GGGGAGAGATTAGATGCTTTGTGA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
850 | 2776 | 5.455899 | GGGGAGAGATTAGATGCTTTGTGAT | 60.456 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
851 | 2777 | 6.060788 | GGGAGAGATTAGATGCTTTGTGATT | 58.939 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
852 | 2778 | 6.545298 | GGGAGAGATTAGATGCTTTGTGATTT | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
853 | 2779 | 7.416022 | GGAGAGATTAGATGCTTTGTGATTTG | 58.584 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
854 | 2780 | 7.066766 | GGAGAGATTAGATGCTTTGTGATTTGT | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
855 | 2781 | 7.759465 | AGAGATTAGATGCTTTGTGATTTGTG | 58.241 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
856 | 2782 | 7.609146 | AGAGATTAGATGCTTTGTGATTTGTGA | 59.391 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
857 | 2783 | 8.114331 | AGATTAGATGCTTTGTGATTTGTGAA | 57.886 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
858 | 2784 | 8.746530 | AGATTAGATGCTTTGTGATTTGTGAAT | 58.253 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
859 | 2785 | 8.697846 | ATTAGATGCTTTGTGATTTGTGAATG | 57.302 | 30.769 | 0.00 | 0.00 | 0.00 | 2.67 |
860 | 2786 | 4.927425 | AGATGCTTTGTGATTTGTGAATGC | 59.073 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
861 | 2787 | 3.391965 | TGCTTTGTGATTTGTGAATGCC | 58.608 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
862 | 2788 | 3.181468 | TGCTTTGTGATTTGTGAATGCCA | 60.181 | 39.130 | 0.00 | 0.00 | 0.00 | 4.92 |
863 | 2789 | 3.184986 | GCTTTGTGATTTGTGAATGCCAC | 59.815 | 43.478 | 0.00 | 0.00 | 45.88 | 5.01 |
876 | 2802 | 4.642445 | GAATGCCACATGTCATTCATCA | 57.358 | 40.909 | 24.71 | 6.53 | 44.71 | 3.07 |
877 | 2803 | 5.001237 | GAATGCCACATGTCATTCATCAA | 57.999 | 39.130 | 24.71 | 0.00 | 44.71 | 2.57 |
878 | 2804 | 4.649088 | ATGCCACATGTCATTCATCAAG | 57.351 | 40.909 | 0.00 | 0.00 | 34.09 | 3.02 |
879 | 2805 | 2.756207 | TGCCACATGTCATTCATCAAGG | 59.244 | 45.455 | 0.00 | 0.00 | 34.09 | 3.61 |
880 | 2806 | 2.480759 | GCCACATGTCATTCATCAAGGC | 60.481 | 50.000 | 0.00 | 0.00 | 37.49 | 4.35 |
881 | 2807 | 2.223409 | CCACATGTCATTCATCAAGGCG | 60.223 | 50.000 | 0.00 | 0.00 | 34.09 | 5.52 |
882 | 2808 | 2.019249 | ACATGTCATTCATCAAGGCGG | 58.981 | 47.619 | 0.00 | 0.00 | 34.09 | 6.13 |
883 | 2809 | 1.335810 | CATGTCATTCATCAAGGCGGG | 59.664 | 52.381 | 0.00 | 0.00 | 34.09 | 6.13 |
884 | 2810 | 0.327924 | TGTCATTCATCAAGGCGGGT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
885 | 2811 | 1.017387 | GTCATTCATCAAGGCGGGTC | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
886 | 2812 | 0.911769 | TCATTCATCAAGGCGGGTCT | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
887 | 2813 | 1.134401 | TCATTCATCAAGGCGGGTCTC | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
888 | 2814 | 0.911769 | ATTCATCAAGGCGGGTCTCA | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
889 | 2815 | 0.036388 | TTCATCAAGGCGGGTCTCAC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
890 | 2816 | 1.450312 | CATCAAGGCGGGTCTCACC | 60.450 | 63.158 | 0.00 | 0.00 | 37.60 | 4.02 |
891 | 2817 | 1.613630 | ATCAAGGCGGGTCTCACCT | 60.614 | 57.895 | 0.00 | 0.00 | 38.64 | 4.00 |
904 | 2830 | 6.672266 | GGGTCTCACCTGATTTATATGAGA | 57.328 | 41.667 | 0.00 | 0.00 | 42.63 | 3.27 |
908 | 2834 | 7.295322 | TCTCACCTGATTTATATGAGACCTG | 57.705 | 40.000 | 0.00 | 0.00 | 40.59 | 4.00 |
909 | 2835 | 6.268617 | TCTCACCTGATTTATATGAGACCTGG | 59.731 | 42.308 | 0.00 | 0.00 | 40.59 | 4.45 |
910 | 2836 | 5.905331 | TCACCTGATTTATATGAGACCTGGT | 59.095 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
911 | 2837 | 6.042093 | TCACCTGATTTATATGAGACCTGGTC | 59.958 | 42.308 | 19.20 | 19.20 | 0.00 | 4.02 |
912 | 2838 | 6.042552 | CACCTGATTTATATGAGACCTGGTCT | 59.957 | 42.308 | 28.70 | 28.70 | 46.42 | 3.85 |
950 | 2876 | 0.391661 | GCTGACACATCCATCCACGT | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
964 | 2893 | 0.951040 | CCACGTTTGACTCCAGAGCC | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
975 | 2904 | 1.745489 | CCAGAGCCTTAACCGCCAC | 60.745 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
976 | 2905 | 2.100631 | CAGAGCCTTAACCGCCACG | 61.101 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
977 | 2906 | 2.047560 | GAGCCTTAACCGCCACGT | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 4.49 |
1063 | 2992 | 4.363990 | CCGTCGTGCTGGCTCTGT | 62.364 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1245 | 3174 | 0.953960 | CCAAGAACCCAGGTGCGTAC | 60.954 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1281 | 3215 | 2.705410 | CCTCATCCCCTCCCCTGA | 59.295 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1302 | 3236 | 1.734047 | GCAAGCGGATCCGAGCTATAG | 60.734 | 57.143 | 37.64 | 18.28 | 43.78 | 1.31 |
1331 | 3298 | 3.712016 | TTCCTCCAAATCACCGAATCA | 57.288 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
1344 | 3311 | 1.001624 | CGAATCATGCGCAGACTTCA | 58.998 | 50.000 | 18.32 | 0.00 | 0.00 | 3.02 |
1481 | 3448 | 1.444724 | CGGCAACCACGACGACATA | 60.445 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
1582 | 3627 | 3.970410 | CCCAGGGTGCAGCTTCCA | 61.970 | 66.667 | 16.65 | 0.00 | 0.00 | 3.53 |
1649 | 3700 | 4.459089 | GGGCTGTCACGCTCCTCC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1735 | 3786 | 3.900446 | CGAAGGACCCTTGTAACGT | 57.100 | 52.632 | 5.96 | 0.00 | 36.26 | 3.99 |
1788 | 3839 | 4.760530 | AGCATGACTTAGAGGCATAACA | 57.239 | 40.909 | 0.00 | 0.00 | 43.49 | 2.41 |
1799 | 3850 | 4.592942 | AGAGGCATAACAGCATTGAAAGA | 58.407 | 39.130 | 0.00 | 0.00 | 35.83 | 2.52 |
1811 | 3862 | 3.181537 | GCATTGAAAGAAATGTCGCAAGC | 60.182 | 43.478 | 0.00 | 0.00 | 39.33 | 4.01 |
1843 | 3894 | 5.650266 | TCTTCGCAAACAACCCATGTAATAT | 59.350 | 36.000 | 0.00 | 0.00 | 42.99 | 1.28 |
1986 | 4050 | 2.798148 | AATGCGACAAGGTCCCCGAC | 62.798 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2089 | 4160 | 2.355837 | GTTGCGTCACCTGCTCGA | 60.356 | 61.111 | 0.00 | 0.00 | 0.00 | 4.04 |
2093 | 4164 | 0.459899 | TGCGTCACCTGCTCGATAAT | 59.540 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2155 | 4227 | 0.467384 | CGGGGACTCAGCAATCTCAT | 59.533 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2289 | 4367 | 2.171489 | GAAGGCAAAGCACGGTCGAC | 62.171 | 60.000 | 7.13 | 7.13 | 0.00 | 4.20 |
2303 | 4384 | 4.031765 | CACGGTCGACAAAAGTATGATCAG | 59.968 | 45.833 | 18.91 | 0.00 | 0.00 | 2.90 |
2368 | 4450 | 1.295746 | GTTCACTTCCCGGACTCCC | 59.704 | 63.158 | 0.73 | 0.00 | 0.00 | 4.30 |
3065 | 5196 | 6.062095 | CCTTCCACCCTTTACCAAGTATATG | 58.938 | 44.000 | 0.00 | 0.00 | 0.00 | 1.78 |
3190 | 5352 | 3.497584 | GCTATAAGAGGGGCTGAGCAAAT | 60.498 | 47.826 | 6.82 | 0.00 | 31.41 | 2.32 |
3216 | 5378 | 5.048852 | GGTAACATAGCCAAACAACGGTTTA | 60.049 | 40.000 | 0.00 | 0.00 | 45.18 | 2.01 |
3217 | 5379 | 5.715434 | AACATAGCCAAACAACGGTTTAT | 57.285 | 34.783 | 0.00 | 0.00 | 45.18 | 1.40 |
3336 | 5501 | 6.313905 | GCAACTAGCAAGCAAAGATAGAAGTA | 59.686 | 38.462 | 2.97 | 0.00 | 44.79 | 2.24 |
3370 | 5535 | 1.767681 | GGTCATCTTGCCTGAGATCCT | 59.232 | 52.381 | 0.00 | 0.00 | 34.20 | 3.24 |
3376 | 5541 | 0.986527 | TTGCCTGAGATCCTGCAAGA | 59.013 | 50.000 | 5.10 | 0.00 | 38.68 | 3.02 |
3390 | 5555 | 3.561725 | CCTGCAAGAAAGAAGAACGAGTT | 59.438 | 43.478 | 0.00 | 0.00 | 34.07 | 3.01 |
3622 | 5811 | 1.262683 | GAGCTCAATATGCAACTCCGC | 59.737 | 52.381 | 9.40 | 0.00 | 0.00 | 5.54 |
3771 | 5968 | 1.813513 | ATGAGGCCAGAACGACAAAG | 58.186 | 50.000 | 5.01 | 0.00 | 0.00 | 2.77 |
3800 | 6000 | 2.086869 | CGGAAACTCCTCATGTGCAAT | 58.913 | 47.619 | 0.00 | 0.00 | 33.30 | 3.56 |
3935 | 6139 | 6.095432 | TGTTACAAGCCTAGTTACGGTTAA | 57.905 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
4100 | 6310 | 7.700505 | ACATATGATGCACTGTTAATGAGTTG | 58.299 | 34.615 | 10.38 | 0.00 | 0.00 | 3.16 |
4109 | 6319 | 6.628856 | GCACTGTTAATGAGTTGTTATATGCG | 59.371 | 38.462 | 0.00 | 0.00 | 0.00 | 4.73 |
4159 | 6373 | 8.713737 | AACGGTAAAACTCTGGATAAATAGAC | 57.286 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
4161 | 6375 | 7.980099 | ACGGTAAAACTCTGGATAAATAGACAG | 59.020 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
4168 | 6382 | 5.080337 | TCTGGATAAATAGACAGATCGCCT | 58.920 | 41.667 | 0.00 | 0.00 | 35.24 | 5.52 |
4170 | 6384 | 4.832823 | TGGATAAATAGACAGATCGCCTGA | 59.167 | 41.667 | 10.86 | 0.00 | 45.78 | 3.86 |
4171 | 6385 | 5.481824 | TGGATAAATAGACAGATCGCCTGAT | 59.518 | 40.000 | 10.86 | 3.14 | 45.78 | 2.90 |
4196 | 6416 | 1.318576 | AACAGAAGTTGGGCCGAAAG | 58.681 | 50.000 | 0.01 | 0.00 | 36.39 | 2.62 |
4621 | 6844 | 4.477975 | CGAGGTGGCGACGAGGAC | 62.478 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
4627 | 6850 | 3.443045 | GGCGACGAGGACGGGTTA | 61.443 | 66.667 | 0.00 | 0.00 | 44.46 | 2.85 |
4628 | 6851 | 2.202531 | GCGACGAGGACGGGTTAC | 60.203 | 66.667 | 0.00 | 0.00 | 44.46 | 2.50 |
4734 | 6958 | 3.317571 | AGAGGCAAGGCGCTCACT | 61.318 | 61.111 | 7.64 | 0.00 | 41.91 | 3.41 |
4751 | 6975 | 2.155279 | CACTGAGAAGAGACAGGACGA | 58.845 | 52.381 | 0.00 | 0.00 | 38.30 | 4.20 |
4757 | 6981 | 1.469308 | GAAGAGACAGGACGACGACAT | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
4800 | 7024 | 1.070786 | GAACACAGGGCCTCGTGAA | 59.929 | 57.895 | 30.16 | 0.00 | 36.91 | 3.18 |
4937 | 7162 | 0.037326 | CTACTCCTGCGGCTTGAACA | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4948 | 7173 | 1.133790 | GGCTTGAACATCTGCACATCC | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4952 | 7177 | 4.796946 | GCTTGAACATCTGCACATCCAAAA | 60.797 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
4953 | 7178 | 4.241590 | TGAACATCTGCACATCCAAAAC | 57.758 | 40.909 | 0.00 | 0.00 | 0.00 | 2.43 |
5052 | 7278 | 4.457496 | GCTCCGGTGCTGCTGCTA | 62.457 | 66.667 | 20.97 | 0.47 | 40.48 | 3.49 |
5081 | 7307 | 0.741221 | GGAGATGACTCGGTGGTTGC | 60.741 | 60.000 | 0.00 | 0.00 | 43.44 | 4.17 |
5189 | 7415 | 4.115199 | GGTTGGCTCGGGGCTCAT | 62.115 | 66.667 | 11.37 | 0.00 | 41.46 | 2.90 |
5312 | 7539 | 4.805744 | GGACATCTCCCTAGAAGTTAGGA | 58.194 | 47.826 | 1.83 | 0.00 | 33.92 | 2.94 |
5341 | 7569 | 5.644206 | GTCCAGATTTAGACAAGGGAGTTTC | 59.356 | 44.000 | 0.00 | 0.00 | 33.08 | 2.78 |
5439 | 7670 | 8.572855 | AGAATAGGAAGTCCAAATGAGAAAAG | 57.427 | 34.615 | 0.00 | 0.00 | 38.89 | 2.27 |
5473 | 7704 | 1.142870 | GGATGTTTGGGGATGATCCGA | 59.857 | 52.381 | 5.22 | 0.00 | 37.43 | 4.55 |
5475 | 7706 | 3.490348 | GATGTTTGGGGATGATCCGAAT | 58.510 | 45.455 | 5.22 | 0.00 | 37.43 | 3.34 |
5604 | 7842 | 1.066645 | TGTGTAGACGGTCTCGAGCTA | 60.067 | 52.381 | 15.05 | 0.00 | 40.11 | 3.32 |
5624 | 7864 | 4.953579 | GCTAAGAGAAGAGAAGAGAGGGAA | 59.046 | 45.833 | 0.00 | 0.00 | 0.00 | 3.97 |
5647 | 7887 | 3.773974 | GCGACTGCTTTCGGAGAG | 58.226 | 61.111 | 9.18 | 0.00 | 39.50 | 3.20 |
5658 | 7898 | 0.313043 | TTCGGAGAGCGAAAACGTCT | 59.687 | 50.000 | 0.00 | 0.00 | 38.43 | 4.18 |
5682 | 7924 | 3.386726 | ACGTTAGACCAGCTATATTGCCA | 59.613 | 43.478 | 5.48 | 0.00 | 0.00 | 4.92 |
5788 | 8030 | 2.029110 | CACGCCAACTTTCATCCCATTT | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
5790 | 8032 | 2.230992 | CGCCAACTTTCATCCCATTTCA | 59.769 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
5804 | 8046 | 4.830046 | TCCCATTTCAAGAACATTTTCCGA | 59.170 | 37.500 | 0.00 | 0.00 | 31.28 | 4.55 |
5811 | 8053 | 4.274950 | TCAAGAACATTTTCCGACCACTTC | 59.725 | 41.667 | 0.00 | 0.00 | 31.28 | 3.01 |
5838 | 8081 | 2.581208 | ATATTTGGACGTGCCGCGGA | 62.581 | 55.000 | 33.48 | 11.82 | 46.52 | 5.54 |
5859 | 8102 | 2.118404 | CGTGCAAGTGTGGTTGGGT | 61.118 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
5868 | 8111 | 0.542333 | TGTGGTTGGGTTCAGAACGA | 59.458 | 50.000 | 7.22 | 0.00 | 0.00 | 3.85 |
5886 | 8129 | 1.069432 | CGAACAACGGAGAGAACTCGA | 60.069 | 52.381 | 0.00 | 0.00 | 43.44 | 4.04 |
5943 | 8190 | 4.580995 | TGATGCAATGCACATGATGACATA | 59.419 | 37.500 | 11.23 | 0.00 | 43.04 | 2.29 |
5984 | 8231 | 4.281688 | AGCAAATGACAAGGCAACAATAGT | 59.718 | 37.500 | 0.00 | 0.00 | 41.41 | 2.12 |
5994 | 8242 | 8.630054 | ACAAGGCAACAATAGTGAATAACTAA | 57.370 | 30.769 | 0.00 | 0.00 | 41.88 | 2.24 |
6015 | 8263 | 0.889186 | GGACACTTGGCACATCGGTT | 60.889 | 55.000 | 0.00 | 0.00 | 39.30 | 4.44 |
6021 | 8269 | 2.046700 | GGCACATCGGTTTCGGGA | 60.047 | 61.111 | 0.00 | 0.00 | 36.95 | 5.14 |
6144 | 8392 | 0.613777 | GGTTCCTCAATCCAGACGGT | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
6206 | 8568 | 0.320374 | TACGTCAAGGTGGCTCCAAG | 59.680 | 55.000 | 8.51 | 0.00 | 39.02 | 3.61 |
6303 | 8665 | 1.371337 | GCATGATGGACGCTCTTGCA | 61.371 | 55.000 | 0.00 | 0.00 | 41.15 | 4.08 |
6305 | 8667 | 1.086067 | ATGATGGACGCTCTTGCACG | 61.086 | 55.000 | 0.00 | 0.00 | 39.64 | 5.34 |
6326 | 8688 | 3.455327 | GGCGATCTTCAGTTAAGGTACC | 58.545 | 50.000 | 2.73 | 2.73 | 35.75 | 3.34 |
6328 | 8690 | 4.113354 | GCGATCTTCAGTTAAGGTACCAG | 58.887 | 47.826 | 15.94 | 0.00 | 35.75 | 4.00 |
6329 | 8691 | 4.381718 | GCGATCTTCAGTTAAGGTACCAGT | 60.382 | 45.833 | 15.94 | 3.79 | 35.75 | 4.00 |
6356 | 8727 | 7.223777 | GCTACTGTATCTGAATTCTGAAACTCC | 59.776 | 40.741 | 17.62 | 6.24 | 0.00 | 3.85 |
6393 | 8803 | 6.237675 | CGTCTGATTGATGTGTGTATCTTGTC | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
6525 | 8935 | 2.216148 | CCAAGAGGGCGAGAGGATT | 58.784 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
6531 | 8941 | 1.139853 | GAGGGCGAGAGGATTGTTGAT | 59.860 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
6543 | 8953 | 9.388506 | GAGAGGATTGTTGATATCTCTGAAAAA | 57.611 | 33.333 | 3.98 | 0.00 | 32.16 | 1.94 |
6716 | 9139 | 7.255139 | GCAAACAGTTTACAGATTTAGTCAGGT | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
6717 | 9140 | 9.268268 | CAAACAGTTTACAGATTTAGTCAGGTA | 57.732 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
6719 | 9142 | 9.654663 | AACAGTTTACAGATTTAGTCAGGTATC | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
6720 | 9143 | 9.036980 | ACAGTTTACAGATTTAGTCAGGTATCT | 57.963 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
6721 | 9144 | 9.877178 | CAGTTTACAGATTTAGTCAGGTATCTT | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
6727 | 9150 | 9.965902 | ACAGATTTAGTCAGGTATCTTCAAATT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
6730 | 9153 | 6.903883 | TTAGTCAGGTATCTTCAAATTCGC | 57.096 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
6731 | 9154 | 4.832248 | AGTCAGGTATCTTCAAATTCGCA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
6732 | 9155 | 5.245531 | AGTCAGGTATCTTCAAATTCGCAA | 58.754 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
6735 | 9158 | 6.312918 | GTCAGGTATCTTCAAATTCGCAACTA | 59.687 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
6736 | 9159 | 7.011482 | GTCAGGTATCTTCAAATTCGCAACTAT | 59.989 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
6737 | 9160 | 7.224753 | TCAGGTATCTTCAAATTCGCAACTATC | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
6738 | 9161 | 6.483640 | AGGTATCTTCAAATTCGCAACTATCC | 59.516 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
6739 | 9162 | 4.857871 | TCTTCAAATTCGCAACTATCCG | 57.142 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
6742 | 9181 | 3.601435 | TCAAATTCGCAACTATCCGGAA | 58.399 | 40.909 | 9.01 | 0.00 | 0.00 | 4.30 |
6774 | 9215 | 6.567687 | TTGAACGTGTTTATCATCCAACAT | 57.432 | 33.333 | 0.00 | 0.00 | 35.40 | 2.71 |
6807 | 9250 | 2.841389 | CGACGACCGGTTCAAACG | 59.159 | 61.111 | 9.42 | 10.23 | 33.91 | 3.60 |
6812 | 9255 | 2.961669 | GACCGGTTCAAACGCGCAT | 61.962 | 57.895 | 9.42 | 0.00 | 0.00 | 4.73 |
6813 | 9256 | 2.202298 | CCGGTTCAAACGCGCATC | 60.202 | 61.111 | 5.73 | 0.00 | 0.00 | 3.91 |
6833 | 9291 | 2.962421 | TCTTTTCCCGCAAATTGGAAGT | 59.038 | 40.909 | 0.00 | 0.00 | 41.44 | 3.01 |
6938 | 9407 | 3.829601 | AGTCTCATTCTCTTTCACTCCGT | 59.170 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
6977 | 9446 | 0.747283 | GCATCTGCACCCTTCTCCTG | 60.747 | 60.000 | 0.00 | 0.00 | 41.59 | 3.86 |
6979 | 9448 | 0.913451 | ATCTGCACCCTTCTCCTGCT | 60.913 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
7002 | 9474 | 1.676014 | GCTGCCATTGTACCTCTTCGT | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
7011 | 9483 | 2.776370 | TACCTCTTCGTCCGCCACCT | 62.776 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
7065 | 9539 | 2.386660 | GCTCGCTCACCTTGTGCTC | 61.387 | 63.158 | 0.00 | 0.00 | 34.97 | 4.26 |
7108 | 9583 | 2.814469 | CGTCCATAGCTAGCTACCTCCA | 60.814 | 54.545 | 26.41 | 5.78 | 0.00 | 3.86 |
7109 | 9586 | 3.231818 | GTCCATAGCTAGCTACCTCCAA | 58.768 | 50.000 | 26.41 | 4.97 | 0.00 | 3.53 |
7170 | 9648 | 2.612721 | GGGTGTTTGGTCAAATGCCATC | 60.613 | 50.000 | 15.54 | 5.11 | 35.71 | 3.51 |
7224 | 9702 | 2.042741 | TACGAAGGATGGCGGGGA | 60.043 | 61.111 | 0.00 | 0.00 | 0.00 | 4.81 |
7225 | 9703 | 2.428925 | TACGAAGGATGGCGGGGAC | 61.429 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
7236 | 9714 | 1.675641 | GCGGGGACACTCAAGCATT | 60.676 | 57.895 | 0.00 | 0.00 | 0.00 | 3.56 |
7340 | 9819 | 5.036090 | GTGCATGCATGATTCATTTAACGA | 58.964 | 37.500 | 30.64 | 0.00 | 0.00 | 3.85 |
7342 | 9821 | 5.163632 | TGCATGCATGATTCATTTAACGAGT | 60.164 | 36.000 | 30.64 | 0.00 | 0.00 | 4.18 |
7375 | 9854 | 1.136169 | CGTCATATGGCATGCACATCG | 60.136 | 52.381 | 21.36 | 14.71 | 0.00 | 3.84 |
7377 | 9856 | 3.066380 | GTCATATGGCATGCACATCGTA | 58.934 | 45.455 | 21.36 | 8.01 | 0.00 | 3.43 |
7399 | 9879 | 4.801891 | ACATGAATGCAATGTGAAGTCAC | 58.198 | 39.130 | 0.00 | 4.43 | 46.59 | 3.67 |
7402 | 9882 | 6.207221 | ACATGAATGCAATGTGAAGTCACTAA | 59.793 | 34.615 | 12.43 | 0.00 | 46.55 | 2.24 |
7403 | 9883 | 6.822667 | TGAATGCAATGTGAAGTCACTAAT | 57.177 | 33.333 | 12.43 | 0.00 | 46.55 | 1.73 |
7435 | 9919 | 4.215827 | GGTACACCATCCTGACTACTATCG | 59.784 | 50.000 | 0.00 | 0.00 | 35.64 | 2.92 |
7446 | 9934 | 3.131396 | GACTACTATCGCCATTTGTGGG | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
7462 | 9950 | 1.223487 | GGGGCGGTTGATAAGCTGA | 59.777 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
7534 | 10024 | 7.818930 | TGCTTCTTCTTTTCAACTTGTTGATTT | 59.181 | 29.630 | 15.67 | 0.00 | 0.00 | 2.17 |
7562 | 10052 | 8.692110 | TTATTCATTCATTCACTCAATGTTGC | 57.308 | 30.769 | 0.00 | 0.00 | 42.47 | 4.17 |
7571 | 10066 | 8.432647 | CATTCACTCAATGTTGCTGTGTAGCA | 62.433 | 42.308 | 13.85 | 0.00 | 45.49 | 3.49 |
7609 | 10104 | 1.686587 | TGTACCACATGATAGAGGGCG | 59.313 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
7612 | 10107 | 0.979665 | CCACATGATAGAGGGCGGAT | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
7617 | 10112 | 3.055530 | ACATGATAGAGGGCGGATCATTC | 60.056 | 47.826 | 0.00 | 0.00 | 38.06 | 2.67 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 1.856629 | CAGCTGGAATGGGGAACAAT | 58.143 | 50.000 | 5.57 | 0.00 | 0.00 | 2.71 |
58 | 59 | 1.304381 | GCAGCTGGAATGGGGAACA | 60.304 | 57.895 | 17.12 | 0.00 | 0.00 | 3.18 |
86 | 89 | 3.267483 | GCGCCCAAAGTTCATTACTAGA | 58.733 | 45.455 | 0.00 | 0.00 | 35.54 | 2.43 |
107 | 1539 | 1.065928 | GGTGGCACGATAGAGACGG | 59.934 | 63.158 | 12.17 | 0.00 | 37.62 | 4.79 |
123 | 1639 | 1.544691 | CTTGCTGACAGTAGTACGGGT | 59.455 | 52.381 | 3.99 | 3.09 | 0.00 | 5.28 |
537 | 2459 | 2.031120 | CAGGCCCAAAAACTTGTCAGA | 58.969 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
548 | 2470 | 4.912395 | AAGCACGGCAGGCCCAAA | 62.912 | 61.111 | 0.00 | 0.00 | 0.00 | 3.28 |
549 | 2471 | 2.985539 | TAAAAGCACGGCAGGCCCAA | 62.986 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
623 | 2548 | 0.179161 | CACTGTCGGCGGAGAAGTAG | 60.179 | 60.000 | 7.21 | 0.00 | 0.00 | 2.57 |
689 | 2614 | 6.963796 | CAATATCTGGAGAAAATTTCGAGGG | 58.036 | 40.000 | 0.00 | 0.00 | 34.02 | 4.30 |
725 | 2651 | 2.379972 | CTAATCCGTGAGACCTGGTCT | 58.620 | 52.381 | 28.70 | 28.70 | 46.42 | 3.85 |
727 | 2653 | 0.824759 | GCTAATCCGTGAGACCTGGT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
728 | 2654 | 0.824109 | TGCTAATCCGTGAGACCTGG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
729 | 2655 | 1.202463 | CCTGCTAATCCGTGAGACCTG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
730 | 2656 | 1.115467 | CCTGCTAATCCGTGAGACCT | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
731 | 2657 | 0.824759 | ACCTGCTAATCCGTGAGACC | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
733 | 2659 | 1.847328 | TCACCTGCTAATCCGTGAGA | 58.153 | 50.000 | 0.00 | 0.00 | 31.80 | 3.27 |
735 | 2661 | 1.476891 | GTCTCACCTGCTAATCCGTGA | 59.523 | 52.381 | 0.00 | 0.00 | 34.26 | 4.35 |
736 | 2662 | 1.471676 | GGTCTCACCTGCTAATCCGTG | 60.472 | 57.143 | 0.00 | 0.00 | 34.73 | 4.94 |
737 | 2663 | 0.824759 | GGTCTCACCTGCTAATCCGT | 59.175 | 55.000 | 0.00 | 0.00 | 34.73 | 4.69 |
738 | 2664 | 0.105039 | GGGTCTCACCTGCTAATCCG | 59.895 | 60.000 | 0.00 | 0.00 | 38.64 | 4.18 |
739 | 2665 | 1.204146 | TGGGTCTCACCTGCTAATCC | 58.796 | 55.000 | 0.00 | 0.00 | 38.64 | 3.01 |
740 | 2666 | 2.224402 | GGATGGGTCTCACCTGCTAATC | 60.224 | 54.545 | 0.00 | 0.00 | 38.64 | 1.75 |
741 | 2667 | 1.771255 | GGATGGGTCTCACCTGCTAAT | 59.229 | 52.381 | 0.00 | 0.00 | 38.64 | 1.73 |
742 | 2668 | 1.204146 | GGATGGGTCTCACCTGCTAA | 58.796 | 55.000 | 0.00 | 0.00 | 38.64 | 3.09 |
743 | 2669 | 0.339859 | AGGATGGGTCTCACCTGCTA | 59.660 | 55.000 | 0.00 | 0.00 | 38.64 | 3.49 |
744 | 2670 | 1.081833 | AGGATGGGTCTCACCTGCT | 59.918 | 57.895 | 0.00 | 0.00 | 38.64 | 4.24 |
745 | 2671 | 1.222936 | CAGGATGGGTCTCACCTGC | 59.777 | 63.158 | 7.99 | 0.00 | 42.30 | 4.85 |
747 | 2673 | 1.504912 | CATCAGGATGGGTCTCACCT | 58.495 | 55.000 | 1.25 | 0.00 | 38.64 | 4.00 |
760 | 2686 | 1.091771 | GCCACGTGTCATCCATCAGG | 61.092 | 60.000 | 15.65 | 0.00 | 0.00 | 3.86 |
761 | 2687 | 0.391528 | TGCCACGTGTCATCCATCAG | 60.392 | 55.000 | 15.65 | 0.00 | 0.00 | 2.90 |
762 | 2688 | 0.252761 | ATGCCACGTGTCATCCATCA | 59.747 | 50.000 | 15.65 | 0.00 | 0.00 | 3.07 |
763 | 2689 | 0.940126 | GATGCCACGTGTCATCCATC | 59.060 | 55.000 | 25.20 | 17.45 | 34.52 | 3.51 |
764 | 2690 | 3.085208 | GATGCCACGTGTCATCCAT | 57.915 | 52.632 | 25.20 | 13.68 | 34.52 | 3.41 |
765 | 2691 | 4.615901 | GATGCCACGTGTCATCCA | 57.384 | 55.556 | 25.20 | 9.83 | 34.52 | 3.41 |
767 | 2693 | 2.089854 | GTGGATGCCACGTGTCATC | 58.910 | 57.895 | 27.01 | 27.01 | 44.95 | 2.92 |
768 | 2694 | 4.301505 | GTGGATGCCACGTGTCAT | 57.698 | 55.556 | 12.59 | 12.59 | 44.95 | 3.06 |
776 | 2702 | 2.288948 | GCTTTGTGATTTGTGGATGCCA | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
777 | 2703 | 2.288948 | TGCTTTGTGATTTGTGGATGCC | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
778 | 2704 | 3.029320 | TGCTTTGTGATTTGTGGATGC | 57.971 | 42.857 | 0.00 | 0.00 | 0.00 | 3.91 |
779 | 2705 | 4.178540 | GGATGCTTTGTGATTTGTGGATG | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
780 | 2706 | 3.833650 | TGGATGCTTTGTGATTTGTGGAT | 59.166 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
781 | 2707 | 3.005684 | GTGGATGCTTTGTGATTTGTGGA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
782 | 2708 | 3.319755 | GTGGATGCTTTGTGATTTGTGG | 58.680 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
783 | 2709 | 3.319755 | GGTGGATGCTTTGTGATTTGTG | 58.680 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
784 | 2710 | 2.299867 | GGGTGGATGCTTTGTGATTTGT | 59.700 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
785 | 2711 | 2.354003 | GGGGTGGATGCTTTGTGATTTG | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
786 | 2712 | 1.901833 | GGGGTGGATGCTTTGTGATTT | 59.098 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
787 | 2713 | 1.203162 | TGGGGTGGATGCTTTGTGATT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
788 | 2714 | 0.409092 | TGGGGTGGATGCTTTGTGAT | 59.591 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
789 | 2715 | 0.539438 | GTGGGGTGGATGCTTTGTGA | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
790 | 2716 | 1.535204 | GGTGGGGTGGATGCTTTGTG | 61.535 | 60.000 | 0.00 | 0.00 | 0.00 | 3.33 |
791 | 2717 | 1.228862 | GGTGGGGTGGATGCTTTGT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
792 | 2718 | 1.984026 | GGGTGGGGTGGATGCTTTG | 60.984 | 63.158 | 0.00 | 0.00 | 0.00 | 2.77 |
793 | 2719 | 2.445155 | GGGTGGGGTGGATGCTTT | 59.555 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
794 | 2720 | 3.672503 | GGGGTGGGGTGGATGCTT | 61.673 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
797 | 2723 | 4.060667 | GTGGGGGTGGGGTGGATG | 62.061 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
802 | 2728 | 4.542627 | TTCAGGTGGGGGTGGGGT | 62.543 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
803 | 2729 | 2.514516 | GATTTCAGGTGGGGGTGGGG | 62.515 | 65.000 | 0.00 | 0.00 | 0.00 | 4.96 |
804 | 2730 | 1.000359 | GATTTCAGGTGGGGGTGGG | 60.000 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
805 | 2731 | 0.323725 | CTGATTTCAGGTGGGGGTGG | 60.324 | 60.000 | 0.00 | 0.00 | 40.20 | 4.61 |
806 | 2732 | 0.698238 | TCTGATTTCAGGTGGGGGTG | 59.302 | 55.000 | 7.68 | 0.00 | 43.91 | 4.61 |
807 | 2733 | 0.995024 | CTCTGATTTCAGGTGGGGGT | 59.005 | 55.000 | 7.68 | 0.00 | 43.91 | 4.95 |
808 | 2734 | 0.257039 | CCTCTGATTTCAGGTGGGGG | 59.743 | 60.000 | 7.68 | 0.52 | 43.91 | 5.40 |
809 | 2735 | 0.257039 | CCCTCTGATTTCAGGTGGGG | 59.743 | 60.000 | 21.51 | 18.19 | 45.46 | 4.96 |
810 | 2736 | 2.186369 | TCCCCTCTGATTTCAGGTGGG | 61.186 | 57.143 | 21.95 | 21.95 | 46.96 | 4.61 |
811 | 2737 | 1.211457 | CTCCCCTCTGATTTCAGGTGG | 59.789 | 57.143 | 7.68 | 9.75 | 43.91 | 4.61 |
812 | 2738 | 2.170187 | CTCTCCCCTCTGATTTCAGGTG | 59.830 | 54.545 | 7.68 | 2.03 | 43.91 | 4.00 |
813 | 2739 | 2.045047 | TCTCTCCCCTCTGATTTCAGGT | 59.955 | 50.000 | 7.68 | 0.00 | 43.91 | 4.00 |
814 | 2740 | 2.756907 | TCTCTCCCCTCTGATTTCAGG | 58.243 | 52.381 | 7.68 | 0.00 | 43.91 | 3.86 |
815 | 2741 | 5.837979 | TCTAATCTCTCCCCTCTGATTTCAG | 59.162 | 44.000 | 0.97 | 0.97 | 45.08 | 3.02 |
816 | 2742 | 5.781827 | TCTAATCTCTCCCCTCTGATTTCA | 58.218 | 41.667 | 0.00 | 0.00 | 32.33 | 2.69 |
817 | 2743 | 6.700352 | CATCTAATCTCTCCCCTCTGATTTC | 58.300 | 44.000 | 0.00 | 0.00 | 32.33 | 2.17 |
818 | 2744 | 5.012975 | GCATCTAATCTCTCCCCTCTGATTT | 59.987 | 44.000 | 0.00 | 0.00 | 32.33 | 2.17 |
819 | 2745 | 4.531732 | GCATCTAATCTCTCCCCTCTGATT | 59.468 | 45.833 | 0.00 | 0.00 | 34.16 | 2.57 |
820 | 2746 | 4.095946 | GCATCTAATCTCTCCCCTCTGAT | 58.904 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
821 | 2747 | 3.141838 | AGCATCTAATCTCTCCCCTCTGA | 59.858 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
822 | 2748 | 3.509442 | AGCATCTAATCTCTCCCCTCTG | 58.491 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
823 | 2749 | 3.921287 | AGCATCTAATCTCTCCCCTCT | 57.079 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
824 | 2750 | 4.102367 | ACAAAGCATCTAATCTCTCCCCTC | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
825 | 2751 | 4.043596 | ACAAAGCATCTAATCTCTCCCCT | 58.956 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
826 | 2752 | 4.133078 | CACAAAGCATCTAATCTCTCCCC | 58.867 | 47.826 | 0.00 | 0.00 | 0.00 | 4.81 |
827 | 2753 | 5.028549 | TCACAAAGCATCTAATCTCTCCC | 57.971 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
828 | 2754 | 7.066766 | ACAAATCACAAAGCATCTAATCTCTCC | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
829 | 2755 | 7.909121 | CACAAATCACAAAGCATCTAATCTCTC | 59.091 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
830 | 2756 | 7.609146 | TCACAAATCACAAAGCATCTAATCTCT | 59.391 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
831 | 2757 | 7.755591 | TCACAAATCACAAAGCATCTAATCTC | 58.244 | 34.615 | 0.00 | 0.00 | 0.00 | 2.75 |
832 | 2758 | 7.692460 | TCACAAATCACAAAGCATCTAATCT | 57.308 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
833 | 2759 | 8.804743 | CATTCACAAATCACAAAGCATCTAATC | 58.195 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
834 | 2760 | 7.277098 | GCATTCACAAATCACAAAGCATCTAAT | 59.723 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
835 | 2761 | 6.587226 | GCATTCACAAATCACAAAGCATCTAA | 59.413 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
836 | 2762 | 6.094719 | GCATTCACAAATCACAAAGCATCTA | 58.905 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
837 | 2763 | 4.927425 | GCATTCACAAATCACAAAGCATCT | 59.073 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
838 | 2764 | 4.092383 | GGCATTCACAAATCACAAAGCATC | 59.908 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
839 | 2765 | 3.998341 | GGCATTCACAAATCACAAAGCAT | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
840 | 2766 | 3.181468 | TGGCATTCACAAATCACAAAGCA | 60.181 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
841 | 2767 | 3.184986 | GTGGCATTCACAAATCACAAAGC | 59.815 | 43.478 | 0.00 | 0.00 | 45.39 | 3.51 |
842 | 2768 | 4.977741 | GTGGCATTCACAAATCACAAAG | 57.022 | 40.909 | 0.00 | 0.00 | 45.39 | 2.77 |
858 | 2784 | 2.756207 | CCTTGATGAATGACATGTGGCA | 59.244 | 45.455 | 1.15 | 0.00 | 39.56 | 4.92 |
859 | 2785 | 2.480759 | GCCTTGATGAATGACATGTGGC | 60.481 | 50.000 | 1.15 | 1.27 | 39.56 | 5.01 |
860 | 2786 | 2.223409 | CGCCTTGATGAATGACATGTGG | 60.223 | 50.000 | 1.15 | 0.00 | 39.56 | 4.17 |
861 | 2787 | 2.223409 | CCGCCTTGATGAATGACATGTG | 60.223 | 50.000 | 1.15 | 0.00 | 39.56 | 3.21 |
862 | 2788 | 2.019249 | CCGCCTTGATGAATGACATGT | 58.981 | 47.619 | 0.00 | 0.00 | 39.56 | 3.21 |
863 | 2789 | 1.335810 | CCCGCCTTGATGAATGACATG | 59.664 | 52.381 | 0.00 | 0.00 | 39.56 | 3.21 |
864 | 2790 | 1.064463 | ACCCGCCTTGATGAATGACAT | 60.064 | 47.619 | 0.00 | 0.00 | 42.47 | 3.06 |
865 | 2791 | 0.327924 | ACCCGCCTTGATGAATGACA | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
866 | 2792 | 1.017387 | GACCCGCCTTGATGAATGAC | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
867 | 2793 | 0.911769 | AGACCCGCCTTGATGAATGA | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
868 | 2794 | 1.303309 | GAGACCCGCCTTGATGAATG | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
869 | 2795 | 0.911769 | TGAGACCCGCCTTGATGAAT | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
870 | 2796 | 0.036388 | GTGAGACCCGCCTTGATGAA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
871 | 2797 | 1.596934 | GTGAGACCCGCCTTGATGA | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
872 | 2798 | 1.450312 | GGTGAGACCCGCCTTGATG | 60.450 | 63.158 | 0.00 | 0.00 | 42.19 | 3.07 |
873 | 2799 | 2.990479 | GGTGAGACCCGCCTTGAT | 59.010 | 61.111 | 0.00 | 0.00 | 42.19 | 2.57 |
878 | 2804 | 0.539986 | TAAATCAGGTGAGACCCGCC | 59.460 | 55.000 | 0.00 | 0.00 | 45.81 | 6.13 |
879 | 2805 | 2.622064 | ATAAATCAGGTGAGACCCGC | 57.378 | 50.000 | 0.00 | 0.00 | 39.75 | 6.13 |
880 | 2806 | 5.243954 | TCTCATATAAATCAGGTGAGACCCG | 59.756 | 44.000 | 0.00 | 0.00 | 40.06 | 5.28 |
881 | 2807 | 6.672266 | TCTCATATAAATCAGGTGAGACCC | 57.328 | 41.667 | 0.00 | 0.00 | 40.06 | 4.46 |
884 | 2810 | 6.268617 | CCAGGTCTCATATAAATCAGGTGAGA | 59.731 | 42.308 | 0.00 | 0.00 | 41.99 | 3.27 |
885 | 2811 | 6.042552 | ACCAGGTCTCATATAAATCAGGTGAG | 59.957 | 42.308 | 0.00 | 0.00 | 38.07 | 3.51 |
886 | 2812 | 5.905331 | ACCAGGTCTCATATAAATCAGGTGA | 59.095 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
887 | 2813 | 6.042552 | AGACCAGGTCTCATATAAATCAGGTG | 59.957 | 42.308 | 17.31 | 0.00 | 38.71 | 4.00 |
888 | 2814 | 6.146760 | AGACCAGGTCTCATATAAATCAGGT | 58.853 | 40.000 | 17.31 | 0.00 | 38.71 | 4.00 |
889 | 2815 | 6.678568 | AGACCAGGTCTCATATAAATCAGG | 57.321 | 41.667 | 17.31 | 0.00 | 38.71 | 3.86 |
922 | 2848 | 2.238521 | GGATGTGTCAGCAGGGAAAAA | 58.761 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
923 | 2849 | 1.144708 | TGGATGTGTCAGCAGGGAAAA | 59.855 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
924 | 2850 | 0.770499 | TGGATGTGTCAGCAGGGAAA | 59.230 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
925 | 2851 | 0.994247 | ATGGATGTGTCAGCAGGGAA | 59.006 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
926 | 2852 | 0.543277 | GATGGATGTGTCAGCAGGGA | 59.457 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
927 | 2853 | 0.465097 | GGATGGATGTGTCAGCAGGG | 60.465 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
928 | 2854 | 0.253894 | TGGATGGATGTGTCAGCAGG | 59.746 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
929 | 2855 | 1.376543 | GTGGATGGATGTGTCAGCAG | 58.623 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
930 | 2856 | 0.391528 | CGTGGATGGATGTGTCAGCA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
931 | 2857 | 0.391661 | ACGTGGATGGATGTGTCAGC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
932 | 2858 | 2.099141 | AACGTGGATGGATGTGTCAG | 57.901 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
933 | 2859 | 2.150390 | CAAACGTGGATGGATGTGTCA | 58.850 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
934 | 2860 | 2.159627 | GTCAAACGTGGATGGATGTGTC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
950 | 2876 | 2.289444 | CGGTTAAGGCTCTGGAGTCAAA | 60.289 | 50.000 | 5.00 | 0.00 | 34.98 | 2.69 |
964 | 2893 | 2.048877 | ACGGACGTGGCGGTTAAG | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 1.85 |
1228 | 3157 | 1.373812 | GGTACGCACCTGGGTTCTT | 59.626 | 57.895 | 0.00 | 0.00 | 42.11 | 2.52 |
1245 | 3174 | 3.153024 | CGGCCACCGGATTATATGG | 57.847 | 57.895 | 9.46 | 5.03 | 44.15 | 2.74 |
1281 | 3215 | 1.467678 | ATAGCTCGGATCCGCTTGCT | 61.468 | 55.000 | 33.81 | 33.81 | 40.64 | 3.91 |
1331 | 3298 | 0.321919 | ACACCATGAAGTCTGCGCAT | 60.322 | 50.000 | 12.24 | 0.00 | 0.00 | 4.73 |
1344 | 3311 | 2.718073 | GGTCGCCGAGGTACACCAT | 61.718 | 63.158 | 0.38 | 0.00 | 38.89 | 3.55 |
1456 | 3423 | 2.590575 | CGTGGTTGCCGAACACCT | 60.591 | 61.111 | 0.00 | 0.00 | 33.27 | 4.00 |
1593 | 3638 | 1.296392 | CCGTCATCAGCTTGACCCA | 59.704 | 57.895 | 11.97 | 0.00 | 42.46 | 4.51 |
1599 | 3644 | 2.185350 | CTCGGCCGTCATCAGCTT | 59.815 | 61.111 | 27.15 | 0.00 | 0.00 | 3.74 |
1713 | 3764 | 2.175035 | TTACAAGGGTCCTTCGGCCG | 62.175 | 60.000 | 22.12 | 22.12 | 33.42 | 6.13 |
1723 | 3774 | 2.874457 | GCATCAAGGACGTTACAAGGGT | 60.874 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1724 | 3775 | 1.737793 | GCATCAAGGACGTTACAAGGG | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
1725 | 3776 | 1.393539 | CGCATCAAGGACGTTACAAGG | 59.606 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
1735 | 3786 | 3.435275 | AGAGATATAGCCGCATCAAGGA | 58.565 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
1788 | 3839 | 3.921119 | TGCGACATTTCTTTCAATGCT | 57.079 | 38.095 | 0.00 | 0.00 | 37.63 | 3.79 |
1799 | 3850 | 1.803334 | TTACCTCGCTTGCGACATTT | 58.197 | 45.000 | 13.93 | 1.50 | 0.00 | 2.32 |
1811 | 3862 | 3.424433 | GGTTGTTTGCGAAGATTACCTCG | 60.424 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
1843 | 3894 | 9.799223 | AGCCAACTATATATCTTTCCCCTATTA | 57.201 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1913 | 3971 | 3.435671 | CGGACCTTGTTTGTATCTGGTTC | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
1945 | 4004 | 7.443879 | GCATTTGGGGTTCTTCTTTTATTTTGA | 59.556 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2089 | 4160 | 3.565482 | CAGTTTGCAGGTGCCGATATTAT | 59.435 | 43.478 | 0.00 | 0.00 | 41.18 | 1.28 |
2093 | 4164 | 0.676466 | CCAGTTTGCAGGTGCCGATA | 60.676 | 55.000 | 0.00 | 0.00 | 41.18 | 2.92 |
2113 | 4184 | 5.465390 | CGTGACTCACAGATACTTCCAAAAA | 59.535 | 40.000 | 9.84 | 0.00 | 33.40 | 1.94 |
2155 | 4227 | 2.336945 | TAGTCTTGATCGCGAGGGTA | 57.663 | 50.000 | 16.66 | 0.00 | 0.00 | 3.69 |
2303 | 4384 | 4.828072 | AGGTTGTTCTAGGATCACTTCC | 57.172 | 45.455 | 0.00 | 0.00 | 45.85 | 3.46 |
2368 | 4450 | 0.460284 | CGTGATGGTCTCTTTCCGGG | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
2518 | 4603 | 3.519510 | AGAGCTTGTGATGGGCTAAGTTA | 59.480 | 43.478 | 0.00 | 0.00 | 36.37 | 2.24 |
2767 | 4857 | 0.959553 | GAGTGTTGGTCCGACTGAGA | 59.040 | 55.000 | 10.75 | 0.00 | 0.00 | 3.27 |
3085 | 5218 | 8.918202 | TTCCTTGTTGGGATATCACAATATAC | 57.082 | 34.615 | 22.81 | 11.67 | 41.83 | 1.47 |
3137 | 5292 | 5.127682 | AGTTGCAGGTGAAGATTGAAGTTTT | 59.872 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3190 | 5352 | 2.737783 | CGTTGTTTGGCTATGTTACCGA | 59.262 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3216 | 5378 | 3.780850 | CCTCTAACCCACCTTGTCCTAAT | 59.219 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
3217 | 5379 | 3.178865 | CCTCTAACCCACCTTGTCCTAA | 58.821 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3336 | 5501 | 5.127682 | GCAAGATGACCATACCCTCAAAATT | 59.872 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3370 | 5535 | 4.188462 | TGAACTCGTTCTTCTTTCTTGCA | 58.812 | 39.130 | 10.75 | 0.00 | 40.14 | 4.08 |
3376 | 5541 | 6.986817 | TCTTCTTCATGAACTCGTTCTTCTTT | 59.013 | 34.615 | 3.38 | 0.00 | 40.14 | 2.52 |
3390 | 5555 | 4.693283 | ACGTCTGTTTGTCTTCTTCATGA | 58.307 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
3622 | 5811 | 3.724716 | CGTGGTGTTTCGTCAATATGCAG | 60.725 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
3771 | 5968 | 3.408634 | TGAGGAGTTTCCGGATTTGTTC | 58.591 | 45.455 | 4.15 | 0.00 | 42.75 | 3.18 |
3800 | 6000 | 6.071051 | GGGCAGAACAATACCAAATCCTTAAA | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
3841 | 6044 | 3.779759 | TCACTTTGCATGTTTGACAACC | 58.220 | 40.909 | 0.00 | 0.00 | 31.02 | 3.77 |
3957 | 6161 | 5.779529 | AATTTGCTCCTATGCCATGTTAG | 57.220 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
4088 | 6297 | 7.835634 | TCACGCATATAACAACTCATTAACA | 57.164 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4100 | 6310 | 3.942748 | TCCCCAAACTTCACGCATATAAC | 59.057 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
4109 | 6319 | 2.623416 | CAGAAAGGTCCCCAAACTTCAC | 59.377 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4124 | 6334 | 5.455525 | CAGAGTTTTACCGTTTTGCAGAAAG | 59.544 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4181 | 6400 | 1.956802 | CCACTTTCGGCCCAACTTC | 59.043 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
4196 | 6416 | 3.297620 | CACAGTTGGGCCAGCCAC | 61.298 | 66.667 | 17.45 | 7.82 | 37.98 | 5.01 |
4210 | 6433 | 3.957586 | CAGCCTCCCCTGTGCACA | 61.958 | 66.667 | 20.37 | 20.37 | 0.00 | 4.57 |
4367 | 6590 | 2.998949 | GCCCTCGATCTGGGGTTT | 59.001 | 61.111 | 18.54 | 0.00 | 44.71 | 3.27 |
4443 | 6666 | 2.962827 | GACGACCAGCGACGAGTCA | 61.963 | 63.158 | 0.00 | 0.00 | 44.57 | 3.41 |
4621 | 6844 | 4.832608 | GGAGCCGCCTGTAACCCG | 62.833 | 72.222 | 0.00 | 0.00 | 0.00 | 5.28 |
4642 | 6865 | 4.516195 | GCTTCCTCTCCGTCCCGC | 62.516 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
4643 | 6866 | 3.068691 | TGCTTCCTCTCCGTCCCG | 61.069 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
4644 | 6867 | 1.985116 | ACTGCTTCCTCTCCGTCCC | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
4723 | 6947 | 0.246086 | CTCTTCTCAGTGAGCGCCTT | 59.754 | 55.000 | 15.72 | 0.00 | 0.00 | 4.35 |
4732 | 6956 | 2.156098 | GTCGTCCTGTCTCTTCTCAGT | 58.844 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
4734 | 6958 | 1.157585 | CGTCGTCCTGTCTCTTCTCA | 58.842 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4751 | 6975 | 1.736645 | CCGCCAAGTTCGATGTCGT | 60.737 | 57.895 | 2.04 | 0.00 | 40.80 | 4.34 |
4757 | 6981 | 3.702048 | CCTCCCCGCCAAGTTCGA | 61.702 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
4830 | 7054 | 2.997315 | CCTCCGTCAGCCTCACCA | 60.997 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
4937 | 7162 | 1.176527 | CCCGTTTTGGATGTGCAGAT | 58.823 | 50.000 | 0.00 | 0.00 | 42.00 | 2.90 |
4948 | 7173 | 3.085533 | TCTCTCTCTCTCTCCCGTTTTG | 58.914 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4952 | 7177 | 0.837272 | CCTCTCTCTCTCTCTCCCGT | 59.163 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
4953 | 7178 | 0.108585 | CCCTCTCTCTCTCTCTCCCG | 59.891 | 65.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5189 | 7415 | 1.307309 | CATCCCCACCAATCCTGCA | 59.693 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
5439 | 7670 | 4.057432 | CAAACATCCACAAAATGTCACCC | 58.943 | 43.478 | 0.00 | 0.00 | 36.35 | 4.61 |
5453 | 7684 | 1.142870 | TCGGATCATCCCCAAACATCC | 59.857 | 52.381 | 0.00 | 0.00 | 31.13 | 3.51 |
5473 | 7704 | 2.094854 | GGACAGTCGTCACCGTTAGATT | 60.095 | 50.000 | 0.00 | 0.00 | 44.54 | 2.40 |
5475 | 7706 | 0.877071 | GGACAGTCGTCACCGTTAGA | 59.123 | 55.000 | 0.00 | 0.00 | 44.54 | 2.10 |
5577 | 7815 | 2.126071 | CCGTCTACACAGCCCACG | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
5604 | 7842 | 3.769300 | GCTTCCCTCTCTTCTCTTCTCTT | 59.231 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
5658 | 7898 | 4.500887 | GGCAATATAGCTGGTCTAACGTCA | 60.501 | 45.833 | 0.00 | 0.00 | 34.17 | 4.35 |
5670 | 7911 | 7.817962 | CCGTTAAACTATAGTGGCAATATAGCT | 59.182 | 37.037 | 31.17 | 21.88 | 36.91 | 3.32 |
5682 | 7924 | 4.831674 | AGCCCAACCGTTAAACTATAGT | 57.168 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
5713 | 7955 | 1.009829 | AGTTTCATCGCATTCGGAGC | 58.990 | 50.000 | 0.00 | 0.00 | 36.13 | 4.70 |
5788 | 8030 | 3.815809 | AGTGGTCGGAAAATGTTCTTGA | 58.184 | 40.909 | 0.00 | 0.00 | 33.92 | 3.02 |
5790 | 8032 | 4.461198 | AGAAGTGGTCGGAAAATGTTCTT | 58.539 | 39.130 | 0.00 | 0.00 | 33.92 | 2.52 |
5804 | 8046 | 9.457436 | ACGTCCAAATATTATTTTAGAAGTGGT | 57.543 | 29.630 | 12.61 | 3.97 | 0.00 | 4.16 |
5838 | 8081 | 2.822255 | AACCACACTTGCACGCGT | 60.822 | 55.556 | 5.58 | 5.58 | 0.00 | 6.01 |
5859 | 8102 | 2.359848 | TCTCTCCGTTGTTCGTTCTGAA | 59.640 | 45.455 | 0.00 | 0.00 | 37.94 | 3.02 |
5868 | 8111 | 3.447918 | TTTCGAGTTCTCTCCGTTGTT | 57.552 | 42.857 | 0.00 | 0.00 | 37.40 | 2.83 |
5886 | 8129 | 1.000717 | CTTGCATTCGTCCGGGTTTTT | 60.001 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
5984 | 8231 | 5.472137 | GTGCCAAGTGTCCTTTAGTTATTCA | 59.528 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5994 | 8242 | 0.606401 | CCGATGTGCCAAGTGTCCTT | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6002 | 8250 | 1.969064 | CCCGAAACCGATGTGCCAA | 60.969 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
6015 | 8263 | 0.033781 | CAGGGTTGTAACGTCCCGAA | 59.966 | 55.000 | 3.76 | 0.00 | 45.27 | 4.30 |
6021 | 8269 | 0.602905 | GCAGAGCAGGGTTGTAACGT | 60.603 | 55.000 | 0.00 | 0.00 | 0.00 | 3.99 |
6144 | 8392 | 3.142977 | AGAATACCAGCTCAGGGATCCTA | 59.857 | 47.826 | 12.58 | 0.00 | 28.06 | 2.94 |
6214 | 8576 | 2.110006 | GGGCTTCCTGATCTCGCC | 59.890 | 66.667 | 0.00 | 0.00 | 39.98 | 5.54 |
6303 | 8665 | 1.549170 | ACCTTAACTGAAGATCGCCGT | 59.451 | 47.619 | 0.00 | 0.00 | 37.33 | 5.68 |
6305 | 8667 | 3.118884 | TGGTACCTTAACTGAAGATCGCC | 60.119 | 47.826 | 14.36 | 0.00 | 37.33 | 5.54 |
6307 | 8669 | 5.103000 | CACTGGTACCTTAACTGAAGATCG | 58.897 | 45.833 | 14.36 | 0.00 | 37.33 | 3.69 |
6328 | 8690 | 7.547370 | AGTTTCAGAATTCAGATACAGTAGCAC | 59.453 | 37.037 | 18.71 | 1.33 | 0.00 | 4.40 |
6329 | 8691 | 7.615403 | AGTTTCAGAATTCAGATACAGTAGCA | 58.385 | 34.615 | 18.71 | 0.00 | 0.00 | 3.49 |
6356 | 8727 | 4.598062 | TCAATCAGACGTGCTAGTATTCG | 58.402 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
6393 | 8803 | 1.016130 | ACGAAGATCGCCTGCACAAG | 61.016 | 55.000 | 0.00 | 0.00 | 45.12 | 3.16 |
6516 | 8926 | 6.324561 | TCAGAGATATCAACAATCCTCTCG | 57.675 | 41.667 | 5.32 | 0.00 | 34.08 | 4.04 |
6543 | 8953 | 5.221126 | GGAGTTGACAGAGAAATGCTTTGTT | 60.221 | 40.000 | 0.00 | 0.00 | 41.57 | 2.83 |
6544 | 8954 | 4.276926 | GGAGTTGACAGAGAAATGCTTTGT | 59.723 | 41.667 | 0.00 | 0.00 | 43.93 | 2.83 |
6545 | 8955 | 4.518211 | AGGAGTTGACAGAGAAATGCTTTG | 59.482 | 41.667 | 0.00 | 0.00 | 34.99 | 2.77 |
6701 | 9121 | 9.965902 | AATTTGAAGATACCTGACTAAATCTGT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
6712 | 9135 | 5.551760 | AGTTGCGAATTTGAAGATACCTG | 57.448 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
6716 | 9139 | 5.465390 | CCGGATAGTTGCGAATTTGAAGATA | 59.535 | 40.000 | 0.00 | 0.00 | 39.29 | 1.98 |
6717 | 9140 | 4.273480 | CCGGATAGTTGCGAATTTGAAGAT | 59.727 | 41.667 | 0.00 | 0.00 | 39.29 | 2.40 |
6718 | 9141 | 3.621268 | CCGGATAGTTGCGAATTTGAAGA | 59.379 | 43.478 | 0.00 | 0.00 | 39.29 | 2.87 |
6719 | 9142 | 3.621268 | TCCGGATAGTTGCGAATTTGAAG | 59.379 | 43.478 | 0.00 | 0.00 | 39.29 | 3.02 |
6720 | 9143 | 3.601435 | TCCGGATAGTTGCGAATTTGAA | 58.399 | 40.909 | 0.00 | 0.00 | 39.29 | 2.69 |
6721 | 9144 | 3.254470 | TCCGGATAGTTGCGAATTTGA | 57.746 | 42.857 | 0.00 | 0.00 | 39.29 | 2.69 |
6726 | 9149 | 1.079875 | GCGTTCCGGATAGTTGCGAA | 61.080 | 55.000 | 4.15 | 0.00 | 39.29 | 4.70 |
6727 | 9150 | 1.517694 | GCGTTCCGGATAGTTGCGA | 60.518 | 57.895 | 4.15 | 0.00 | 39.29 | 5.10 |
6728 | 9151 | 1.151777 | ATGCGTTCCGGATAGTTGCG | 61.152 | 55.000 | 4.15 | 4.87 | 35.91 | 4.85 |
6730 | 9153 | 0.937304 | CCATGCGTTCCGGATAGTTG | 59.063 | 55.000 | 4.15 | 5.05 | 35.39 | 3.16 |
6731 | 9154 | 0.539986 | ACCATGCGTTCCGGATAGTT | 59.460 | 50.000 | 4.15 | 0.00 | 35.39 | 2.24 |
6732 | 9155 | 0.539986 | AACCATGCGTTCCGGATAGT | 59.460 | 50.000 | 4.15 | 0.00 | 35.39 | 2.12 |
6735 | 9158 | 0.322098 | TCAAACCATGCGTTCCGGAT | 60.322 | 50.000 | 4.15 | 0.00 | 38.69 | 4.18 |
6736 | 9159 | 0.535328 | TTCAAACCATGCGTTCCGGA | 60.535 | 50.000 | 0.00 | 0.00 | 31.78 | 5.14 |
6737 | 9160 | 0.386731 | GTTCAAACCATGCGTTCCGG | 60.387 | 55.000 | 0.00 | 0.00 | 31.78 | 5.14 |
6738 | 9161 | 0.724453 | CGTTCAAACCATGCGTTCCG | 60.724 | 55.000 | 0.83 | 0.00 | 31.78 | 4.30 |
6739 | 9162 | 0.309612 | ACGTTCAAACCATGCGTTCC | 59.690 | 50.000 | 0.83 | 0.00 | 31.78 | 3.62 |
6742 | 9181 | 0.736053 | AACACGTTCAAACCATGCGT | 59.264 | 45.000 | 0.00 | 0.00 | 36.13 | 5.24 |
6751 | 9190 | 6.377780 | CATGTTGGATGATAAACACGTTCAA | 58.622 | 36.000 | 0.00 | 0.00 | 39.00 | 2.69 |
6752 | 9191 | 5.106357 | CCATGTTGGATGATAAACACGTTCA | 60.106 | 40.000 | 0.00 | 0.00 | 40.96 | 3.18 |
6754 | 9193 | 5.007034 | TCCATGTTGGATGATAAACACGTT | 58.993 | 37.500 | 0.00 | 0.00 | 42.67 | 3.99 |
6792 | 9235 | 3.332409 | CGCGTTTGAACCGGTCGT | 61.332 | 61.111 | 8.04 | 0.00 | 0.00 | 4.34 |
6804 | 9247 | 2.867472 | CGGGAAAAGATGCGCGTT | 59.133 | 55.556 | 8.43 | 0.00 | 35.99 | 4.84 |
6806 | 9249 | 2.794627 | TTTGCGGGAAAAGATGCGCG | 62.795 | 55.000 | 0.00 | 0.00 | 42.40 | 6.86 |
6807 | 9250 | 0.458370 | ATTTGCGGGAAAAGATGCGC | 60.458 | 50.000 | 0.00 | 0.00 | 0.00 | 6.09 |
6812 | 9255 | 2.962421 | ACTTCCAATTTGCGGGAAAAGA | 59.038 | 40.909 | 0.00 | 0.00 | 42.31 | 2.52 |
6813 | 9256 | 3.385193 | ACTTCCAATTTGCGGGAAAAG | 57.615 | 42.857 | 0.00 | 0.00 | 42.31 | 2.27 |
6845 | 9309 | 3.692406 | GACTCCCGCGACAACCCT | 61.692 | 66.667 | 8.23 | 0.00 | 0.00 | 4.34 |
6938 | 9407 | 4.108570 | TGCAAAGTAAGAGGGAATAGGGA | 58.891 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
6979 | 9448 | 1.220749 | GAGGTACAATGGCAGCGGA | 59.779 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
7011 | 9483 | 2.149803 | CTGACGTCCCACAACGCCTA | 62.150 | 60.000 | 14.12 | 0.00 | 46.40 | 3.93 |
7016 | 9488 | 1.647084 | GTTGCTGACGTCCCACAAC | 59.353 | 57.895 | 21.76 | 21.76 | 34.47 | 3.32 |
7021 | 9493 | 2.668550 | GGTGGTTGCTGACGTCCC | 60.669 | 66.667 | 14.12 | 6.98 | 0.00 | 4.46 |
7029 | 9502 | 2.123897 | GTGTGGGTGGTGGTTGCT | 60.124 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
7080 | 9554 | 2.309162 | AGCTAGCTATGGACGGATCCTA | 59.691 | 50.000 | 17.69 | 0.00 | 46.43 | 2.94 |
7100 | 9574 | 0.613853 | TCGACAGGGGTTGGAGGTAG | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
7108 | 9583 | 1.590147 | GACATCGTCGACAGGGGTT | 59.410 | 57.895 | 17.16 | 0.00 | 0.00 | 4.11 |
7109 | 9586 | 2.348888 | GGACATCGTCGACAGGGGT | 61.349 | 63.158 | 17.16 | 7.60 | 32.65 | 4.95 |
7149 | 9627 | 0.755686 | TGGCATTTGACCAAACACCC | 59.244 | 50.000 | 11.03 | 6.91 | 33.12 | 4.61 |
7170 | 9648 | 6.960992 | TGACATGAAAATCGAAAATAAGCTCG | 59.039 | 34.615 | 0.00 | 0.00 | 36.39 | 5.03 |
7236 | 9714 | 2.777094 | TCGCACAACAATTCATCCTCA | 58.223 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
7245 | 9723 | 1.209898 | CCACGCATCGCACAACAAT | 59.790 | 52.632 | 0.00 | 0.00 | 0.00 | 2.71 |
7336 | 9815 | 1.334059 | CGCAATGTGCTTTCACTCGTT | 60.334 | 47.619 | 0.00 | 0.00 | 42.25 | 3.85 |
7340 | 9819 | 1.308047 | TGACGCAATGTGCTTTCACT | 58.692 | 45.000 | 0.00 | 0.00 | 42.25 | 3.41 |
7342 | 9821 | 3.181498 | CCATATGACGCAATGTGCTTTCA | 60.181 | 43.478 | 3.65 | 1.76 | 42.25 | 2.69 |
7357 | 9836 | 2.259266 | ACGATGTGCATGCCATATGA | 57.741 | 45.000 | 16.68 | 0.00 | 0.00 | 2.15 |
7359 | 9838 | 3.124578 | TGTACGATGTGCATGCCATAT | 57.875 | 42.857 | 16.68 | 6.68 | 0.00 | 1.78 |
7375 | 9854 | 5.796935 | GTGACTTCACATTGCATTCATGTAC | 59.203 | 40.000 | 4.43 | 0.00 | 45.75 | 2.90 |
7377 | 9856 | 4.801891 | GTGACTTCACATTGCATTCATGT | 58.198 | 39.130 | 4.43 | 0.00 | 45.75 | 3.21 |
7424 | 9908 | 3.431626 | CCCACAAATGGCGATAGTAGTCA | 60.432 | 47.826 | 0.00 | 0.00 | 45.76 | 3.41 |
7428 | 9912 | 1.476110 | GCCCCACAAATGGCGATAGTA | 60.476 | 52.381 | 0.00 | 0.00 | 45.76 | 1.82 |
7435 | 9919 | 3.310307 | AACCGCCCCACAAATGGC | 61.310 | 61.111 | 0.00 | 0.00 | 45.76 | 4.40 |
7446 | 9934 | 1.017387 | CCTTCAGCTTATCAACCGCC | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
7462 | 9950 | 0.314935 | CGCAATGTTCACCTTGCCTT | 59.685 | 50.000 | 12.58 | 0.00 | 42.11 | 4.35 |
7490 | 9978 | 4.387862 | GAAGCAAAACTTACGATTCCTCGA | 59.612 | 41.667 | 1.54 | 0.00 | 42.60 | 4.04 |
7538 | 10028 | 7.971722 | CAGCAACATTGAGTGAATGAATGAATA | 59.028 | 33.333 | 9.45 | 0.00 | 43.87 | 1.75 |
7562 | 10052 | 3.842602 | CACGGACGTGCTACACAG | 58.157 | 61.111 | 12.16 | 0.00 | 39.39 | 3.66 |
7586 | 10081 | 3.615110 | GCCCTCTATCATGTGGTACATCG | 60.615 | 52.174 | 0.00 | 0.00 | 44.52 | 3.84 |
7609 | 10104 | 3.001634 | CAGTGTATGTGCGTGAATGATCC | 59.998 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
7612 | 10107 | 3.038788 | ACAGTGTATGTGCGTGAATGA | 57.961 | 42.857 | 0.00 | 0.00 | 41.91 | 2.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.