Multiple sequence alignment - TraesCS2A01G164900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G164900 chr2A 100.000 2651 0 0 1 2651 117368924 117371574 0.000000e+00 4896.0
1 TraesCS2A01G164900 chr2A 82.278 79 13 1 45 123 689208948 689209025 1.700000e-07 67.6
2 TraesCS2A01G164900 chr2D 93.289 1669 85 16 1 1663 115935705 115937352 0.000000e+00 2436.0
3 TraesCS2A01G164900 chr2D 92.476 824 41 8 1674 2493 115937336 115938142 0.000000e+00 1158.0
4 TraesCS2A01G164900 chr2B 94.544 1063 58 0 601 1663 166429268 166430330 0.000000e+00 1642.0
5 TraesCS2A01G164900 chr2B 91.042 614 43 6 1798 2410 166430411 166431013 0.000000e+00 819.0
6 TraesCS2A01G164900 chr2B 92.440 291 17 4 261 550 166428985 166429271 6.830000e-111 411.0
7 TraesCS2A01G164900 chr2B 89.272 261 14 4 7 267 166426410 166426656 5.510000e-82 315.0
8 TraesCS2A01G164900 chr2B 95.575 113 5 0 1674 1786 166430314 166430426 5.830000e-42 182.0
9 TraesCS2A01G164900 chr1D 83.932 946 117 20 633 1550 439931091 439930153 0.000000e+00 872.0
10 TraesCS2A01G164900 chr1D 80.088 226 32 12 2268 2488 442369275 442369492 3.530000e-34 156.0
11 TraesCS2A01G164900 chr1D 100.000 32 0 0 2120 2151 27886041 27886072 2.850000e-05 60.2
12 TraesCS2A01G164900 chr6A 100.000 156 0 0 2496 2651 430990035 430989880 3.340000e-74 289.0
13 TraesCS2A01G164900 chr6A 100.000 155 0 0 2497 2651 430982100 430981946 1.200000e-73 287.0
14 TraesCS2A01G164900 chr1B 99.371 159 1 0 2493 2651 615104767 615104609 3.340000e-74 289.0
15 TraesCS2A01G164900 chr1B 99.367 158 1 0 2494 2651 411637628 411637785 1.200000e-73 287.0
16 TraesCS2A01G164900 chr4A 100.000 155 0 0 2497 2651 69284255 69284409 1.200000e-73 287.0
17 TraesCS2A01G164900 chr4A 100.000 155 0 0 2497 2651 69292090 69292244 1.200000e-73 287.0
18 TraesCS2A01G164900 chr4A 97.436 39 0 1 86 123 189667454 189667492 6.130000e-07 65.8
19 TraesCS2A01G164900 chr4A 96.875 32 1 0 2119 2150 25701129 25701160 1.000000e-03 54.7
20 TraesCS2A01G164900 chr7B 97.605 167 3 1 2486 2651 162594204 162594370 4.320000e-73 285.0
21 TraesCS2A01G164900 chr7B 82.143 196 23 10 2292 2484 80512940 80513126 9.820000e-35 158.0
22 TraesCS2A01G164900 chr7B 86.957 69 9 0 55 123 332174760 332174828 7.870000e-11 78.7
23 TraesCS2A01G164900 chr4B 98.758 161 1 1 2491 2651 78738620 78738461 4.320000e-73 285.0
24 TraesCS2A01G164900 chr4B 83.333 210 30 5 2292 2499 462239481 462239275 3.480000e-44 189.0
25 TraesCS2A01G164900 chr4B 82.432 74 8 3 52 123 373760333 373760403 2.850000e-05 60.2
26 TraesCS2A01G164900 chr3A 97.576 165 2 2 2488 2651 564083509 564083672 5.590000e-72 281.0
27 TraesCS2A01G164900 chr3D 82.653 196 26 4 2293 2487 532084292 532084480 1.630000e-37 167.0
28 TraesCS2A01G164900 chr3B 78.988 257 41 8 2237 2488 723524423 723524175 2.110000e-36 163.0
29 TraesCS2A01G164900 chr3B 77.528 267 47 12 2238 2499 635022807 635022549 5.910000e-32 148.0
30 TraesCS2A01G164900 chr3B 77.734 256 42 10 2244 2493 673299492 673299738 2.750000e-30 143.0
31 TraesCS2A01G164900 chr3B 97.297 37 1 0 89 125 672133277 672133313 2.200000e-06 63.9
32 TraesCS2A01G164900 chr3B 92.500 40 2 1 2117 2156 819292174 819292212 3.690000e-04 56.5
33 TraesCS2A01G164900 chr1A 79.167 120 22 3 7 124 524393156 524393038 2.190000e-11 80.5
34 TraesCS2A01G164900 chr5B 97.368 38 1 0 86 123 529533257 529533220 6.130000e-07 65.8
35 TraesCS2A01G164900 chr7A 97.222 36 0 1 2121 2156 66456604 66456570 2.850000e-05 60.2
36 TraesCS2A01G164900 chr7D 100.000 31 0 0 2121 2151 547402436 547402406 1.020000e-04 58.4
37 TraesCS2A01G164900 chr5A 100.000 29 0 0 2128 2156 121970255 121970283 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G164900 chr2A 117368924 117371574 2650 False 4896.0 4896 100.0000 1 2651 1 chr2A.!!$F1 2650
1 TraesCS2A01G164900 chr2D 115935705 115938142 2437 False 1797.0 2436 92.8825 1 2493 2 chr2D.!!$F1 2492
2 TraesCS2A01G164900 chr2B 166426410 166431013 4603 False 673.8 1642 92.5746 7 2410 5 chr2B.!!$F1 2403
3 TraesCS2A01G164900 chr1D 439930153 439931091 938 True 872.0 872 83.9320 633 1550 1 chr1D.!!$R1 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.591170 AAATGTGGTCCGCGTTGAAG 59.409 50.0 10.67 0.0 0.0 3.02 F
521 2866 0.690077 CAGTCCCACCTACCCTACCC 60.690 65.0 0.00 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 3837 0.311165 CGTCCAATAGGCGAGTCGAT 59.689 55.0 18.61 6.31 36.83 3.59 R
2467 4846 0.029567 CCTCCGATGACGCTAGACAC 59.970 60.0 0.00 0.00 38.29 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.159099 GCATGATGTAGAACACGGAGGA 60.159 50.000 0.00 0.00 0.00 3.71
150 151 7.118723 TCTAATGATAACTGTCCAATTTGCCT 58.881 34.615 0.00 0.00 0.00 4.75
191 192 0.591170 AAATGTGGTCCGCGTTGAAG 59.409 50.000 10.67 0.00 0.00 3.02
192 193 1.234615 AATGTGGTCCGCGTTGAAGG 61.235 55.000 9.15 0.00 0.00 3.46
193 194 3.723348 GTGGTCCGCGTTGAAGGC 61.723 66.667 4.92 0.00 0.00 4.35
194 195 3.936203 TGGTCCGCGTTGAAGGCT 61.936 61.111 4.92 0.00 0.00 4.58
195 196 2.668550 GGTCCGCGTTGAAGGCTT 60.669 61.111 4.92 0.00 0.00 4.35
196 197 2.556287 GTCCGCGTTGAAGGCTTG 59.444 61.111 3.46 0.00 0.00 4.01
197 198 1.959226 GTCCGCGTTGAAGGCTTGA 60.959 57.895 3.46 0.00 0.00 3.02
198 199 1.227704 TCCGCGTTGAAGGCTTGAA 60.228 52.632 3.46 0.00 0.00 2.69
291 2627 6.706270 CGATGTAGCCCAGTAACAAAGATAAT 59.294 38.462 0.00 0.00 0.00 1.28
297 2633 4.514066 CCCAGTAACAAAGATAATACGGCC 59.486 45.833 0.00 0.00 0.00 6.13
384 2728 4.083324 ACACTTGGTGCATGTTTCTTATCG 60.083 41.667 0.00 0.00 36.98 2.92
407 2751 0.883153 ACTGTATGTCACACCGCGTA 59.117 50.000 4.92 0.00 32.33 4.42
417 2761 2.034179 TCACACCGCGTATTCCATAGAG 59.966 50.000 4.92 0.00 0.00 2.43
423 2767 2.333014 GCGTATTCCATAGAGCAGCTC 58.667 52.381 15.25 15.25 0.00 4.09
450 2794 5.222130 TGGACTATTCTCCTTCTGCCTTTTT 60.222 40.000 0.00 0.00 0.00 1.94
492 2836 3.054802 ACAGCAGGGAAGGATAACAAGAG 60.055 47.826 0.00 0.00 0.00 2.85
521 2866 0.690077 CAGTCCCACCTACCCTACCC 60.690 65.000 0.00 0.00 0.00 3.69
526 2871 1.556238 CCCACCTACCCTACCCTCAAA 60.556 57.143 0.00 0.00 0.00 2.69
539 2884 7.944554 ACCCTACCCTCAAAATGTGAATATATG 59.055 37.037 0.00 0.00 35.22 1.78
582 2927 1.272490 TCAGACTAACAAGCGACTGGG 59.728 52.381 0.00 0.00 0.00 4.45
586 2931 1.067071 ACTAACAAGCGACTGGGTAGC 60.067 52.381 6.31 0.00 34.50 3.58
588 2933 2.125106 CAAGCGACTGGGTAGCCC 60.125 66.667 8.85 0.62 45.71 5.19
720 3074 3.626924 ACCGGCGTTGGAGCTTCT 61.627 61.111 6.01 0.00 37.29 2.85
912 3272 0.758310 TGGAGATCTCGCTGGAGCAT 60.758 55.000 16.46 0.00 42.21 3.79
946 3306 1.363744 GCTGAACAACATCTCCTCCG 58.636 55.000 0.00 0.00 0.00 4.63
1070 3430 3.485431 CGTGCTCGGCTGCAAGAG 61.485 66.667 16.63 16.63 45.12 2.85
1167 3527 3.865929 CTCGCTGCTGACCAACGGT 62.866 63.158 0.00 0.00 39.44 4.83
1240 3603 2.807631 CTACCGGGTGTGGTTCGACG 62.808 65.000 10.66 0.00 43.56 5.12
1496 3871 0.179124 GGACGAGGCTACTTCTGCAG 60.179 60.000 7.63 7.63 0.00 4.41
1558 3933 4.339814 ACGGATGCAAAGGTAACAAAAAGA 59.660 37.500 0.00 0.00 41.41 2.52
1577 3952 7.404671 AAAAGACTAACAACAATTCCACACT 57.595 32.000 0.00 0.00 0.00 3.55
1586 3961 5.180492 ACAACAATTCCACACTTACCATACG 59.820 40.000 0.00 0.00 0.00 3.06
1646 4021 9.851686 ATAACTTATTAATCCATCTGTTGCAGA 57.148 29.630 1.06 1.06 44.99 4.26
1647 4022 8.579850 AACTTATTAATCCATCTGTTGCAGAA 57.420 30.769 2.80 0.00 44.04 3.02
1648 4023 8.757982 ACTTATTAATCCATCTGTTGCAGAAT 57.242 30.769 2.80 0.00 44.04 2.40
1649 4024 9.851686 ACTTATTAATCCATCTGTTGCAGAATA 57.148 29.630 2.80 0.00 44.04 1.75
1655 4030 6.122850 TCCATCTGTTGCAGAATAAATTCG 57.877 37.500 2.80 0.00 44.04 3.34
1656 4031 5.066375 TCCATCTGTTGCAGAATAAATTCGG 59.934 40.000 2.80 0.00 44.04 4.30
1657 4032 5.163622 CCATCTGTTGCAGAATAAATTCGGT 60.164 40.000 2.80 0.00 44.04 4.69
1658 4033 5.957842 TCTGTTGCAGAATAAATTCGGTT 57.042 34.783 5.04 0.00 41.56 4.44
1659 4034 6.325919 TCTGTTGCAGAATAAATTCGGTTT 57.674 33.333 5.04 0.00 41.56 3.27
1660 4035 6.148948 TCTGTTGCAGAATAAATTCGGTTTG 58.851 36.000 5.04 0.00 41.56 2.93
1661 4036 5.837437 TGTTGCAGAATAAATTCGGTTTGT 58.163 33.333 5.04 0.00 41.56 2.83
1662 4037 6.276847 TGTTGCAGAATAAATTCGGTTTGTT 58.723 32.000 5.04 0.00 41.56 2.83
1663 4038 6.758886 TGTTGCAGAATAAATTCGGTTTGTTT 59.241 30.769 5.04 0.00 41.56 2.83
1664 4039 7.043059 TGTTGCAGAATAAATTCGGTTTGTTTC 60.043 33.333 5.04 0.00 41.56 2.78
1665 4040 6.744112 TGCAGAATAAATTCGGTTTGTTTCT 58.256 32.000 5.04 0.00 41.56 2.52
1666 4041 6.861055 TGCAGAATAAATTCGGTTTGTTTCTC 59.139 34.615 5.04 7.17 41.56 2.87
1667 4042 7.084486 GCAGAATAAATTCGGTTTGTTTCTCT 58.916 34.615 5.04 0.00 41.56 3.10
1668 4043 7.595130 GCAGAATAAATTCGGTTTGTTTCTCTT 59.405 33.333 5.04 0.00 41.56 2.85
1705 4080 6.196724 TCGGTTTGTTAAAGCAAAATACAACG 59.803 34.615 4.65 0.00 39.65 4.10
1842 4217 5.450826 GCCGTTTCTTTTACCTTTTCCAAGA 60.451 40.000 0.00 0.00 30.57 3.02
1843 4218 6.737622 GCCGTTTCTTTTACCTTTTCCAAGAT 60.738 38.462 0.00 0.00 30.57 2.40
1844 4219 7.207383 CCGTTTCTTTTACCTTTTCCAAGATT 58.793 34.615 0.00 0.00 30.57 2.40
1845 4220 7.709182 CCGTTTCTTTTACCTTTTCCAAGATTT 59.291 33.333 0.00 0.00 30.57 2.17
1846 4221 9.093970 CGTTTCTTTTACCTTTTCCAAGATTTT 57.906 29.630 0.00 0.00 30.57 1.82
1848 4223 9.607988 TTTCTTTTACCTTTTCCAAGATTTTCC 57.392 29.630 0.00 0.00 30.57 3.13
2117 4495 6.440328 AGGTGGCAGTAATACCAATTTTTCAT 59.560 34.615 0.00 0.00 37.79 2.57
2146 4524 3.600694 TTGCCCGTGCGTTGCAAT 61.601 55.556 0.59 0.00 41.47 3.56
2190 4568 7.014326 ACCAATCGTGTCTGTGATATGTAGTAT 59.986 37.037 0.00 0.00 0.00 2.12
2192 4570 6.937436 TCGTGTCTGTGATATGTAGTATGT 57.063 37.500 0.00 0.00 0.00 2.29
2193 4571 7.329588 TCGTGTCTGTGATATGTAGTATGTT 57.670 36.000 0.00 0.00 0.00 2.71
2219 4597 1.273606 CTTTCGCTTCTCCTCCTCACA 59.726 52.381 0.00 0.00 0.00 3.58
2220 4598 0.603569 TTCGCTTCTCCTCCTCACAC 59.396 55.000 0.00 0.00 0.00 3.82
2257 4635 2.539081 GGGTTTCCCTGCCTCCTGT 61.539 63.158 0.00 0.00 41.34 4.00
2287 4665 0.394192 CCGATCTGCCTTGCATCCTA 59.606 55.000 0.00 0.00 38.13 2.94
2385 4763 7.562088 TGTTATTTGGAGTTTGTCTAGGGTTTT 59.438 33.333 0.00 0.00 0.00 2.43
2396 4774 2.076863 CTAGGGTTTTTGTCCTGCTCG 58.923 52.381 0.00 0.00 34.75 5.03
2422 4800 2.346739 AGACGACGACGACTCCCT 59.653 61.111 15.32 0.25 39.90 4.20
2445 4823 4.423625 AAGATGGAATAAGGTTCTCCCG 57.576 45.455 0.00 0.00 38.74 5.14
2446 4824 2.104963 AGATGGAATAAGGTTCTCCCGC 59.895 50.000 0.00 0.00 38.74 6.13
2448 4826 0.837940 GGAATAAGGTTCTCCCGCCT 59.162 55.000 0.00 0.00 38.74 5.52
2449 4827 2.044758 GGAATAAGGTTCTCCCGCCTA 58.955 52.381 0.00 0.00 38.74 3.93
2450 4828 2.037381 GGAATAAGGTTCTCCCGCCTAG 59.963 54.545 0.00 0.00 38.74 3.02
2451 4829 1.049402 ATAAGGTTCTCCCGCCTAGC 58.951 55.000 0.00 0.00 38.74 3.42
2454 4832 3.081409 GTTCTCCCGCCTAGCCCA 61.081 66.667 0.00 0.00 0.00 5.36
2459 4838 3.164269 CCCGCCTAGCCCATGTCT 61.164 66.667 0.00 0.00 0.00 3.41
2467 4846 2.158900 CCTAGCCCATGTCTTAGTGGTG 60.159 54.545 0.00 0.00 33.55 4.17
2481 4860 1.202582 AGTGGTGTGTCTAGCGTCATC 59.797 52.381 0.00 0.00 0.00 2.92
2493 4872 1.940883 GCGTCATCGGAGGGTGTGTA 61.941 60.000 0.00 0.00 37.56 2.90
2494 4873 0.100682 CGTCATCGGAGGGTGTGTAG 59.899 60.000 0.00 0.00 0.00 2.74
2495 4874 1.471119 GTCATCGGAGGGTGTGTAGA 58.529 55.000 0.00 0.00 0.00 2.59
2496 4875 2.032620 GTCATCGGAGGGTGTGTAGAT 58.967 52.381 0.00 0.00 0.00 1.98
2497 4876 2.031870 TCATCGGAGGGTGTGTAGATG 58.968 52.381 0.00 0.00 37.43 2.90
2498 4877 1.757118 CATCGGAGGGTGTGTAGATGT 59.243 52.381 0.00 0.00 33.05 3.06
2499 4878 2.812836 TCGGAGGGTGTGTAGATGTA 57.187 50.000 0.00 0.00 0.00 2.29
2500 4879 3.090210 TCGGAGGGTGTGTAGATGTAA 57.910 47.619 0.00 0.00 0.00 2.41
2501 4880 2.756760 TCGGAGGGTGTGTAGATGTAAC 59.243 50.000 0.00 0.00 0.00 2.50
2502 4881 2.479049 CGGAGGGTGTGTAGATGTAACG 60.479 54.545 0.00 0.00 0.00 3.18
2503 4882 2.537401 GAGGGTGTGTAGATGTAACGC 58.463 52.381 0.00 0.00 0.00 4.84
2504 4883 1.206371 AGGGTGTGTAGATGTAACGCC 59.794 52.381 0.00 0.00 42.54 5.68
2505 4884 1.648504 GGTGTGTAGATGTAACGCCC 58.351 55.000 0.00 0.00 38.32 6.13
2506 4885 1.648504 GTGTGTAGATGTAACGCCCC 58.351 55.000 0.00 0.00 0.00 5.80
2507 4886 0.173935 TGTGTAGATGTAACGCCCCG 59.826 55.000 0.00 0.00 0.00 5.73
2508 4887 0.457035 GTGTAGATGTAACGCCCCGA 59.543 55.000 0.00 0.00 0.00 5.14
2509 4888 0.742505 TGTAGATGTAACGCCCCGAG 59.257 55.000 0.00 0.00 0.00 4.63
2510 4889 1.027357 GTAGATGTAACGCCCCGAGA 58.973 55.000 0.00 0.00 0.00 4.04
2511 4890 1.027357 TAGATGTAACGCCCCGAGAC 58.973 55.000 0.00 0.00 0.00 3.36
2512 4891 1.227176 GATGTAACGCCCCGAGACC 60.227 63.158 0.00 0.00 0.00 3.85
2513 4892 2.948840 GATGTAACGCCCCGAGACCG 62.949 65.000 0.00 0.00 0.00 4.79
2514 4893 3.443045 GTAACGCCCCGAGACCGA 61.443 66.667 0.00 0.00 38.22 4.69
2515 4894 3.443045 TAACGCCCCGAGACCGAC 61.443 66.667 0.00 0.00 38.22 4.79
2522 4901 4.180946 CCGAGACCGACGCTCCAG 62.181 72.222 0.00 0.00 38.22 3.86
2523 4902 3.432588 CGAGACCGACGCTCCAGT 61.433 66.667 0.00 0.00 38.22 4.00
2524 4903 2.104859 CGAGACCGACGCTCCAGTA 61.105 63.158 0.00 0.00 38.22 2.74
2525 4904 1.722677 GAGACCGACGCTCCAGTAG 59.277 63.158 0.00 0.00 0.00 2.57
2526 4905 0.743701 GAGACCGACGCTCCAGTAGA 60.744 60.000 0.00 0.00 0.00 2.59
2527 4906 1.025647 AGACCGACGCTCCAGTAGAC 61.026 60.000 0.00 0.00 0.00 2.59
2528 4907 1.002379 ACCGACGCTCCAGTAGACT 60.002 57.895 0.00 0.00 0.00 3.24
2529 4908 0.608582 ACCGACGCTCCAGTAGACTT 60.609 55.000 0.00 0.00 0.00 3.01
2530 4909 0.099082 CCGACGCTCCAGTAGACTTC 59.901 60.000 0.00 0.00 0.00 3.01
2531 4910 0.099082 CGACGCTCCAGTAGACTTCC 59.901 60.000 0.00 0.00 0.00 3.46
2532 4911 1.174783 GACGCTCCAGTAGACTTCCA 58.825 55.000 0.00 0.00 0.00 3.53
2533 4912 1.133407 GACGCTCCAGTAGACTTCCAG 59.867 57.143 0.00 0.00 0.00 3.86
2534 4913 0.179124 CGCTCCAGTAGACTTCCAGC 60.179 60.000 0.00 0.00 0.00 4.85
2535 4914 1.190643 GCTCCAGTAGACTTCCAGCT 58.809 55.000 0.00 0.00 0.00 4.24
2536 4915 2.379972 GCTCCAGTAGACTTCCAGCTA 58.620 52.381 0.00 0.00 0.00 3.32
2537 4916 2.962421 GCTCCAGTAGACTTCCAGCTAT 59.038 50.000 0.00 0.00 0.00 2.97
2538 4917 3.386402 GCTCCAGTAGACTTCCAGCTATT 59.614 47.826 0.00 0.00 0.00 1.73
2539 4918 4.500716 GCTCCAGTAGACTTCCAGCTATTC 60.501 50.000 0.00 0.00 0.00 1.75
2540 4919 3.961408 TCCAGTAGACTTCCAGCTATTCC 59.039 47.826 0.00 0.00 0.00 3.01
2541 4920 3.243569 CCAGTAGACTTCCAGCTATTCCG 60.244 52.174 0.00 0.00 0.00 4.30
2542 4921 3.632604 CAGTAGACTTCCAGCTATTCCGA 59.367 47.826 0.00 0.00 0.00 4.55
2543 4922 3.886505 AGTAGACTTCCAGCTATTCCGAG 59.113 47.826 0.00 0.00 0.00 4.63
2544 4923 2.741145 AGACTTCCAGCTATTCCGAGT 58.259 47.619 0.00 0.00 0.00 4.18
2545 4924 3.100671 AGACTTCCAGCTATTCCGAGTT 58.899 45.455 0.00 0.00 0.00 3.01
2546 4925 3.515901 AGACTTCCAGCTATTCCGAGTTT 59.484 43.478 0.00 0.00 0.00 2.66
2547 4926 3.863041 ACTTCCAGCTATTCCGAGTTTC 58.137 45.455 0.00 0.00 0.00 2.78
2548 4927 2.579207 TCCAGCTATTCCGAGTTTCG 57.421 50.000 0.00 0.00 40.07 3.46
2549 4928 1.822990 TCCAGCTATTCCGAGTTTCGT 59.177 47.619 0.00 0.00 38.40 3.85
2550 4929 2.159282 TCCAGCTATTCCGAGTTTCGTC 60.159 50.000 0.00 0.00 38.40 4.20
2551 4930 1.846782 CAGCTATTCCGAGTTTCGTCG 59.153 52.381 0.00 0.00 38.40 5.12
2552 4931 1.471684 AGCTATTCCGAGTTTCGTCGT 59.528 47.619 0.00 0.00 38.40 4.34
2553 4932 1.582502 GCTATTCCGAGTTTCGTCGTG 59.417 52.381 0.00 0.00 38.40 4.35
2554 4933 2.860062 CTATTCCGAGTTTCGTCGTGT 58.140 47.619 0.00 0.00 38.40 4.49
2555 4934 1.415374 ATTCCGAGTTTCGTCGTGTG 58.585 50.000 0.00 0.00 38.40 3.82
2556 4935 0.381445 TTCCGAGTTTCGTCGTGTGA 59.619 50.000 0.00 0.00 38.40 3.58
2557 4936 0.594602 TCCGAGTTTCGTCGTGTGAT 59.405 50.000 0.00 0.00 38.40 3.06
2558 4937 1.001048 TCCGAGTTTCGTCGTGTGATT 60.001 47.619 0.00 0.00 38.40 2.57
2559 4938 1.790623 CCGAGTTTCGTCGTGTGATTT 59.209 47.619 0.00 0.00 38.40 2.17
2560 4939 2.409752 CCGAGTTTCGTCGTGTGATTTG 60.410 50.000 0.00 0.00 38.40 2.32
2561 4940 2.217847 CGAGTTTCGTCGTGTGATTTGT 59.782 45.455 0.00 0.00 34.72 2.83
2562 4941 3.302221 CGAGTTTCGTCGTGTGATTTGTT 60.302 43.478 0.00 0.00 34.72 2.83
2563 4942 4.584394 GAGTTTCGTCGTGTGATTTGTTT 58.416 39.130 0.00 0.00 0.00 2.83
2564 4943 4.976987 AGTTTCGTCGTGTGATTTGTTTT 58.023 34.783 0.00 0.00 0.00 2.43
2565 4944 6.109320 AGTTTCGTCGTGTGATTTGTTTTA 57.891 33.333 0.00 0.00 0.00 1.52
2566 4945 6.721321 AGTTTCGTCGTGTGATTTGTTTTAT 58.279 32.000 0.00 0.00 0.00 1.40
2567 4946 7.190871 AGTTTCGTCGTGTGATTTGTTTTATT 58.809 30.769 0.00 0.00 0.00 1.40
2568 4947 7.698970 AGTTTCGTCGTGTGATTTGTTTTATTT 59.301 29.630 0.00 0.00 0.00 1.40
2569 4948 6.961358 TCGTCGTGTGATTTGTTTTATTTG 57.039 33.333 0.00 0.00 0.00 2.32
2570 4949 6.487960 TCGTCGTGTGATTTGTTTTATTTGT 58.512 32.000 0.00 0.00 0.00 2.83
2571 4950 6.967767 TCGTCGTGTGATTTGTTTTATTTGTT 59.032 30.769 0.00 0.00 0.00 2.83
2572 4951 7.044641 TCGTCGTGTGATTTGTTTTATTTGTTG 60.045 33.333 0.00 0.00 0.00 3.33
2573 4952 6.838806 GTCGTGTGATTTGTTTTATTTGTTGC 59.161 34.615 0.00 0.00 0.00 4.17
2574 4953 6.531594 TCGTGTGATTTGTTTTATTTGTTGCA 59.468 30.769 0.00 0.00 0.00 4.08
2575 4954 7.223582 TCGTGTGATTTGTTTTATTTGTTGCAT 59.776 29.630 0.00 0.00 0.00 3.96
2576 4955 7.850003 CGTGTGATTTGTTTTATTTGTTGCATT 59.150 29.630 0.00 0.00 0.00 3.56
2577 4956 9.157259 GTGTGATTTGTTTTATTTGTTGCATTC 57.843 29.630 0.00 0.00 0.00 2.67
2578 4957 8.886719 TGTGATTTGTTTTATTTGTTGCATTCA 58.113 25.926 0.00 0.00 0.00 2.57
2579 4958 9.881529 GTGATTTGTTTTATTTGTTGCATTCAT 57.118 25.926 0.00 0.00 0.00 2.57
2581 4960 9.545611 GATTTGTTTTATTTGTTGCATTCATCC 57.454 29.630 0.00 0.00 0.00 3.51
2582 4961 8.674263 TTTGTTTTATTTGTTGCATTCATCCT 57.326 26.923 0.00 0.00 0.00 3.24
2583 4962 8.674263 TTGTTTTATTTGTTGCATTCATCCTT 57.326 26.923 0.00 0.00 0.00 3.36
2584 4963 8.085720 TGTTTTATTTGTTGCATTCATCCTTG 57.914 30.769 0.00 0.00 0.00 3.61
2585 4964 6.724694 TTTATTTGTTGCATTCATCCTTGC 57.275 33.333 0.00 0.00 39.33 4.01
2586 4965 3.747854 TTTGTTGCATTCATCCTTGCA 57.252 38.095 0.00 0.00 46.51 4.08
2591 4970 3.726291 TGCATTCATCCTTGCATCATG 57.274 42.857 0.00 0.00 43.54 3.07
2592 4971 3.028130 TGCATTCATCCTTGCATCATGT 58.972 40.909 0.00 0.00 43.54 3.21
2593 4972 3.181480 TGCATTCATCCTTGCATCATGTG 60.181 43.478 0.00 0.00 43.54 3.21
2606 4985 3.716601 CATCATGTGCATTGCATCATGT 58.283 40.909 30.80 22.83 42.56 3.21
2607 4986 3.430333 TCATGTGCATTGCATCATGTC 57.570 42.857 30.80 16.14 42.56 3.06
2608 4987 2.755655 TCATGTGCATTGCATCATGTCA 59.244 40.909 30.80 19.79 42.56 3.58
2609 4988 3.383185 TCATGTGCATTGCATCATGTCAT 59.617 39.130 30.80 20.73 42.56 3.06
2610 4989 3.430333 TGTGCATTGCATCATGTCATC 57.570 42.857 15.49 0.00 41.91 2.92
2611 4990 2.755655 TGTGCATTGCATCATGTCATCA 59.244 40.909 15.49 1.60 41.91 3.07
2612 4991 3.383185 TGTGCATTGCATCATGTCATCAT 59.617 39.130 15.49 0.00 41.91 2.45
2613 4992 3.735746 GTGCATTGCATCATGTCATCATG 59.264 43.478 15.49 0.00 41.91 3.07
2614 4993 3.798548 TGCATTGCATCATGTCATCATGC 60.799 43.478 14.26 14.26 41.34 4.06
2615 4994 6.817434 TGCATTGCATCATGTCATCATGCC 62.817 45.833 17.82 4.29 41.34 4.40
2625 5004 6.699575 CATGTCATCATGCCATCATATCAT 57.300 37.500 0.00 0.00 43.66 2.45
2626 5005 7.100458 CATGTCATCATGCCATCATATCATT 57.900 36.000 0.00 0.00 43.66 2.57
2627 5006 8.220755 CATGTCATCATGCCATCATATCATTA 57.779 34.615 0.00 0.00 43.66 1.90
2628 5007 8.682710 CATGTCATCATGCCATCATATCATTAA 58.317 33.333 0.00 0.00 43.66 1.40
2629 5008 8.817092 TGTCATCATGCCATCATATCATTAAT 57.183 30.769 0.00 0.00 0.00 1.40
2630 5009 9.250246 TGTCATCATGCCATCATATCATTAATT 57.750 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.596600 ATGTTCGTCGACTGTTGCGT 60.597 50.000 14.70 0.00 0.00 5.24
133 134 3.237268 ACCAGGCAAATTGGACAGTTA 57.763 42.857 0.00 0.00 39.08 2.24
192 193 5.182001 CACCATGTTATATAGGGCTTCAAGC 59.818 44.000 0.00 0.00 41.46 4.01
193 194 6.533730 TCACCATGTTATATAGGGCTTCAAG 58.466 40.000 0.00 0.00 0.00 3.02
194 195 6.508030 TCACCATGTTATATAGGGCTTCAA 57.492 37.500 0.00 0.00 0.00 2.69
195 196 6.044287 ACATCACCATGTTATATAGGGCTTCA 59.956 38.462 0.00 0.00 40.66 3.02
196 197 6.476378 ACATCACCATGTTATATAGGGCTTC 58.524 40.000 0.00 0.00 40.66 3.86
197 198 6.454223 ACATCACCATGTTATATAGGGCTT 57.546 37.500 0.00 0.00 40.66 4.35
198 199 5.337571 CGACATCACCATGTTATATAGGGCT 60.338 44.000 0.00 0.00 43.79 5.19
259 260 1.153449 TGGGCTACATCGCGAAAGG 60.153 57.895 15.24 8.73 0.00 3.11
291 2627 9.886337 TTATATTCCATCTATAATAGGGCCGTA 57.114 33.333 7.78 7.78 0.00 4.02
321 2657 4.285003 AGTGTATTGGTGCTGTGGTAAGTA 59.715 41.667 0.00 0.00 0.00 2.24
339 2683 4.617253 ACATCCTAAACAGTGCAGTGTA 57.383 40.909 26.87 11.91 0.00 2.90
384 2728 2.534349 CGCGGTGTGACATACAGTATTC 59.466 50.000 0.00 0.00 40.69 1.75
407 2751 3.420300 CATGGAGCTGCTCTATGGAAT 57.580 47.619 34.97 12.98 42.92 3.01
417 2761 2.549778 GGAGAATAGTCCATGGAGCTGC 60.550 54.545 16.81 9.22 36.51 5.25
423 2767 3.495806 GGCAGAAGGAGAATAGTCCATGG 60.496 52.174 4.97 4.97 39.34 3.66
450 2794 5.049680 GCTGTTTCGTGTTTCCTATCAAGAA 60.050 40.000 0.00 0.00 32.35 2.52
451 2795 4.451096 GCTGTTTCGTGTTTCCTATCAAGA 59.549 41.667 0.00 0.00 0.00 3.02
492 2836 1.375326 GTGGGACTGGACTGGTTCC 59.625 63.158 0.00 0.00 46.13 3.62
504 2848 0.398239 GAGGGTAGGGTAGGTGGGAC 60.398 65.000 0.00 0.00 0.00 4.46
556 2901 6.237942 CCAGTCGCTTGTTAGTCTGAATAATG 60.238 42.308 0.56 0.00 0.00 1.90
582 2927 4.278669 TCTGATCTAGTGATTTCGGGCTAC 59.721 45.833 0.00 0.00 32.19 3.58
586 2931 5.007136 GCTTTTCTGATCTAGTGATTTCGGG 59.993 44.000 0.00 0.00 32.19 5.14
588 2933 6.703857 CAGCTTTTCTGATCTAGTGATTTCG 58.296 40.000 0.00 0.00 45.72 3.46
946 3306 2.380410 CGGTGGCGTTGTAGCAGTC 61.380 63.158 0.00 0.00 39.27 3.51
972 3332 1.450312 CGGGCTGTTGACCTCCATC 60.450 63.158 0.00 0.00 39.94 3.51
1131 3491 1.675641 GAGGTTGCCGTCCTTGCAT 60.676 57.895 0.00 0.00 38.76 3.96
1167 3527 3.154473 CCGATCCCCTCGCAGGAA 61.154 66.667 4.00 0.00 46.25 3.36
1206 3566 1.338890 GGTAGTTCTCCAGCCCCCTC 61.339 65.000 0.00 0.00 0.00 4.30
1281 3656 1.671379 GGTGAAGTTGGACGCCTCC 60.671 63.158 0.00 0.00 37.04 4.30
1462 3837 0.311165 CGTCCAATAGGCGAGTCGAT 59.689 55.000 18.61 6.31 36.83 3.59
1496 3871 2.755103 CCTTGGTACCCTTTCTTGCATC 59.245 50.000 10.07 0.00 0.00 3.91
1558 3933 6.123651 TGGTAAGTGTGGAATTGTTGTTAGT 58.876 36.000 0.00 0.00 0.00 2.24
1577 3952 3.433343 TGGAGACTTGGTCGTATGGTAA 58.567 45.455 0.00 0.00 37.67 2.85
1586 3961 6.231211 TGAATTAAAGACTGGAGACTTGGTC 58.769 40.000 0.00 0.00 30.99 4.02
1639 4014 6.763303 AACAAACCGAATTTATTCTGCAAC 57.237 33.333 0.00 0.00 34.69 4.17
1670 4045 8.202745 TGCTTTAACAAACCGAATTCATTTTT 57.797 26.923 6.22 0.00 0.00 1.94
1671 4046 7.778470 TGCTTTAACAAACCGAATTCATTTT 57.222 28.000 6.22 0.98 0.00 1.82
1672 4047 7.778470 TTGCTTTAACAAACCGAATTCATTT 57.222 28.000 6.22 2.68 0.00 2.32
1788 4163 9.823647 TCAACAAAATTACCATTTCTTGCTAAA 57.176 25.926 0.00 0.00 30.80 1.85
1796 4171 6.400940 CGGCATGTCAACAAAATTACCATTTC 60.401 38.462 0.00 0.00 30.80 2.17
1842 4217 8.897752 GCAATAGTGAGACTAATCTTGGAAAAT 58.102 33.333 0.00 0.00 33.89 1.82
1843 4218 7.882791 TGCAATAGTGAGACTAATCTTGGAAAA 59.117 33.333 0.00 0.00 33.89 2.29
1844 4219 7.334421 GTGCAATAGTGAGACTAATCTTGGAAA 59.666 37.037 0.00 0.00 33.89 3.13
1845 4220 6.818644 GTGCAATAGTGAGACTAATCTTGGAA 59.181 38.462 0.00 0.00 33.89 3.53
1846 4221 6.341316 GTGCAATAGTGAGACTAATCTTGGA 58.659 40.000 0.00 0.00 33.89 3.53
1847 4222 5.525378 GGTGCAATAGTGAGACTAATCTTGG 59.475 44.000 0.00 0.00 33.89 3.61
1848 4223 6.108687 TGGTGCAATAGTGAGACTAATCTTG 58.891 40.000 0.00 0.00 33.89 3.02
2059 4437 7.642194 TCGATGTTGTGTCAAATTTACTGTTTC 59.358 33.333 0.00 0.00 0.00 2.78
2117 4495 2.223971 GCACGGGCAATTAGCTAGTAGA 60.224 50.000 3.77 0.00 44.79 2.59
2146 4524 1.353022 GGTGTTGAACCTATGTCCCCA 59.647 52.381 0.00 0.00 46.55 4.96
2176 4554 7.924358 AGGGGTAAACATACTACATATCACA 57.076 36.000 0.00 0.00 0.00 3.58
2183 4561 4.223477 AGCGAAAGGGGTAAACATACTACA 59.777 41.667 0.00 0.00 0.00 2.74
2190 4568 2.551504 GGAGAAGCGAAAGGGGTAAACA 60.552 50.000 0.00 0.00 0.00 2.83
2192 4570 1.982958 AGGAGAAGCGAAAGGGGTAAA 59.017 47.619 0.00 0.00 0.00 2.01
2193 4571 1.553704 GAGGAGAAGCGAAAGGGGTAA 59.446 52.381 0.00 0.00 0.00 2.85
2219 4597 3.624777 CCTATTCATTGGGTGCTCTTGT 58.375 45.455 0.00 0.00 0.00 3.16
2220 4598 2.954318 CCCTATTCATTGGGTGCTCTTG 59.046 50.000 0.00 0.00 37.94 3.02
2281 4659 0.680061 GGCCCTAAGGTCGTAGGATG 59.320 60.000 10.77 0.00 43.06 3.51
2287 4665 1.306654 TCCATGGCCCTAAGGTCGT 60.307 57.895 6.96 0.00 42.57 4.34
2385 4763 0.241213 CGTCTTCTCGAGCAGGACAA 59.759 55.000 22.19 7.23 0.00 3.18
2396 4774 0.246834 CGTCGTCGTCTCGTCTTCTC 60.247 60.000 0.00 0.00 0.00 2.87
2410 4788 1.749634 CCATCTTTAGGGAGTCGTCGT 59.250 52.381 0.00 0.00 0.00 4.34
2422 4800 5.686650 GCGGGAGAACCTTATTCCATCTTTA 60.687 44.000 0.00 0.00 36.97 1.85
2445 4823 1.202698 CCACTAAGACATGGGCTAGGC 60.203 57.143 8.00 8.00 31.83 3.93
2446 4824 2.119495 ACCACTAAGACATGGGCTAGG 58.881 52.381 0.00 0.00 40.59 3.02
2448 4826 2.236146 CACACCACTAAGACATGGGCTA 59.764 50.000 0.00 0.00 40.59 3.93
2449 4827 1.003580 CACACCACTAAGACATGGGCT 59.996 52.381 0.00 0.00 40.59 5.19
2450 4828 1.271379 ACACACCACTAAGACATGGGC 60.271 52.381 0.00 0.00 40.59 5.36
2451 4829 2.303022 AGACACACCACTAAGACATGGG 59.697 50.000 0.00 0.00 40.59 4.00
2454 4832 3.119459 CGCTAGACACACCACTAAGACAT 60.119 47.826 0.00 0.00 0.00 3.06
2459 4838 2.232399 TGACGCTAGACACACCACTAA 58.768 47.619 0.00 0.00 0.00 2.24
2467 4846 0.029567 CCTCCGATGACGCTAGACAC 59.970 60.000 0.00 0.00 38.29 3.67
2481 4860 2.479049 CGTTACATCTACACACCCTCCG 60.479 54.545 0.00 0.00 0.00 4.63
2493 4872 1.673808 GGTCTCGGGGCGTTACATCT 61.674 60.000 0.00 0.00 0.00 2.90
2494 4873 1.227176 GGTCTCGGGGCGTTACATC 60.227 63.158 0.00 0.00 0.00 3.06
2495 4874 2.897972 GGTCTCGGGGCGTTACAT 59.102 61.111 0.00 0.00 0.00 2.29
2496 4875 3.751246 CGGTCTCGGGGCGTTACA 61.751 66.667 0.00 0.00 0.00 2.41
2497 4876 3.443045 TCGGTCTCGGGGCGTTAC 61.443 66.667 0.00 0.00 36.95 2.50
2498 4877 3.443045 GTCGGTCTCGGGGCGTTA 61.443 66.667 0.00 0.00 36.95 3.18
2505 4884 4.180946 CTGGAGCGTCGGTCTCGG 62.181 72.222 22.48 14.09 36.95 4.63
2506 4885 2.037913 CTACTGGAGCGTCGGTCTCG 62.038 65.000 22.48 15.80 37.82 4.04
2507 4886 0.743701 TCTACTGGAGCGTCGGTCTC 60.744 60.000 22.48 13.69 0.00 3.36
2508 4887 1.025647 GTCTACTGGAGCGTCGGTCT 61.026 60.000 22.48 7.11 0.00 3.85
2509 4888 1.025647 AGTCTACTGGAGCGTCGGTC 61.026 60.000 15.95 15.95 0.00 4.79
2510 4889 0.608582 AAGTCTACTGGAGCGTCGGT 60.609 55.000 0.00 0.00 0.00 4.69
2511 4890 0.099082 GAAGTCTACTGGAGCGTCGG 59.901 60.000 0.00 0.00 0.00 4.79
2512 4891 0.099082 GGAAGTCTACTGGAGCGTCG 59.901 60.000 0.00 0.00 0.00 5.12
2513 4892 1.133407 CTGGAAGTCTACTGGAGCGTC 59.867 57.143 0.00 0.00 0.00 5.19
2514 4893 1.178276 CTGGAAGTCTACTGGAGCGT 58.822 55.000 0.00 0.00 0.00 5.07
2515 4894 0.179124 GCTGGAAGTCTACTGGAGCG 60.179 60.000 0.00 0.00 35.30 5.03
2516 4895 1.190643 AGCTGGAAGTCTACTGGAGC 58.809 55.000 0.00 0.00 35.30 4.70
2517 4896 4.038642 GGAATAGCTGGAAGTCTACTGGAG 59.961 50.000 0.00 0.00 35.30 3.86
2518 4897 3.961408 GGAATAGCTGGAAGTCTACTGGA 59.039 47.826 0.00 0.00 35.30 3.86
2519 4898 3.243569 CGGAATAGCTGGAAGTCTACTGG 60.244 52.174 0.00 0.00 35.30 4.00
2520 4899 3.632604 TCGGAATAGCTGGAAGTCTACTG 59.367 47.826 0.00 0.00 35.30 2.74
2521 4900 3.886505 CTCGGAATAGCTGGAAGTCTACT 59.113 47.826 0.00 0.00 35.30 2.57
2522 4901 3.633065 ACTCGGAATAGCTGGAAGTCTAC 59.367 47.826 0.00 0.00 35.30 2.59
2523 4902 3.899726 ACTCGGAATAGCTGGAAGTCTA 58.100 45.455 0.00 0.00 35.30 2.59
2524 4903 2.741145 ACTCGGAATAGCTGGAAGTCT 58.259 47.619 0.00 0.00 35.30 3.24
2525 4904 3.528597 AACTCGGAATAGCTGGAAGTC 57.471 47.619 0.00 0.00 35.30 3.01
2526 4905 3.676324 CGAAACTCGGAATAGCTGGAAGT 60.676 47.826 0.00 0.00 36.00 3.01
2527 4906 2.860735 CGAAACTCGGAATAGCTGGAAG 59.139 50.000 0.00 0.00 36.00 3.46
2528 4907 2.232941 ACGAAACTCGGAATAGCTGGAA 59.767 45.455 0.00 0.00 45.59 3.53
2529 4908 1.822990 ACGAAACTCGGAATAGCTGGA 59.177 47.619 0.00 0.00 45.59 3.86
2530 4909 2.194271 GACGAAACTCGGAATAGCTGG 58.806 52.381 0.00 0.00 45.59 4.85
2531 4910 1.846782 CGACGAAACTCGGAATAGCTG 59.153 52.381 0.00 0.00 45.59 4.24
2532 4911 1.471684 ACGACGAAACTCGGAATAGCT 59.528 47.619 0.00 0.00 45.59 3.32
2533 4912 1.582502 CACGACGAAACTCGGAATAGC 59.417 52.381 0.00 0.00 45.59 2.97
2534 4913 2.592897 CACACGACGAAACTCGGAATAG 59.407 50.000 0.00 0.00 45.59 1.73
2535 4914 2.226200 TCACACGACGAAACTCGGAATA 59.774 45.455 0.00 0.00 45.59 1.75
2536 4915 1.001048 TCACACGACGAAACTCGGAAT 60.001 47.619 0.00 0.00 45.59 3.01
2537 4916 0.381445 TCACACGACGAAACTCGGAA 59.619 50.000 0.00 0.00 45.59 4.30
2538 4917 0.594602 ATCACACGACGAAACTCGGA 59.405 50.000 0.00 0.00 45.59 4.55
2539 4918 1.415374 AATCACACGACGAAACTCGG 58.585 50.000 0.00 0.00 45.59 4.63
2540 4919 2.217847 ACAAATCACACGACGAAACTCG 59.782 45.455 0.00 0.00 46.93 4.18
2541 4920 3.854286 ACAAATCACACGACGAAACTC 57.146 42.857 0.00 0.00 0.00 3.01
2542 4921 4.609691 AAACAAATCACACGACGAAACT 57.390 36.364 0.00 0.00 0.00 2.66
2543 4922 6.963017 ATAAAACAAATCACACGACGAAAC 57.037 33.333 0.00 0.00 0.00 2.78
2544 4923 7.485277 ACAAATAAAACAAATCACACGACGAAA 59.515 29.630 0.00 0.00 0.00 3.46
2545 4924 6.967767 ACAAATAAAACAAATCACACGACGAA 59.032 30.769 0.00 0.00 0.00 3.85
2546 4925 6.487960 ACAAATAAAACAAATCACACGACGA 58.512 32.000 0.00 0.00 0.00 4.20
2547 4926 6.726035 ACAAATAAAACAAATCACACGACG 57.274 33.333 0.00 0.00 0.00 5.12
2548 4927 6.838806 GCAACAAATAAAACAAATCACACGAC 59.161 34.615 0.00 0.00 0.00 4.34
2549 4928 6.531594 TGCAACAAATAAAACAAATCACACGA 59.468 30.769 0.00 0.00 0.00 4.35
2550 4929 6.700020 TGCAACAAATAAAACAAATCACACG 58.300 32.000 0.00 0.00 0.00 4.49
2551 4930 9.157259 GAATGCAACAAATAAAACAAATCACAC 57.843 29.630 0.00 0.00 0.00 3.82
2552 4931 8.886719 TGAATGCAACAAATAAAACAAATCACA 58.113 25.926 0.00 0.00 0.00 3.58
2553 4932 9.881529 ATGAATGCAACAAATAAAACAAATCAC 57.118 25.926 0.00 0.00 0.00 3.06
2555 4934 9.545611 GGATGAATGCAACAAATAAAACAAATC 57.454 29.630 0.00 0.00 0.00 2.17
2556 4935 9.287373 AGGATGAATGCAACAAATAAAACAAAT 57.713 25.926 0.00 0.00 0.00 2.32
2557 4936 8.674263 AGGATGAATGCAACAAATAAAACAAA 57.326 26.923 0.00 0.00 0.00 2.83
2558 4937 8.557864 CAAGGATGAATGCAACAAATAAAACAA 58.442 29.630 0.00 0.00 0.00 2.83
2559 4938 7.307870 GCAAGGATGAATGCAACAAATAAAACA 60.308 33.333 0.00 0.00 42.12 2.83
2560 4939 7.017055 GCAAGGATGAATGCAACAAATAAAAC 58.983 34.615 0.00 0.00 42.12 2.43
2561 4940 7.131498 GCAAGGATGAATGCAACAAATAAAA 57.869 32.000 0.00 0.00 42.12 1.52
2562 4941 6.724694 GCAAGGATGAATGCAACAAATAAA 57.275 33.333 0.00 0.00 42.12 1.40
2572 4951 3.381045 CACATGATGCAAGGATGAATGC 58.619 45.455 0.00 0.00 42.86 3.56
2585 4964 3.716601 ACATGATGCAATGCACATGATG 58.283 40.909 34.56 23.49 43.53 3.07
2586 4965 3.383185 TGACATGATGCAATGCACATGAT 59.617 39.130 34.56 25.35 43.53 2.45
2587 4966 2.755655 TGACATGATGCAATGCACATGA 59.244 40.909 34.56 21.86 43.53 3.07
2588 4967 3.157932 TGACATGATGCAATGCACATG 57.842 42.857 30.32 30.32 44.81 3.21
2589 4968 3.383185 TGATGACATGATGCAATGCACAT 59.617 39.130 11.23 13.29 43.04 3.21
2590 4969 2.755655 TGATGACATGATGCAATGCACA 59.244 40.909 11.23 11.44 43.04 4.57
2591 4970 3.430333 TGATGACATGATGCAATGCAC 57.570 42.857 11.23 5.43 43.04 4.57
2594 4973 4.561326 ATGGCATGATGACATGATGCAATG 60.561 41.667 31.93 11.07 46.11 2.82
2595 4974 3.578282 ATGGCATGATGACATGATGCAAT 59.422 39.130 31.93 26.49 46.11 3.56
2596 4975 2.962421 ATGGCATGATGACATGATGCAA 59.038 40.909 31.93 25.60 46.11 4.08
2597 4976 2.593026 ATGGCATGATGACATGATGCA 58.407 42.857 31.93 21.63 46.11 3.96
2604 4983 8.817092 ATTAATGATATGATGGCATGATGACA 57.183 30.769 2.18 2.18 41.29 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.