Multiple sequence alignment - TraesCS2A01G164300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G164300 chr2A 100.000 3243 0 0 1 3243 116451948 116455190 0.000000e+00 5989.0
1 TraesCS2A01G164300 chr2A 97.388 689 17 1 1 688 179282675 179281987 0.000000e+00 1171.0
2 TraesCS2A01G164300 chr2A 97.376 686 17 1 1 685 101855214 101855899 0.000000e+00 1166.0
3 TraesCS2A01G164300 chr2A 97.242 689 18 1 1 688 421218924 421218236 0.000000e+00 1166.0
4 TraesCS2A01G164300 chr2A 97.376 686 17 1 1 685 578390839 578391524 0.000000e+00 1166.0
5 TraesCS2A01G164300 chr2A 100.000 119 0 0 2876 2994 116454939 116455057 1.510000e-53 220.0
6 TraesCS2A01G164300 chr2A 86.420 162 21 1 2833 2994 459834884 459835044 3.330000e-40 176.0
7 TraesCS2A01G164300 chr2B 92.226 2161 109 28 689 2839 165522146 165524257 0.000000e+00 3005.0
8 TraesCS2A01G164300 chr2D 96.102 1257 40 5 945 2198 115104647 115105897 0.000000e+00 2041.0
9 TraesCS2A01G164300 chr2D 90.665 632 27 14 2230 2839 115105898 115106519 0.000000e+00 811.0
10 TraesCS2A01G164300 chr2D 90.040 251 24 1 2992 3242 16116147 16115898 1.120000e-84 324.0
11 TraesCS2A01G164300 chr2D 90.625 224 20 1 3010 3233 643846004 643845782 2.450000e-76 296.0
12 TraesCS2A01G164300 chr2D 94.194 155 8 1 689 843 115104459 115104612 5.410000e-58 235.0
13 TraesCS2A01G164300 chr2D 88.971 136 14 1 2835 2970 197912448 197912314 2.000000e-37 167.0
14 TraesCS2A01G164300 chr5A 97.376 686 17 1 1 685 68818109 68818794 0.000000e+00 1166.0
15 TraesCS2A01G164300 chr5A 97.376 686 17 1 1 685 111614944 111615629 0.000000e+00 1166.0
16 TraesCS2A01G164300 chr5A 97.242 689 18 1 1 688 524723592 524722904 0.000000e+00 1166.0
17 TraesCS2A01G164300 chr5A 91.498 247 17 3 2992 3237 524342042 524341799 1.440000e-88 337.0
18 TraesCS2A01G164300 chr5A 89.167 240 23 3 2992 3231 66002855 66003091 2.450000e-76 296.0
19 TraesCS2A01G164300 chr5A 88.525 244 26 2 2992 3235 66050874 66051115 8.800000e-76 294.0
20 TraesCS2A01G164300 chr5A 87.097 248 31 1 2992 3239 219682090 219681844 2.460000e-71 279.0
21 TraesCS2A01G164300 chr3D 97.097 689 19 1 1 688 496780055 496779367 0.000000e+00 1160.0
22 TraesCS2A01G164300 chr3D 87.500 248 28 3 2992 3239 475302544 475302300 1.900000e-72 283.0
23 TraesCS2A01G164300 chr3D 86.139 101 10 3 2838 2937 414772094 414772191 4.430000e-19 106.0
24 TraesCS2A01G164300 chr1A 97.085 686 19 1 1 685 477661044 477661729 0.000000e+00 1155.0
25 TraesCS2A01G164300 chrUn 89.919 248 23 2 2992 3239 70435121 70434876 5.220000e-83 318.0
26 TraesCS2A01G164300 chr4D 89.956 229 22 1 2995 3223 481161 481388 8.800000e-76 294.0
27 TraesCS2A01G164300 chr7A 89.552 67 6 1 2834 2900 40786659 40786724 2.070000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G164300 chr2A 116451948 116455190 3242 False 3104.5 5989 100.000000 1 3243 2 chr2A.!!$F4 3242
1 TraesCS2A01G164300 chr2A 179281987 179282675 688 True 1171.0 1171 97.388000 1 688 1 chr2A.!!$R1 687
2 TraesCS2A01G164300 chr2A 101855214 101855899 685 False 1166.0 1166 97.376000 1 685 1 chr2A.!!$F1 684
3 TraesCS2A01G164300 chr2A 421218236 421218924 688 True 1166.0 1166 97.242000 1 688 1 chr2A.!!$R2 687
4 TraesCS2A01G164300 chr2A 578390839 578391524 685 False 1166.0 1166 97.376000 1 685 1 chr2A.!!$F3 684
5 TraesCS2A01G164300 chr2B 165522146 165524257 2111 False 3005.0 3005 92.226000 689 2839 1 chr2B.!!$F1 2150
6 TraesCS2A01G164300 chr2D 115104459 115106519 2060 False 1029.0 2041 93.653667 689 2839 3 chr2D.!!$F1 2150
7 TraesCS2A01G164300 chr5A 68818109 68818794 685 False 1166.0 1166 97.376000 1 685 1 chr5A.!!$F3 684
8 TraesCS2A01G164300 chr5A 111614944 111615629 685 False 1166.0 1166 97.376000 1 685 1 chr5A.!!$F4 684
9 TraesCS2A01G164300 chr5A 524722904 524723592 688 True 1166.0 1166 97.242000 1 688 1 chr5A.!!$R3 687
10 TraesCS2A01G164300 chr3D 496779367 496780055 688 True 1160.0 1160 97.097000 1 688 1 chr3D.!!$R2 687
11 TraesCS2A01G164300 chr1A 477661044 477661729 685 False 1155.0 1155 97.085000 1 685 1 chr1A.!!$F1 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 975 0.884704 GCGTGCAGTTTGAGGAAGGA 60.885 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2914 2946 0.409876 AGAGCTAGGTCACCCTCACA 59.59 55.0 23.18 0.0 41.45 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.638627 TCCATCTCAACATACGCATCTCT 59.361 43.478 0.00 0.00 0.00 3.10
162 163 5.306394 GTCCTGTAGAACTTGCCTTTTAGT 58.694 41.667 0.00 0.00 0.00 2.24
281 282 1.203441 TCCTCCTGCAGCATTGACCT 61.203 55.000 8.66 0.00 0.00 3.85
357 358 5.283763 TCCTCCTCACACCTAGTAGTACTA 58.716 45.833 9.66 9.66 0.00 1.82
505 507 1.739466 CGCAAAGAGCATACACCATGT 59.261 47.619 0.00 0.00 46.13 3.21
513 515 6.430962 AGAGCATACACCATGTGATATCTT 57.569 37.500 3.98 0.00 36.96 2.40
525 527 9.331466 ACCATGTGATATCTTCTTGTATATCCT 57.669 33.333 3.98 0.00 35.22 3.24
540 542 2.698855 ATCCTTTGTGACCTCATCCG 57.301 50.000 0.00 0.00 0.00 4.18
593 595 2.090775 TGACCCCTGATGCAGTCCTATA 60.091 50.000 0.00 0.00 0.00 1.31
634 636 3.428870 GTGTCGACATCACTTGTTCGAAT 59.571 43.478 23.12 0.00 39.18 3.34
667 669 6.312918 ACAACATTATCGTACATGTCCTTGAC 59.687 38.462 0.00 0.00 32.21 3.18
685 687 5.471556 TTGACGAGGGTAATGTACTTTGA 57.528 39.130 4.33 0.00 0.00 2.69
726 728 9.371136 GATTTCTTTCACTGAAATAAAATCCCC 57.629 33.333 23.64 12.32 42.17 4.81
778 780 1.673033 CCTAGCCCGTGAGTTGACTTG 60.673 57.143 0.00 0.00 0.00 3.16
788 790 2.687935 TGAGTTGACTTGGTTTTGCTCC 59.312 45.455 0.00 0.00 0.00 4.70
789 791 2.687935 GAGTTGACTTGGTTTTGCTCCA 59.312 45.455 0.00 0.00 0.00 3.86
791 793 2.136298 TGACTTGGTTTTGCTCCACA 57.864 45.000 0.00 0.00 34.45 4.17
813 815 5.927115 ACAACAAGAAATTAGACGACCTCTC 59.073 40.000 0.00 0.00 0.00 3.20
831 833 5.128919 CCTCTCCAATCCGATCAGAATTTT 58.871 41.667 0.00 0.00 0.00 1.82
845 847 6.017400 TCAGAATTTTGCTTCAACCTGATC 57.983 37.500 0.00 0.00 0.00 2.92
848 850 3.896648 TTTTGCTTCAACCTGATCGAC 57.103 42.857 0.00 0.00 0.00 4.20
849 851 2.839486 TTGCTTCAACCTGATCGACT 57.161 45.000 0.00 0.00 0.00 4.18
850 852 3.953712 TTGCTTCAACCTGATCGACTA 57.046 42.857 0.00 0.00 0.00 2.59
854 856 4.160439 TGCTTCAACCTGATCGACTAATCT 59.840 41.667 0.00 0.00 0.00 2.40
856 858 5.918011 GCTTCAACCTGATCGACTAATCTAG 59.082 44.000 0.00 0.00 0.00 2.43
858 860 4.278669 TCAACCTGATCGACTAATCTAGGC 59.721 45.833 0.00 0.00 32.05 3.93
859 861 3.158676 ACCTGATCGACTAATCTAGGCC 58.841 50.000 0.00 0.00 32.05 5.19
900 902 2.297895 TGCGTCCCTGGCAGGTAAT 61.298 57.895 30.68 0.00 35.04 1.89
908 910 2.091665 CCCTGGCAGGTAATGAATTCCT 60.092 50.000 30.68 0.00 31.93 3.36
914 916 2.614057 CAGGTAATGAATTCCTCGTGCC 59.386 50.000 2.27 0.00 0.00 5.01
916 918 2.354821 GGTAATGAATTCCTCGTGCCAC 59.645 50.000 2.27 0.00 0.00 5.01
917 919 1.086696 AATGAATTCCTCGTGCCACG 58.913 50.000 11.80 11.80 44.19 4.94
920 922 4.778143 ATTCCTCGTGCCACGCCC 62.778 66.667 13.39 0.00 42.21 6.13
964 966 2.667318 CGTCATCGGCGTGCAGTTT 61.667 57.895 6.85 0.00 0.00 2.66
965 967 1.154413 GTCATCGGCGTGCAGTTTG 60.154 57.895 6.85 0.00 0.00 2.93
966 968 1.301322 TCATCGGCGTGCAGTTTGA 60.301 52.632 6.85 0.00 0.00 2.69
968 970 2.034879 ATCGGCGTGCAGTTTGAGG 61.035 57.895 6.85 0.00 0.00 3.86
969 971 2.449031 ATCGGCGTGCAGTTTGAGGA 62.449 55.000 6.85 0.00 0.00 3.71
970 972 2.250939 CGGCGTGCAGTTTGAGGAA 61.251 57.895 0.00 0.00 0.00 3.36
971 973 1.576421 GGCGTGCAGTTTGAGGAAG 59.424 57.895 0.00 0.00 0.00 3.46
973 975 0.884704 GCGTGCAGTTTGAGGAAGGA 60.885 55.000 0.00 0.00 0.00 3.36
974 976 1.813513 CGTGCAGTTTGAGGAAGGAT 58.186 50.000 0.00 0.00 0.00 3.24
975 977 1.734465 CGTGCAGTTTGAGGAAGGATC 59.266 52.381 0.00 0.00 0.00 3.36
976 978 2.087646 GTGCAGTTTGAGGAAGGATCC 58.912 52.381 2.48 2.48 46.98 3.36
1044 1046 0.325671 AAGCAGATCCGGGGAGAAGA 60.326 55.000 0.00 0.00 0.00 2.87
1308 1313 2.835895 GCGGAGGAGGAGGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
1975 1980 1.153549 CTACGGCTGGAGAAGGTGC 60.154 63.158 0.00 0.00 0.00 5.01
1976 1981 2.579684 CTACGGCTGGAGAAGGTGCC 62.580 65.000 0.00 0.00 41.76 5.01
2019 2024 6.668323 TGTAGTTTTCTAACATTGCTTGCTC 58.332 36.000 0.00 0.00 36.70 4.26
2028 2033 9.709495 TTCTAACATTGCTTGCTCAATTTATTT 57.291 25.926 0.00 0.00 34.68 1.40
2072 2077 6.925718 TGATGCTACTCTATGTATGTTTCAGC 59.074 38.462 0.00 0.00 0.00 4.26
2128 2133 1.174783 TGAGGTCTCTCACTAACGCC 58.825 55.000 0.00 0.00 44.39 5.68
2129 2134 1.174783 GAGGTCTCTCACTAACGCCA 58.825 55.000 0.00 0.00 39.74 5.69
2204 2209 2.612212 GGAGACGACAACAAAGAAGCAA 59.388 45.455 0.00 0.00 0.00 3.91
2212 2217 1.412079 ACAAAGAAGCAATGCCCACA 58.588 45.000 0.00 0.00 0.00 4.17
2316 2321 9.750783 TTCTTATATACTCCCTCTGTACCATAC 57.249 37.037 0.00 0.00 0.00 2.39
2317 2322 9.125255 TCTTATATACTCCCTCTGTACCATACT 57.875 37.037 0.00 0.00 0.00 2.12
2320 2325 6.783517 ATACTCCCTCTGTACCATACTACT 57.216 41.667 0.00 0.00 0.00 2.57
2321 2326 7.885209 ATACTCCCTCTGTACCATACTACTA 57.115 40.000 0.00 0.00 0.00 1.82
2322 2327 6.190346 ACTCCCTCTGTACCATACTACTAG 57.810 45.833 0.00 0.00 0.00 2.57
2388 2395 6.976925 CGAAATATATTATGGTACGGAGGGAC 59.023 42.308 0.00 0.00 0.00 4.46
2414 2421 1.859302 TGGAAAGCACCACACCTTTT 58.141 45.000 0.00 0.00 34.77 2.27
2415 2422 1.754226 TGGAAAGCACCACACCTTTTC 59.246 47.619 0.00 0.00 34.77 2.29
2416 2423 2.031870 GGAAAGCACCACACCTTTTCT 58.968 47.619 0.00 0.00 31.85 2.52
2417 2424 2.430694 GGAAAGCACCACACCTTTTCTT 59.569 45.455 0.00 0.00 31.85 2.52
2528 2538 7.434013 AGTTTATACAAGGTTTGCGAAAAGTTG 59.566 33.333 8.70 8.70 0.00 3.16
2630 2658 6.426980 TTGATGACATCAAGTAGCATTGTC 57.573 37.500 23.89 0.00 43.84 3.18
2674 2702 7.796197 GCAGAAAATTCTAGCATTATCTCGTTC 59.204 37.037 10.61 0.00 35.34 3.95
2700 2728 5.902613 TTCATCCAAGAAATGACCATGTC 57.097 39.130 0.00 0.00 33.01 3.06
2791 2822 0.593128 CTCCGCCAACCAAGAGTTTG 59.407 55.000 0.00 0.00 36.18 2.93
2839 2871 7.312415 ACTTGGTAAGTTCTAAAGCCTTAGA 57.688 36.000 0.40 0.40 41.47 2.10
2840 2872 7.387643 ACTTGGTAAGTTCTAAAGCCTTAGAG 58.612 38.462 5.00 0.00 43.45 2.43
2841 2873 5.731591 TGGTAAGTTCTAAAGCCTTAGAGC 58.268 41.667 10.13 10.13 43.45 4.09
2842 2874 5.247564 TGGTAAGTTCTAAAGCCTTAGAGCA 59.752 40.000 17.88 5.44 43.94 4.26
2843 2875 6.070194 TGGTAAGTTCTAAAGCCTTAGAGCAT 60.070 38.462 17.88 10.62 43.94 3.79
2844 2876 6.480651 GGTAAGTTCTAAAGCCTTAGAGCATC 59.519 42.308 17.88 9.32 43.94 3.91
2856 2888 2.002127 GAGCATCTTCAGCCGTTCG 58.998 57.895 0.00 0.00 0.00 3.95
2857 2889 1.424493 GAGCATCTTCAGCCGTTCGG 61.424 60.000 6.90 6.90 0.00 4.30
2876 2908 4.492604 CCTTCAGGGTGCCGAAAA 57.507 55.556 0.00 0.00 0.00 2.29
2877 2909 2.727103 CCTTCAGGGTGCCGAAAAA 58.273 52.632 0.00 0.00 0.00 1.94
2878 2910 0.598065 CCTTCAGGGTGCCGAAAAAG 59.402 55.000 0.00 0.00 0.00 2.27
2879 2911 1.604604 CTTCAGGGTGCCGAAAAAGA 58.395 50.000 0.00 0.00 0.00 2.52
2880 2912 1.537202 CTTCAGGGTGCCGAAAAAGAG 59.463 52.381 0.00 0.00 0.00 2.85
2881 2913 0.889186 TCAGGGTGCCGAAAAAGAGC 60.889 55.000 0.00 0.00 0.00 4.09
2882 2914 1.603739 AGGGTGCCGAAAAAGAGCC 60.604 57.895 0.00 0.00 0.00 4.70
2883 2915 2.636412 GGGTGCCGAAAAAGAGCCC 61.636 63.158 0.00 0.00 0.00 5.19
2884 2916 2.636412 GGTGCCGAAAAAGAGCCCC 61.636 63.158 0.00 0.00 0.00 5.80
2885 2917 2.282887 TGCCGAAAAAGAGCCCCC 60.283 61.111 0.00 0.00 0.00 5.40
2886 2918 2.035783 GCCGAAAAAGAGCCCCCT 59.964 61.111 0.00 0.00 0.00 4.79
2887 2919 2.343426 GCCGAAAAAGAGCCCCCTG 61.343 63.158 0.00 0.00 0.00 4.45
2888 2920 1.678970 CCGAAAAAGAGCCCCCTGG 60.679 63.158 0.00 0.00 0.00 4.45
2912 2944 2.107141 AGCCGGCGCTAGATTGAC 59.893 61.111 23.20 0.00 46.08 3.18
2913 2945 2.202878 GCCGGCGCTAGATTGACA 60.203 61.111 12.58 0.00 0.00 3.58
2914 2946 1.595382 GCCGGCGCTAGATTGACAT 60.595 57.895 12.58 0.00 0.00 3.06
2915 2947 1.835483 GCCGGCGCTAGATTGACATG 61.835 60.000 12.58 0.00 0.00 3.21
2916 2948 0.530650 CCGGCGCTAGATTGACATGT 60.531 55.000 7.64 0.00 0.00 3.21
2917 2949 0.578683 CGGCGCTAGATTGACATGTG 59.421 55.000 7.64 0.00 0.00 3.21
2918 2950 1.802508 CGGCGCTAGATTGACATGTGA 60.803 52.381 7.64 0.00 0.00 3.58
2919 2951 1.863454 GGCGCTAGATTGACATGTGAG 59.137 52.381 7.64 0.00 0.00 3.51
2920 2952 1.863454 GCGCTAGATTGACATGTGAGG 59.137 52.381 1.15 0.00 0.00 3.86
2921 2953 2.477825 CGCTAGATTGACATGTGAGGG 58.522 52.381 1.15 0.00 0.00 4.30
2922 2954 2.159043 CGCTAGATTGACATGTGAGGGT 60.159 50.000 1.15 0.00 0.00 4.34
2923 2955 3.201290 GCTAGATTGACATGTGAGGGTG 58.799 50.000 1.15 0.00 0.00 4.61
2924 2956 3.118629 GCTAGATTGACATGTGAGGGTGA 60.119 47.826 1.15 0.00 0.00 4.02
2925 2957 3.340814 AGATTGACATGTGAGGGTGAC 57.659 47.619 1.15 0.00 0.00 3.67
2939 2971 0.736053 GGTGACCTAGCTCTCAGTCG 59.264 60.000 0.00 0.00 31.75 4.18
2940 2972 1.455248 GTGACCTAGCTCTCAGTCGT 58.545 55.000 0.00 0.00 31.75 4.34
2941 2973 1.399089 GTGACCTAGCTCTCAGTCGTC 59.601 57.143 0.00 0.00 31.75 4.20
2942 2974 0.653636 GACCTAGCTCTCAGTCGTCG 59.346 60.000 0.00 0.00 0.00 5.12
2943 2975 0.745128 ACCTAGCTCTCAGTCGTCGG 60.745 60.000 0.00 0.00 0.00 4.79
2944 2976 1.353804 CTAGCTCTCAGTCGTCGGC 59.646 63.158 0.00 0.00 0.00 5.54
2945 2977 2.054140 CTAGCTCTCAGTCGTCGGCC 62.054 65.000 0.00 0.00 0.00 6.13
2946 2978 4.500116 GCTCTCAGTCGTCGGCCC 62.500 72.222 0.00 0.00 0.00 5.80
2947 2979 3.062466 CTCTCAGTCGTCGGCCCA 61.062 66.667 0.00 0.00 0.00 5.36
2948 2980 2.599281 TCTCAGTCGTCGGCCCAA 60.599 61.111 0.00 0.00 0.00 4.12
2949 2981 2.432628 CTCAGTCGTCGGCCCAAC 60.433 66.667 0.00 0.00 0.00 3.77
2950 2982 4.351938 TCAGTCGTCGGCCCAACG 62.352 66.667 17.05 17.05 41.39 4.10
2972 3004 4.082523 CCCCGGATGCGGCGATAT 62.083 66.667 21.75 3.40 0.00 1.63
2973 3005 2.047274 CCCGGATGCGGCGATATT 60.047 61.111 21.75 0.00 0.00 1.28
2974 3006 1.216977 CCCGGATGCGGCGATATTA 59.783 57.895 21.75 0.00 0.00 0.98
2975 3007 0.179084 CCCGGATGCGGCGATATTAT 60.179 55.000 21.75 0.00 0.00 1.28
2976 3008 0.930310 CCGGATGCGGCGATATTATG 59.070 55.000 14.38 0.00 0.00 1.90
2977 3009 1.640428 CGGATGCGGCGATATTATGT 58.360 50.000 12.98 0.00 0.00 2.29
2978 3010 2.480587 CCGGATGCGGCGATATTATGTA 60.481 50.000 14.38 0.00 0.00 2.29
2979 3011 2.534349 CGGATGCGGCGATATTATGTAC 59.466 50.000 12.98 0.00 0.00 2.90
2980 3012 3.517602 GGATGCGGCGATATTATGTACA 58.482 45.455 12.98 0.00 0.00 2.90
2981 3013 3.930229 GGATGCGGCGATATTATGTACAA 59.070 43.478 12.98 0.00 0.00 2.41
2982 3014 4.390603 GGATGCGGCGATATTATGTACAAA 59.609 41.667 12.98 0.00 0.00 2.83
2983 3015 5.106869 GGATGCGGCGATATTATGTACAAAA 60.107 40.000 12.98 0.00 0.00 2.44
2984 3016 5.736486 TGCGGCGATATTATGTACAAAAA 57.264 34.783 12.98 0.00 0.00 1.94
2985 3017 6.307031 TGCGGCGATATTATGTACAAAAAT 57.693 33.333 12.98 5.86 0.00 1.82
2986 3018 6.730175 TGCGGCGATATTATGTACAAAAATT 58.270 32.000 12.98 0.00 0.00 1.82
2987 3019 7.862648 TGCGGCGATATTATGTACAAAAATTA 58.137 30.769 12.98 0.00 0.00 1.40
2988 3020 8.508062 TGCGGCGATATTATGTACAAAAATTAT 58.492 29.630 12.98 0.00 0.00 1.28
2989 3021 8.785101 GCGGCGATATTATGTACAAAAATTATG 58.215 33.333 12.98 0.00 0.00 1.90
2990 3022 9.820229 CGGCGATATTATGTACAAAAATTATGT 57.180 29.630 0.00 2.75 34.81 2.29
3000 3032 7.832769 TGTACAAAAATTATGTAAAGAGCCCC 58.167 34.615 0.00 0.00 35.21 5.80
3001 3033 6.294361 ACAAAAATTATGTAAAGAGCCCCC 57.706 37.500 0.00 0.00 0.00 5.40
3002 3034 6.022958 ACAAAAATTATGTAAAGAGCCCCCT 58.977 36.000 0.00 0.00 0.00 4.79
3003 3035 6.070824 ACAAAAATTATGTAAAGAGCCCCCTG 60.071 38.462 0.00 0.00 0.00 4.45
3004 3036 3.884037 ATTATGTAAAGAGCCCCCTGG 57.116 47.619 0.00 0.00 0.00 4.45
3028 3060 2.107141 AGCCGGCGCTAGATTGAC 59.893 61.111 23.20 0.00 46.08 3.18
3029 3061 2.202878 GCCGGCGCTAGATTGACA 60.203 61.111 12.58 0.00 0.00 3.58
3030 3062 1.595382 GCCGGCGCTAGATTGACAT 60.595 57.895 12.58 0.00 0.00 3.06
3031 3063 1.835483 GCCGGCGCTAGATTGACATG 61.835 60.000 12.58 0.00 0.00 3.21
3032 3064 0.530650 CCGGCGCTAGATTGACATGT 60.531 55.000 7.64 0.00 0.00 3.21
3033 3065 0.578683 CGGCGCTAGATTGACATGTG 59.421 55.000 7.64 0.00 0.00 3.21
3034 3066 1.802508 CGGCGCTAGATTGACATGTGA 60.803 52.381 7.64 0.00 0.00 3.58
3035 3067 1.863454 GGCGCTAGATTGACATGTGAG 59.137 52.381 7.64 0.00 0.00 3.51
3036 3068 1.863454 GCGCTAGATTGACATGTGAGG 59.137 52.381 1.15 0.00 0.00 3.86
3037 3069 2.477825 CGCTAGATTGACATGTGAGGG 58.522 52.381 1.15 0.00 0.00 4.30
3038 3070 2.159043 CGCTAGATTGACATGTGAGGGT 60.159 50.000 1.15 0.00 0.00 4.34
3039 3071 3.201290 GCTAGATTGACATGTGAGGGTG 58.799 50.000 1.15 0.00 0.00 4.61
3040 3072 3.118629 GCTAGATTGACATGTGAGGGTGA 60.119 47.826 1.15 0.00 0.00 4.02
3041 3073 3.340814 AGATTGACATGTGAGGGTGAC 57.659 47.619 1.15 0.00 0.00 3.67
3055 3087 0.736053 GGTGACCTAGCTCTCAGTCG 59.264 60.000 0.00 0.00 31.75 4.18
3056 3088 1.455248 GTGACCTAGCTCTCAGTCGT 58.545 55.000 0.00 0.00 31.75 4.34
3057 3089 1.399089 GTGACCTAGCTCTCAGTCGTC 59.601 57.143 0.00 0.00 31.75 4.20
3058 3090 0.653636 GACCTAGCTCTCAGTCGTCG 59.346 60.000 0.00 0.00 0.00 5.12
3059 3091 0.745128 ACCTAGCTCTCAGTCGTCGG 60.745 60.000 0.00 0.00 0.00 4.79
3060 3092 1.353804 CTAGCTCTCAGTCGTCGGC 59.646 63.158 0.00 0.00 0.00 5.54
3061 3093 2.054140 CTAGCTCTCAGTCGTCGGCC 62.054 65.000 0.00 0.00 0.00 6.13
3062 3094 4.500116 GCTCTCAGTCGTCGGCCC 62.500 72.222 0.00 0.00 0.00 5.80
3063 3095 3.062466 CTCTCAGTCGTCGGCCCA 61.062 66.667 0.00 0.00 0.00 5.36
3064 3096 2.599281 TCTCAGTCGTCGGCCCAA 60.599 61.111 0.00 0.00 0.00 4.12
3065 3097 2.432628 CTCAGTCGTCGGCCCAAC 60.433 66.667 0.00 0.00 0.00 3.77
3066 3098 4.351938 TCAGTCGTCGGCCCAACG 62.352 66.667 17.05 17.05 41.39 4.10
3088 3120 4.082523 CCCCGGATGCGGCGATAT 62.083 66.667 21.75 3.40 0.00 1.63
3089 3121 2.047274 CCCGGATGCGGCGATATT 60.047 61.111 21.75 0.00 0.00 1.28
3090 3122 1.216977 CCCGGATGCGGCGATATTA 59.783 57.895 21.75 0.00 0.00 0.98
3091 3123 0.179084 CCCGGATGCGGCGATATTAT 60.179 55.000 21.75 0.00 0.00 1.28
3092 3124 0.930310 CCGGATGCGGCGATATTATG 59.070 55.000 14.38 0.00 0.00 1.90
3093 3125 1.640428 CGGATGCGGCGATATTATGT 58.360 50.000 12.98 0.00 0.00 2.29
3094 3126 2.480587 CCGGATGCGGCGATATTATGTA 60.481 50.000 14.38 0.00 0.00 2.29
3095 3127 2.534349 CGGATGCGGCGATATTATGTAC 59.466 50.000 12.98 0.00 0.00 2.90
3096 3128 3.517602 GGATGCGGCGATATTATGTACA 58.482 45.455 12.98 0.00 0.00 2.90
3097 3129 3.930229 GGATGCGGCGATATTATGTACAA 59.070 43.478 12.98 0.00 0.00 2.41
3098 3130 4.390603 GGATGCGGCGATATTATGTACAAA 59.609 41.667 12.98 0.00 0.00 2.83
3099 3131 5.106869 GGATGCGGCGATATTATGTACAAAA 60.107 40.000 12.98 0.00 0.00 2.44
3100 3132 5.736486 TGCGGCGATATTATGTACAAAAA 57.264 34.783 12.98 0.00 0.00 1.94
3101 3133 6.307031 TGCGGCGATATTATGTACAAAAAT 57.693 33.333 12.98 5.86 0.00 1.82
3102 3134 6.730175 TGCGGCGATATTATGTACAAAAATT 58.270 32.000 12.98 0.00 0.00 1.82
3103 3135 7.862648 TGCGGCGATATTATGTACAAAAATTA 58.137 30.769 12.98 0.00 0.00 1.40
3104 3136 8.508062 TGCGGCGATATTATGTACAAAAATTAT 58.492 29.630 12.98 0.00 0.00 1.28
3105 3137 8.785101 GCGGCGATATTATGTACAAAAATTATG 58.215 33.333 12.98 0.00 0.00 1.90
3106 3138 9.820229 CGGCGATATTATGTACAAAAATTATGT 57.180 29.630 0.00 2.75 34.81 2.29
3116 3148 8.508800 TGTACAAAAATTATGTAAACTTGGCG 57.491 30.769 0.00 0.00 35.21 5.69
3117 3149 8.350722 TGTACAAAAATTATGTAAACTTGGCGA 58.649 29.630 0.00 0.00 35.21 5.54
3118 3150 7.631915 ACAAAAATTATGTAAACTTGGCGAC 57.368 32.000 0.00 0.00 0.00 5.19
3119 3151 7.203910 ACAAAAATTATGTAAACTTGGCGACA 58.796 30.769 0.00 0.00 39.83 4.35
3120 3152 7.870445 ACAAAAATTATGTAAACTTGGCGACAT 59.130 29.630 0.00 0.00 42.32 3.06
3121 3153 8.707839 CAAAAATTATGTAAACTTGGCGACATT 58.292 29.630 0.00 0.00 42.32 2.71
3122 3154 8.825667 AAAATTATGTAAACTTGGCGACATTT 57.174 26.923 0.00 0.00 42.32 2.32
3123 3155 7.810766 AATTATGTAAACTTGGCGACATTTG 57.189 32.000 0.00 0.00 42.32 2.32
3124 3156 3.006659 TGTAAACTTGGCGACATTTGC 57.993 42.857 0.00 0.00 42.32 3.68
3125 3157 2.359214 TGTAAACTTGGCGACATTTGCA 59.641 40.909 4.26 4.26 42.32 4.08
3126 3158 1.851658 AAACTTGGCGACATTTGCAC 58.148 45.000 0.00 0.00 42.32 4.57
3127 3159 0.317770 AACTTGGCGACATTTGCACG 60.318 50.000 0.00 0.00 42.32 5.34
3128 3160 1.163420 ACTTGGCGACATTTGCACGA 61.163 50.000 0.00 0.00 42.32 4.35
3129 3161 0.040514 CTTGGCGACATTTGCACGAA 60.041 50.000 0.00 0.00 42.32 3.85
3130 3162 0.317436 TTGGCGACATTTGCACGAAC 60.317 50.000 0.00 0.00 42.32 3.95
3131 3163 1.163420 TGGCGACATTTGCACGAACT 61.163 50.000 0.00 0.00 33.40 3.01
3132 3164 0.452784 GGCGACATTTGCACGAACTC 60.453 55.000 0.00 0.00 0.00 3.01
3133 3165 0.785708 GCGACATTTGCACGAACTCG 60.786 55.000 0.00 0.00 46.33 4.18
3134 3166 0.179250 CGACATTTGCACGAACTCGG 60.179 55.000 3.88 0.00 44.95 4.63
3135 3167 0.452784 GACATTTGCACGAACTCGGC 60.453 55.000 3.88 5.04 44.95 5.54
3136 3168 1.509787 CATTTGCACGAACTCGGCG 60.510 57.895 0.00 0.00 44.95 6.46
3137 3169 1.666553 ATTTGCACGAACTCGGCGA 60.667 52.632 10.14 10.14 44.95 5.54
3138 3170 1.225376 ATTTGCACGAACTCGGCGAA 61.225 50.000 12.13 13.83 44.95 4.70
3139 3171 1.429927 TTTGCACGAACTCGGCGAAA 61.430 50.000 12.13 0.00 44.95 3.46
3140 3172 2.096481 TTGCACGAACTCGGCGAAAC 62.096 55.000 12.13 4.31 44.95 2.78
3141 3173 2.308039 GCACGAACTCGGCGAAACT 61.308 57.895 12.13 0.00 44.95 2.66
3142 3174 1.828331 GCACGAACTCGGCGAAACTT 61.828 55.000 12.13 2.12 44.95 2.66
3143 3175 0.161024 CACGAACTCGGCGAAACTTC 59.839 55.000 12.13 10.89 44.95 3.01
3144 3176 0.249155 ACGAACTCGGCGAAACTTCA 60.249 50.000 12.13 0.00 44.95 3.02
3145 3177 1.068474 CGAACTCGGCGAAACTTCAT 58.932 50.000 12.13 0.00 35.37 2.57
3146 3178 1.459592 CGAACTCGGCGAAACTTCATT 59.540 47.619 12.13 0.00 35.37 2.57
3147 3179 2.472397 CGAACTCGGCGAAACTTCATTC 60.472 50.000 12.13 5.57 35.37 2.67
3148 3180 2.163818 ACTCGGCGAAACTTCATTCA 57.836 45.000 12.13 0.00 0.00 2.57
3149 3181 2.489971 ACTCGGCGAAACTTCATTCAA 58.510 42.857 12.13 0.00 0.00 2.69
3150 3182 2.875933 ACTCGGCGAAACTTCATTCAAA 59.124 40.909 12.13 0.00 0.00 2.69
3151 3183 3.502211 ACTCGGCGAAACTTCATTCAAAT 59.498 39.130 12.13 0.00 0.00 2.32
3152 3184 4.023193 ACTCGGCGAAACTTCATTCAAATT 60.023 37.500 12.13 0.00 0.00 1.82
3153 3185 4.865776 TCGGCGAAACTTCATTCAAATTT 58.134 34.783 7.35 0.00 0.00 1.82
3154 3186 4.679197 TCGGCGAAACTTCATTCAAATTTG 59.321 37.500 7.35 12.15 0.00 2.32
3155 3187 4.444056 CGGCGAAACTTCATTCAAATTTGT 59.556 37.500 17.47 0.00 0.00 2.83
3156 3188 5.627367 CGGCGAAACTTCATTCAAATTTGTA 59.373 36.000 17.47 9.01 0.00 2.41
3157 3189 6.398517 CGGCGAAACTTCATTCAAATTTGTAC 60.399 38.462 17.47 0.00 0.00 2.90
3158 3190 6.419413 GGCGAAACTTCATTCAAATTTGTACA 59.581 34.615 17.47 0.00 0.00 2.90
3159 3191 7.116233 GGCGAAACTTCATTCAAATTTGTACAT 59.884 33.333 17.47 6.31 0.00 2.29
3160 3192 9.123709 GCGAAACTTCATTCAAATTTGTACATA 57.876 29.630 17.47 0.00 0.00 2.29
3177 3209 8.877808 TTGTACATAAAACATGAAAACATGCA 57.122 26.923 0.00 0.00 36.08 3.96
3178 3210 8.877808 TGTACATAAAACATGAAAACATGCAA 57.122 26.923 0.00 0.00 36.08 4.08
3179 3211 9.317936 TGTACATAAAACATGAAAACATGCAAA 57.682 25.926 0.00 0.00 36.08 3.68
3180 3212 9.579610 GTACATAAAACATGAAAACATGCAAAC 57.420 29.630 0.00 0.00 36.08 2.93
3181 3213 8.436046 ACATAAAACATGAAAACATGCAAACT 57.564 26.923 0.00 0.00 36.08 2.66
3182 3214 9.539825 ACATAAAACATGAAAACATGCAAACTA 57.460 25.926 0.00 0.00 36.08 2.24
3183 3215 9.796062 CATAAAACATGAAAACATGCAAACTAC 57.204 29.630 0.00 0.00 36.08 2.73
3184 3216 6.509317 AAACATGAAAACATGCAAACTACG 57.491 33.333 0.00 0.00 36.08 3.51
3185 3217 5.431420 ACATGAAAACATGCAAACTACGA 57.569 34.783 0.00 0.00 36.08 3.43
3186 3218 5.212194 ACATGAAAACATGCAAACTACGAC 58.788 37.500 0.00 0.00 36.08 4.34
3187 3219 5.008613 ACATGAAAACATGCAAACTACGACT 59.991 36.000 0.00 0.00 36.08 4.18
3188 3220 4.843147 TGAAAACATGCAAACTACGACTG 58.157 39.130 0.00 0.00 0.00 3.51
3189 3221 4.572795 TGAAAACATGCAAACTACGACTGA 59.427 37.500 0.00 0.00 0.00 3.41
3190 3222 5.065346 TGAAAACATGCAAACTACGACTGAA 59.935 36.000 0.00 0.00 0.00 3.02
3191 3223 4.468095 AACATGCAAACTACGACTGAAC 57.532 40.909 0.00 0.00 0.00 3.18
3192 3224 3.728845 ACATGCAAACTACGACTGAACT 58.271 40.909 0.00 0.00 0.00 3.01
3193 3225 4.878439 ACATGCAAACTACGACTGAACTA 58.122 39.130 0.00 0.00 0.00 2.24
3194 3226 4.684703 ACATGCAAACTACGACTGAACTAC 59.315 41.667 0.00 0.00 0.00 2.73
3195 3227 3.302555 TGCAAACTACGACTGAACTACG 58.697 45.455 0.00 0.00 0.00 3.51
3196 3228 2.090195 GCAAACTACGACTGAACTACGC 59.910 50.000 0.00 0.00 0.00 4.42
3197 3229 3.302555 CAAACTACGACTGAACTACGCA 58.697 45.455 0.00 0.00 0.00 5.24
3198 3230 3.844577 AACTACGACTGAACTACGCAT 57.155 42.857 0.00 0.00 0.00 4.73
3199 3231 4.952262 AACTACGACTGAACTACGCATA 57.048 40.909 0.00 0.00 0.00 3.14
3200 3232 4.952262 ACTACGACTGAACTACGCATAA 57.048 40.909 0.00 0.00 0.00 1.90
3201 3233 5.300969 ACTACGACTGAACTACGCATAAA 57.699 39.130 0.00 0.00 0.00 1.40
3202 3234 5.091431 ACTACGACTGAACTACGCATAAAC 58.909 41.667 0.00 0.00 0.00 2.01
3203 3235 4.170292 ACGACTGAACTACGCATAAACT 57.830 40.909 0.00 0.00 0.00 2.66
3204 3236 5.300969 ACGACTGAACTACGCATAAACTA 57.699 39.130 0.00 0.00 0.00 2.24
3205 3237 5.091431 ACGACTGAACTACGCATAAACTAC 58.909 41.667 0.00 0.00 0.00 2.73
3206 3238 4.201758 CGACTGAACTACGCATAAACTACG 59.798 45.833 0.00 0.00 0.00 3.51
3207 3239 3.855950 ACTGAACTACGCATAAACTACGC 59.144 43.478 0.00 0.00 0.00 4.42
3208 3240 3.181397 TGAACTACGCATAAACTACGCC 58.819 45.455 0.00 0.00 0.00 5.68
3209 3241 3.119388 TGAACTACGCATAAACTACGCCT 60.119 43.478 0.00 0.00 0.00 5.52
3210 3242 4.096231 TGAACTACGCATAAACTACGCCTA 59.904 41.667 0.00 0.00 0.00 3.93
3211 3243 4.220533 ACTACGCATAAACTACGCCTAG 57.779 45.455 0.00 0.00 0.00 3.02
3212 3244 1.849097 ACGCATAAACTACGCCTAGC 58.151 50.000 0.00 0.00 0.00 3.42
3213 3245 1.137513 CGCATAAACTACGCCTAGCC 58.862 55.000 0.00 0.00 0.00 3.93
3214 3246 1.537348 CGCATAAACTACGCCTAGCCA 60.537 52.381 0.00 0.00 0.00 4.75
3215 3247 1.865340 GCATAAACTACGCCTAGCCAC 59.135 52.381 0.00 0.00 0.00 5.01
3216 3248 2.480845 CATAAACTACGCCTAGCCACC 58.519 52.381 0.00 0.00 0.00 4.61
3217 3249 1.559368 TAAACTACGCCTAGCCACCA 58.441 50.000 0.00 0.00 0.00 4.17
3218 3250 0.036671 AAACTACGCCTAGCCACCAC 60.037 55.000 0.00 0.00 0.00 4.16
3219 3251 1.896122 AACTACGCCTAGCCACCACC 61.896 60.000 0.00 0.00 0.00 4.61
3220 3252 3.426117 CTACGCCTAGCCACCACCG 62.426 68.421 0.00 0.00 0.00 4.94
3222 3254 4.814294 CGCCTAGCCACCACCGTC 62.814 72.222 0.00 0.00 0.00 4.79
3223 3255 4.468689 GCCTAGCCACCACCGTCC 62.469 72.222 0.00 0.00 0.00 4.79
3224 3256 4.143333 CCTAGCCACCACCGTCCG 62.143 72.222 0.00 0.00 0.00 4.79
3225 3257 4.814294 CTAGCCACCACCGTCCGC 62.814 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.636231 TGGCCACACGAGGAAGGG 61.636 66.667 0.00 0.00 0.00 3.95
60 61 2.294074 GTTCAACAGTTAGGTGTGGCA 58.706 47.619 0.00 0.00 35.97 4.92
162 163 3.128589 GTGACAAGAGAGTGCCACAAAAA 59.871 43.478 0.00 0.00 0.00 1.94
206 207 1.224592 GCCGGATGGATGAAGTGGT 59.775 57.895 5.05 0.00 37.49 4.16
281 282 4.041198 AGAAGGACACCTTTCGGTATTTGA 59.959 41.667 4.51 0.00 44.82 2.69
357 358 2.415168 CGAGTACATGATGTGCGGTTTT 59.585 45.455 8.61 0.00 38.05 2.43
513 515 6.867519 TGAGGTCACAAAGGATATACAAGA 57.132 37.500 0.00 0.00 0.00 3.02
540 542 5.170748 CCCTTATCTTTTTGCATTGGTGAC 58.829 41.667 0.00 0.00 0.00 3.67
593 595 5.359194 ACACTGATGACTTCCCGATTAAT 57.641 39.130 0.00 0.00 0.00 1.40
634 636 7.815549 ACATGTACGATAATGTTGTGACAAGTA 59.184 33.333 0.00 0.00 39.66 2.24
667 669 5.523916 CCTTCATCAAAGTACATTACCCTCG 59.476 44.000 0.00 0.00 32.69 4.63
726 728 3.841255 AGGAGACAAGAAAAGTAGGAGGG 59.159 47.826 0.00 0.00 0.00 4.30
731 733 5.105513 GGGAGAGAGGAGACAAGAAAAGTAG 60.106 48.000 0.00 0.00 0.00 2.57
778 780 3.518634 TTCTTGTTGTGGAGCAAAACC 57.481 42.857 0.00 0.00 39.03 3.27
788 790 5.696724 AGAGGTCGTCTAATTTCTTGTTGTG 59.303 40.000 0.00 0.00 31.71 3.33
789 791 5.855045 AGAGGTCGTCTAATTTCTTGTTGT 58.145 37.500 0.00 0.00 31.71 3.32
791 793 5.011738 TGGAGAGGTCGTCTAATTTCTTGTT 59.988 40.000 0.00 0.00 34.71 2.83
813 815 4.644103 AGCAAAATTCTGATCGGATTGG 57.356 40.909 15.07 3.85 0.00 3.16
831 833 3.953712 TTAGTCGATCAGGTTGAAGCA 57.046 42.857 0.00 0.00 0.00 3.91
845 847 1.289380 GGCCGGCCTAGATTAGTCG 59.711 63.158 38.76 0.00 0.00 4.18
848 850 2.657237 CCGGCCGGCCTAGATTAG 59.343 66.667 41.01 24.24 0.00 1.73
900 902 2.032634 GCGTGGCACGAGGAATTCA 61.033 57.895 40.94 0.00 46.05 2.57
914 916 1.664333 GCAAACAATGGTGGGCGTG 60.664 57.895 0.00 0.00 0.00 5.34
916 918 1.373246 CTGCAAACAATGGTGGGCG 60.373 57.895 0.00 0.00 31.55 6.13
917 919 0.965439 TACTGCAAACAATGGTGGGC 59.035 50.000 0.00 0.00 0.00 5.36
920 922 2.553602 TGAGCTACTGCAAACAATGGTG 59.446 45.455 0.00 0.00 42.74 4.17
921 923 2.862541 TGAGCTACTGCAAACAATGGT 58.137 42.857 0.00 0.00 42.74 3.55
962 964 0.252974 TCCCCGGATCCTTCCTCAAA 60.253 55.000 10.75 0.00 40.17 2.69
964 966 1.075226 CTCCCCGGATCCTTCCTCA 60.075 63.158 10.75 0.00 40.17 3.86
965 967 0.398664 TTCTCCCCGGATCCTTCCTC 60.399 60.000 10.75 0.00 40.17 3.71
966 968 0.399233 CTTCTCCCCGGATCCTTCCT 60.399 60.000 10.75 0.00 40.17 3.36
968 970 1.051556 AGCTTCTCCCCGGATCCTTC 61.052 60.000 10.75 0.00 0.00 3.46
969 971 1.003573 AGCTTCTCCCCGGATCCTT 59.996 57.895 10.75 0.00 0.00 3.36
970 972 1.764054 CAGCTTCTCCCCGGATCCT 60.764 63.158 10.75 0.00 0.00 3.24
971 973 1.338136 TTCAGCTTCTCCCCGGATCC 61.338 60.000 0.73 0.00 0.00 3.36
973 975 0.543749 CTTTCAGCTTCTCCCCGGAT 59.456 55.000 0.73 0.00 0.00 4.18
974 976 1.983224 CTTTCAGCTTCTCCCCGGA 59.017 57.895 0.73 0.00 0.00 5.14
975 977 1.746991 GCTTTCAGCTTCTCCCCGG 60.747 63.158 0.00 0.00 38.45 5.73
976 978 1.746991 GGCTTTCAGCTTCTCCCCG 60.747 63.158 0.00 0.00 41.99 5.73
977 979 1.746991 CGGCTTTCAGCTTCTCCCC 60.747 63.158 0.00 0.00 41.99 4.81
978 980 2.402572 GCGGCTTTCAGCTTCTCCC 61.403 63.158 0.00 0.00 41.99 4.30
979 981 2.744768 CGCGGCTTTCAGCTTCTCC 61.745 63.158 0.00 0.00 41.99 3.71
1044 1046 1.558756 CCTCCTGCTCCTCTTGTGATT 59.441 52.381 0.00 0.00 0.00 2.57
1124 1129 0.320683 CACCTGGATGTCGCAGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
1346 1351 2.087009 GCGAAGTCGTCCAGGAACG 61.087 63.158 2.25 0.00 43.92 3.95
1929 1934 2.827190 TCCGGATCCAGACGACCG 60.827 66.667 13.41 0.00 44.16 4.79
1931 1936 1.448922 CTCCTCCGGATCCAGACGAC 61.449 65.000 13.41 0.00 0.00 4.34
1975 1980 3.230134 CAGTAGAAGAGAGGAGATGGGG 58.770 54.545 0.00 0.00 0.00 4.96
1976 1981 3.909732 ACAGTAGAAGAGAGGAGATGGG 58.090 50.000 0.00 0.00 0.00 4.00
2028 2033 8.630054 AGCATCAGTTTTACCAGTATTTTACA 57.370 30.769 0.00 0.00 0.00 2.41
2072 2077 1.016627 AACGCACCATCGGAATCATG 58.983 50.000 0.00 0.00 0.00 3.07
2128 2133 5.008619 TCTTCTTCTCTAGCTGAGCAATG 57.991 43.478 7.39 0.00 42.38 2.82
2129 2134 5.453621 CCATCTTCTTCTCTAGCTGAGCAAT 60.454 44.000 7.39 0.00 42.38 3.56
2204 2209 1.895131 GTTGGAATCTTGTGTGGGCAT 59.105 47.619 0.00 0.00 0.00 4.40
2212 2217 1.813513 CTGCGGAGTTGGAATCTTGT 58.186 50.000 0.00 0.00 0.00 3.16
2388 2395 4.039124 AGGTGTGGTGCTTTCCAAAAATAG 59.961 41.667 0.00 0.00 39.34 1.73
2417 2424 3.794028 CGTTTCTGCCGATTGTTCAAAAA 59.206 39.130 0.00 0.00 0.00 1.94
2437 2447 6.540914 TGTTCTTCTGAATAAAAGGACAACGT 59.459 34.615 0.00 0.00 37.91 3.99
2528 2538 6.428348 GCTGAGAGCATAAACCCTAGGTTTC 61.428 48.000 14.75 1.40 45.64 2.78
2576 2604 4.322801 GCATCACTTTGGACTACTACCAGT 60.323 45.833 0.00 0.00 38.70 4.00
2666 2694 5.011090 TCTTGGATGAATTCGAACGAGAT 57.989 39.130 0.00 0.00 0.00 2.75
2674 2702 5.565592 TGGTCATTTCTTGGATGAATTCG 57.434 39.130 0.04 0.00 35.46 3.34
2727 2755 4.233789 TCAACAAGTGAAGCAACAACAAC 58.766 39.130 0.00 0.00 31.51 3.32
2782 2810 3.119245 CCTTGATGCCATCCAAACTCTTG 60.119 47.826 1.49 0.00 0.00 3.02
2791 2822 0.886490 CCTACGCCTTGATGCCATCC 60.886 60.000 1.49 0.00 0.00 3.51
2810 2841 5.121925 GGCTTTAGAACTTACCAAGTAGTGC 59.878 44.000 0.00 0.00 41.91 4.40
2839 2871 1.448540 CCGAACGGCTGAAGATGCT 60.449 57.895 0.00 0.00 0.00 3.79
2840 2872 3.093278 CCGAACGGCTGAAGATGC 58.907 61.111 0.00 0.00 0.00 3.91
2859 2891 0.598065 CTTTTTCGGCACCCTGAAGG 59.402 55.000 0.00 0.00 43.78 3.46
2860 2892 1.537202 CTCTTTTTCGGCACCCTGAAG 59.463 52.381 0.00 0.00 0.00 3.02
2861 2893 1.604604 CTCTTTTTCGGCACCCTGAA 58.395 50.000 0.00 0.00 0.00 3.02
2862 2894 0.889186 GCTCTTTTTCGGCACCCTGA 60.889 55.000 0.00 0.00 0.00 3.86
2863 2895 1.581447 GCTCTTTTTCGGCACCCTG 59.419 57.895 0.00 0.00 0.00 4.45
2864 2896 1.603739 GGCTCTTTTTCGGCACCCT 60.604 57.895 0.00 0.00 0.00 4.34
2865 2897 2.636412 GGGCTCTTTTTCGGCACCC 61.636 63.158 0.00 0.00 0.00 4.61
2866 2898 2.636412 GGGGCTCTTTTTCGGCACC 61.636 63.158 0.00 0.00 42.51 5.01
2867 2899 2.636412 GGGGGCTCTTTTTCGGCAC 61.636 63.158 0.00 0.00 0.00 5.01
2868 2900 2.282887 GGGGGCTCTTTTTCGGCA 60.283 61.111 0.00 0.00 0.00 5.69
2869 2901 2.035783 AGGGGGCTCTTTTTCGGC 59.964 61.111 0.00 0.00 0.00 5.54
2870 2902 1.678970 CCAGGGGGCTCTTTTTCGG 60.679 63.158 0.00 0.00 0.00 4.30
2871 2903 1.678970 CCCAGGGGGCTCTTTTTCG 60.679 63.158 0.00 0.00 35.35 3.46
2872 2904 4.442038 CCCAGGGGGCTCTTTTTC 57.558 61.111 0.00 0.00 35.35 2.29
2896 2928 1.595382 ATGTCAATCTAGCGCCGGC 60.595 57.895 19.07 19.07 40.37 6.13
2897 2929 0.530650 ACATGTCAATCTAGCGCCGG 60.531 55.000 2.29 0.00 0.00 6.13
2898 2930 0.578683 CACATGTCAATCTAGCGCCG 59.421 55.000 2.29 0.00 0.00 6.46
2899 2931 1.863454 CTCACATGTCAATCTAGCGCC 59.137 52.381 2.29 0.00 0.00 6.53
2900 2932 1.863454 CCTCACATGTCAATCTAGCGC 59.137 52.381 0.00 0.00 0.00 5.92
2901 2933 2.159043 ACCCTCACATGTCAATCTAGCG 60.159 50.000 0.00 0.00 0.00 4.26
2902 2934 3.118629 TCACCCTCACATGTCAATCTAGC 60.119 47.826 0.00 0.00 0.00 3.42
2903 2935 4.437239 GTCACCCTCACATGTCAATCTAG 58.563 47.826 0.00 0.00 0.00 2.43
2904 2936 3.197766 GGTCACCCTCACATGTCAATCTA 59.802 47.826 0.00 0.00 0.00 1.98
2905 2937 2.026822 GGTCACCCTCACATGTCAATCT 60.027 50.000 0.00 0.00 0.00 2.40
2906 2938 2.026822 AGGTCACCCTCACATGTCAATC 60.027 50.000 0.00 0.00 35.62 2.67
2907 2939 1.988107 AGGTCACCCTCACATGTCAAT 59.012 47.619 0.00 0.00 35.62 2.57
2908 2940 1.434188 AGGTCACCCTCACATGTCAA 58.566 50.000 0.00 0.00 35.62 3.18
2909 2941 2.179427 CTAGGTCACCCTCACATGTCA 58.821 52.381 0.00 0.00 41.45 3.58
2910 2942 1.134670 GCTAGGTCACCCTCACATGTC 60.135 57.143 0.00 0.00 41.45 3.06
2911 2943 0.905357 GCTAGGTCACCCTCACATGT 59.095 55.000 0.00 0.00 41.45 3.21
2912 2944 1.137872 GAGCTAGGTCACCCTCACATG 59.862 57.143 16.98 0.00 41.45 3.21
2913 2945 1.007721 AGAGCTAGGTCACCCTCACAT 59.992 52.381 23.18 0.00 41.45 3.21
2914 2946 0.409876 AGAGCTAGGTCACCCTCACA 59.590 55.000 23.18 0.00 41.45 3.58
2915 2947 1.107945 GAGAGCTAGGTCACCCTCAC 58.892 60.000 23.18 0.08 41.45 3.51
2916 2948 0.704664 TGAGAGCTAGGTCACCCTCA 59.295 55.000 23.18 14.77 41.45 3.86
2917 2949 1.341581 ACTGAGAGCTAGGTCACCCTC 60.342 57.143 23.18 12.45 41.45 4.30
2918 2950 0.707616 ACTGAGAGCTAGGTCACCCT 59.292 55.000 23.18 2.82 45.51 4.34
2919 2951 1.107945 GACTGAGAGCTAGGTCACCC 58.892 60.000 23.18 12.24 0.00 4.61
2920 2952 0.736053 CGACTGAGAGCTAGGTCACC 59.264 60.000 23.18 14.53 0.00 4.02
2921 2953 1.399089 GACGACTGAGAGCTAGGTCAC 59.601 57.143 23.18 17.47 0.00 3.67
2922 2954 1.740297 GACGACTGAGAGCTAGGTCA 58.260 55.000 23.18 3.99 0.00 4.02
2923 2955 0.653636 CGACGACTGAGAGCTAGGTC 59.346 60.000 14.19 14.19 0.00 3.85
2924 2956 0.745128 CCGACGACTGAGAGCTAGGT 60.745 60.000 0.00 0.00 0.00 3.08
2925 2957 2.018544 CCGACGACTGAGAGCTAGG 58.981 63.158 0.00 0.00 0.00 3.02
2926 2958 1.353804 GCCGACGACTGAGAGCTAG 59.646 63.158 0.00 0.00 0.00 3.42
2927 2959 2.113433 GGCCGACGACTGAGAGCTA 61.113 63.158 0.00 0.00 0.00 3.32
2928 2960 3.444805 GGCCGACGACTGAGAGCT 61.445 66.667 0.00 0.00 0.00 4.09
2929 2961 4.500116 GGGCCGACGACTGAGAGC 62.500 72.222 0.00 0.00 0.00 4.09
2930 2962 2.636412 TTGGGCCGACGACTGAGAG 61.636 63.158 0.00 0.00 0.00 3.20
2931 2963 2.599281 TTGGGCCGACGACTGAGA 60.599 61.111 0.00 0.00 0.00 3.27
2932 2964 2.432628 GTTGGGCCGACGACTGAG 60.433 66.667 8.47 0.00 0.00 3.35
2933 2965 4.351938 CGTTGGGCCGACGACTGA 62.352 66.667 37.32 0.00 43.17 3.41
2958 2990 1.640428 ACATAATATCGCCGCATCCG 58.360 50.000 0.00 0.00 0.00 4.18
2959 2991 3.517602 TGTACATAATATCGCCGCATCC 58.482 45.455 0.00 0.00 0.00 3.51
2960 2992 5.524511 TTTGTACATAATATCGCCGCATC 57.475 39.130 0.00 0.00 0.00 3.91
2961 2993 5.933187 TTTTGTACATAATATCGCCGCAT 57.067 34.783 0.00 0.00 0.00 4.73
2962 2994 5.736486 TTTTTGTACATAATATCGCCGCA 57.264 34.783 0.00 0.00 0.00 5.69
2963 2995 8.785101 CATAATTTTTGTACATAATATCGCCGC 58.215 33.333 0.00 0.00 0.00 6.53
2964 2996 9.820229 ACATAATTTTTGTACATAATATCGCCG 57.180 29.630 0.00 0.00 0.00 6.46
2974 3006 8.474831 GGGGCTCTTTACATAATTTTTGTACAT 58.525 33.333 0.00 0.00 29.60 2.29
2975 3007 7.093684 GGGGGCTCTTTACATAATTTTTGTACA 60.094 37.037 0.00 0.00 29.60 2.90
2976 3008 7.123697 AGGGGGCTCTTTACATAATTTTTGTAC 59.876 37.037 0.00 0.00 29.60 2.90
2977 3009 7.123547 CAGGGGGCTCTTTACATAATTTTTGTA 59.876 37.037 0.00 0.00 0.00 2.41
2978 3010 6.022958 AGGGGGCTCTTTACATAATTTTTGT 58.977 36.000 0.00 0.00 0.00 2.83
2979 3011 6.340522 CAGGGGGCTCTTTACATAATTTTTG 58.659 40.000 0.00 0.00 0.00 2.44
2980 3012 5.425217 CCAGGGGGCTCTTTACATAATTTTT 59.575 40.000 0.00 0.00 0.00 1.94
2981 3013 4.962362 CCAGGGGGCTCTTTACATAATTTT 59.038 41.667 0.00 0.00 0.00 1.82
2982 3014 4.546674 CCAGGGGGCTCTTTACATAATTT 58.453 43.478 0.00 0.00 0.00 1.82
2983 3015 3.117131 CCCAGGGGGCTCTTTACATAATT 60.117 47.826 0.00 0.00 35.35 1.40
2984 3016 2.447047 CCCAGGGGGCTCTTTACATAAT 59.553 50.000 0.00 0.00 35.35 1.28
2985 3017 1.850345 CCCAGGGGGCTCTTTACATAA 59.150 52.381 0.00 0.00 35.35 1.90
2986 3018 1.518367 CCCAGGGGGCTCTTTACATA 58.482 55.000 0.00 0.00 35.35 2.29
2987 3019 2.321720 CCCAGGGGGCTCTTTACAT 58.678 57.895 0.00 0.00 35.35 2.29
2988 3020 3.835134 CCCAGGGGGCTCTTTACA 58.165 61.111 0.00 0.00 35.35 2.41
3012 3044 1.595382 ATGTCAATCTAGCGCCGGC 60.595 57.895 19.07 19.07 40.37 6.13
3013 3045 0.530650 ACATGTCAATCTAGCGCCGG 60.531 55.000 2.29 0.00 0.00 6.13
3014 3046 0.578683 CACATGTCAATCTAGCGCCG 59.421 55.000 2.29 0.00 0.00 6.46
3015 3047 1.863454 CTCACATGTCAATCTAGCGCC 59.137 52.381 2.29 0.00 0.00 6.53
3016 3048 1.863454 CCTCACATGTCAATCTAGCGC 59.137 52.381 0.00 0.00 0.00 5.92
3017 3049 2.159043 ACCCTCACATGTCAATCTAGCG 60.159 50.000 0.00 0.00 0.00 4.26
3018 3050 3.118629 TCACCCTCACATGTCAATCTAGC 60.119 47.826 0.00 0.00 0.00 3.42
3019 3051 4.437239 GTCACCCTCACATGTCAATCTAG 58.563 47.826 0.00 0.00 0.00 2.43
3020 3052 3.197766 GGTCACCCTCACATGTCAATCTA 59.802 47.826 0.00 0.00 0.00 1.98
3021 3053 2.026822 GGTCACCCTCACATGTCAATCT 60.027 50.000 0.00 0.00 0.00 2.40
3022 3054 2.026822 AGGTCACCCTCACATGTCAATC 60.027 50.000 0.00 0.00 35.62 2.67
3023 3055 1.988107 AGGTCACCCTCACATGTCAAT 59.012 47.619 0.00 0.00 35.62 2.57
3024 3056 1.434188 AGGTCACCCTCACATGTCAA 58.566 50.000 0.00 0.00 35.62 3.18
3025 3057 2.179427 CTAGGTCACCCTCACATGTCA 58.821 52.381 0.00 0.00 41.45 3.58
3026 3058 1.134670 GCTAGGTCACCCTCACATGTC 60.135 57.143 0.00 0.00 41.45 3.06
3027 3059 0.905357 GCTAGGTCACCCTCACATGT 59.095 55.000 0.00 0.00 41.45 3.21
3028 3060 1.137872 GAGCTAGGTCACCCTCACATG 59.862 57.143 16.98 0.00 41.45 3.21
3029 3061 1.007721 AGAGCTAGGTCACCCTCACAT 59.992 52.381 23.18 0.00 41.45 3.21
3030 3062 0.409876 AGAGCTAGGTCACCCTCACA 59.590 55.000 23.18 0.00 41.45 3.58
3031 3063 1.107945 GAGAGCTAGGTCACCCTCAC 58.892 60.000 23.18 0.08 41.45 3.51
3032 3064 0.704664 TGAGAGCTAGGTCACCCTCA 59.295 55.000 23.18 14.77 41.45 3.86
3033 3065 1.341581 ACTGAGAGCTAGGTCACCCTC 60.342 57.143 23.18 12.45 41.45 4.30
3034 3066 0.707616 ACTGAGAGCTAGGTCACCCT 59.292 55.000 23.18 2.82 45.51 4.34
3035 3067 1.107945 GACTGAGAGCTAGGTCACCC 58.892 60.000 23.18 12.24 0.00 4.61
3036 3068 0.736053 CGACTGAGAGCTAGGTCACC 59.264 60.000 23.18 14.53 0.00 4.02
3037 3069 1.399089 GACGACTGAGAGCTAGGTCAC 59.601 57.143 23.18 17.47 0.00 3.67
3038 3070 1.740297 GACGACTGAGAGCTAGGTCA 58.260 55.000 23.18 3.99 0.00 4.02
3039 3071 0.653636 CGACGACTGAGAGCTAGGTC 59.346 60.000 14.19 14.19 0.00 3.85
3040 3072 0.745128 CCGACGACTGAGAGCTAGGT 60.745 60.000 0.00 0.00 0.00 3.08
3041 3073 2.018544 CCGACGACTGAGAGCTAGG 58.981 63.158 0.00 0.00 0.00 3.02
3042 3074 1.353804 GCCGACGACTGAGAGCTAG 59.646 63.158 0.00 0.00 0.00 3.42
3043 3075 2.113433 GGCCGACGACTGAGAGCTA 61.113 63.158 0.00 0.00 0.00 3.32
3044 3076 3.444805 GGCCGACGACTGAGAGCT 61.445 66.667 0.00 0.00 0.00 4.09
3045 3077 4.500116 GGGCCGACGACTGAGAGC 62.500 72.222 0.00 0.00 0.00 4.09
3046 3078 2.636412 TTGGGCCGACGACTGAGAG 61.636 63.158 0.00 0.00 0.00 3.20
3047 3079 2.599281 TTGGGCCGACGACTGAGA 60.599 61.111 0.00 0.00 0.00 3.27
3048 3080 2.432628 GTTGGGCCGACGACTGAG 60.433 66.667 8.47 0.00 0.00 3.35
3049 3081 4.351938 CGTTGGGCCGACGACTGA 62.352 66.667 37.32 0.00 43.17 3.41
3074 3106 1.640428 ACATAATATCGCCGCATCCG 58.360 50.000 0.00 0.00 0.00 4.18
3075 3107 3.517602 TGTACATAATATCGCCGCATCC 58.482 45.455 0.00 0.00 0.00 3.51
3076 3108 5.524511 TTTGTACATAATATCGCCGCATC 57.475 39.130 0.00 0.00 0.00 3.91
3077 3109 5.933187 TTTTGTACATAATATCGCCGCAT 57.067 34.783 0.00 0.00 0.00 4.73
3078 3110 5.736486 TTTTTGTACATAATATCGCCGCA 57.264 34.783 0.00 0.00 0.00 5.69
3079 3111 8.785101 CATAATTTTTGTACATAATATCGCCGC 58.215 33.333 0.00 0.00 0.00 6.53
3080 3112 9.820229 ACATAATTTTTGTACATAATATCGCCG 57.180 29.630 0.00 0.00 0.00 6.46
3090 3122 9.134734 CGCCAAGTTTACATAATTTTTGTACAT 57.865 29.630 0.00 0.00 29.60 2.29
3091 3123 8.350722 TCGCCAAGTTTACATAATTTTTGTACA 58.649 29.630 0.00 0.00 29.60 2.90
3092 3124 8.632551 GTCGCCAAGTTTACATAATTTTTGTAC 58.367 33.333 0.00 0.00 29.60 2.90
3093 3125 8.350722 TGTCGCCAAGTTTACATAATTTTTGTA 58.649 29.630 0.00 0.00 0.00 2.41
3094 3126 7.203910 TGTCGCCAAGTTTACATAATTTTTGT 58.796 30.769 0.00 0.00 0.00 2.83
3095 3127 7.630470 TGTCGCCAAGTTTACATAATTTTTG 57.370 32.000 0.00 0.00 0.00 2.44
3096 3128 8.825667 AATGTCGCCAAGTTTACATAATTTTT 57.174 26.923 0.00 0.00 32.44 1.94
3097 3129 8.707839 CAAATGTCGCCAAGTTTACATAATTTT 58.292 29.630 0.00 0.00 32.44 1.82
3098 3130 7.148656 GCAAATGTCGCCAAGTTTACATAATTT 60.149 33.333 0.00 0.00 32.44 1.82
3099 3131 6.310224 GCAAATGTCGCCAAGTTTACATAATT 59.690 34.615 0.00 0.00 32.44 1.40
3100 3132 5.804979 GCAAATGTCGCCAAGTTTACATAAT 59.195 36.000 0.00 0.00 32.44 1.28
3101 3133 5.157781 GCAAATGTCGCCAAGTTTACATAA 58.842 37.500 0.00 0.00 32.44 1.90
3102 3134 4.216472 TGCAAATGTCGCCAAGTTTACATA 59.784 37.500 0.00 0.00 32.44 2.29
3103 3135 3.005261 TGCAAATGTCGCCAAGTTTACAT 59.995 39.130 0.00 0.00 34.11 2.29
3104 3136 2.359214 TGCAAATGTCGCCAAGTTTACA 59.641 40.909 0.00 0.00 0.00 2.41
3105 3137 2.724174 GTGCAAATGTCGCCAAGTTTAC 59.276 45.455 0.00 0.00 0.00 2.01
3106 3138 2.603412 CGTGCAAATGTCGCCAAGTTTA 60.603 45.455 0.00 0.00 0.00 2.01
3107 3139 1.851658 GTGCAAATGTCGCCAAGTTT 58.148 45.000 0.00 0.00 0.00 2.66
3108 3140 0.317770 CGTGCAAATGTCGCCAAGTT 60.318 50.000 0.00 0.00 0.00 2.66
3109 3141 1.163420 TCGTGCAAATGTCGCCAAGT 61.163 50.000 0.00 0.00 0.00 3.16
3110 3142 0.040514 TTCGTGCAAATGTCGCCAAG 60.041 50.000 0.00 0.00 0.00 3.61
3111 3143 0.317436 GTTCGTGCAAATGTCGCCAA 60.317 50.000 0.00 0.00 0.00 4.52
3112 3144 1.163420 AGTTCGTGCAAATGTCGCCA 61.163 50.000 0.00 0.00 0.00 5.69
3113 3145 0.452784 GAGTTCGTGCAAATGTCGCC 60.453 55.000 0.00 0.00 0.00 5.54
3114 3146 0.785708 CGAGTTCGTGCAAATGTCGC 60.786 55.000 0.00 0.00 34.11 5.19
3115 3147 0.179250 CCGAGTTCGTGCAAATGTCG 60.179 55.000 0.00 0.00 37.74 4.35
3116 3148 0.452784 GCCGAGTTCGTGCAAATGTC 60.453 55.000 0.00 0.00 37.74 3.06
3117 3149 1.574428 GCCGAGTTCGTGCAAATGT 59.426 52.632 0.00 0.00 37.74 2.71
3118 3150 1.509787 CGCCGAGTTCGTGCAAATG 60.510 57.895 12.87 0.00 36.04 2.32
3119 3151 1.225376 TTCGCCGAGTTCGTGCAAAT 61.225 50.000 12.87 0.00 36.04 2.32
3120 3152 1.429927 TTTCGCCGAGTTCGTGCAAA 61.430 50.000 12.87 9.94 36.04 3.68
3121 3153 1.883544 TTTCGCCGAGTTCGTGCAA 60.884 52.632 12.87 6.09 36.04 4.08
3122 3154 2.279584 TTTCGCCGAGTTCGTGCA 60.280 55.556 12.87 0.00 36.04 4.57
3123 3155 1.828331 AAGTTTCGCCGAGTTCGTGC 61.828 55.000 0.48 3.32 37.74 5.34
3124 3156 0.161024 GAAGTTTCGCCGAGTTCGTG 59.839 55.000 0.48 0.00 37.74 4.35
3125 3157 0.249155 TGAAGTTTCGCCGAGTTCGT 60.249 50.000 0.48 0.00 37.74 3.85
3126 3158 1.068474 ATGAAGTTTCGCCGAGTTCG 58.932 50.000 0.00 0.00 39.44 3.95
3127 3159 2.478894 TGAATGAAGTTTCGCCGAGTTC 59.521 45.455 0.00 0.00 0.00 3.01
3128 3160 2.489971 TGAATGAAGTTTCGCCGAGTT 58.510 42.857 0.00 0.00 0.00 3.01
3129 3161 2.163818 TGAATGAAGTTTCGCCGAGT 57.836 45.000 0.00 0.00 0.00 4.18
3130 3162 3.536158 TTTGAATGAAGTTTCGCCGAG 57.464 42.857 0.00 0.00 0.00 4.63
3131 3163 4.497473 AATTTGAATGAAGTTTCGCCGA 57.503 36.364 0.00 0.00 0.00 5.54
3132 3164 4.444056 ACAAATTTGAATGAAGTTTCGCCG 59.556 37.500 24.64 0.00 0.00 6.46
3133 3165 5.905480 ACAAATTTGAATGAAGTTTCGCC 57.095 34.783 24.64 0.00 0.00 5.54
3134 3166 7.388290 TGTACAAATTTGAATGAAGTTTCGC 57.612 32.000 24.64 0.00 0.00 4.70
3165 3197 5.238432 TCAGTCGTAGTTTGCATGTTTTCAT 59.762 36.000 0.00 0.00 41.78 2.57
3166 3198 4.572795 TCAGTCGTAGTTTGCATGTTTTCA 59.427 37.500 0.00 0.00 0.00 2.69
3167 3199 5.090652 TCAGTCGTAGTTTGCATGTTTTC 57.909 39.130 0.00 0.00 0.00 2.29
3168 3200 5.065988 AGTTCAGTCGTAGTTTGCATGTTTT 59.934 36.000 0.00 0.00 0.00 2.43
3169 3201 4.574828 AGTTCAGTCGTAGTTTGCATGTTT 59.425 37.500 0.00 0.00 0.00 2.83
3170 3202 4.127171 AGTTCAGTCGTAGTTTGCATGTT 58.873 39.130 0.00 0.00 0.00 2.71
3171 3203 3.728845 AGTTCAGTCGTAGTTTGCATGT 58.271 40.909 0.00 0.00 0.00 3.21
3172 3204 4.201494 CGTAGTTCAGTCGTAGTTTGCATG 60.201 45.833 0.00 0.00 0.00 4.06
3173 3205 3.918591 CGTAGTTCAGTCGTAGTTTGCAT 59.081 43.478 0.00 0.00 0.00 3.96
3174 3206 3.302555 CGTAGTTCAGTCGTAGTTTGCA 58.697 45.455 0.00 0.00 0.00 4.08
3175 3207 2.090195 GCGTAGTTCAGTCGTAGTTTGC 59.910 50.000 0.00 0.00 0.00 3.68
3176 3208 3.302555 TGCGTAGTTCAGTCGTAGTTTG 58.697 45.455 0.00 0.00 0.00 2.93
3177 3209 3.631145 TGCGTAGTTCAGTCGTAGTTT 57.369 42.857 0.00 0.00 0.00 2.66
3178 3210 3.844577 ATGCGTAGTTCAGTCGTAGTT 57.155 42.857 0.00 0.00 0.00 2.24
3179 3211 4.952262 TTATGCGTAGTTCAGTCGTAGT 57.048 40.909 0.00 0.00 0.00 2.73
3180 3212 5.330295 AGTTTATGCGTAGTTCAGTCGTAG 58.670 41.667 0.00 0.00 0.00 3.51
3181 3213 5.300969 AGTTTATGCGTAGTTCAGTCGTA 57.699 39.130 0.00 0.00 0.00 3.43
3182 3214 4.170292 AGTTTATGCGTAGTTCAGTCGT 57.830 40.909 0.00 0.00 0.00 4.34
3183 3215 4.201758 CGTAGTTTATGCGTAGTTCAGTCG 59.798 45.833 0.00 0.00 31.68 4.18
3184 3216 4.027864 GCGTAGTTTATGCGTAGTTCAGTC 60.028 45.833 0.00 0.00 39.47 3.51
3185 3217 3.855950 GCGTAGTTTATGCGTAGTTCAGT 59.144 43.478 0.00 0.00 39.47 3.41
3186 3218 3.242248 GGCGTAGTTTATGCGTAGTTCAG 59.758 47.826 0.00 0.00 41.57 3.02
3187 3219 3.119388 AGGCGTAGTTTATGCGTAGTTCA 60.119 43.478 0.00 0.00 41.57 3.18
3188 3220 3.442100 AGGCGTAGTTTATGCGTAGTTC 58.558 45.455 0.00 0.00 41.57 3.01
3189 3221 3.515330 AGGCGTAGTTTATGCGTAGTT 57.485 42.857 0.00 0.00 41.57 2.24
3190 3222 4.220533 CTAGGCGTAGTTTATGCGTAGT 57.779 45.455 16.24 0.00 46.29 2.73
3192 3224 2.287788 GGCTAGGCGTAGTTTATGCGTA 60.288 50.000 14.52 3.57 41.57 4.42
3193 3225 1.537562 GGCTAGGCGTAGTTTATGCGT 60.538 52.381 14.52 1.77 41.57 5.24
3194 3226 1.137513 GGCTAGGCGTAGTTTATGCG 58.862 55.000 14.52 0.00 41.57 4.73
3195 3227 1.865340 GTGGCTAGGCGTAGTTTATGC 59.135 52.381 14.52 0.34 39.95 3.14
3196 3228 2.159014 TGGTGGCTAGGCGTAGTTTATG 60.159 50.000 14.52 0.00 0.00 1.90
3197 3229 2.112998 TGGTGGCTAGGCGTAGTTTAT 58.887 47.619 14.52 0.00 0.00 1.40
3198 3230 1.205417 GTGGTGGCTAGGCGTAGTTTA 59.795 52.381 14.52 0.00 0.00 2.01
3199 3231 0.036671 GTGGTGGCTAGGCGTAGTTT 60.037 55.000 14.52 0.00 0.00 2.66
3200 3232 1.595357 GTGGTGGCTAGGCGTAGTT 59.405 57.895 14.52 0.00 0.00 2.24
3201 3233 2.356780 GGTGGTGGCTAGGCGTAGT 61.357 63.158 14.52 0.00 0.00 2.73
3202 3234 2.499685 GGTGGTGGCTAGGCGTAG 59.500 66.667 12.19 9.11 0.00 3.51
3203 3235 3.454573 CGGTGGTGGCTAGGCGTA 61.455 66.667 12.19 0.00 0.00 4.42
3205 3237 4.814294 GACGGTGGTGGCTAGGCG 62.814 72.222 12.19 0.00 0.00 5.52
3206 3238 4.468689 GGACGGTGGTGGCTAGGC 62.469 72.222 9.85 9.85 0.00 3.93
3207 3239 4.143333 CGGACGGTGGTGGCTAGG 62.143 72.222 0.00 0.00 0.00 3.02
3208 3240 4.814294 GCGGACGGTGGTGGCTAG 62.814 72.222 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.