Multiple sequence alignment - TraesCS2A01G163900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G163900 chr2A 100.000 4440 0 0 1 4440 116151514 116155953 0.000000e+00 8200.0
1 TraesCS2A01G163900 chr2A 96.212 132 5 0 209 340 116151590 116151721 2.690000e-52 217.0
2 TraesCS2A01G163900 chr2A 87.755 98 9 3 209 305 393896051 393896146 1.310000e-20 111.0
3 TraesCS2A01G163900 chr2D 85.507 2339 210 81 1614 3922 114728871 114731110 0.000000e+00 2322.0
4 TraesCS2A01G163900 chr2D 92.907 719 24 5 804 1520 114675450 114676143 0.000000e+00 1020.0
5 TraesCS2A01G163900 chr2D 89.783 783 59 10 1567 2338 114690071 114690843 0.000000e+00 983.0
6 TraesCS2A01G163900 chr2D 90.755 649 37 12 2424 3062 114694921 114695556 0.000000e+00 845.0
7 TraesCS2A01G163900 chr2D 89.664 387 28 3 391 768 114675072 114675455 2.400000e-132 483.0
8 TraesCS2A01G163900 chr2D 81.548 504 56 15 1083 1560 114727679 114728171 9.010000e-102 381.0
9 TraesCS2A01G163900 chr2D 100.000 55 0 0 154 208 202101474 202101420 7.860000e-18 102.0
10 TraesCS2A01G163900 chr2B 88.865 925 40 28 1071 1967 165244196 165245085 0.000000e+00 1079.0
11 TraesCS2A01G163900 chr2B 89.041 803 69 12 3362 4150 165253211 165254008 0.000000e+00 977.0
12 TraesCS2A01G163900 chr2B 89.704 777 53 11 1966 2727 165245117 165245881 0.000000e+00 966.0
13 TraesCS2A01G163900 chr2B 86.364 726 70 20 2580 3304 165252510 165253207 0.000000e+00 765.0
14 TraesCS2A01G163900 chr2B 86.747 581 61 9 1610 2184 165251640 165252210 2.250000e-177 632.0
15 TraesCS2A01G163900 chr2B 92.920 339 22 2 2811 3148 165245940 165246277 3.990000e-135 492.0
16 TraesCS2A01G163900 chr2B 80.876 502 57 15 1088 1560 165250452 165250943 4.220000e-95 359.0
17 TraesCS2A01G163900 chr2B 82.118 425 51 10 399 801 165174799 165175220 1.530000e-89 340.0
18 TraesCS2A01G163900 chr2B 93.421 228 12 3 4160 4385 165255465 165255691 7.120000e-88 335.0
19 TraesCS2A01G163900 chr2B 92.655 177 8 1 894 1070 165243989 165244160 2.650000e-62 250.0
20 TraesCS2A01G163900 chr2B 82.143 252 23 13 2267 2517 165252237 165252467 3.500000e-46 196.0
21 TraesCS2A01G163900 chr2B 96.000 50 2 0 4388 4437 165255745 165255794 1.020000e-11 82.4
22 TraesCS2A01G163900 chr5A 96.129 155 5 1 1 154 666034944 666035098 7.370000e-63 252.0
23 TraesCS2A01G163900 chr5A 96.104 154 5 1 1 153 44263620 44263773 2.650000e-62 250.0
24 TraesCS2A01G163900 chr5A 82.836 134 19 4 1230 1361 397249879 397250010 2.810000e-22 117.0
25 TraesCS2A01G163900 chr1A 96.129 155 5 1 1 154 61701657 61701811 7.370000e-63 252.0
26 TraesCS2A01G163900 chr1A 96.154 78 3 0 209 286 64753136 64753059 1.300000e-25 128.0
27 TraesCS2A01G163900 chr1A 100.000 55 0 0 154 208 267987614 267987560 7.860000e-18 102.0
28 TraesCS2A01G163900 chrUn 96.104 154 5 1 1 153 159792206 159792053 2.650000e-62 250.0
29 TraesCS2A01G163900 chrUn 96.104 154 5 1 1 153 159861272 159861119 2.650000e-62 250.0
30 TraesCS2A01G163900 chrUn 96.104 154 5 1 1 153 465239082 465239235 2.650000e-62 250.0
31 TraesCS2A01G163900 chr6A 96.078 153 6 0 1 153 25941086 25940934 2.650000e-62 250.0
32 TraesCS2A01G163900 chr6A 95.192 104 5 0 286 389 202344982 202345085 9.880000e-37 165.0
33 TraesCS2A01G163900 chr7A 95.484 155 6 1 1 154 56001836 56001682 3.430000e-61 246.0
34 TraesCS2A01G163900 chr7A 93.827 81 5 0 209 289 729345654 729345734 6.030000e-24 122.0
35 TraesCS2A01G163900 chr4A 95.484 155 6 1 1 154 564366910 564366756 3.430000e-61 246.0
36 TraesCS2A01G163900 chr4A 83.158 95 16 0 2624 2718 679076566 679076472 2.200000e-13 87.9
37 TraesCS2A01G163900 chr7B 93.694 111 6 1 285 394 655049331 655049441 9.880000e-37 165.0
38 TraesCS2A01G163900 chr3B 93.396 106 6 1 286 390 488464971 488465076 5.950000e-34 156.0
39 TraesCS2A01G163900 chr1B 90.991 111 8 2 288 396 35646686 35646576 9.950000e-32 148.0
40 TraesCS2A01G163900 chr1B 100.000 55 0 0 154 208 8185681 8185735 7.860000e-18 102.0
41 TraesCS2A01G163900 chr1B 100.000 55 0 0 154 208 316575523 316575469 7.860000e-18 102.0
42 TraesCS2A01G163900 chr6D 94.937 79 4 0 209 287 22796691 22796769 1.680000e-24 124.0
43 TraesCS2A01G163900 chr6D 94.872 78 4 0 209 286 35592220 35592143 6.030000e-24 122.0
44 TraesCS2A01G163900 chr6D 92.500 80 6 0 211 290 22652452 22652531 1.010000e-21 115.0
45 TraesCS2A01G163900 chr7D 94.872 78 4 0 209 286 638491886 638491963 6.030000e-24 122.0
46 TraesCS2A01G163900 chr7D 100.000 55 0 0 154 208 142209739 142209685 7.860000e-18 102.0
47 TraesCS2A01G163900 chr7D 100.000 55 0 0 154 208 153304992 153304938 7.860000e-18 102.0
48 TraesCS2A01G163900 chr7D 97.143 35 1 0 595 629 543914815 543914781 4.800000e-05 60.2
49 TraesCS2A01G163900 chr5D 83.582 134 18 4 1230 1361 299832762 299832893 6.030000e-24 122.0
50 TraesCS2A01G163900 chr5D 100.000 55 0 0 154 208 493271568 493271622 7.860000e-18 102.0
51 TraesCS2A01G163900 chr5B 83.582 134 18 4 1230 1361 341062851 341062982 6.030000e-24 122.0
52 TraesCS2A01G163900 chr3A 93.827 81 3 2 205 285 27517933 27518011 2.170000e-23 121.0
53 TraesCS2A01G163900 chr4B 82.963 135 19 4 1229 1361 115559596 115559464 7.800000e-23 119.0
54 TraesCS2A01G163900 chr4B 86.420 81 11 0 2624 2704 594437324 594437244 6.120000e-14 89.8
55 TraesCS2A01G163900 chr4B 81.633 98 14 4 2624 2718 594359799 594359703 1.320000e-10 78.7
56 TraesCS2A01G163900 chr4D 82.222 135 20 4 1229 1361 81921442 81921310 3.630000e-21 113.0
57 TraesCS2A01G163900 chr4D 86.076 79 9 2 2624 2701 472208689 472208612 2.850000e-12 84.2
58 TraesCS2A01G163900 chr4D 81.633 98 14 4 2624 2718 472166745 472166649 1.320000e-10 78.7
59 TraesCS2A01G163900 chr3D 100.000 55 0 0 154 208 414379349 414379403 7.860000e-18 102.0
60 TraesCS2A01G163900 chr3D 100.000 55 0 0 154 208 414384648 414384702 7.860000e-18 102.0
61 TraesCS2A01G163900 chr1D 96.875 32 1 0 598 629 480705648 480705617 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G163900 chr2A 116151514 116155953 4439 False 8200.000000 8200 100.000000 1 4440 1 chr2A.!!$F1 4439
1 TraesCS2A01G163900 chr2D 114727679 114731110 3431 False 1351.500000 2322 83.527500 1083 3922 2 chr2D.!!$F4 2839
2 TraesCS2A01G163900 chr2D 114690071 114690843 772 False 983.000000 983 89.783000 1567 2338 1 chr2D.!!$F1 771
3 TraesCS2A01G163900 chr2D 114694921 114695556 635 False 845.000000 845 90.755000 2424 3062 1 chr2D.!!$F2 638
4 TraesCS2A01G163900 chr2D 114675072 114676143 1071 False 751.500000 1020 91.285500 391 1520 2 chr2D.!!$F3 1129
5 TraesCS2A01G163900 chr2B 165243989 165246277 2288 False 696.750000 1079 91.036000 894 3148 4 chr2B.!!$F2 2254
6 TraesCS2A01G163900 chr2B 165250452 165255794 5342 False 478.057143 977 87.798857 1088 4437 7 chr2B.!!$F3 3349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.107361 CCGAACGATAGCCCCCTTTT 60.107 55.0 0.00 0.0 42.67 2.27 F
275 276 0.107361 CCGAACGATAGCCCCCTTTT 60.107 55.0 0.00 0.0 42.67 2.27 F
317 318 0.237498 GGTTAGTTGGCTTGACACGC 59.763 55.0 0.00 0.0 0.00 5.34 F
1050 1062 0.247736 AAGCAGGACCTCGACATCAC 59.752 55.0 0.00 0.0 0.00 3.06 F
2260 3083 0.246635 AAGTGCGATCTAACGTGGCT 59.753 50.0 0.00 0.0 35.59 4.75 F
2974 3839 0.032678 CGATCCTGGCGCAGAAGTAT 59.967 55.0 10.83 0.0 32.44 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 2641 0.109458 CCGATCCTGACGACGTTTGA 60.109 55.0 0.13 0.0 0.00 2.69 R
2121 2926 0.183492 TAGCAGGGGCATGTGATTCC 59.817 55.0 0.00 0.0 44.61 3.01 R
2241 3064 0.246635 AGCCACGTTAGATCGCACTT 59.753 50.0 0.00 0.0 0.00 3.16 R
2691 3520 0.034089 CCTTCCGGGAGCTTTGGAAT 60.034 55.0 3.32 0.0 40.76 3.01 R
3161 4026 0.109272 TCACGAGAGGACAACGATGC 60.109 55.0 0.00 0.0 0.00 3.91 R
4209 6544 0.388520 GTGCCCTCAAAATTCCGCAC 60.389 55.0 0.00 0.0 39.72 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.502577 GGGTCCATACGAACCGGG 59.497 66.667 6.32 0.00 39.05 5.73
18 19 2.059786 GGGTCCATACGAACCGGGA 61.060 63.158 6.32 0.00 39.05 5.14
19 20 4.821177 GTCCATACGAACCGGGAC 57.179 61.111 6.32 0.00 42.60 4.46
20 21 1.142531 GTCCATACGAACCGGGACC 59.857 63.158 6.32 0.00 43.14 4.46
21 22 1.305129 TCCATACGAACCGGGACCA 60.305 57.895 6.32 0.00 0.00 4.02
22 23 0.903924 TCCATACGAACCGGGACCAA 60.904 55.000 6.32 0.00 0.00 3.67
23 24 0.179468 CCATACGAACCGGGACCAAT 59.821 55.000 6.32 0.00 0.00 3.16
24 25 1.295792 CATACGAACCGGGACCAATG 58.704 55.000 6.32 0.00 0.00 2.82
25 26 0.463116 ATACGAACCGGGACCAATGC 60.463 55.000 6.32 0.00 0.00 3.56
26 27 2.524951 TACGAACCGGGACCAATGCC 62.525 60.000 6.32 0.00 0.00 4.40
27 28 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
28 29 3.577334 GAACCGGGACCAATGCCCA 62.577 63.158 6.32 0.00 46.36 5.36
29 30 3.879180 AACCGGGACCAATGCCCAC 62.879 63.158 6.32 0.00 46.36 4.61
31 32 4.402528 CGGGACCAATGCCCACGA 62.403 66.667 0.00 0.00 46.36 4.35
32 33 2.438434 GGGACCAATGCCCACGAG 60.438 66.667 0.00 0.00 45.31 4.18
33 34 2.438434 GGACCAATGCCCACGAGG 60.438 66.667 0.00 0.00 39.47 4.63
61 62 4.410400 CCCCCTGGCTCACGAACC 62.410 72.222 0.00 0.00 0.00 3.62
62 63 4.760047 CCCCTGGCTCACGAACCG 62.760 72.222 0.00 0.00 0.00 4.44
63 64 4.760047 CCCTGGCTCACGAACCGG 62.760 72.222 0.00 0.00 0.00 5.28
64 65 4.760047 CCTGGCTCACGAACCGGG 62.760 72.222 6.32 0.00 45.95 5.73
65 66 3.691342 CTGGCTCACGAACCGGGA 61.691 66.667 6.32 0.00 36.75 5.14
66 67 3.934391 CTGGCTCACGAACCGGGAC 62.934 68.421 6.32 0.00 32.99 4.46
81 82 0.670162 GGGACGAATGCATCCATTGG 59.330 55.000 0.00 0.00 41.60 3.16
84 85 1.392589 ACGAATGCATCCATTGGTCC 58.607 50.000 0.00 0.00 43.95 4.46
85 86 0.670162 CGAATGCATCCATTGGTCCC 59.330 55.000 0.00 0.00 41.60 4.46
86 87 0.670162 GAATGCATCCATTGGTCCCG 59.330 55.000 0.00 0.00 41.60 5.14
87 88 0.756442 AATGCATCCATTGGTCCCGG 60.756 55.000 0.00 0.00 40.09 5.73
88 89 1.936767 ATGCATCCATTGGTCCCGGT 61.937 55.000 0.00 0.00 0.00 5.28
89 90 1.379843 GCATCCATTGGTCCCGGTT 60.380 57.895 0.00 0.00 0.00 4.44
90 91 1.384222 GCATCCATTGGTCCCGGTTC 61.384 60.000 0.00 0.00 0.00 3.62
91 92 1.095228 CATCCATTGGTCCCGGTTCG 61.095 60.000 0.00 0.00 0.00 3.95
92 93 1.559065 ATCCATTGGTCCCGGTTCGT 61.559 55.000 0.00 0.00 0.00 3.85
93 94 2.038269 CCATTGGTCCCGGTTCGTG 61.038 63.158 0.00 0.00 0.00 4.35
94 95 2.038269 CATTGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
95 96 2.218454 ATTGGTCCCGGTTCGTGGA 61.218 57.895 0.00 0.00 0.00 4.02
96 97 1.770749 ATTGGTCCCGGTTCGTGGAA 61.771 55.000 0.00 0.00 30.73 3.53
97 98 2.047560 GGTCCCGGTTCGTGGAAG 60.048 66.667 0.00 0.00 30.73 3.46
98 99 2.576832 GGTCCCGGTTCGTGGAAGA 61.577 63.158 0.00 0.00 30.73 2.87
99 100 1.368579 GTCCCGGTTCGTGGAAGAA 59.631 57.895 0.00 0.00 30.73 2.52
104 105 3.961729 GTTCGTGGAAGAACCGGG 58.038 61.111 6.32 0.00 43.33 5.73
105 106 1.368579 GTTCGTGGAAGAACCGGGA 59.631 57.895 6.32 0.00 43.33 5.14
106 107 0.947660 GTTCGTGGAAGAACCGGGAC 60.948 60.000 6.32 0.00 43.33 4.46
107 108 1.117142 TTCGTGGAAGAACCGGGACT 61.117 55.000 6.32 0.73 42.61 3.85
108 109 0.251297 TCGTGGAAGAACCGGGACTA 60.251 55.000 6.32 0.00 42.61 2.59
109 110 0.604578 CGTGGAAGAACCGGGACTAA 59.395 55.000 6.32 0.00 42.61 2.24
110 111 1.206371 CGTGGAAGAACCGGGACTAAT 59.794 52.381 6.32 0.00 42.61 1.73
111 112 2.629051 GTGGAAGAACCGGGACTAATG 58.371 52.381 6.32 0.00 42.61 1.90
112 113 1.557832 TGGAAGAACCGGGACTAATGG 59.442 52.381 6.32 0.00 42.61 3.16
113 114 1.558294 GGAAGAACCGGGACTAATGGT 59.442 52.381 6.32 0.00 37.68 3.55
114 115 2.419713 GGAAGAACCGGGACTAATGGTC 60.420 54.545 6.32 0.00 43.79 4.02
115 116 2.249309 AGAACCGGGACTAATGGTCT 57.751 50.000 6.32 0.00 43.97 3.85
116 117 1.831736 AGAACCGGGACTAATGGTCTG 59.168 52.381 6.32 0.00 43.97 3.51
117 118 0.909623 AACCGGGACTAATGGTCTGG 59.090 55.000 6.32 6.93 43.97 3.86
118 119 1.146263 CCGGGACTAATGGTCTGGC 59.854 63.158 0.00 0.00 43.97 4.85
119 120 1.146263 CGGGACTAATGGTCTGGCC 59.854 63.158 0.00 0.00 43.97 5.36
133 134 3.857038 GGCCAGGCCCGAACGATA 61.857 66.667 21.62 0.00 44.06 2.92
134 135 2.280186 GCCAGGCCCGAACGATAG 60.280 66.667 0.00 0.00 46.19 2.08
135 136 2.280186 CCAGGCCCGAACGATAGC 60.280 66.667 0.00 0.00 42.67 2.97
136 137 2.280186 CAGGCCCGAACGATAGCC 60.280 66.667 0.00 12.37 46.13 3.93
138 139 4.620937 GGCCCGAACGATAGCCCC 62.621 72.222 0.00 0.00 39.60 5.80
139 140 4.620937 GCCCGAACGATAGCCCCC 62.621 72.222 0.00 0.00 42.67 5.40
140 141 2.842936 CCCGAACGATAGCCCCCT 60.843 66.667 0.00 0.00 42.67 4.79
141 142 2.440817 CCCGAACGATAGCCCCCTT 61.441 63.158 0.00 0.00 42.67 3.95
142 143 1.525442 CCGAACGATAGCCCCCTTT 59.475 57.895 0.00 0.00 42.67 3.11
143 144 0.107361 CCGAACGATAGCCCCCTTTT 60.107 55.000 0.00 0.00 42.67 2.27
144 145 1.296727 CGAACGATAGCCCCCTTTTC 58.703 55.000 0.00 0.00 42.67 2.29
145 146 1.134491 CGAACGATAGCCCCCTTTTCT 60.134 52.381 0.00 0.00 42.67 2.52
146 147 2.101917 CGAACGATAGCCCCCTTTTCTA 59.898 50.000 0.00 0.00 42.67 2.10
147 148 3.464907 GAACGATAGCCCCCTTTTCTAC 58.535 50.000 0.00 0.00 42.67 2.59
148 149 2.760581 ACGATAGCCCCCTTTTCTACT 58.239 47.619 0.00 0.00 42.67 2.57
149 150 3.919834 ACGATAGCCCCCTTTTCTACTA 58.080 45.455 0.00 0.00 42.67 1.82
150 151 3.896272 ACGATAGCCCCCTTTTCTACTAG 59.104 47.826 0.00 0.00 42.67 2.57
151 152 3.896272 CGATAGCCCCCTTTTCTACTAGT 59.104 47.826 0.00 0.00 0.00 2.57
152 153 4.262079 CGATAGCCCCCTTTTCTACTAGTG 60.262 50.000 5.39 0.00 0.00 2.74
153 154 3.200958 AGCCCCCTTTTCTACTAGTGA 57.799 47.619 5.39 0.00 0.00 3.41
154 155 3.108376 AGCCCCCTTTTCTACTAGTGAG 58.892 50.000 5.39 0.00 0.00 3.51
155 156 3.105283 GCCCCCTTTTCTACTAGTGAGA 58.895 50.000 5.39 1.93 0.00 3.27
156 157 3.133183 GCCCCCTTTTCTACTAGTGAGAG 59.867 52.174 5.39 0.00 0.00 3.20
157 158 4.611367 CCCCCTTTTCTACTAGTGAGAGA 58.389 47.826 5.39 0.00 0.00 3.10
158 159 5.212745 CCCCCTTTTCTACTAGTGAGAGAT 58.787 45.833 5.39 0.00 0.00 2.75
159 160 6.374588 CCCCCTTTTCTACTAGTGAGAGATA 58.625 44.000 5.39 0.00 0.00 1.98
160 161 7.013834 CCCCCTTTTCTACTAGTGAGAGATAT 58.986 42.308 5.39 0.00 0.00 1.63
161 162 7.511028 CCCCCTTTTCTACTAGTGAGAGATATT 59.489 40.741 5.39 0.00 0.00 1.28
162 163 8.364142 CCCCTTTTCTACTAGTGAGAGATATTG 58.636 40.741 5.39 0.00 0.00 1.90
163 164 8.919145 CCCTTTTCTACTAGTGAGAGATATTGT 58.081 37.037 5.39 0.00 0.00 2.71
167 168 9.575868 TTTCTACTAGTGAGAGATATTGTAGGG 57.424 37.037 5.39 0.00 0.00 3.53
168 169 8.277720 TCTACTAGTGAGAGATATTGTAGGGT 57.722 38.462 5.39 0.00 0.00 4.34
169 170 8.725256 TCTACTAGTGAGAGATATTGTAGGGTT 58.275 37.037 5.39 0.00 0.00 4.11
171 172 8.927675 ACTAGTGAGAGATATTGTAGGGTTAG 57.072 38.462 0.00 0.00 0.00 2.34
172 173 8.504409 ACTAGTGAGAGATATTGTAGGGTTAGT 58.496 37.037 0.00 0.00 0.00 2.24
173 174 9.357161 CTAGTGAGAGATATTGTAGGGTTAGTT 57.643 37.037 0.00 0.00 0.00 2.24
174 175 8.012957 AGTGAGAGATATTGTAGGGTTAGTTG 57.987 38.462 0.00 0.00 0.00 3.16
175 176 7.070074 AGTGAGAGATATTGTAGGGTTAGTTGG 59.930 40.741 0.00 0.00 0.00 3.77
176 177 6.176014 AGAGATATTGTAGGGTTAGTTGGC 57.824 41.667 0.00 0.00 0.00 4.52
177 178 5.905913 AGAGATATTGTAGGGTTAGTTGGCT 59.094 40.000 0.00 0.00 0.00 4.75
178 179 6.387220 AGAGATATTGTAGGGTTAGTTGGCTT 59.613 38.462 0.00 0.00 0.00 4.35
179 180 6.357367 AGATATTGTAGGGTTAGTTGGCTTG 58.643 40.000 0.00 0.00 0.00 4.01
180 181 3.868619 TTGTAGGGTTAGTTGGCTTGT 57.131 42.857 0.00 0.00 0.00 3.16
181 182 3.412237 TGTAGGGTTAGTTGGCTTGTC 57.588 47.619 0.00 0.00 0.00 3.18
182 183 2.706723 TGTAGGGTTAGTTGGCTTGTCA 59.293 45.455 0.00 0.00 0.00 3.58
183 184 2.271944 AGGGTTAGTTGGCTTGTCAC 57.728 50.000 0.00 0.00 0.00 3.67
184 185 0.872388 GGGTTAGTTGGCTTGTCACG 59.128 55.000 0.00 0.00 0.00 4.35
185 186 0.237498 GGTTAGTTGGCTTGTCACGC 59.763 55.000 0.00 0.00 0.00 5.34
186 187 0.941542 GTTAGTTGGCTTGTCACGCA 59.058 50.000 3.49 0.00 0.00 5.24
187 188 1.332375 GTTAGTTGGCTTGTCACGCAA 59.668 47.619 3.49 0.00 35.50 4.85
195 196 4.118480 TGTCACGCAAGACACCAC 57.882 55.556 4.26 0.00 43.18 4.16
196 197 1.522806 TGTCACGCAAGACACCACC 60.523 57.895 4.26 0.00 43.18 4.61
197 198 1.227556 GTCACGCAAGACACCACCT 60.228 57.895 0.97 0.00 43.62 4.00
198 199 1.227527 TCACGCAAGACACCACCTG 60.228 57.895 0.00 0.00 43.62 4.00
199 200 1.523711 CACGCAAGACACCACCTGT 60.524 57.895 0.00 0.00 43.62 4.00
200 201 0.249699 CACGCAAGACACCACCTGTA 60.250 55.000 0.00 0.00 43.62 2.74
201 202 0.685097 ACGCAAGACACCACCTGTAT 59.315 50.000 0.00 0.00 43.62 2.29
202 203 1.897133 ACGCAAGACACCACCTGTATA 59.103 47.619 0.00 0.00 43.62 1.47
203 204 2.500098 ACGCAAGACACCACCTGTATAT 59.500 45.455 0.00 0.00 43.62 0.86
204 205 3.702548 ACGCAAGACACCACCTGTATATA 59.297 43.478 0.00 0.00 43.62 0.86
205 206 4.344102 ACGCAAGACACCACCTGTATATAT 59.656 41.667 0.00 0.00 43.62 0.86
206 207 5.163343 ACGCAAGACACCACCTGTATATATT 60.163 40.000 0.00 0.00 43.62 1.28
207 208 5.177511 CGCAAGACACCACCTGTATATATTG 59.822 44.000 0.00 0.00 43.02 1.90
208 209 5.049405 GCAAGACACCACCTGTATATATTGC 60.049 44.000 0.00 0.00 31.03 3.56
209 210 5.887214 AGACACCACCTGTATATATTGCA 57.113 39.130 0.00 0.00 31.03 4.08
210 211 6.439636 AGACACCACCTGTATATATTGCAT 57.560 37.500 0.00 0.00 31.03 3.96
211 212 6.841601 AGACACCACCTGTATATATTGCATT 58.158 36.000 0.00 0.00 31.03 3.56
212 213 6.936900 AGACACCACCTGTATATATTGCATTC 59.063 38.462 0.00 0.00 31.03 2.67
213 214 5.700832 ACACCACCTGTATATATTGCATTCG 59.299 40.000 0.00 0.00 0.00 3.34
214 215 5.700832 CACCACCTGTATATATTGCATTCGT 59.299 40.000 0.00 0.00 0.00 3.85
215 216 5.932303 ACCACCTGTATATATTGCATTCGTC 59.068 40.000 0.00 0.00 0.00 4.20
216 217 5.351465 CCACCTGTATATATTGCATTCGTCC 59.649 44.000 0.00 0.00 0.00 4.79
217 218 5.351465 CACCTGTATATATTGCATTCGTCCC 59.649 44.000 0.00 0.00 0.00 4.46
218 219 4.566759 CCTGTATATATTGCATTCGTCCCG 59.433 45.833 0.00 0.00 0.00 5.14
219 220 4.500127 TGTATATATTGCATTCGTCCCGG 58.500 43.478 0.00 0.00 0.00 5.73
220 221 3.695830 ATATATTGCATTCGTCCCGGT 57.304 42.857 0.00 0.00 0.00 5.28
221 222 2.341846 ATATTGCATTCGTCCCGGTT 57.658 45.000 0.00 0.00 0.00 4.44
222 223 1.658994 TATTGCATTCGTCCCGGTTC 58.341 50.000 0.00 0.00 0.00 3.62
223 224 1.366111 ATTGCATTCGTCCCGGTTCG 61.366 55.000 0.00 4.79 0.00 3.95
224 225 2.433664 GCATTCGTCCCGGTTCGT 60.434 61.111 13.60 0.00 0.00 3.85
225 226 2.736682 GCATTCGTCCCGGTTCGTG 61.737 63.158 13.60 8.10 0.00 4.35
226 227 2.098233 CATTCGTCCCGGTTCGTGG 61.098 63.158 13.60 3.51 0.00 4.94
227 228 2.277591 ATTCGTCCCGGTTCGTGGA 61.278 57.895 13.60 0.00 0.00 4.02
228 229 1.818959 ATTCGTCCCGGTTCGTGGAA 61.819 55.000 13.60 3.43 30.73 3.53
229 230 2.424705 TTCGTCCCGGTTCGTGGAAG 62.425 60.000 13.60 0.00 30.73 3.46
230 231 2.922950 CGTCCCGGTTCGTGGAAGA 61.923 63.158 0.00 0.00 31.78 2.87
231 232 1.368579 GTCCCGGTTCGTGGAAGAA 59.631 57.895 0.00 0.00 30.73 2.52
236 237 3.961729 GTTCGTGGAAGAACCGGG 58.038 61.111 6.32 0.00 43.33 5.73
237 238 1.368579 GTTCGTGGAAGAACCGGGA 59.631 57.895 6.32 0.00 43.33 5.14
238 239 0.947660 GTTCGTGGAAGAACCGGGAC 60.948 60.000 6.32 0.00 43.33 4.46
239 240 1.117142 TTCGTGGAAGAACCGGGACT 61.117 55.000 6.32 0.73 42.61 3.85
240 241 0.251297 TCGTGGAAGAACCGGGACTA 60.251 55.000 6.32 0.00 42.61 2.59
241 242 0.604578 CGTGGAAGAACCGGGACTAA 59.395 55.000 6.32 0.00 42.61 2.24
242 243 1.206371 CGTGGAAGAACCGGGACTAAT 59.794 52.381 6.32 0.00 42.61 1.73
243 244 2.629051 GTGGAAGAACCGGGACTAATG 58.371 52.381 6.32 0.00 42.61 1.90
244 245 1.557832 TGGAAGAACCGGGACTAATGG 59.442 52.381 6.32 0.00 42.61 3.16
245 246 1.134189 GGAAGAACCGGGACTAATGGG 60.134 57.143 6.32 0.00 0.00 4.00
246 247 0.255033 AAGAACCGGGACTAATGGGC 59.745 55.000 6.32 0.00 0.00 5.36
247 248 0.620700 AGAACCGGGACTAATGGGCT 60.621 55.000 6.32 0.00 0.00 5.19
248 249 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
249 250 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
250 251 2.203209 CGGGACTAATGGGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
251 252 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
252 253 2.689691 GGGACTAATGGGCTGGCCA 61.690 63.158 26.08 26.08 37.98 5.36
253 254 1.152881 GGACTAATGGGCTGGCCAG 60.153 63.158 29.34 29.34 37.98 4.85
254 255 1.152881 GACTAATGGGCTGGCCAGG 60.153 63.158 33.46 20.55 37.98 4.45
265 266 3.857038 GGCCAGGCCCGAACGATA 61.857 66.667 21.62 0.00 44.06 2.92
266 267 2.280186 GCCAGGCCCGAACGATAG 60.280 66.667 0.00 0.00 46.19 2.08
267 268 2.280186 CCAGGCCCGAACGATAGC 60.280 66.667 0.00 0.00 42.67 2.97
268 269 2.280186 CAGGCCCGAACGATAGCC 60.280 66.667 0.00 12.37 46.13 3.93
270 271 4.620937 GGCCCGAACGATAGCCCC 62.621 72.222 0.00 0.00 39.60 5.80
271 272 4.620937 GCCCGAACGATAGCCCCC 62.621 72.222 0.00 0.00 42.67 5.40
272 273 2.842936 CCCGAACGATAGCCCCCT 60.843 66.667 0.00 0.00 42.67 4.79
273 274 2.440817 CCCGAACGATAGCCCCCTT 61.441 63.158 0.00 0.00 42.67 3.95
274 275 1.525442 CCGAACGATAGCCCCCTTT 59.475 57.895 0.00 0.00 42.67 3.11
275 276 0.107361 CCGAACGATAGCCCCCTTTT 60.107 55.000 0.00 0.00 42.67 2.27
276 277 1.680860 CCGAACGATAGCCCCCTTTTT 60.681 52.381 0.00 0.00 42.67 1.94
300 301 9.710818 TTTTACTAGTGAGAGATATTGTAGGGT 57.289 33.333 5.39 0.00 0.00 4.34
301 302 9.710818 TTTACTAGTGAGAGATATTGTAGGGTT 57.289 33.333 5.39 0.00 0.00 4.11
303 304 8.927675 ACTAGTGAGAGATATTGTAGGGTTAG 57.072 38.462 0.00 0.00 0.00 2.34
304 305 8.504409 ACTAGTGAGAGATATTGTAGGGTTAGT 58.496 37.037 0.00 0.00 0.00 2.24
305 306 9.357161 CTAGTGAGAGATATTGTAGGGTTAGTT 57.643 37.037 0.00 0.00 0.00 2.24
306 307 8.012957 AGTGAGAGATATTGTAGGGTTAGTTG 57.987 38.462 0.00 0.00 0.00 3.16
307 308 7.070074 AGTGAGAGATATTGTAGGGTTAGTTGG 59.930 40.741 0.00 0.00 0.00 3.77
308 309 6.176014 AGAGATATTGTAGGGTTAGTTGGC 57.824 41.667 0.00 0.00 0.00 4.52
309 310 5.905913 AGAGATATTGTAGGGTTAGTTGGCT 59.094 40.000 0.00 0.00 0.00 4.75
310 311 6.387220 AGAGATATTGTAGGGTTAGTTGGCTT 59.613 38.462 0.00 0.00 0.00 4.35
311 312 6.357367 AGATATTGTAGGGTTAGTTGGCTTG 58.643 40.000 0.00 0.00 0.00 4.01
312 313 4.650972 ATTGTAGGGTTAGTTGGCTTGA 57.349 40.909 0.00 0.00 0.00 3.02
313 314 3.412237 TGTAGGGTTAGTTGGCTTGAC 57.588 47.619 0.00 0.00 0.00 3.18
314 315 2.706723 TGTAGGGTTAGTTGGCTTGACA 59.293 45.455 0.00 0.00 0.00 3.58
315 316 2.271944 AGGGTTAGTTGGCTTGACAC 57.728 50.000 0.00 0.00 0.00 3.67
316 317 0.872388 GGGTTAGTTGGCTTGACACG 59.128 55.000 0.00 0.00 0.00 4.49
317 318 0.237498 GGTTAGTTGGCTTGACACGC 59.763 55.000 0.00 0.00 0.00 5.34
318 319 0.941542 GTTAGTTGGCTTGACACGCA 59.058 50.000 6.24 0.00 0.00 5.24
319 320 1.332375 GTTAGTTGGCTTGACACGCAA 59.668 47.619 6.24 0.00 34.73 4.85
326 327 4.943822 TTGACACGCAAGACACCA 57.056 50.000 0.00 0.00 43.62 4.17
327 328 2.689083 TTGACACGCAAGACACCAG 58.311 52.632 0.00 0.00 43.62 4.00
328 329 1.436195 TTGACACGCAAGACACCAGC 61.436 55.000 0.00 0.00 43.62 4.85
329 330 1.595382 GACACGCAAGACACCAGCT 60.595 57.895 0.00 0.00 43.62 4.24
330 331 1.835483 GACACGCAAGACACCAGCTG 61.835 60.000 6.78 6.78 43.62 4.24
331 332 1.889105 CACGCAAGACACCAGCTGT 60.889 57.895 13.81 0.00 43.62 4.40
332 333 0.599991 CACGCAAGACACCAGCTGTA 60.600 55.000 13.81 0.00 43.62 2.74
333 334 0.321671 ACGCAAGACACCAGCTGTAT 59.678 50.000 13.81 0.00 43.62 2.29
334 335 1.548719 ACGCAAGACACCAGCTGTATA 59.451 47.619 13.81 0.00 43.62 1.47
335 336 2.168521 ACGCAAGACACCAGCTGTATAT 59.831 45.455 13.81 0.00 43.62 0.86
336 337 3.383505 ACGCAAGACACCAGCTGTATATA 59.616 43.478 13.81 0.00 43.62 0.86
337 338 4.039245 ACGCAAGACACCAGCTGTATATAT 59.961 41.667 13.81 0.00 43.62 0.86
338 339 4.991056 CGCAAGACACCAGCTGTATATATT 59.009 41.667 13.81 0.00 43.02 1.28
339 340 5.107337 CGCAAGACACCAGCTGTATATATTG 60.107 44.000 13.81 10.99 43.02 1.90
340 341 5.760253 GCAAGACACCAGCTGTATATATTGT 59.240 40.000 13.81 3.82 31.03 2.71
341 342 6.929049 GCAAGACACCAGCTGTATATATTGTA 59.071 38.462 13.81 0.00 31.03 2.41
342 343 7.441157 GCAAGACACCAGCTGTATATATTGTAA 59.559 37.037 13.81 0.00 31.03 2.41
343 344 8.765219 CAAGACACCAGCTGTATATATTGTAAC 58.235 37.037 13.81 0.00 31.03 2.50
344 345 7.442656 AGACACCAGCTGTATATATTGTAACC 58.557 38.462 13.81 0.00 31.03 2.85
345 346 6.220930 ACACCAGCTGTATATATTGTAACCG 58.779 40.000 13.81 0.00 0.00 4.44
346 347 6.041182 ACACCAGCTGTATATATTGTAACCGA 59.959 38.462 13.81 0.00 0.00 4.69
347 348 6.365247 CACCAGCTGTATATATTGTAACCGAC 59.635 42.308 13.81 0.00 0.00 4.79
348 349 6.267014 ACCAGCTGTATATATTGTAACCGACT 59.733 38.462 13.81 0.00 0.00 4.18
349 350 6.807230 CCAGCTGTATATATTGTAACCGACTC 59.193 42.308 13.81 0.00 0.00 3.36
350 351 7.309255 CCAGCTGTATATATTGTAACCGACTCT 60.309 40.741 13.81 0.00 0.00 3.24
351 352 7.539022 CAGCTGTATATATTGTAACCGACTCTG 59.461 40.741 5.25 0.00 0.00 3.35
352 353 7.447545 AGCTGTATATATTGTAACCGACTCTGA 59.552 37.037 0.00 0.00 0.00 3.27
353 354 8.244802 GCTGTATATATTGTAACCGACTCTGAT 58.755 37.037 0.00 0.00 0.00 2.90
354 355 9.561270 CTGTATATATTGTAACCGACTCTGATG 57.439 37.037 0.00 0.00 0.00 3.07
355 356 8.520351 TGTATATATTGTAACCGACTCTGATGG 58.480 37.037 0.00 0.00 0.00 3.51
356 357 7.776618 ATATATTGTAACCGACTCTGATGGA 57.223 36.000 0.00 0.00 0.00 3.41
357 358 4.819105 ATTGTAACCGACTCTGATGGAA 57.181 40.909 0.00 0.00 0.00 3.53
358 359 4.819105 TTGTAACCGACTCTGATGGAAT 57.181 40.909 0.00 0.00 0.00 3.01
359 360 5.925506 TTGTAACCGACTCTGATGGAATA 57.074 39.130 0.00 0.00 0.00 1.75
360 361 5.258456 TGTAACCGACTCTGATGGAATAC 57.742 43.478 0.00 2.82 0.00 1.89
361 362 4.707934 TGTAACCGACTCTGATGGAATACA 59.292 41.667 0.00 4.75 0.00 2.29
362 363 4.819105 AACCGACTCTGATGGAATACAA 57.181 40.909 0.00 0.00 0.00 2.41
363 364 5.359194 AACCGACTCTGATGGAATACAAT 57.641 39.130 0.00 0.00 0.00 2.71
364 365 4.697514 ACCGACTCTGATGGAATACAATG 58.302 43.478 0.00 0.00 0.00 2.82
365 366 4.405680 ACCGACTCTGATGGAATACAATGA 59.594 41.667 0.00 0.00 0.00 2.57
366 367 5.104941 ACCGACTCTGATGGAATACAATGAA 60.105 40.000 0.00 0.00 0.00 2.57
367 368 5.994054 CCGACTCTGATGGAATACAATGAAT 59.006 40.000 0.00 0.00 0.00 2.57
368 369 6.484643 CCGACTCTGATGGAATACAATGAATT 59.515 38.462 0.00 0.00 0.00 2.17
369 370 7.350467 CGACTCTGATGGAATACAATGAATTG 58.650 38.462 1.45 1.45 43.26 2.32
370 371 7.035840 ACTCTGATGGAATACAATGAATTGC 57.964 36.000 2.92 0.00 41.38 3.56
371 372 6.604396 ACTCTGATGGAATACAATGAATTGCA 59.396 34.615 2.92 0.00 41.38 4.08
372 373 7.287005 ACTCTGATGGAATACAATGAATTGCAT 59.713 33.333 2.92 2.95 44.83 3.96
375 376 6.989155 ATGGAATACAATGAATTGCATCCT 57.011 33.333 16.72 6.36 40.14 3.24
377 378 8.660295 ATGGAATACAATGAATTGCATCCTAT 57.340 30.769 16.72 9.98 40.14 2.57
378 379 9.758021 ATGGAATACAATGAATTGCATCCTATA 57.242 29.630 16.72 4.74 40.14 1.31
379 380 9.234827 TGGAATACAATGAATTGCATCCTATAG 57.765 33.333 16.72 0.00 41.38 1.31
380 381 9.236006 GGAATACAATGAATTGCATCCTATAGT 57.764 33.333 2.92 0.00 41.38 2.12
384 385 8.388484 ACAATGAATTGCATCCTATAGTCTTC 57.612 34.615 2.92 0.00 41.38 2.87
385 386 8.216423 ACAATGAATTGCATCCTATAGTCTTCT 58.784 33.333 2.92 0.00 41.38 2.85
386 387 9.716531 CAATGAATTGCATCCTATAGTCTTCTA 57.283 33.333 0.00 0.00 35.78 2.10
387 388 9.717942 AATGAATTGCATCCTATAGTCTTCTAC 57.282 33.333 0.00 0.00 35.78 2.59
388 389 8.250143 TGAATTGCATCCTATAGTCTTCTACA 57.750 34.615 0.00 0.00 0.00 2.74
389 390 8.874156 TGAATTGCATCCTATAGTCTTCTACAT 58.126 33.333 0.00 0.00 0.00 2.29
390 391 9.717942 GAATTGCATCCTATAGTCTTCTACATT 57.282 33.333 0.00 0.00 0.00 2.71
391 392 9.499479 AATTGCATCCTATAGTCTTCTACATTG 57.501 33.333 0.00 0.00 0.00 2.82
392 393 7.603180 TGCATCCTATAGTCTTCTACATTGT 57.397 36.000 0.00 0.00 0.00 2.71
393 394 7.436933 TGCATCCTATAGTCTTCTACATTGTG 58.563 38.462 0.00 0.00 0.00 3.33
394 395 7.069950 TGCATCCTATAGTCTTCTACATTGTGT 59.930 37.037 0.00 0.00 0.00 3.72
434 435 8.556194 GCACATCCATTAATGACTCGTAATTAA 58.444 33.333 17.23 2.84 32.16 1.40
481 482 6.090129 TGACCGATAAAAATAAAGCACAAGC 58.910 36.000 0.00 0.00 42.56 4.01
484 485 7.767261 ACCGATAAAAATAAAGCACAAGCATA 58.233 30.769 0.00 0.00 45.49 3.14
485 486 8.413229 ACCGATAAAAATAAAGCACAAGCATAT 58.587 29.630 0.00 0.00 45.49 1.78
498 499 5.684626 GCACAAGCATATCATAGTTTTGAGC 59.315 40.000 0.00 0.00 41.58 4.26
503 504 8.350722 CAAGCATATCATAGTTTTGAGCTTGAT 58.649 33.333 15.81 0.00 45.67 2.57
565 566 4.399618 GTGTATCACTCCTACTCTGAAGCA 59.600 45.833 0.00 0.00 0.00 3.91
572 573 4.404073 ACTCCTACTCTGAAGCACCAATAG 59.596 45.833 0.00 0.00 0.00 1.73
581 582 4.253685 TGAAGCACCAATAGCAAGTAGAC 58.746 43.478 0.00 0.00 0.00 2.59
588 589 4.038162 ACCAATAGCAAGTAGACGAGGATC 59.962 45.833 0.00 0.00 0.00 3.36
626 635 9.967346 CTTCCTTCGTCTCATAATATAAGAACA 57.033 33.333 0.00 0.00 0.00 3.18
631 640 9.489084 TTCGTCTCATAATATAAGAACATTGGG 57.511 33.333 0.00 0.00 0.00 4.12
636 645 7.741785 TCATAATATAAGAACATTGGGACGGT 58.258 34.615 0.00 0.00 0.00 4.83
638 647 3.992943 ATAAGAACATTGGGACGGTGA 57.007 42.857 0.00 0.00 0.00 4.02
674 683 8.375506 TCAACTCTTTTTCACTAGTGATATGGT 58.624 33.333 25.68 15.93 39.64 3.55
776 786 9.983024 TTAAGACCCATCTAATTTAACATTGGA 57.017 29.630 0.00 0.00 33.57 3.53
777 787 7.881775 AGACCCATCTAATTTAACATTGGAC 57.118 36.000 0.00 0.00 31.46 4.02
778 788 6.833933 AGACCCATCTAATTTAACATTGGACC 59.166 38.462 0.00 0.00 31.46 4.46
779 789 6.498538 ACCCATCTAATTTAACATTGGACCA 58.501 36.000 0.00 0.00 0.00 4.02
780 790 6.607198 ACCCATCTAATTTAACATTGGACCAG 59.393 38.462 0.00 0.00 0.00 4.00
781 791 6.607198 CCCATCTAATTTAACATTGGACCAGT 59.393 38.462 0.00 0.00 0.00 4.00
782 792 7.777910 CCCATCTAATTTAACATTGGACCAGTA 59.222 37.037 0.00 0.00 0.00 2.74
783 793 9.354673 CCATCTAATTTAACATTGGACCAGTAT 57.645 33.333 0.00 0.00 0.00 2.12
786 796 9.967451 TCTAATTTAACATTGGACCAGTATGAA 57.033 29.630 12.27 0.00 39.69 2.57
788 798 7.645058 ATTTAACATTGGACCAGTATGAAGG 57.355 36.000 12.27 0.00 39.69 3.46
789 799 3.652057 ACATTGGACCAGTATGAAGGG 57.348 47.619 12.27 0.00 39.69 3.95
790 800 2.919602 ACATTGGACCAGTATGAAGGGT 59.080 45.455 12.27 0.00 39.69 4.34
791 801 4.108570 ACATTGGACCAGTATGAAGGGTA 58.891 43.478 12.27 0.00 39.69 3.69
792 802 4.726825 ACATTGGACCAGTATGAAGGGTAT 59.273 41.667 12.27 0.00 39.69 2.73
793 803 4.771114 TTGGACCAGTATGAAGGGTATG 57.229 45.455 0.00 0.00 39.69 2.39
794 804 3.045634 TGGACCAGTATGAAGGGTATGG 58.954 50.000 0.00 0.00 39.69 2.74
795 805 2.224548 GGACCAGTATGAAGGGTATGGC 60.225 54.545 0.00 0.00 39.69 4.40
796 806 2.706190 GACCAGTATGAAGGGTATGGCT 59.294 50.000 0.00 0.00 39.69 4.75
797 807 2.439507 ACCAGTATGAAGGGTATGGCTG 59.560 50.000 0.00 0.00 39.69 4.85
798 808 2.224621 CCAGTATGAAGGGTATGGCTGG 60.225 54.545 0.00 0.00 39.69 4.85
799 809 2.057922 AGTATGAAGGGTATGGCTGGG 58.942 52.381 0.00 0.00 0.00 4.45
800 810 1.774856 GTATGAAGGGTATGGCTGGGT 59.225 52.381 0.00 0.00 0.00 4.51
801 811 0.846693 ATGAAGGGTATGGCTGGGTC 59.153 55.000 0.00 0.00 0.00 4.46
802 812 0.548926 TGAAGGGTATGGCTGGGTCA 60.549 55.000 0.00 0.00 0.00 4.02
803 813 0.846693 GAAGGGTATGGCTGGGTCAT 59.153 55.000 0.00 0.00 0.00 3.06
804 814 2.054799 GAAGGGTATGGCTGGGTCATA 58.945 52.381 0.00 0.00 0.00 2.15
805 815 2.206322 AGGGTATGGCTGGGTCATAA 57.794 50.000 0.00 0.00 31.70 1.90
806 816 2.718456 AGGGTATGGCTGGGTCATAAT 58.282 47.619 0.00 0.00 31.70 1.28
807 817 3.063650 AGGGTATGGCTGGGTCATAATT 58.936 45.455 0.00 0.00 31.70 1.40
808 818 3.467103 AGGGTATGGCTGGGTCATAATTT 59.533 43.478 0.00 0.00 31.70 1.82
873 884 1.135344 GGTCCGACTGTAGCTGTTCTC 60.135 57.143 0.00 0.00 0.00 2.87
876 887 1.607713 CGACTGTAGCTGTTCTCACG 58.392 55.000 0.00 0.00 0.00 4.35
997 1009 1.471676 GCAGTGGATAGGTTGTCGGAG 60.472 57.143 0.00 0.00 0.00 4.63
1042 1054 4.212214 CGCTCAATTATAAAGCAGGACCTC 59.788 45.833 8.07 0.00 35.76 3.85
1047 1059 5.552870 ATTATAAAGCAGGACCTCGACAT 57.447 39.130 0.00 0.00 0.00 3.06
1048 1060 2.961526 TAAAGCAGGACCTCGACATC 57.038 50.000 0.00 0.00 0.00 3.06
1049 1061 0.976641 AAAGCAGGACCTCGACATCA 59.023 50.000 0.00 0.00 0.00 3.07
1050 1062 0.247736 AAGCAGGACCTCGACATCAC 59.752 55.000 0.00 0.00 0.00 3.06
1051 1063 0.900182 AGCAGGACCTCGACATCACA 60.900 55.000 0.00 0.00 0.00 3.58
1075 1122 1.454572 GCACCTGTCCATTGCACACA 61.455 55.000 0.00 0.00 36.22 3.72
1172 1222 2.205243 AAAGGTACTCGCCGTCGTCC 62.205 60.000 0.00 0.00 38.49 4.79
1206 1256 2.362717 CCTTCGTCTACCTCCATCCTTC 59.637 54.545 0.00 0.00 0.00 3.46
1380 1462 2.690778 GCATGAAGGTGCGTGGGTC 61.691 63.158 0.00 0.00 35.10 4.46
1405 1487 1.742761 CCTTCGCCTATGCCCATATG 58.257 55.000 0.00 0.00 0.00 1.78
1406 1488 1.089920 CTTCGCCTATGCCCATATGC 58.910 55.000 0.00 5.74 33.43 3.14
1409 1491 3.483954 GCCTATGCCCATATGCGAT 57.516 52.632 0.00 0.00 0.00 4.58
1410 1492 1.019673 GCCTATGCCCATATGCGATG 58.980 55.000 0.00 0.00 0.00 3.84
1411 1493 1.019673 CCTATGCCCATATGCGATGC 58.980 55.000 0.00 0.00 0.00 3.91
1412 1494 1.019673 CTATGCCCATATGCGATGCC 58.980 55.000 0.00 0.00 0.00 4.40
1520 1607 1.066257 GCAGCCGGGTAAATGCATG 59.934 57.895 5.47 0.00 38.54 4.06
1521 1608 1.066257 CAGCCGGGTAAATGCATGC 59.934 57.895 11.82 11.82 0.00 4.06
1522 1609 1.379710 AGCCGGGTAAATGCATGCA 60.380 52.632 25.04 25.04 0.00 3.96
1523 1610 0.756442 AGCCGGGTAAATGCATGCAT 60.756 50.000 27.46 27.46 38.46 3.96
1564 1654 4.023707 CCTTTCGCTGAATGATTACCATCC 60.024 45.833 5.99 0.00 33.53 3.51
1570 1761 5.237815 GCTGAATGATTACCATCCACGATA 58.762 41.667 0.00 0.00 33.53 2.92
1575 1766 7.603784 TGAATGATTACCATCCACGATAAGATG 59.396 37.037 0.00 0.00 39.69 2.90
1576 1767 6.419484 TGATTACCATCCACGATAAGATGT 57.581 37.500 0.00 0.00 38.57 3.06
1581 1772 3.496130 CCATCCACGATAAGATGTGAAGC 59.504 47.826 0.00 0.00 38.57 3.86
1585 1776 5.532557 TCCACGATAAGATGTGAAGCTATG 58.467 41.667 0.00 0.00 38.36 2.23
1616 2372 3.546271 GGCGAACTGTTTTTGTGTCTTTC 59.454 43.478 0.00 0.00 0.00 2.62
1799 2565 2.187163 GGCACTACCCGCTTCTCC 59.813 66.667 0.00 0.00 0.00 3.71
1877 2643 2.800053 ACGGTTGTCGACGTGTCA 59.200 55.556 11.62 0.00 42.39 3.58
1878 2644 1.139308 ACGGTTGTCGACGTGTCAA 59.861 52.632 11.62 0.00 42.39 3.18
1975 2774 2.080286 TCTTCACCGACAGCTAAAGC 57.920 50.000 0.00 0.00 42.49 3.51
1981 2780 1.003118 ACCGACAGCTAAAGCATCCAA 59.997 47.619 4.54 0.00 45.16 3.53
1984 2783 2.346803 GACAGCTAAAGCATCCAACGA 58.653 47.619 4.54 0.00 45.16 3.85
1994 2793 1.067635 GCATCCAACGAGCAAATTGGT 60.068 47.619 0.00 0.00 44.86 3.67
2130 2935 0.895530 ACGACACCTCGGAATCACAT 59.104 50.000 0.00 0.00 44.80 3.21
2160 2975 6.413892 TGCTAATAATGTGATGTCTGGTTCA 58.586 36.000 0.00 0.00 0.00 3.18
2176 2991 1.798813 GTTCAAGTTGTCGGCTCGAAT 59.201 47.619 2.11 0.00 37.72 3.34
2187 3010 2.467826 GCTCGAATGCTGGCCTGAC 61.468 63.158 14.77 5.49 0.00 3.51
2241 3064 0.461516 TACACCGCACGTTTCCAACA 60.462 50.000 0.00 0.00 0.00 3.33
2260 3083 0.246635 AAGTGCGATCTAACGTGGCT 59.753 50.000 0.00 0.00 35.59 4.75
2263 3086 2.860628 GCGATCTAACGTGGCTGCG 61.861 63.158 0.00 0.00 35.59 5.18
2432 3261 9.911788 AGTCAGGATAGTAATGAATGAACAATT 57.088 29.630 0.00 0.00 0.00 2.32
2593 3422 5.511088 ACGTAGTCGCTAATGAACTTTTG 57.489 39.130 0.00 0.00 29.74 2.44
2738 3583 0.393267 GCCCATGCATGCCACATTTT 60.393 50.000 21.69 0.00 37.47 1.82
2739 3584 1.658994 CCCATGCATGCCACATTTTC 58.341 50.000 21.69 0.00 0.00 2.29
2742 3587 2.004017 CATGCATGCCACATTTTCCAC 58.996 47.619 14.93 0.00 0.00 4.02
2743 3588 1.046204 TGCATGCCACATTTTCCACA 58.954 45.000 16.68 0.00 0.00 4.17
2751 3603 3.073678 CCACATTTTCCACATCACGAGA 58.926 45.455 0.00 0.00 0.00 4.04
2752 3604 3.125829 CCACATTTTCCACATCACGAGAG 59.874 47.826 0.00 0.00 0.00 3.20
2774 3639 6.259167 AGAGTCTGAAGCTACTATGTTAGACG 59.741 42.308 0.00 0.00 38.56 4.18
2796 3661 3.124128 GGACTAACGGACGGTTCATTTTC 59.876 47.826 1.13 0.00 40.09 2.29
2798 3663 1.970092 AACGGACGGTTCATTTTCCA 58.030 45.000 0.00 0.00 31.79 3.53
2804 3669 0.808125 CGGTTCATTTTCCATGGCGA 59.192 50.000 6.96 0.00 0.00 5.54
2805 3670 1.405105 CGGTTCATTTTCCATGGCGAT 59.595 47.619 6.96 0.00 0.00 4.58
2806 3671 2.159254 CGGTTCATTTTCCATGGCGATT 60.159 45.455 6.96 0.00 0.00 3.34
2807 3672 3.066064 CGGTTCATTTTCCATGGCGATTA 59.934 43.478 6.96 0.00 0.00 1.75
2897 3762 3.461773 CCCCGCACGACATCCTCT 61.462 66.667 0.00 0.00 0.00 3.69
2974 3839 0.032678 CGATCCTGGCGCAGAAGTAT 59.967 55.000 10.83 0.00 32.44 2.12
3083 3948 1.001641 AAGTGCCTCAGGTGCATCC 60.002 57.895 0.00 0.00 41.46 3.51
3121 3986 1.246737 GGGAGAACGGTAGTGTCGGT 61.247 60.000 0.00 0.00 0.00 4.69
3161 4026 3.850098 AAGGCCAAGGCGTGACTGG 62.850 63.158 5.01 0.00 43.06 4.00
3282 4150 6.070881 TGCAAGCCAGATGTGGTAATTTATTT 60.071 34.615 11.09 0.00 46.96 1.40
3350 4219 9.312904 TGGGAGAGAAATATGTTTGATCTTTTT 57.687 29.630 0.00 0.00 0.00 1.94
3447 4318 1.405463 TCGAGATTCTGTGACCATCGG 59.595 52.381 0.00 0.00 0.00 4.18
3460 4331 2.679837 GACCATCGGACGTTCACTACTA 59.320 50.000 0.00 0.00 0.00 1.82
3464 4335 0.798776 CGGACGTTCACTACTACCGT 59.201 55.000 0.00 0.00 37.88 4.83
3481 4352 3.432517 GTCAGAACGAGCAGCTGAT 57.567 52.632 20.43 12.64 40.40 2.90
3494 4365 1.745115 GCTGATGCGCCCAGTAACA 60.745 57.895 22.38 2.22 34.29 2.41
3523 4394 0.898320 AGTCTACTCTGCACGCCAAT 59.102 50.000 0.00 0.00 0.00 3.16
3599 4470 5.478679 CGATGTCTTCACCCTCTAGGATAAT 59.521 44.000 0.00 0.00 39.89 1.28
3606 4477 2.296471 ACCCTCTAGGATAATTGTCGCG 59.704 50.000 0.00 0.00 39.89 5.87
3670 4544 6.243900 ACAATGATCTTCATACATCCCATCC 58.756 40.000 0.00 0.00 35.76 3.51
3672 4546 4.159557 TGATCTTCATACATCCCATCCGA 58.840 43.478 0.00 0.00 0.00 4.55
3691 4565 2.549992 CGAAGTGAAATCCACCTCACCA 60.550 50.000 0.00 0.00 46.87 4.17
3711 4585 2.231478 CACCAGTTCTCGTAGTCCATGT 59.769 50.000 0.00 0.00 0.00 3.21
3788 4665 1.078143 GTGCGAGCCCAGGAAGATT 60.078 57.895 0.00 0.00 0.00 2.40
3810 4687 1.187087 CCCGTGAGTAGCCTTTCTCT 58.813 55.000 0.00 0.00 0.00 3.10
3813 4690 2.416162 CCGTGAGTAGCCTTTCTCTGTC 60.416 54.545 0.00 0.00 0.00 3.51
3821 4698 1.134670 GCCTTTCTCTGTCCGTGCTAT 60.135 52.381 0.00 0.00 0.00 2.97
3899 4776 4.431416 TCAAGGTAAAGAGCCACTTTCA 57.569 40.909 9.28 0.00 44.36 2.69
3915 4792 5.084055 CACTTTCATGTCGATGACACAATG 58.916 41.667 1.11 3.95 45.65 2.82
3920 4797 6.793492 TCATGTCGATGACACAATGTTTTA 57.207 33.333 1.11 0.00 45.65 1.52
3923 4800 8.940952 TCATGTCGATGACACAATGTTTTATTA 58.059 29.630 1.11 0.00 45.65 0.98
3964 4841 1.745489 CAACCCCTTGCGCCTAGAC 60.745 63.158 4.18 0.00 0.00 2.59
3987 4864 5.007039 ACACATCGCACATCATAGAATTGAC 59.993 40.000 0.00 0.00 0.00 3.18
3993 4870 3.183172 CACATCATAGAATTGACGAGCGG 59.817 47.826 0.00 0.00 0.00 5.52
4012 4889 0.445436 GCTGCGTCCATGAGTCTTTG 59.555 55.000 0.00 0.00 0.00 2.77
4062 4939 1.901591 CAAGCCTCCACATCAACACT 58.098 50.000 0.00 0.00 0.00 3.55
4063 4940 2.875672 GCAAGCCTCCACATCAACACTA 60.876 50.000 0.00 0.00 0.00 2.74
4090 4976 5.219633 GGACACACATAAAAACACATCCAC 58.780 41.667 0.00 0.00 0.00 4.02
4107 4993 1.002087 CCACGGAAGCCTTCAACTACT 59.998 52.381 6.80 0.00 0.00 2.57
4123 5009 2.916934 ACTACTGGAGGGTGGCATTTTA 59.083 45.455 0.00 0.00 0.00 1.52
4149 6467 1.000955 CACAGACATCTATACCCGCCC 59.999 57.143 0.00 0.00 0.00 6.13
4155 6473 2.038557 ACATCTATACCCGCCCATGAAC 59.961 50.000 0.00 0.00 0.00 3.18
4157 6475 1.691976 TCTATACCCGCCCATGAACAG 59.308 52.381 0.00 0.00 0.00 3.16
4163 6481 1.889829 CCCGCCCATGAACAGTAAAAA 59.110 47.619 0.00 0.00 0.00 1.94
4196 6531 3.126528 GCATCCAAGATGCCTGGC 58.873 61.111 16.90 12.87 39.01 4.85
4282 6618 7.222611 TCGGCTCTCAAAGAAATTTTGAAAAAG 59.777 33.333 0.00 3.93 37.89 2.27
4296 6632 9.631257 AATTTTGAAAAAGGACATTTTGGAGAT 57.369 25.926 0.00 0.00 40.27 2.75
4327 6663 6.777213 TCCTTTTATCTTAGAGCTTCTCGT 57.223 37.500 0.00 0.00 35.36 4.18
4362 6698 4.202202 CCACCAAATTTTGCACACTCCTAA 60.202 41.667 3.50 0.00 0.00 2.69
4363 6699 5.511202 CCACCAAATTTTGCACACTCCTAAT 60.511 40.000 3.50 0.00 0.00 1.73
4385 6721 4.960938 TGCACTCGAGCATCCTATTTATT 58.039 39.130 13.61 0.00 40.11 1.40
4387 6723 5.822519 TGCACTCGAGCATCCTATTTATTTT 59.177 36.000 13.61 0.00 40.11 1.82
4388 6724 6.318648 TGCACTCGAGCATCCTATTTATTTTT 59.681 34.615 13.61 0.00 40.11 1.94
4437 6824 2.749621 CCAAGGCATCACAAAGTACCTC 59.250 50.000 0.00 0.00 0.00 3.85
4438 6825 3.560025 CCAAGGCATCACAAAGTACCTCT 60.560 47.826 0.00 0.00 0.00 3.69
4439 6826 3.618690 AGGCATCACAAAGTACCTCTC 57.381 47.619 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.059786 TCCCGGTTCGTATGGACCC 61.060 63.158 6.84 0.00 0.00 4.46
2 3 1.142531 GGTCCCGGTTCGTATGGAC 59.857 63.158 0.00 0.00 45.25 4.02
3 4 0.903924 TTGGTCCCGGTTCGTATGGA 60.904 55.000 0.00 0.00 0.00 3.41
5 6 1.295792 CATTGGTCCCGGTTCGTATG 58.704 55.000 0.00 0.00 0.00 2.39
6 7 0.463116 GCATTGGTCCCGGTTCGTAT 60.463 55.000 0.00 0.00 0.00 3.06
7 8 1.078988 GCATTGGTCCCGGTTCGTA 60.079 57.895 0.00 0.00 0.00 3.43
8 9 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
9 10 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
10 11 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
11 12 3.585428 TGGGCATTGGTCCCGGTT 61.585 61.111 0.00 0.00 46.92 4.44
12 13 4.360405 GTGGGCATTGGTCCCGGT 62.360 66.667 0.00 0.00 46.92 5.28
14 15 4.402528 TCGTGGGCATTGGTCCCG 62.403 66.667 0.00 0.00 46.92 5.14
15 16 2.438434 CTCGTGGGCATTGGTCCC 60.438 66.667 0.00 0.00 44.17 4.46
16 17 2.438434 CCTCGTGGGCATTGGTCC 60.438 66.667 0.00 0.00 40.08 4.46
44 45 4.410400 GGTTCGTGAGCCAGGGGG 62.410 72.222 0.00 0.00 37.18 5.40
45 46 4.760047 CGGTTCGTGAGCCAGGGG 62.760 72.222 3.61 0.00 0.00 4.79
46 47 4.760047 CCGGTTCGTGAGCCAGGG 62.760 72.222 3.61 0.00 0.00 4.45
47 48 4.760047 CCCGGTTCGTGAGCCAGG 62.760 72.222 0.00 5.36 0.00 4.45
48 49 3.691342 TCCCGGTTCGTGAGCCAG 61.691 66.667 0.00 0.00 0.00 4.85
49 50 3.998672 GTCCCGGTTCGTGAGCCA 61.999 66.667 0.00 0.00 0.00 4.75
51 52 2.830704 ATTCGTCCCGGTTCGTGAGC 62.831 60.000 13.60 0.00 0.00 4.26
52 53 1.076533 CATTCGTCCCGGTTCGTGAG 61.077 60.000 13.60 3.53 0.00 3.51
53 54 1.080366 CATTCGTCCCGGTTCGTGA 60.080 57.895 13.60 6.24 0.00 4.35
54 55 2.736682 GCATTCGTCCCGGTTCGTG 61.737 63.158 13.60 8.10 0.00 4.35
55 56 2.433664 GCATTCGTCCCGGTTCGT 60.434 61.111 13.60 0.00 0.00 3.85
56 57 1.762222 GATGCATTCGTCCCGGTTCG 61.762 60.000 0.00 4.79 0.00 3.95
57 58 1.436983 GGATGCATTCGTCCCGGTTC 61.437 60.000 0.00 0.00 41.57 3.62
58 59 1.451387 GGATGCATTCGTCCCGGTT 60.451 57.895 0.00 0.00 41.57 4.44
59 60 1.983119 ATGGATGCATTCGTCCCGGT 61.983 55.000 0.00 0.00 45.81 5.28
60 61 0.819259 AATGGATGCATTCGTCCCGG 60.819 55.000 6.63 0.00 45.81 5.73
61 62 0.308684 CAATGGATGCATTCGTCCCG 59.691 55.000 9.80 0.00 45.81 5.14
62 63 0.670162 CCAATGGATGCATTCGTCCC 59.330 55.000 9.80 0.00 45.81 4.46
63 64 1.334869 GACCAATGGATGCATTCGTCC 59.665 52.381 21.56 8.31 46.42 4.79
64 65 1.334869 GGACCAATGGATGCATTCGTC 59.665 52.381 23.24 23.24 33.77 4.20
65 66 1.392589 GGACCAATGGATGCATTCGT 58.607 50.000 9.83 9.83 0.00 3.85
66 67 0.670162 GGGACCAATGGATGCATTCG 59.330 55.000 9.80 6.23 0.00 3.34
67 68 0.670162 CGGGACCAATGGATGCATTC 59.330 55.000 9.80 0.00 0.00 2.67
68 69 0.756442 CCGGGACCAATGGATGCATT 60.756 55.000 6.16 6.63 0.00 3.56
69 70 1.152694 CCGGGACCAATGGATGCAT 60.153 57.895 6.16 0.00 0.00 3.96
70 71 2.148723 AACCGGGACCAATGGATGCA 62.149 55.000 6.16 0.00 0.00 3.96
71 72 1.379843 AACCGGGACCAATGGATGC 60.380 57.895 6.16 0.00 0.00 3.91
72 73 1.095228 CGAACCGGGACCAATGGATG 61.095 60.000 6.16 0.00 0.00 3.51
73 74 1.223487 CGAACCGGGACCAATGGAT 59.777 57.895 6.16 0.00 0.00 3.41
74 75 2.218454 ACGAACCGGGACCAATGGA 61.218 57.895 6.16 0.00 0.00 3.41
75 76 2.038269 CACGAACCGGGACCAATGG 61.038 63.158 6.32 0.00 28.17 3.16
76 77 2.038269 CCACGAACCGGGACCAATG 61.038 63.158 6.32 0.00 28.17 2.82
77 78 1.770749 TTCCACGAACCGGGACCAAT 61.771 55.000 6.32 0.00 31.59 3.16
78 79 2.386064 CTTCCACGAACCGGGACCAA 62.386 60.000 6.32 0.00 31.59 3.67
79 80 2.843411 TTCCACGAACCGGGACCA 60.843 61.111 6.32 0.00 31.59 4.02
80 81 2.047560 CTTCCACGAACCGGGACC 60.048 66.667 6.32 0.00 31.59 4.46
81 82 0.947660 GTTCTTCCACGAACCGGGAC 60.948 60.000 6.32 0.00 37.82 4.46
82 83 1.368579 GTTCTTCCACGAACCGGGA 59.631 57.895 6.32 0.00 37.82 5.14
83 84 3.961729 GTTCTTCCACGAACCGGG 58.038 61.111 6.32 0.00 37.82 5.73
87 88 0.947660 GTCCCGGTTCTTCCACGAAC 60.948 60.000 0.00 0.00 41.91 3.95
88 89 1.117142 AGTCCCGGTTCTTCCACGAA 61.117 55.000 0.00 0.00 35.57 3.85
89 90 0.251297 TAGTCCCGGTTCTTCCACGA 60.251 55.000 0.00 0.00 35.57 4.35
90 91 0.604578 TTAGTCCCGGTTCTTCCACG 59.395 55.000 0.00 0.00 35.57 4.94
91 92 2.629051 CATTAGTCCCGGTTCTTCCAC 58.371 52.381 0.00 0.00 35.57 4.02
92 93 1.557832 CCATTAGTCCCGGTTCTTCCA 59.442 52.381 0.00 0.00 35.57 3.53
93 94 1.558294 ACCATTAGTCCCGGTTCTTCC 59.442 52.381 0.00 0.00 0.00 3.46
94 95 2.902523 GACCATTAGTCCCGGTTCTTC 58.097 52.381 0.00 0.00 39.84 2.87
101 102 1.622607 TGGCCAGACCATTAGTCCCG 61.623 60.000 0.00 0.00 46.36 5.14
102 103 2.307153 TGGCCAGACCATTAGTCCC 58.693 57.895 0.00 0.00 46.36 4.46
117 118 2.280186 CTATCGTTCGGGCCTGGC 60.280 66.667 12.87 11.05 0.00 4.85
118 119 2.280186 GCTATCGTTCGGGCCTGG 60.280 66.667 12.87 0.00 0.00 4.45
119 120 2.280186 GGCTATCGTTCGGGCCTG 60.280 66.667 4.71 4.71 41.20 4.85
120 121 3.547513 GGGCTATCGTTCGGGCCT 61.548 66.667 0.84 0.00 43.62 5.19
121 122 4.620937 GGGGCTATCGTTCGGGCC 62.621 72.222 0.00 0.00 43.68 5.80
122 123 4.620937 GGGGGCTATCGTTCGGGC 62.621 72.222 0.00 0.00 0.00 6.13
123 124 1.979619 AAAGGGGGCTATCGTTCGGG 61.980 60.000 0.00 0.00 0.00 5.14
124 125 0.107361 AAAAGGGGGCTATCGTTCGG 60.107 55.000 0.00 0.00 0.00 4.30
125 126 1.134491 AGAAAAGGGGGCTATCGTTCG 60.134 52.381 0.00 0.00 0.00 3.95
126 127 2.711978 AGAAAAGGGGGCTATCGTTC 57.288 50.000 0.00 0.00 0.00 3.95
127 128 3.113043 AGTAGAAAAGGGGGCTATCGTT 58.887 45.455 0.00 0.00 0.00 3.85
128 129 2.760581 AGTAGAAAAGGGGGCTATCGT 58.239 47.619 0.00 0.00 0.00 3.73
129 130 3.896272 ACTAGTAGAAAAGGGGGCTATCG 59.104 47.826 3.59 0.00 0.00 2.92
130 131 4.900054 TCACTAGTAGAAAAGGGGGCTATC 59.100 45.833 3.59 0.00 0.00 2.08
131 132 4.892198 TCACTAGTAGAAAAGGGGGCTAT 58.108 43.478 3.59 0.00 0.00 2.97
132 133 4.016851 TCTCACTAGTAGAAAAGGGGGCTA 60.017 45.833 3.59 0.00 0.00 3.93
133 134 3.108376 CTCACTAGTAGAAAAGGGGGCT 58.892 50.000 3.59 0.00 0.00 5.19
134 135 3.105283 TCTCACTAGTAGAAAAGGGGGC 58.895 50.000 3.59 0.00 0.00 5.80
135 136 4.611367 TCTCTCACTAGTAGAAAAGGGGG 58.389 47.826 3.59 0.00 0.00 5.40
136 137 8.364142 CAATATCTCTCACTAGTAGAAAAGGGG 58.636 40.741 3.59 0.00 0.00 4.79
137 138 8.919145 ACAATATCTCTCACTAGTAGAAAAGGG 58.081 37.037 3.59 0.00 0.00 3.95
141 142 9.575868 CCCTACAATATCTCTCACTAGTAGAAA 57.424 37.037 3.59 0.00 31.75 2.52
142 143 8.725256 ACCCTACAATATCTCTCACTAGTAGAA 58.275 37.037 3.59 0.00 31.75 2.10
143 144 8.277720 ACCCTACAATATCTCTCACTAGTAGA 57.722 38.462 3.59 0.00 31.75 2.59
144 145 8.927675 AACCCTACAATATCTCTCACTAGTAG 57.072 38.462 0.00 0.00 0.00 2.57
146 147 8.504409 ACTAACCCTACAATATCTCTCACTAGT 58.496 37.037 0.00 0.00 0.00 2.57
147 148 8.927675 ACTAACCCTACAATATCTCTCACTAG 57.072 38.462 0.00 0.00 0.00 2.57
148 149 9.132923 CAACTAACCCTACAATATCTCTCACTA 57.867 37.037 0.00 0.00 0.00 2.74
149 150 7.070074 CCAACTAACCCTACAATATCTCTCACT 59.930 40.741 0.00 0.00 0.00 3.41
150 151 7.210873 CCAACTAACCCTACAATATCTCTCAC 58.789 42.308 0.00 0.00 0.00 3.51
151 152 6.183360 GCCAACTAACCCTACAATATCTCTCA 60.183 42.308 0.00 0.00 0.00 3.27
152 153 6.042208 AGCCAACTAACCCTACAATATCTCTC 59.958 42.308 0.00 0.00 0.00 3.20
153 154 5.905913 AGCCAACTAACCCTACAATATCTCT 59.094 40.000 0.00 0.00 0.00 3.10
154 155 6.176014 AGCCAACTAACCCTACAATATCTC 57.824 41.667 0.00 0.00 0.00 2.75
155 156 6.069615 ACAAGCCAACTAACCCTACAATATCT 60.070 38.462 0.00 0.00 0.00 1.98
156 157 6.120220 ACAAGCCAACTAACCCTACAATATC 58.880 40.000 0.00 0.00 0.00 1.63
157 158 6.074698 ACAAGCCAACTAACCCTACAATAT 57.925 37.500 0.00 0.00 0.00 1.28
158 159 5.013287 TGACAAGCCAACTAACCCTACAATA 59.987 40.000 0.00 0.00 0.00 1.90
159 160 4.202524 TGACAAGCCAACTAACCCTACAAT 60.203 41.667 0.00 0.00 0.00 2.71
160 161 3.136809 TGACAAGCCAACTAACCCTACAA 59.863 43.478 0.00 0.00 0.00 2.41
161 162 2.706723 TGACAAGCCAACTAACCCTACA 59.293 45.455 0.00 0.00 0.00 2.74
162 163 3.072211 GTGACAAGCCAACTAACCCTAC 58.928 50.000 0.00 0.00 0.00 3.18
163 164 2.289195 CGTGACAAGCCAACTAACCCTA 60.289 50.000 0.00 0.00 0.00 3.53
164 165 1.542547 CGTGACAAGCCAACTAACCCT 60.543 52.381 0.00 0.00 0.00 4.34
165 166 0.872388 CGTGACAAGCCAACTAACCC 59.128 55.000 0.00 0.00 0.00 4.11
166 167 0.237498 GCGTGACAAGCCAACTAACC 59.763 55.000 1.44 0.00 0.00 2.85
167 168 0.941542 TGCGTGACAAGCCAACTAAC 59.058 50.000 10.95 0.00 0.00 2.34
168 169 1.669604 TTGCGTGACAAGCCAACTAA 58.330 45.000 10.95 0.00 33.24 2.24
169 170 3.388272 TTGCGTGACAAGCCAACTA 57.612 47.368 10.95 0.00 33.24 2.24
170 171 4.234019 TTGCGTGACAAGCCAACT 57.766 50.000 10.95 0.00 33.24 3.16
177 178 1.092921 GGTGGTGTCTTGCGTGACAA 61.093 55.000 12.20 0.00 46.77 3.18
178 179 1.522806 GGTGGTGTCTTGCGTGACA 60.523 57.895 7.39 7.39 43.72 3.58
179 180 1.227556 AGGTGGTGTCTTGCGTGAC 60.228 57.895 2.43 2.43 37.47 3.67
180 181 1.227527 CAGGTGGTGTCTTGCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
181 182 0.249699 TACAGGTGGTGTCTTGCGTG 60.250 55.000 0.00 0.00 40.94 5.34
182 183 0.685097 ATACAGGTGGTGTCTTGCGT 59.315 50.000 0.00 0.00 40.94 5.24
183 184 2.665649 TATACAGGTGGTGTCTTGCG 57.334 50.000 0.00 0.00 40.94 4.85
184 185 5.049405 GCAATATATACAGGTGGTGTCTTGC 60.049 44.000 0.00 0.00 40.94 4.01
185 186 6.054941 TGCAATATATACAGGTGGTGTCTTG 58.945 40.000 0.00 0.00 40.94 3.02
186 187 6.247229 TGCAATATATACAGGTGGTGTCTT 57.753 37.500 0.00 0.00 40.94 3.01
187 188 5.887214 TGCAATATATACAGGTGGTGTCT 57.113 39.130 0.00 0.00 40.94 3.41
188 189 6.128553 CGAATGCAATATATACAGGTGGTGTC 60.129 42.308 0.00 0.00 40.94 3.67
189 190 5.700832 CGAATGCAATATATACAGGTGGTGT 59.299 40.000 0.00 0.00 43.86 4.16
190 191 5.700832 ACGAATGCAATATATACAGGTGGTG 59.299 40.000 0.00 0.00 0.00 4.17
191 192 5.865085 ACGAATGCAATATATACAGGTGGT 58.135 37.500 0.00 0.00 0.00 4.16
192 193 5.351465 GGACGAATGCAATATATACAGGTGG 59.649 44.000 0.00 0.00 0.00 4.61
193 194 5.351465 GGGACGAATGCAATATATACAGGTG 59.649 44.000 0.00 0.00 0.00 4.00
194 195 5.488341 GGGACGAATGCAATATATACAGGT 58.512 41.667 0.00 0.00 0.00 4.00
213 214 0.947660 GTTCTTCCACGAACCGGGAC 60.948 60.000 6.32 0.00 37.82 4.46
214 215 1.368579 GTTCTTCCACGAACCGGGA 59.631 57.895 6.32 0.00 37.82 5.14
215 216 3.961729 GTTCTTCCACGAACCGGG 58.038 61.111 6.32 0.00 37.82 5.73
219 220 0.947660 GTCCCGGTTCTTCCACGAAC 60.948 60.000 0.00 0.00 41.91 3.95
220 221 1.117142 AGTCCCGGTTCTTCCACGAA 61.117 55.000 0.00 0.00 35.57 3.85
221 222 0.251297 TAGTCCCGGTTCTTCCACGA 60.251 55.000 0.00 0.00 35.57 4.35
222 223 0.604578 TTAGTCCCGGTTCTTCCACG 59.395 55.000 0.00 0.00 35.57 4.94
223 224 2.629051 CATTAGTCCCGGTTCTTCCAC 58.371 52.381 0.00 0.00 35.57 4.02
224 225 1.557832 CCATTAGTCCCGGTTCTTCCA 59.442 52.381 0.00 0.00 35.57 3.53
225 226 1.134189 CCCATTAGTCCCGGTTCTTCC 60.134 57.143 0.00 0.00 0.00 3.46
226 227 1.746171 GCCCATTAGTCCCGGTTCTTC 60.746 57.143 0.00 0.00 0.00 2.87
227 228 0.255033 GCCCATTAGTCCCGGTTCTT 59.745 55.000 0.00 0.00 0.00 2.52
228 229 0.620700 AGCCCATTAGTCCCGGTTCT 60.621 55.000 0.00 0.15 0.00 3.01
229 230 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
230 231 1.607612 CAGCCCATTAGTCCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
231 232 2.375345 CCAGCCCATTAGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
232 233 2.510906 CCAGCCCATTAGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
233 234 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
234 235 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
235 236 1.152881 CTGGCCAGCCCATTAGTCC 60.153 63.158 22.33 0.00 44.33 3.85
236 237 1.152881 CCTGGCCAGCCCATTAGTC 60.153 63.158 28.39 0.00 44.33 2.59
237 238 3.010144 CCTGGCCAGCCCATTAGT 58.990 61.111 28.39 0.00 44.33 2.24
238 239 2.520260 GCCTGGCCAGCCCATTAG 60.520 66.667 28.39 12.86 44.33 1.73
249 250 2.280186 CTATCGTTCGGGCCTGGC 60.280 66.667 12.87 11.05 0.00 4.85
250 251 2.280186 GCTATCGTTCGGGCCTGG 60.280 66.667 12.87 0.00 0.00 4.45
251 252 2.280186 GGCTATCGTTCGGGCCTG 60.280 66.667 4.71 4.71 41.20 4.85
252 253 3.547513 GGGCTATCGTTCGGGCCT 61.548 66.667 0.84 0.00 43.62 5.19
253 254 4.620937 GGGGCTATCGTTCGGGCC 62.621 72.222 0.00 0.00 43.68 5.80
254 255 4.620937 GGGGGCTATCGTTCGGGC 62.621 72.222 0.00 0.00 0.00 6.13
255 256 1.979619 AAAGGGGGCTATCGTTCGGG 61.980 60.000 0.00 0.00 0.00 5.14
256 257 0.107361 AAAAGGGGGCTATCGTTCGG 60.107 55.000 0.00 0.00 0.00 4.30
257 258 1.746470 AAAAAGGGGGCTATCGTTCG 58.254 50.000 0.00 0.00 0.00 3.95
274 275 9.710818 ACCCTACAATATCTCTCACTAGTAAAA 57.289 33.333 0.00 0.00 0.00 1.52
275 276 9.710818 AACCCTACAATATCTCTCACTAGTAAA 57.289 33.333 0.00 0.00 0.00 2.01
278 279 8.504409 ACTAACCCTACAATATCTCTCACTAGT 58.496 37.037 0.00 0.00 0.00 2.57
279 280 8.927675 ACTAACCCTACAATATCTCTCACTAG 57.072 38.462 0.00 0.00 0.00 2.57
280 281 9.132923 CAACTAACCCTACAATATCTCTCACTA 57.867 37.037 0.00 0.00 0.00 2.74
281 282 7.070074 CCAACTAACCCTACAATATCTCTCACT 59.930 40.741 0.00 0.00 0.00 3.41
282 283 7.210873 CCAACTAACCCTACAATATCTCTCAC 58.789 42.308 0.00 0.00 0.00 3.51
283 284 6.183360 GCCAACTAACCCTACAATATCTCTCA 60.183 42.308 0.00 0.00 0.00 3.27
284 285 6.042208 AGCCAACTAACCCTACAATATCTCTC 59.958 42.308 0.00 0.00 0.00 3.20
285 286 5.905913 AGCCAACTAACCCTACAATATCTCT 59.094 40.000 0.00 0.00 0.00 3.10
286 287 6.176014 AGCCAACTAACCCTACAATATCTC 57.824 41.667 0.00 0.00 0.00 2.75
287 288 6.157994 TCAAGCCAACTAACCCTACAATATCT 59.842 38.462 0.00 0.00 0.00 1.98
288 289 6.260271 GTCAAGCCAACTAACCCTACAATATC 59.740 42.308 0.00 0.00 0.00 1.63
289 290 6.120220 GTCAAGCCAACTAACCCTACAATAT 58.880 40.000 0.00 0.00 0.00 1.28
290 291 5.013287 TGTCAAGCCAACTAACCCTACAATA 59.987 40.000 0.00 0.00 0.00 1.90
291 292 4.202524 TGTCAAGCCAACTAACCCTACAAT 60.203 41.667 0.00 0.00 0.00 2.71
292 293 3.136809 TGTCAAGCCAACTAACCCTACAA 59.863 43.478 0.00 0.00 0.00 2.41
293 294 2.706723 TGTCAAGCCAACTAACCCTACA 59.293 45.455 0.00 0.00 0.00 2.74
294 295 3.072211 GTGTCAAGCCAACTAACCCTAC 58.928 50.000 0.00 0.00 0.00 3.18
295 296 2.289195 CGTGTCAAGCCAACTAACCCTA 60.289 50.000 0.00 0.00 0.00 3.53
296 297 1.542547 CGTGTCAAGCCAACTAACCCT 60.543 52.381 0.00 0.00 0.00 4.34
297 298 0.872388 CGTGTCAAGCCAACTAACCC 59.128 55.000 0.00 0.00 0.00 4.11
298 299 0.237498 GCGTGTCAAGCCAACTAACC 59.763 55.000 0.00 0.00 0.00 2.85
299 300 0.941542 TGCGTGTCAAGCCAACTAAC 59.058 50.000 8.33 0.00 0.00 2.34
300 301 1.601903 CTTGCGTGTCAAGCCAACTAA 59.398 47.619 8.33 0.00 44.85 2.24
301 302 1.225855 CTTGCGTGTCAAGCCAACTA 58.774 50.000 8.33 0.00 44.85 2.24
302 303 2.024918 CTTGCGTGTCAAGCCAACT 58.975 52.632 8.33 0.00 44.85 3.16
303 304 4.614673 CTTGCGTGTCAAGCCAAC 57.385 55.556 8.33 0.00 44.85 3.77
309 310 1.436195 GCTGGTGTCTTGCGTGTCAA 61.436 55.000 0.00 0.00 0.00 3.18
310 311 1.887242 GCTGGTGTCTTGCGTGTCA 60.887 57.895 0.00 0.00 0.00 3.58
311 312 1.595382 AGCTGGTGTCTTGCGTGTC 60.595 57.895 0.00 0.00 0.00 3.67
312 313 1.889105 CAGCTGGTGTCTTGCGTGT 60.889 57.895 5.57 0.00 0.00 4.49
313 314 0.599991 TACAGCTGGTGTCTTGCGTG 60.600 55.000 19.93 0.00 40.94 5.34
314 315 0.321671 ATACAGCTGGTGTCTTGCGT 59.678 50.000 19.93 0.00 40.94 5.24
315 316 2.293677 TATACAGCTGGTGTCTTGCG 57.706 50.000 19.93 0.00 40.94 4.85
316 317 5.760253 ACAATATATACAGCTGGTGTCTTGC 59.240 40.000 19.93 0.00 40.94 4.01
317 318 8.765219 GTTACAATATATACAGCTGGTGTCTTG 58.235 37.037 19.93 15.36 40.94 3.02
318 319 7.931948 GGTTACAATATATACAGCTGGTGTCTT 59.068 37.037 19.93 8.07 40.94 3.01
319 320 7.442656 GGTTACAATATATACAGCTGGTGTCT 58.557 38.462 19.93 9.44 40.94 3.41
320 321 6.365247 CGGTTACAATATATACAGCTGGTGTC 59.635 42.308 19.93 0.00 40.94 3.67
321 322 6.041182 TCGGTTACAATATATACAGCTGGTGT 59.959 38.462 19.93 17.32 43.86 4.16
322 323 6.365247 GTCGGTTACAATATATACAGCTGGTG 59.635 42.308 19.93 5.12 0.00 4.17
323 324 6.267014 AGTCGGTTACAATATATACAGCTGGT 59.733 38.462 19.93 8.94 0.00 4.00
324 325 6.688578 AGTCGGTTACAATATATACAGCTGG 58.311 40.000 19.93 0.00 0.00 4.85
325 326 7.539022 CAGAGTCGGTTACAATATATACAGCTG 59.461 40.741 13.48 13.48 0.00 4.24
326 327 7.447545 TCAGAGTCGGTTACAATATATACAGCT 59.552 37.037 0.00 0.00 0.00 4.24
327 328 7.591165 TCAGAGTCGGTTACAATATATACAGC 58.409 38.462 0.00 0.00 0.00 4.40
328 329 9.561270 CATCAGAGTCGGTTACAATATATACAG 57.439 37.037 0.00 0.00 0.00 2.74
329 330 8.520351 CCATCAGAGTCGGTTACAATATATACA 58.480 37.037 0.00 0.00 0.00 2.29
330 331 8.737175 TCCATCAGAGTCGGTTACAATATATAC 58.263 37.037 0.00 0.00 0.00 1.47
331 332 8.873186 TCCATCAGAGTCGGTTACAATATATA 57.127 34.615 0.00 0.00 0.00 0.86
332 333 7.776618 TCCATCAGAGTCGGTTACAATATAT 57.223 36.000 0.00 0.00 0.00 0.86
333 334 7.591421 TTCCATCAGAGTCGGTTACAATATA 57.409 36.000 0.00 0.00 0.00 0.86
334 335 6.479972 TTCCATCAGAGTCGGTTACAATAT 57.520 37.500 0.00 0.00 0.00 1.28
335 336 5.925506 TTCCATCAGAGTCGGTTACAATA 57.074 39.130 0.00 0.00 0.00 1.90
336 337 4.819105 TTCCATCAGAGTCGGTTACAAT 57.181 40.909 0.00 0.00 0.00 2.71
337 338 4.819105 ATTCCATCAGAGTCGGTTACAA 57.181 40.909 0.00 0.00 0.00 2.41
338 339 4.707934 TGTATTCCATCAGAGTCGGTTACA 59.292 41.667 0.00 0.00 0.00 2.41
339 340 5.258456 TGTATTCCATCAGAGTCGGTTAC 57.742 43.478 0.00 0.00 0.00 2.50
340 341 5.925506 TTGTATTCCATCAGAGTCGGTTA 57.074 39.130 0.00 0.00 0.00 2.85
341 342 4.819105 TTGTATTCCATCAGAGTCGGTT 57.181 40.909 0.00 0.00 0.00 4.44
342 343 4.405680 TCATTGTATTCCATCAGAGTCGGT 59.594 41.667 0.00 0.00 0.00 4.69
343 344 4.948847 TCATTGTATTCCATCAGAGTCGG 58.051 43.478 0.00 0.00 0.00 4.79
344 345 7.350467 CAATTCATTGTATTCCATCAGAGTCG 58.650 38.462 0.00 0.00 33.22 4.18
345 346 7.137426 GCAATTCATTGTATTCCATCAGAGTC 58.863 38.462 1.59 0.00 39.88 3.36
346 347 6.604396 TGCAATTCATTGTATTCCATCAGAGT 59.396 34.615 1.59 0.00 39.88 3.24
347 348 7.034685 TGCAATTCATTGTATTCCATCAGAG 57.965 36.000 1.59 0.00 39.88 3.35
348 349 7.255695 GGATGCAATTCATTGTATTCCATCAGA 60.256 37.037 16.87 0.00 41.99 3.27
349 350 6.866770 GGATGCAATTCATTGTATTCCATCAG 59.133 38.462 16.87 0.00 41.99 2.90
350 351 6.551975 AGGATGCAATTCATTGTATTCCATCA 59.448 34.615 16.87 2.60 41.99 3.07
351 352 6.989659 AGGATGCAATTCATTGTATTCCATC 58.010 36.000 10.05 10.05 41.99 3.51
352 353 6.989155 AGGATGCAATTCATTGTATTCCAT 57.011 33.333 15.01 0.00 41.99 3.41
353 354 9.234827 CTATAGGATGCAATTCATTGTATTCCA 57.765 33.333 15.01 2.42 41.99 3.53
354 355 9.236006 ACTATAGGATGCAATTCATTGTATTCC 57.764 33.333 4.43 7.44 41.99 3.01
358 359 9.494271 GAAGACTATAGGATGCAATTCATTGTA 57.506 33.333 4.43 0.00 39.88 2.41
359 360 8.216423 AGAAGACTATAGGATGCAATTCATTGT 58.784 33.333 4.43 0.00 39.88 2.71
360 361 8.618702 AGAAGACTATAGGATGCAATTCATTG 57.381 34.615 4.43 0.00 40.66 2.82
361 362 9.717942 GTAGAAGACTATAGGATGCAATTCATT 57.282 33.333 4.43 0.00 35.05 2.57
362 363 8.874156 TGTAGAAGACTATAGGATGCAATTCAT 58.126 33.333 4.43 0.00 38.32 2.57
363 364 8.250143 TGTAGAAGACTATAGGATGCAATTCA 57.750 34.615 4.43 0.00 0.00 2.57
364 365 9.717942 AATGTAGAAGACTATAGGATGCAATTC 57.282 33.333 4.43 0.00 0.00 2.17
365 366 9.499479 CAATGTAGAAGACTATAGGATGCAATT 57.501 33.333 4.43 0.00 0.00 2.32
366 367 8.654997 ACAATGTAGAAGACTATAGGATGCAAT 58.345 33.333 4.43 0.00 0.00 3.56
367 368 7.928167 CACAATGTAGAAGACTATAGGATGCAA 59.072 37.037 4.43 0.00 0.00 4.08
368 369 7.069950 ACACAATGTAGAAGACTATAGGATGCA 59.930 37.037 4.43 0.00 0.00 3.96
369 370 7.437748 ACACAATGTAGAAGACTATAGGATGC 58.562 38.462 4.43 0.00 0.00 3.91
370 371 7.805542 CGACACAATGTAGAAGACTATAGGATG 59.194 40.741 4.43 0.00 0.00 3.51
371 372 7.720074 TCGACACAATGTAGAAGACTATAGGAT 59.280 37.037 4.43 0.00 29.16 3.24
372 373 7.052248 TCGACACAATGTAGAAGACTATAGGA 58.948 38.462 4.43 0.00 29.16 2.94
373 374 7.260558 TCGACACAATGTAGAAGACTATAGG 57.739 40.000 4.43 0.00 29.16 2.57
374 375 7.226918 TCCTCGACACAATGTAGAAGACTATAG 59.773 40.741 0.00 0.00 31.82 1.31
375 376 7.052248 TCCTCGACACAATGTAGAAGACTATA 58.948 38.462 0.00 0.00 31.82 1.31
376 377 5.886474 TCCTCGACACAATGTAGAAGACTAT 59.114 40.000 0.00 0.00 31.82 2.12
377 378 5.250982 TCCTCGACACAATGTAGAAGACTA 58.749 41.667 0.00 0.00 31.82 2.59
378 379 4.079970 TCCTCGACACAATGTAGAAGACT 58.920 43.478 0.00 0.00 31.82 3.24
379 380 4.436242 TCCTCGACACAATGTAGAAGAC 57.564 45.455 0.00 0.00 31.82 3.01
380 381 4.618460 GCTTCCTCGACACAATGTAGAAGA 60.618 45.833 0.00 2.07 31.82 2.87
381 382 3.614616 GCTTCCTCGACACAATGTAGAAG 59.385 47.826 0.00 0.00 31.82 2.85
382 383 3.006430 TGCTTCCTCGACACAATGTAGAA 59.994 43.478 0.00 0.00 31.82 2.10
383 384 2.560981 TGCTTCCTCGACACAATGTAGA 59.439 45.455 0.00 0.00 31.37 2.59
384 385 2.926200 CTGCTTCCTCGACACAATGTAG 59.074 50.000 0.00 0.00 0.00 2.74
385 386 2.299013 ACTGCTTCCTCGACACAATGTA 59.701 45.455 0.00 0.00 0.00 2.29
386 387 1.070758 ACTGCTTCCTCGACACAATGT 59.929 47.619 0.00 0.00 0.00 2.71
387 388 1.462283 CACTGCTTCCTCGACACAATG 59.538 52.381 0.00 0.00 0.00 2.82
388 389 1.609061 CCACTGCTTCCTCGACACAAT 60.609 52.381 0.00 0.00 0.00 2.71
389 390 0.249868 CCACTGCTTCCTCGACACAA 60.250 55.000 0.00 0.00 0.00 3.33
390 391 1.367471 CCACTGCTTCCTCGACACA 59.633 57.895 0.00 0.00 0.00 3.72
391 392 2.029844 GCCACTGCTTCCTCGACAC 61.030 63.158 0.00 0.00 33.53 3.67
392 393 2.343758 GCCACTGCTTCCTCGACA 59.656 61.111 0.00 0.00 33.53 4.35
393 394 2.029844 GTGCCACTGCTTCCTCGAC 61.030 63.158 0.00 0.00 38.71 4.20
394 395 1.830587 ATGTGCCACTGCTTCCTCGA 61.831 55.000 0.00 0.00 38.71 4.04
458 459 6.090129 TGCTTGTGCTTTATTTTTATCGGTC 58.910 36.000 0.00 0.00 40.48 4.79
484 485 8.025445 GTGAAACATCAAGCTCAAAACTATGAT 58.975 33.333 0.00 0.00 36.32 2.45
485 486 7.362662 GTGAAACATCAAGCTCAAAACTATGA 58.637 34.615 0.00 0.00 36.32 2.15
498 499 0.785708 GCGCGTCGTGAAACATCAAG 60.786 55.000 10.58 0.00 35.74 3.02
542 543 4.399618 TGCTTCAGAGTAGGAGTGATACAC 59.600 45.833 0.00 0.00 34.10 2.90
563 564 2.860735 CTCGTCTACTTGCTATTGGTGC 59.139 50.000 0.00 0.00 0.00 5.01
565 566 3.362706 TCCTCGTCTACTTGCTATTGGT 58.637 45.455 0.00 0.00 0.00 3.67
572 573 1.404843 AGGGATCCTCGTCTACTTGC 58.595 55.000 12.58 0.00 0.00 4.01
581 582 5.070580 AGGAAGTATTTACAAGGGATCCTCG 59.929 44.000 12.58 2.82 30.89 4.63
588 589 5.731591 AGACGAAGGAAGTATTTACAAGGG 58.268 41.667 0.00 0.00 0.00 3.95
626 635 2.526888 TCTACTCTCACCGTCCCAAT 57.473 50.000 0.00 0.00 0.00 3.16
750 760 9.983024 TCCAATGTTAAATTAGATGGGTCTTAA 57.017 29.630 0.00 0.00 35.87 1.85
751 761 9.403583 GTCCAATGTTAAATTAGATGGGTCTTA 57.596 33.333 0.00 0.00 35.87 2.10
768 778 3.333680 ACCCTTCATACTGGTCCAATGTT 59.666 43.478 3.90 0.00 0.00 2.71
769 779 2.919602 ACCCTTCATACTGGTCCAATGT 59.080 45.455 3.90 0.00 0.00 2.71
770 780 3.652057 ACCCTTCATACTGGTCCAATG 57.348 47.619 0.00 0.00 0.00 2.82
771 781 4.104738 CCATACCCTTCATACTGGTCCAAT 59.895 45.833 0.00 0.00 33.55 3.16
772 782 3.458118 CCATACCCTTCATACTGGTCCAA 59.542 47.826 0.00 0.00 33.55 3.53
773 783 3.045634 CCATACCCTTCATACTGGTCCA 58.954 50.000 0.00 0.00 33.55 4.02
774 784 2.224548 GCCATACCCTTCATACTGGTCC 60.225 54.545 0.00 0.00 33.55 4.46
775 785 2.706190 AGCCATACCCTTCATACTGGTC 59.294 50.000 0.00 0.00 33.55 4.02
776 786 2.439507 CAGCCATACCCTTCATACTGGT 59.560 50.000 0.00 0.00 36.15 4.00
777 787 2.224621 CCAGCCATACCCTTCATACTGG 60.225 54.545 0.00 0.00 37.69 4.00
778 788 2.224621 CCCAGCCATACCCTTCATACTG 60.225 54.545 0.00 0.00 0.00 2.74
779 789 2.057922 CCCAGCCATACCCTTCATACT 58.942 52.381 0.00 0.00 0.00 2.12
780 790 1.774856 ACCCAGCCATACCCTTCATAC 59.225 52.381 0.00 0.00 0.00 2.39
781 791 2.054799 GACCCAGCCATACCCTTCATA 58.945 52.381 0.00 0.00 0.00 2.15
782 792 0.846693 GACCCAGCCATACCCTTCAT 59.153 55.000 0.00 0.00 0.00 2.57
783 793 0.548926 TGACCCAGCCATACCCTTCA 60.549 55.000 0.00 0.00 0.00 3.02
784 794 0.846693 ATGACCCAGCCATACCCTTC 59.153 55.000 0.00 0.00 0.00 3.46
785 795 2.206322 TATGACCCAGCCATACCCTT 57.794 50.000 0.00 0.00 0.00 3.95
786 796 2.206322 TTATGACCCAGCCATACCCT 57.794 50.000 0.00 0.00 0.00 4.34
787 797 3.525800 AATTATGACCCAGCCATACCC 57.474 47.619 0.00 0.00 0.00 3.69
788 798 4.729868 AGAAATTATGACCCAGCCATACC 58.270 43.478 0.00 0.00 0.00 2.73
789 799 5.010012 CCAAGAAATTATGACCCAGCCATAC 59.990 44.000 0.00 0.00 0.00 2.39
790 800 5.139727 CCAAGAAATTATGACCCAGCCATA 58.860 41.667 0.00 0.00 0.00 2.74
791 801 3.962718 CCAAGAAATTATGACCCAGCCAT 59.037 43.478 0.00 0.00 0.00 4.40
792 802 3.364549 CCAAGAAATTATGACCCAGCCA 58.635 45.455 0.00 0.00 0.00 4.75
793 803 2.101415 GCCAAGAAATTATGACCCAGCC 59.899 50.000 0.00 0.00 0.00 4.85
794 804 2.101415 GGCCAAGAAATTATGACCCAGC 59.899 50.000 0.00 0.00 0.00 4.85
795 805 2.358898 CGGCCAAGAAATTATGACCCAG 59.641 50.000 2.24 0.00 0.00 4.45
796 806 2.374184 CGGCCAAGAAATTATGACCCA 58.626 47.619 2.24 0.00 0.00 4.51
797 807 1.681264 CCGGCCAAGAAATTATGACCC 59.319 52.381 2.24 0.00 0.00 4.46
798 808 1.067060 GCCGGCCAAGAAATTATGACC 59.933 52.381 18.11 0.00 0.00 4.02
799 809 1.067060 GGCCGGCCAAGAAATTATGAC 59.933 52.381 40.73 7.27 35.81 3.06
800 810 1.341482 TGGCCGGCCAAGAAATTATGA 60.341 47.619 45.50 18.42 44.12 2.15
801 811 1.110442 TGGCCGGCCAAGAAATTATG 58.890 50.000 45.50 0.00 44.12 1.90
802 812 3.605946 TGGCCGGCCAAGAAATTAT 57.394 47.368 45.50 0.00 44.12 1.28
882 893 5.066375 GGTTTCTTTCTTGCCTGCAAAATTT 59.934 36.000 6.00 0.00 35.33 1.82
883 894 4.576053 GGTTTCTTTCTTGCCTGCAAAATT 59.424 37.500 6.00 0.00 35.33 1.82
884 895 4.129380 GGTTTCTTTCTTGCCTGCAAAAT 58.871 39.130 6.00 0.00 35.33 1.82
997 1009 2.027625 GAGTACAGTGTGCCCGTGC 61.028 63.158 5.88 0.00 38.26 5.34
1042 1054 4.134187 GTGCCGCGTGTGATGTCG 62.134 66.667 4.92 0.00 0.00 4.35
1047 1059 4.961511 GACAGGTGCCGCGTGTGA 62.962 66.667 8.50 0.00 45.05 3.58
1051 1063 4.329545 AATGGACAGGTGCCGCGT 62.330 61.111 4.92 0.00 0.00 6.01
1075 1122 1.225376 CCGTCGCTCGCTCTCTCTAT 61.225 60.000 0.00 0.00 38.35 1.98
1172 1222 1.804326 CGAAGGCAAGTACGTCGGG 60.804 63.158 0.00 0.00 36.45 5.14
1206 1256 1.075542 TGAAGCTACGCATTTGGACG 58.924 50.000 0.00 0.00 0.00 4.79
1299 1377 4.794439 TGATGCCGACCTCGTGCG 62.794 66.667 0.00 0.00 38.01 5.34
1300 1378 2.887568 CTGATGCCGACCTCGTGC 60.888 66.667 0.00 0.00 37.74 5.34
1301 1379 2.021068 ATCCTGATGCCGACCTCGTG 62.021 60.000 0.00 0.00 37.74 4.35
1302 1380 1.330655 AATCCTGATGCCGACCTCGT 61.331 55.000 0.00 0.00 37.74 4.18
1310 1392 1.307097 GTGCAGAGAATCCTGATGCC 58.693 55.000 0.00 0.00 36.29 4.40
1405 1487 5.112220 TGATTATCAAATTCTGGCATCGC 57.888 39.130 0.00 0.00 0.00 4.58
1406 1488 5.335426 CCCTGATTATCAAATTCTGGCATCG 60.335 44.000 0.00 0.00 0.00 3.84
1408 1490 4.282703 GCCCTGATTATCAAATTCTGGCAT 59.717 41.667 0.00 0.00 34.61 4.40
1409 1491 3.638160 GCCCTGATTATCAAATTCTGGCA 59.362 43.478 0.00 0.00 34.61 4.92
1410 1492 3.638160 TGCCCTGATTATCAAATTCTGGC 59.362 43.478 0.00 3.11 34.85 4.85
1411 1493 5.779922 CATGCCCTGATTATCAAATTCTGG 58.220 41.667 0.00 0.00 0.00 3.86
1412 1494 5.010719 AGCATGCCCTGATTATCAAATTCTG 59.989 40.000 15.66 0.00 0.00 3.02
1520 1607 9.296400 GAAAGGAAGACGATAGATAGATTATGC 57.704 37.037 0.00 0.00 41.38 3.14
1521 1608 9.497030 CGAAAGGAAGACGATAGATAGATTATG 57.503 37.037 0.00 0.00 41.38 1.90
1522 1609 8.185505 GCGAAAGGAAGACGATAGATAGATTAT 58.814 37.037 0.00 0.00 41.38 1.28
1523 1610 7.390996 AGCGAAAGGAAGACGATAGATAGATTA 59.609 37.037 0.00 0.00 41.38 1.75
1564 1654 5.332883 GCACATAGCTTCACATCTTATCGTG 60.333 44.000 0.00 0.00 41.15 4.35
1581 1772 2.032290 CAGTTCGCCATGATGCACATAG 60.032 50.000 0.00 0.00 37.46 2.23
1585 1776 0.523072 AACAGTTCGCCATGATGCAC 59.477 50.000 0.00 0.00 0.00 4.57
1616 2372 4.308458 TCCACCACGCTGGGAACG 62.308 66.667 8.57 0.00 43.37 3.95
1787 2553 2.718073 GGCGAAGGAGAAGCGGGTA 61.718 63.158 0.00 0.00 0.00 3.69
1874 2640 0.982673 CGATCCTGACGACGTTTGAC 59.017 55.000 0.13 0.00 0.00 3.18
1875 2641 0.109458 CCGATCCTGACGACGTTTGA 60.109 55.000 0.13 0.00 0.00 2.69
1877 2643 1.214589 CCCGATCCTGACGACGTTT 59.785 57.895 0.13 0.00 0.00 3.60
1878 2644 2.882876 CCCGATCCTGACGACGTT 59.117 61.111 0.13 0.00 0.00 3.99
1968 2734 1.086696 TGCTCGTTGGATGCTTTAGC 58.913 50.000 0.00 0.00 42.50 3.09
1975 2774 2.988493 CAACCAATTTGCTCGTTGGATG 59.012 45.455 17.48 13.21 46.15 3.51
1981 2780 2.610232 GCCAATCAACCAATTTGCTCGT 60.610 45.455 0.00 0.00 34.88 4.18
1984 2783 1.338011 CCGCCAATCAACCAATTTGCT 60.338 47.619 0.00 0.00 34.88 3.91
1994 2793 3.369400 CAACCGGCCGCCAATCAA 61.369 61.111 22.85 0.00 0.00 2.57
2105 2909 3.417224 CCGAGGTGTCGTCGTCGA 61.417 66.667 16.27 0.00 45.30 4.20
2121 2926 0.183492 TAGCAGGGGCATGTGATTCC 59.817 55.000 0.00 0.00 44.61 3.01
2130 2935 3.117550 ACATCACATTATTAGCAGGGGCA 60.118 43.478 0.00 0.00 44.61 5.36
2160 2975 0.320771 AGCATTCGAGCCGACAACTT 60.321 50.000 0.00 0.00 34.89 2.66
2176 2991 1.185618 ACTAGAACGTCAGGCCAGCA 61.186 55.000 5.01 0.00 0.00 4.41
2187 3010 3.243434 ACAGACTGACAACCACTAGAACG 60.243 47.826 10.08 0.00 0.00 3.95
2241 3064 0.246635 AGCCACGTTAGATCGCACTT 59.753 50.000 0.00 0.00 0.00 3.16
2425 3254 3.084786 AGCCTCTTACCTGCAATTGTTC 58.915 45.455 7.40 0.00 0.00 3.18
2432 3261 0.840288 TTCCCAGCCTCTTACCTGCA 60.840 55.000 0.00 0.00 0.00 4.41
2521 3350 4.077188 GCACTTGTCGCGCAGGTC 62.077 66.667 8.75 7.17 35.03 3.85
2560 3389 9.476202 TCATTAGCGACTACGTAGTATAGTAAA 57.524 33.333 27.44 16.51 44.56 2.01
2562 3391 8.916654 GTTCATTAGCGACTACGTAGTATAGTA 58.083 37.037 27.44 13.83 44.56 1.82
2563 3392 7.655328 AGTTCATTAGCGACTACGTAGTATAGT 59.345 37.037 27.44 14.32 44.56 2.12
2564 3393 8.016497 AGTTCATTAGCGACTACGTAGTATAG 57.984 38.462 27.44 20.97 44.56 1.31
2565 3394 7.953158 AGTTCATTAGCGACTACGTAGTATA 57.047 36.000 27.44 17.18 44.56 1.47
2566 3395 6.857777 AGTTCATTAGCGACTACGTAGTAT 57.142 37.500 27.44 18.13 44.56 2.12
2571 3400 4.387862 CCAAAAGTTCATTAGCGACTACGT 59.612 41.667 0.00 0.00 41.98 3.57
2572 3401 4.387862 ACCAAAAGTTCATTAGCGACTACG 59.612 41.667 0.00 0.00 42.93 3.51
2593 3422 2.226912 CCTAGACGGAGATCGATTGACC 59.773 54.545 0.00 2.94 42.43 4.02
2678 3507 2.908940 GGAATGCCTCCGCCATGG 60.909 66.667 7.63 7.63 33.37 3.66
2691 3520 0.034089 CCTTCCGGGAGCTTTGGAAT 60.034 55.000 3.32 0.00 40.76 3.01
2738 3583 2.200373 TCAGACTCTCGTGATGTGGA 57.800 50.000 0.00 0.00 0.00 4.02
2739 3584 2.873609 CTTCAGACTCTCGTGATGTGG 58.126 52.381 0.00 0.00 0.00 4.17
2742 3587 2.937469 AGCTTCAGACTCTCGTGATG 57.063 50.000 0.00 0.00 0.00 3.07
2743 3588 3.616219 AGTAGCTTCAGACTCTCGTGAT 58.384 45.455 0.00 0.00 0.00 3.06
2751 3603 5.297278 CCGTCTAACATAGTAGCTTCAGACT 59.703 44.000 0.00 0.00 31.22 3.24
2752 3604 5.296283 TCCGTCTAACATAGTAGCTTCAGAC 59.704 44.000 0.00 0.00 0.00 3.51
2774 3639 2.375173 AATGAACCGTCCGTTAGTCC 57.625 50.000 0.00 0.00 33.74 3.85
2796 3661 6.041511 TGTTTTGATCAATTAATCGCCATGG 58.958 36.000 9.40 7.63 0.00 3.66
2798 3663 6.275335 CCTGTTTTGATCAATTAATCGCCAT 58.725 36.000 9.40 0.00 0.00 4.40
2804 3669 5.104817 CCCAGCCCTGTTTTGATCAATTAAT 60.105 40.000 9.40 0.00 0.00 1.40
2805 3670 4.222588 CCCAGCCCTGTTTTGATCAATTAA 59.777 41.667 9.40 0.00 0.00 1.40
2806 3671 3.768757 CCCAGCCCTGTTTTGATCAATTA 59.231 43.478 9.40 0.00 0.00 1.40
2807 3672 2.568509 CCCAGCCCTGTTTTGATCAATT 59.431 45.455 9.40 0.00 0.00 2.32
2945 3810 2.134287 CCAGGATCGGGATGTCGGT 61.134 63.158 0.00 0.00 0.00 4.69
2974 3839 1.379176 CTCCAGCTCCTCGTCCAGA 60.379 63.158 0.00 0.00 0.00 3.86
3083 3948 3.866582 GGCCCCGTCCATCCAGAG 61.867 72.222 0.00 0.00 0.00 3.35
3121 3986 2.950673 GCGCGTCCATTTTCCACA 59.049 55.556 8.43 0.00 0.00 4.17
3154 4019 0.320771 AGGACAACGATGCCAGTCAC 60.321 55.000 8.40 0.00 32.79 3.67
3161 4026 0.109272 TCACGAGAGGACAACGATGC 60.109 55.000 0.00 0.00 0.00 3.91
3272 4140 8.526681 CGCATTTCTCTCTGCAAAATAAATTAC 58.473 33.333 0.00 0.00 38.30 1.89
3282 4150 3.988379 AAAACGCATTTCTCTCTGCAA 57.012 38.095 0.00 0.00 38.30 4.08
3438 4309 1.200716 GTAGTGAACGTCCGATGGTCA 59.799 52.381 4.10 4.10 0.00 4.02
3464 4335 3.430779 CATCAGCTGCTCGTTCTGA 57.569 52.632 9.47 0.00 40.62 3.27
3475 4346 1.450312 GTTACTGGGCGCATCAGCT 60.450 57.895 23.84 15.69 39.10 4.24
3478 4349 1.305219 GCTTGTTACTGGGCGCATCA 61.305 55.000 10.83 6.07 0.00 3.07
3481 4352 2.671619 GGCTTGTTACTGGGCGCA 60.672 61.111 10.83 2.47 0.00 6.09
3489 4360 0.320697 AGACTCGGTGGGCTTGTTAC 59.679 55.000 0.00 0.00 0.00 2.50
3494 4365 2.581074 GAGTAGACTCGGTGGGCTT 58.419 57.895 0.00 0.00 32.78 4.35
3554 4425 2.247311 GCATTTGCGGTTGTACTCAG 57.753 50.000 0.00 0.00 0.00 3.35
3606 4477 1.978617 CAACAGGTGGGGTGCCATC 60.979 63.158 0.00 0.00 0.00 3.51
3672 4546 2.489073 GGTGGTGAGGTGGATTTCACTT 60.489 50.000 4.82 0.00 45.38 3.16
3691 4565 2.492484 GACATGGACTACGAGAACTGGT 59.508 50.000 0.00 0.00 0.00 4.00
3711 4585 2.038007 AAGCTGAGAGGAGGCCGA 59.962 61.111 0.00 0.00 0.00 5.54
3763 4638 2.280797 TGGGCTCGCACTTGACAC 60.281 61.111 0.00 0.00 0.00 3.67
3771 4648 0.392998 GAAATCTTCCTGGGCTCGCA 60.393 55.000 0.00 0.00 0.00 5.10
3788 4665 0.611714 GAAAGGCTACTCACGGGGAA 59.388 55.000 0.00 0.00 0.00 3.97
3810 4687 2.183300 GCGACCATAGCACGGACA 59.817 61.111 0.00 0.00 34.19 4.02
3928 4805 7.116736 AGGGGTTGAACTAATCGTTGAATTAT 58.883 34.615 0.00 0.00 35.56 1.28
3929 4806 6.478129 AGGGGTTGAACTAATCGTTGAATTA 58.522 36.000 0.00 0.00 35.56 1.40
3930 4807 5.321927 AGGGGTTGAACTAATCGTTGAATT 58.678 37.500 0.00 0.00 35.56 2.17
3948 4825 2.606519 TGTCTAGGCGCAAGGGGT 60.607 61.111 10.83 0.00 38.28 4.95
3964 4841 5.438117 GTCAATTCTATGATGTGCGATGTG 58.562 41.667 0.00 0.00 0.00 3.21
3993 4870 0.445436 CAAAGACTCATGGACGCAGC 59.555 55.000 0.00 0.00 0.00 5.25
4035 4912 0.819259 TGTGGAGGCTTGCTGACAAC 60.819 55.000 0.00 0.00 0.00 3.32
4062 4939 5.386060 TGTGTTTTTATGTGTGTCCCCATA 58.614 37.500 0.00 0.00 0.00 2.74
4063 4940 4.219115 TGTGTTTTTATGTGTGTCCCCAT 58.781 39.130 0.00 0.00 0.00 4.00
4073 4959 4.320935 GCTTCCGTGGATGTGTTTTTATGT 60.321 41.667 4.00 0.00 0.00 2.29
4090 4976 1.275291 TCCAGTAGTTGAAGGCTTCCG 59.725 52.381 23.68 4.35 0.00 4.30
4107 4993 1.890573 GCACTAAAATGCCACCCTCCA 60.891 52.381 0.00 0.00 39.86 3.86
4123 5009 2.700897 GGTATAGATGTCTGTGGGCACT 59.299 50.000 0.00 0.00 0.00 4.40
4163 6481 5.549742 TGGATGCCAAAAGAATTCAGTTT 57.450 34.783 8.44 4.85 0.00 2.66
4171 6506 3.598019 GCATCTTGGATGCCAAAAGAA 57.402 42.857 18.37 0.00 43.44 2.52
4209 6544 0.388520 GTGCCCTCAAAATTCCGCAC 60.389 55.000 0.00 0.00 39.72 5.34
4214 6549 6.808829 TGAATATCATGTGCCCTCAAAATTC 58.191 36.000 0.00 0.00 0.00 2.17
4315 6651 4.021456 TGAAATGACCAACGAGAAGCTCTA 60.021 41.667 0.00 0.00 0.00 2.43
4391 6727 7.393515 GGATCTTGTATCCAAAACAACTTACCT 59.606 37.037 0.00 0.00 38.09 3.08
4392 6728 7.175990 TGGATCTTGTATCCAAAACAACTTACC 59.824 37.037 4.25 0.00 44.54 2.85
4393 6729 8.106247 TGGATCTTGTATCCAAAACAACTTAC 57.894 34.615 4.25 0.00 44.54 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.