Multiple sequence alignment - TraesCS2A01G163800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G163800 chr2A 100.000 3436 0 0 2859 6294 116016866 116013431 0.000000e+00 6346.0
1 TraesCS2A01G163800 chr2A 100.000 2597 0 0 1 2597 116019724 116017128 0.000000e+00 4796.0
2 TraesCS2A01G163800 chr2A 72.187 1431 289 81 3930 5294 726032410 726033797 2.810000e-88 337.0
3 TraesCS2A01G163800 chr2A 90.984 122 11 0 1001 1122 726030005 726030126 1.400000e-36 165.0
4 TraesCS2A01G163800 chr2D 97.013 2678 63 12 2866 5537 114553172 114550506 0.000000e+00 4486.0
5 TraesCS2A01G163800 chr2D 91.027 2307 110 35 326 2597 114555502 114553258 0.000000e+00 3024.0
6 TraesCS2A01G163800 chr2D 93.028 502 33 2 5686 6185 48329853 48329352 0.000000e+00 732.0
7 TraesCS2A01G163800 chr2D 84.783 414 20 12 534 930 114647480 114647093 5.960000e-100 375.0
8 TraesCS2A01G163800 chr2D 72.749 844 171 46 3929 4731 591030058 591030883 4.910000e-56 230.0
9 TraesCS2A01G163800 chr2D 91.406 128 11 0 999 1126 591027329 591027456 6.480000e-40 176.0
10 TraesCS2A01G163800 chr2D 97.619 42 1 0 5640 5681 114550191 114550150 8.750000e-09 73.1
11 TraesCS2A01G163800 chr2B 91.859 2690 169 26 2882 5540 165118035 165115365 0.000000e+00 3709.0
12 TraesCS2A01G163800 chr2B 87.249 1592 106 45 467 2031 165120304 165118783 0.000000e+00 1725.0
13 TraesCS2A01G163800 chr2B 91.754 570 39 7 2032 2597 165118686 165118121 0.000000e+00 785.0
14 TraesCS2A01G163800 chr6A 99.344 610 4 0 5685 6294 575250983 575250374 0.000000e+00 1105.0
15 TraesCS2A01G163800 chr6B 99.180 610 5 0 5685 6294 89045667 89045058 0.000000e+00 1099.0
16 TraesCS2A01G163800 chr6B 92.430 502 36 2 5685 6185 173813471 173812971 0.000000e+00 715.0
17 TraesCS2A01G163800 chr1B 98.555 623 7 2 5672 6294 92533204 92533824 0.000000e+00 1099.0
18 TraesCS2A01G163800 chr3B 98.226 620 11 0 5675 6294 172658465 172657846 0.000000e+00 1085.0
19 TraesCS2A01G163800 chr7A 98.525 610 9 0 5685 6294 158292577 158293186 0.000000e+00 1077.0
20 TraesCS2A01G163800 chr7D 92.549 510 36 2 5678 6185 445144759 445145268 0.000000e+00 730.0
21 TraesCS2A01G163800 chr5A 91.363 521 41 4 5667 6185 685761223 685761741 0.000000e+00 710.0
22 TraesCS2A01G163800 chr5A 97.959 98 2 0 6197 6294 205130833 205130930 3.020000e-38 171.0
23 TraesCS2A01G163800 chr5D 98.947 95 1 0 6200 6294 23232338 23232244 3.020000e-38 171.0
24 TraesCS2A01G163800 chr4A 98.947 95 1 0 6200 6294 23605219 23605125 3.020000e-38 171.0
25 TraesCS2A01G163800 chr3D 97.959 98 2 0 6197 6294 11013493 11013590 3.020000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G163800 chr2A 116013431 116019724 6293 True 5571.0 6346 100.000000 1 6294 2 chr2A.!!$R1 6293
1 TraesCS2A01G163800 chr2A 726030005 726033797 3792 False 251.0 337 81.585500 1001 5294 2 chr2A.!!$F1 4293
2 TraesCS2A01G163800 chr2D 114550150 114555502 5352 True 2527.7 4486 95.219667 326 5681 3 chr2D.!!$R3 5355
3 TraesCS2A01G163800 chr2D 48329352 48329853 501 True 732.0 732 93.028000 5686 6185 1 chr2D.!!$R1 499
4 TraesCS2A01G163800 chr2D 591027329 591030883 3554 False 203.0 230 82.077500 999 4731 2 chr2D.!!$F1 3732
5 TraesCS2A01G163800 chr2B 165115365 165120304 4939 True 2073.0 3709 90.287333 467 5540 3 chr2B.!!$R1 5073
6 TraesCS2A01G163800 chr6A 575250374 575250983 609 True 1105.0 1105 99.344000 5685 6294 1 chr6A.!!$R1 609
7 TraesCS2A01G163800 chr6B 89045058 89045667 609 True 1099.0 1099 99.180000 5685 6294 1 chr6B.!!$R1 609
8 TraesCS2A01G163800 chr6B 173812971 173813471 500 True 715.0 715 92.430000 5685 6185 1 chr6B.!!$R2 500
9 TraesCS2A01G163800 chr1B 92533204 92533824 620 False 1099.0 1099 98.555000 5672 6294 1 chr1B.!!$F1 622
10 TraesCS2A01G163800 chr3B 172657846 172658465 619 True 1085.0 1085 98.226000 5675 6294 1 chr3B.!!$R1 619
11 TraesCS2A01G163800 chr7A 158292577 158293186 609 False 1077.0 1077 98.525000 5685 6294 1 chr7A.!!$F1 609
12 TraesCS2A01G163800 chr7D 445144759 445145268 509 False 730.0 730 92.549000 5678 6185 1 chr7D.!!$F1 507
13 TraesCS2A01G163800 chr5A 685761223 685761741 518 False 710.0 710 91.363000 5667 6185 1 chr5A.!!$F2 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.036164 TTCACCAGTGCCGCTATGTT 59.964 50.000 0.00 0.00 0.00 2.71 F
315 316 0.301687 CACATGATACAACTCCGCGC 59.698 55.000 0.00 0.00 0.00 6.86 F
541 547 0.659427 CTACTACCGATCCGCACGAA 59.341 55.000 0.00 0.00 0.00 3.85 F
788 804 0.689412 CTCCCTCCCTCACCTTCCTC 60.689 65.000 0.00 0.00 0.00 3.71 F
1274 1310 0.739813 AACGGCTGATTCGGTGCTAC 60.740 55.000 0.00 0.00 0.00 3.58 F
2118 3312 0.985416 GTTCACGTTTCGCTGTTCGC 60.985 55.000 0.00 0.00 38.27 4.70 F
3399 4912 2.774799 GCTTAGGGGCCGCAATGTG 61.775 63.158 23.39 8.12 0.00 3.21 F
4649 6271 1.968493 GTCTGGTCCTGTGGAGTAACA 59.032 52.381 0.00 0.00 29.39 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1294 0.101759 TACGTAGCACCGAATCAGCC 59.898 55.000 1.84 0.00 0.00 4.85 R
1279 1315 1.228124 CCGGAACCACTCAAGCCAA 60.228 57.895 0.00 0.00 0.00 4.52 R
1588 1632 1.600957 CTGTGAATAGATGCTTGCCCG 59.399 52.381 0.00 0.00 0.00 6.13 R
1741 2786 2.102925 CACCTTGAACAAGCCAACCATT 59.897 45.455 8.81 0.00 37.11 3.16 R
3067 4579 1.604604 ACCACTGTGCGCATAAAGTT 58.395 45.000 15.91 1.21 0.00 2.66 R
3411 4924 2.691526 ACGGTCGCTTCCAATAGTCATA 59.308 45.455 0.00 0.00 0.00 2.15 R
4855 6483 1.392589 TCCGGACGTAATCAGGTACC 58.607 55.000 2.73 2.73 42.90 3.34 R
5582 7221 0.481567 CCTACTCCCTCCGACCCATA 59.518 60.000 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.088532 TGAAATGGATTCAAACTCGGGG 58.911 45.455 0.00 0.00 44.94 5.73
23 24 1.474330 AATGGATTCAAACTCGGGGC 58.526 50.000 0.00 0.00 0.00 5.80
24 25 0.748005 ATGGATTCAAACTCGGGGCG 60.748 55.000 0.00 0.00 0.00 6.13
25 26 2.761195 GGATTCAAACTCGGGGCGC 61.761 63.158 0.00 0.00 0.00 6.53
26 27 1.745489 GATTCAAACTCGGGGCGCT 60.745 57.895 7.64 0.00 0.00 5.92
27 28 1.303317 ATTCAAACTCGGGGCGCTT 60.303 52.632 7.64 0.00 0.00 4.68
28 29 1.586154 ATTCAAACTCGGGGCGCTTG 61.586 55.000 7.64 1.57 0.00 4.01
29 30 2.668185 TTCAAACTCGGGGCGCTTGA 62.668 55.000 7.64 4.42 0.00 3.02
30 31 2.358737 AAACTCGGGGCGCTTGAG 60.359 61.111 18.09 18.09 35.85 3.02
36 37 3.130160 GGGGCGCTTGAGCAAGAG 61.130 66.667 14.04 11.53 40.79 2.85
37 38 2.046892 GGGCGCTTGAGCAAGAGA 60.047 61.111 16.42 0.00 40.05 3.10
38 39 1.672356 GGGCGCTTGAGCAAGAGAA 60.672 57.895 16.42 0.00 40.05 2.87
39 40 1.237285 GGGCGCTTGAGCAAGAGAAA 61.237 55.000 16.42 0.00 40.05 2.52
40 41 0.167689 GGCGCTTGAGCAAGAGAAAG 59.832 55.000 16.42 2.98 40.05 2.62
41 42 0.871057 GCGCTTGAGCAAGAGAAAGT 59.129 50.000 16.42 0.00 40.05 2.66
42 43 1.265365 GCGCTTGAGCAAGAGAAAGTT 59.735 47.619 16.42 0.00 40.05 2.66
43 44 2.913613 CGCTTGAGCAAGAGAAAGTTG 58.086 47.619 14.04 0.00 40.05 3.16
48 49 2.331265 GCAAGAGAAAGTTGCGGGT 58.669 52.632 0.00 0.00 40.87 5.28
49 50 0.668535 GCAAGAGAAAGTTGCGGGTT 59.331 50.000 0.00 0.00 40.87 4.11
50 51 1.600413 GCAAGAGAAAGTTGCGGGTTG 60.600 52.381 0.00 0.00 40.87 3.77
51 52 1.946768 CAAGAGAAAGTTGCGGGTTGA 59.053 47.619 0.00 0.00 0.00 3.18
52 53 1.594331 AGAGAAAGTTGCGGGTTGAC 58.406 50.000 0.00 0.00 0.00 3.18
53 54 1.134220 AGAGAAAGTTGCGGGTTGACA 60.134 47.619 0.00 0.00 0.00 3.58
54 55 1.264288 GAGAAAGTTGCGGGTTGACAG 59.736 52.381 0.00 0.00 0.00 3.51
55 56 0.317854 GAAAGTTGCGGGTTGACAGC 60.318 55.000 0.00 0.00 0.00 4.40
56 57 1.734388 AAAGTTGCGGGTTGACAGCC 61.734 55.000 0.00 0.00 37.19 4.85
57 58 2.902423 AAGTTGCGGGTTGACAGCCA 62.902 55.000 10.79 0.00 41.12 4.75
58 59 2.904866 TTGCGGGTTGACAGCCAC 60.905 61.111 10.79 2.30 41.12 5.01
59 60 3.414136 TTGCGGGTTGACAGCCACT 62.414 57.895 10.79 0.00 41.12 4.00
60 61 2.046009 TTGCGGGTTGACAGCCACTA 62.046 55.000 10.79 0.00 41.12 2.74
61 62 2.033194 GCGGGTTGACAGCCACTAC 61.033 63.158 10.79 0.00 41.12 2.73
62 63 1.736645 CGGGTTGACAGCCACTACG 60.737 63.158 10.79 0.60 41.12 3.51
63 64 1.375523 GGGTTGACAGCCACTACGG 60.376 63.158 10.79 0.00 40.71 4.02
64 65 1.370064 GGTTGACAGCCACTACGGT 59.630 57.895 3.02 0.00 36.97 4.83
65 66 0.604578 GGTTGACAGCCACTACGGTA 59.395 55.000 3.02 0.00 36.97 4.02
66 67 1.403780 GGTTGACAGCCACTACGGTAG 60.404 57.143 13.49 13.49 36.97 3.18
67 68 1.542915 GTTGACAGCCACTACGGTAGA 59.457 52.381 21.39 0.00 36.97 2.59
68 69 1.460504 TGACAGCCACTACGGTAGAG 58.539 55.000 21.39 13.36 36.97 2.43
69 70 0.100861 GACAGCCACTACGGTAGAGC 59.899 60.000 21.39 20.55 36.97 4.09
70 71 0.611062 ACAGCCACTACGGTAGAGCA 60.611 55.000 25.41 0.00 36.97 4.26
71 72 0.530744 CAGCCACTACGGTAGAGCAA 59.469 55.000 25.41 0.00 36.97 3.91
72 73 0.531200 AGCCACTACGGTAGAGCAAC 59.469 55.000 25.41 11.56 36.97 4.17
73 74 0.531200 GCCACTACGGTAGAGCAACT 59.469 55.000 21.39 0.00 36.97 3.16
74 75 1.067071 GCCACTACGGTAGAGCAACTT 60.067 52.381 21.39 0.00 36.97 2.66
75 76 2.612221 GCCACTACGGTAGAGCAACTTT 60.612 50.000 21.39 0.00 36.97 2.66
76 77 3.367703 GCCACTACGGTAGAGCAACTTTA 60.368 47.826 21.39 0.00 36.97 1.85
77 78 4.171754 CCACTACGGTAGAGCAACTTTAC 58.828 47.826 21.39 0.00 0.00 2.01
78 79 4.082354 CCACTACGGTAGAGCAACTTTACT 60.082 45.833 21.39 0.00 0.00 2.24
79 80 5.467705 CACTACGGTAGAGCAACTTTACTT 58.532 41.667 21.39 0.00 0.00 2.24
80 81 5.924825 CACTACGGTAGAGCAACTTTACTTT 59.075 40.000 21.39 0.00 0.00 2.66
81 82 6.423001 CACTACGGTAGAGCAACTTTACTTTT 59.577 38.462 21.39 0.00 0.00 2.27
82 83 5.668558 ACGGTAGAGCAACTTTACTTTTG 57.331 39.130 0.00 0.00 0.00 2.44
83 84 5.121105 ACGGTAGAGCAACTTTACTTTTGT 58.879 37.500 0.00 0.00 0.00 2.83
84 85 5.587443 ACGGTAGAGCAACTTTACTTTTGTT 59.413 36.000 0.00 0.00 0.00 2.83
85 86 6.094464 ACGGTAGAGCAACTTTACTTTTGTTT 59.906 34.615 0.00 0.00 0.00 2.83
86 87 6.413818 CGGTAGAGCAACTTTACTTTTGTTTG 59.586 38.462 0.00 0.00 0.00 2.93
87 88 6.695713 GGTAGAGCAACTTTACTTTTGTTTGG 59.304 38.462 0.00 0.00 0.00 3.28
88 89 6.280855 AGAGCAACTTTACTTTTGTTTGGT 57.719 33.333 0.00 0.00 32.12 3.67
89 90 6.697395 AGAGCAACTTTACTTTTGTTTGGTT 58.303 32.000 0.00 0.00 30.36 3.67
90 91 6.589907 AGAGCAACTTTACTTTTGTTTGGTTG 59.410 34.615 0.00 0.00 37.08 3.77
91 92 6.459923 AGCAACTTTACTTTTGTTTGGTTGA 58.540 32.000 0.00 0.00 36.64 3.18
92 93 6.367695 AGCAACTTTACTTTTGTTTGGTTGAC 59.632 34.615 0.00 0.00 36.64 3.18
93 94 6.367695 GCAACTTTACTTTTGTTTGGTTGACT 59.632 34.615 0.00 0.00 36.64 3.41
94 95 7.542824 GCAACTTTACTTTTGTTTGGTTGACTA 59.457 33.333 0.00 0.00 36.64 2.59
95 96 9.072294 CAACTTTACTTTTGTTTGGTTGACTAG 57.928 33.333 0.00 0.00 36.64 2.57
96 97 8.344446 ACTTTACTTTTGTTTGGTTGACTAGT 57.656 30.769 0.00 0.00 0.00 2.57
97 98 8.799367 ACTTTACTTTTGTTTGGTTGACTAGTT 58.201 29.630 0.00 0.00 0.00 2.24
98 99 9.634163 CTTTACTTTTGTTTGGTTGACTAGTTT 57.366 29.630 0.00 0.00 0.00 2.66
99 100 8.973835 TTACTTTTGTTTGGTTGACTAGTTTG 57.026 30.769 0.00 0.00 0.00 2.93
100 101 6.988522 ACTTTTGTTTGGTTGACTAGTTTGT 58.011 32.000 0.00 0.00 0.00 2.83
101 102 8.113173 ACTTTTGTTTGGTTGACTAGTTTGTA 57.887 30.769 0.00 0.00 0.00 2.41
102 103 8.578151 ACTTTTGTTTGGTTGACTAGTTTGTAA 58.422 29.630 0.00 0.00 0.00 2.41
103 104 9.581099 CTTTTGTTTGGTTGACTAGTTTGTAAT 57.419 29.630 0.00 0.00 0.00 1.89
104 105 9.930693 TTTTGTTTGGTTGACTAGTTTGTAATT 57.069 25.926 0.00 0.00 0.00 1.40
107 108 8.347035 TGTTTGGTTGACTAGTTTGTAATTAGC 58.653 33.333 0.00 0.00 0.00 3.09
108 109 8.565416 GTTTGGTTGACTAGTTTGTAATTAGCT 58.435 33.333 0.00 0.00 0.00 3.32
109 110 8.685838 TTGGTTGACTAGTTTGTAATTAGCTT 57.314 30.769 0.00 0.00 0.00 3.74
110 111 8.094798 TGGTTGACTAGTTTGTAATTAGCTTG 57.905 34.615 0.00 0.00 0.00 4.01
111 112 7.717875 TGGTTGACTAGTTTGTAATTAGCTTGT 59.282 33.333 0.00 0.00 0.00 3.16
112 113 8.565416 GGTTGACTAGTTTGTAATTAGCTTGTT 58.435 33.333 0.00 0.00 0.00 2.83
113 114 9.946165 GTTGACTAGTTTGTAATTAGCTTGTTT 57.054 29.630 0.00 0.00 0.00 2.83
120 121 9.244799 AGTTTGTAATTAGCTTGTTTTTAGTGC 57.755 29.630 0.00 0.00 0.00 4.40
121 122 9.244799 GTTTGTAATTAGCTTGTTTTTAGTGCT 57.755 29.630 0.00 0.00 37.72 4.40
122 123 9.458374 TTTGTAATTAGCTTGTTTTTAGTGCTC 57.542 29.630 0.00 0.00 35.47 4.26
123 124 8.160521 TGTAATTAGCTTGTTTTTAGTGCTCA 57.839 30.769 0.00 0.00 35.47 4.26
124 125 8.625651 TGTAATTAGCTTGTTTTTAGTGCTCAA 58.374 29.630 0.00 0.00 35.47 3.02
125 126 7.930513 AATTAGCTTGTTTTTAGTGCTCAAC 57.069 32.000 0.00 0.00 35.47 3.18
126 127 6.693315 TTAGCTTGTTTTTAGTGCTCAACT 57.307 33.333 0.00 0.00 43.40 3.16
127 128 7.795482 TTAGCTTGTTTTTAGTGCTCAACTA 57.205 32.000 0.00 0.00 40.56 2.24
128 129 6.305693 AGCTTGTTTTTAGTGCTCAACTAG 57.694 37.500 0.00 0.00 42.38 2.57
129 130 5.239525 AGCTTGTTTTTAGTGCTCAACTAGG 59.760 40.000 0.00 0.00 42.38 3.02
130 131 5.008712 GCTTGTTTTTAGTGCTCAACTAGGT 59.991 40.000 0.00 0.00 42.38 3.08
131 132 6.371809 TTGTTTTTAGTGCTCAACTAGGTG 57.628 37.500 0.00 0.00 42.38 4.00
132 133 5.433526 TGTTTTTAGTGCTCAACTAGGTGT 58.566 37.500 7.85 0.00 42.38 4.16
133 134 5.883673 TGTTTTTAGTGCTCAACTAGGTGTT 59.116 36.000 7.85 0.00 42.38 3.32
146 147 6.811253 AACTAGGTGTTGCGATATTTTTCA 57.189 33.333 0.00 0.00 37.52 2.69
147 148 6.811253 ACTAGGTGTTGCGATATTTTTCAA 57.189 33.333 0.00 0.00 0.00 2.69
148 149 6.608610 ACTAGGTGTTGCGATATTTTTCAAC 58.391 36.000 0.00 0.00 39.23 3.18
149 150 4.472286 AGGTGTTGCGATATTTTTCAACG 58.528 39.130 0.00 0.00 41.03 4.10
150 151 3.606346 GGTGTTGCGATATTTTTCAACGG 59.394 43.478 0.00 0.00 41.03 4.44
151 152 4.223659 GTGTTGCGATATTTTTCAACGGT 58.776 39.130 0.00 0.00 41.03 4.83
152 153 4.677832 GTGTTGCGATATTTTTCAACGGTT 59.322 37.500 0.00 0.00 41.03 4.44
153 154 5.174216 GTGTTGCGATATTTTTCAACGGTTT 59.826 36.000 0.00 0.00 41.03 3.27
154 155 6.360148 GTGTTGCGATATTTTTCAACGGTTTA 59.640 34.615 0.00 0.00 41.03 2.01
155 156 7.061326 GTGTTGCGATATTTTTCAACGGTTTAT 59.939 33.333 0.00 0.00 41.03 1.40
156 157 8.235226 TGTTGCGATATTTTTCAACGGTTTATA 58.765 29.630 0.00 0.00 41.03 0.98
157 158 9.228636 GTTGCGATATTTTTCAACGGTTTATAT 57.771 29.630 0.00 0.00 31.07 0.86
165 166 7.867305 TTTTCAACGGTTTATATATGGCAGA 57.133 32.000 0.00 0.00 0.00 4.26
166 167 7.867305 TTTCAACGGTTTATATATGGCAGAA 57.133 32.000 0.00 0.00 0.00 3.02
167 168 8.458573 TTTCAACGGTTTATATATGGCAGAAT 57.541 30.769 0.00 0.00 0.00 2.40
168 169 9.562408 TTTCAACGGTTTATATATGGCAGAATA 57.438 29.630 0.00 0.00 0.00 1.75
169 170 9.733556 TTCAACGGTTTATATATGGCAGAATAT 57.266 29.630 9.35 9.35 0.00 1.28
170 171 9.378551 TCAACGGTTTATATATGGCAGAATATC 57.621 33.333 8.05 0.00 0.00 1.63
171 172 8.612619 CAACGGTTTATATATGGCAGAATATCC 58.387 37.037 8.05 4.46 0.00 2.59
172 173 8.090788 ACGGTTTATATATGGCAGAATATCCT 57.909 34.615 8.05 0.00 0.00 3.24
173 174 9.209048 ACGGTTTATATATGGCAGAATATCCTA 57.791 33.333 8.05 0.00 0.00 2.94
236 237 3.869481 CCAAGGTTGGGGGTTGTG 58.131 61.111 0.27 0.00 44.70 3.33
237 238 1.836604 CCAAGGTTGGGGGTTGTGG 60.837 63.158 0.27 0.00 44.70 4.17
238 239 1.075600 CAAGGTTGGGGGTTGTGGT 60.076 57.895 0.00 0.00 0.00 4.16
239 240 1.112916 CAAGGTTGGGGGTTGTGGTC 61.113 60.000 0.00 0.00 0.00 4.02
240 241 1.293683 AAGGTTGGGGGTTGTGGTCT 61.294 55.000 0.00 0.00 0.00 3.85
241 242 1.228459 GGTTGGGGGTTGTGGTCTC 60.228 63.158 0.00 0.00 0.00 3.36
242 243 1.716028 GGTTGGGGGTTGTGGTCTCT 61.716 60.000 0.00 0.00 0.00 3.10
243 244 0.537371 GTTGGGGGTTGTGGTCTCTG 60.537 60.000 0.00 0.00 0.00 3.35
244 245 2.034221 GGGGGTTGTGGTCTCTGC 59.966 66.667 0.00 0.00 0.00 4.26
245 246 2.829384 GGGGGTTGTGGTCTCTGCA 61.829 63.158 0.00 0.00 0.00 4.41
246 247 1.302832 GGGGTTGTGGTCTCTGCAG 60.303 63.158 7.63 7.63 0.00 4.41
247 248 1.968540 GGGTTGTGGTCTCTGCAGC 60.969 63.158 9.47 0.00 0.00 5.25
248 249 1.968540 GGTTGTGGTCTCTGCAGCC 60.969 63.158 9.47 5.26 0.00 4.85
249 250 1.072159 GTTGTGGTCTCTGCAGCCT 59.928 57.895 9.47 0.00 0.00 4.58
250 251 0.536006 GTTGTGGTCTCTGCAGCCTT 60.536 55.000 9.47 0.00 0.00 4.35
251 252 0.535780 TTGTGGTCTCTGCAGCCTTG 60.536 55.000 9.47 0.00 0.00 3.61
263 264 1.456296 CAGCCTTGCACATAGCTTCA 58.544 50.000 0.00 0.00 45.94 3.02
264 265 1.131883 CAGCCTTGCACATAGCTTCAC 59.868 52.381 0.00 0.00 45.94 3.18
265 266 0.453390 GCCTTGCACATAGCTTCACC 59.547 55.000 0.00 0.00 45.94 4.02
266 267 1.825090 CCTTGCACATAGCTTCACCA 58.175 50.000 0.00 0.00 45.94 4.17
267 268 1.741706 CCTTGCACATAGCTTCACCAG 59.258 52.381 0.00 0.00 45.94 4.00
268 269 2.430465 CTTGCACATAGCTTCACCAGT 58.570 47.619 0.00 0.00 45.94 4.00
269 270 1.812235 TGCACATAGCTTCACCAGTG 58.188 50.000 0.00 0.00 45.94 3.66
270 271 0.449388 GCACATAGCTTCACCAGTGC 59.551 55.000 0.00 0.00 44.31 4.40
271 272 1.089920 CACATAGCTTCACCAGTGCC 58.910 55.000 0.00 0.00 0.00 5.01
272 273 0.391661 ACATAGCTTCACCAGTGCCG 60.392 55.000 0.00 0.00 0.00 5.69
273 274 1.450312 ATAGCTTCACCAGTGCCGC 60.450 57.895 0.00 0.00 0.00 6.53
274 275 1.903877 ATAGCTTCACCAGTGCCGCT 61.904 55.000 14.85 14.85 38.59 5.52
275 276 1.254975 TAGCTTCACCAGTGCCGCTA 61.255 55.000 13.36 13.36 37.18 4.26
276 277 1.450312 GCTTCACCAGTGCCGCTAT 60.450 57.895 0.00 0.00 0.00 2.97
277 278 1.709147 GCTTCACCAGTGCCGCTATG 61.709 60.000 0.00 0.00 0.00 2.23
278 279 0.391661 CTTCACCAGTGCCGCTATGT 60.392 55.000 0.00 0.00 0.00 2.29
279 280 0.036164 TTCACCAGTGCCGCTATGTT 59.964 50.000 0.00 0.00 0.00 2.71
280 281 0.036164 TCACCAGTGCCGCTATGTTT 59.964 50.000 0.00 0.00 0.00 2.83
281 282 0.881118 CACCAGTGCCGCTATGTTTT 59.119 50.000 0.00 0.00 0.00 2.43
282 283 1.269448 CACCAGTGCCGCTATGTTTTT 59.731 47.619 0.00 0.00 0.00 1.94
306 307 7.835634 TTTAATCGCTTACACACATGATACA 57.164 32.000 0.00 0.00 0.00 2.29
307 308 7.835634 TTAATCGCTTACACACATGATACAA 57.164 32.000 0.00 0.00 0.00 2.41
308 309 5.718649 ATCGCTTACACACATGATACAAC 57.281 39.130 0.00 0.00 0.00 3.32
309 310 4.816392 TCGCTTACACACATGATACAACT 58.184 39.130 0.00 0.00 0.00 3.16
310 311 4.862574 TCGCTTACACACATGATACAACTC 59.137 41.667 0.00 0.00 0.00 3.01
311 312 4.032900 CGCTTACACACATGATACAACTCC 59.967 45.833 0.00 0.00 0.00 3.85
312 313 4.032900 GCTTACACACATGATACAACTCCG 59.967 45.833 0.00 0.00 0.00 4.63
313 314 2.346803 ACACACATGATACAACTCCGC 58.653 47.619 0.00 0.00 0.00 5.54
314 315 1.324435 CACACATGATACAACTCCGCG 59.676 52.381 0.00 0.00 0.00 6.46
315 316 0.301687 CACATGATACAACTCCGCGC 59.698 55.000 0.00 0.00 0.00 6.86
316 317 1.145759 ACATGATACAACTCCGCGCG 61.146 55.000 25.67 25.67 0.00 6.86
317 318 1.591594 ATGATACAACTCCGCGCGG 60.592 57.895 42.13 42.13 0.00 6.46
318 319 2.960129 GATACAACTCCGCGCGGG 60.960 66.667 44.95 35.79 35.59 6.13
319 320 3.711541 GATACAACTCCGCGCGGGT 62.712 63.158 44.95 36.44 37.00 5.28
320 321 3.305177 ATACAACTCCGCGCGGGTT 62.305 57.895 44.95 39.08 37.00 4.11
330 331 1.752501 CGCGCGGGTTGAGATACAAG 61.753 60.000 24.84 0.00 39.30 3.16
337 338 4.513442 CGGGTTGAGATACAAGAAATCCA 58.487 43.478 0.00 0.00 39.30 3.41
340 341 5.946377 GGGTTGAGATACAAGAAATCCAAGT 59.054 40.000 0.00 0.00 39.30 3.16
348 349 2.678336 CAAGAAATCCAAGTAGGTCGCC 59.322 50.000 0.00 0.00 39.02 5.54
358 359 2.577700 AGTAGGTCGCCTCACATAGAG 58.422 52.381 1.46 0.00 44.31 2.43
377 378 9.226606 ACATAGAGAACATGTTTAAATTCCGAA 57.773 29.630 13.36 0.00 32.72 4.30
421 422 9.413734 ACTAATCCATCTTTCCAAATTTCCTAG 57.586 33.333 0.00 0.00 0.00 3.02
426 427 8.556589 TCCATCTTTCCAAATTTCCTAGTATGA 58.443 33.333 0.00 0.00 0.00 2.15
450 451 9.607333 TGAGATATTGAAATGTATCCTAGACCT 57.393 33.333 0.00 0.00 0.00 3.85
458 459 9.256228 TGAAATGTATCCTAGACCTACCATATC 57.744 37.037 0.00 0.00 0.00 1.63
459 460 9.256228 GAAATGTATCCTAGACCTACCATATCA 57.744 37.037 0.00 0.00 0.00 2.15
521 527 1.000274 ACCGGCAGTGAAAGAAAATGC 60.000 47.619 0.00 0.00 36.16 3.56
526 532 4.773323 GCAGTGAAAGAAAATGCCTACT 57.227 40.909 0.00 0.00 0.00 2.57
527 533 5.880054 GCAGTGAAAGAAAATGCCTACTA 57.120 39.130 0.00 0.00 0.00 1.82
528 534 5.631992 GCAGTGAAAGAAAATGCCTACTAC 58.368 41.667 0.00 0.00 0.00 2.73
529 535 5.392057 GCAGTGAAAGAAAATGCCTACTACC 60.392 44.000 0.00 0.00 0.00 3.18
530 536 4.935808 AGTGAAAGAAAATGCCTACTACCG 59.064 41.667 0.00 0.00 0.00 4.02
531 537 4.933400 GTGAAAGAAAATGCCTACTACCGA 59.067 41.667 0.00 0.00 0.00 4.69
532 538 5.585047 GTGAAAGAAAATGCCTACTACCGAT 59.415 40.000 0.00 0.00 0.00 4.18
541 547 0.659427 CTACTACCGATCCGCACGAA 59.341 55.000 0.00 0.00 0.00 3.85
545 551 4.789075 CCGATCCGCACGAACCGT 62.789 66.667 0.00 0.00 42.36 4.83
551 557 0.881159 TCCGCACGAACCGTTGAAAT 60.881 50.000 0.00 0.00 38.32 2.17
559 565 4.073549 ACGAACCGTTGAAATGGGAAATA 58.926 39.130 6.27 0.00 36.35 1.40
585 591 3.131396 GAGAAGTTTTCCGAACTCTGCA 58.869 45.455 0.00 0.00 0.00 4.41
605 612 4.157472 TGCAAAATTAATCACCATCGAGCA 59.843 37.500 0.00 0.00 0.00 4.26
744 760 2.923910 AAAAGGAGCCCCAGCCCTC 61.924 63.158 0.00 0.00 38.34 4.30
774 790 4.423209 GCACTCCCCTCCCTCCCT 62.423 72.222 0.00 0.00 0.00 4.20
775 791 2.041405 CACTCCCCTCCCTCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
788 804 0.689412 CTCCCTCCCTCACCTTCCTC 60.689 65.000 0.00 0.00 0.00 3.71
789 805 1.156322 TCCCTCCCTCACCTTCCTCT 61.156 60.000 0.00 0.00 0.00 3.69
842 876 3.412408 GGGTGCTTCCTCCCTCCC 61.412 72.222 0.00 0.00 40.82 4.30
878 912 2.738521 CACTGGCTCCGTTCGGTG 60.739 66.667 11.04 9.77 34.49 4.94
954 988 1.739562 CTTCTCGCTCCAGTGGTGC 60.740 63.158 23.50 23.50 38.64 5.01
1062 1096 3.657350 GGGGTGGCCAAGCTGGTA 61.657 66.667 7.24 0.00 40.46 3.25
1126 1160 3.971702 GGGGGCACAAGGTGAGCT 61.972 66.667 0.00 0.00 35.23 4.09
1244 1280 3.512724 TGGTGTTTAGCTGGGAGTAGTAC 59.487 47.826 0.00 0.00 0.00 2.73
1245 1281 3.768215 GGTGTTTAGCTGGGAGTAGTACT 59.232 47.826 1.37 1.37 0.00 2.73
1246 1282 4.952335 GGTGTTTAGCTGGGAGTAGTACTA 59.048 45.833 1.88 0.00 0.00 1.82
1247 1283 5.067544 GGTGTTTAGCTGGGAGTAGTACTAG 59.932 48.000 1.87 0.00 0.00 2.57
1248 1284 5.651576 GTGTTTAGCTGGGAGTAGTACTAGT 59.348 44.000 10.09 10.09 0.00 2.57
1251 1287 6.770746 TTAGCTGGGAGTAGTACTAGTTTG 57.229 41.667 11.56 4.35 0.00 2.93
1253 1289 3.447944 GCTGGGAGTAGTACTAGTTTGCT 59.552 47.826 11.56 0.80 0.00 3.91
1254 1290 4.440387 GCTGGGAGTAGTACTAGTTTGCTC 60.440 50.000 11.56 9.73 0.00 4.26
1256 1292 5.081728 TGGGAGTAGTACTAGTTTGCTCAA 58.918 41.667 19.40 9.72 0.00 3.02
1257 1293 5.047519 TGGGAGTAGTACTAGTTTGCTCAAC 60.048 44.000 19.40 14.32 35.32 3.18
1258 1294 5.094134 GGAGTAGTACTAGTTTGCTCAACG 58.906 45.833 19.40 0.00 40.75 4.10
1274 1310 0.739813 AACGGCTGATTCGGTGCTAC 60.740 55.000 0.00 0.00 0.00 3.58
1275 1311 2.230940 CGGCTGATTCGGTGCTACG 61.231 63.158 0.00 0.00 0.00 3.51
1279 1315 2.470821 GCTGATTCGGTGCTACGTATT 58.529 47.619 0.00 0.00 34.94 1.89
1320 1356 4.461781 GGTGTACTAGTTTGCTCAGGAGTA 59.538 45.833 0.00 0.00 0.00 2.59
1386 1425 3.813166 TCTGTTTCGGTGTCTGAAATTCC 59.187 43.478 6.96 0.00 37.62 3.01
1389 1428 2.472695 TCGGTGTCTGAAATTCCCAG 57.527 50.000 0.00 2.37 0.00 4.45
1432 1472 4.424061 TCATGGTCTTGAATTTTGAGCG 57.576 40.909 0.00 0.00 0.00 5.03
1469 1513 1.671328 GCTATTCGGTTTCTTGGCCTC 59.329 52.381 3.32 0.00 0.00 4.70
1475 1519 1.885887 CGGTTTCTTGGCCTCAAATCA 59.114 47.619 3.32 0.00 31.77 2.57
1580 1624 1.339151 CCAAGTCCTGTCCACCTTAGC 60.339 57.143 0.00 0.00 0.00 3.09
1588 1632 4.081087 TCCTGTCCACCTTAGCTGTAAATC 60.081 45.833 0.00 0.00 0.00 2.17
1741 2786 7.600960 TGCATTTTGTTAGATTATGCAGAACA 58.399 30.769 0.00 0.00 44.59 3.18
1815 2860 2.406401 CTGGTAGACGCCCGTACG 59.594 66.667 8.69 8.69 39.50 3.67
1950 3004 3.838244 ACTTGTAGTTCACTTCAGCCA 57.162 42.857 0.00 0.00 0.00 4.75
2118 3312 0.985416 GTTCACGTTTCGCTGTTCGC 60.985 55.000 0.00 0.00 38.27 4.70
2972 4483 6.599638 GCCTATCTGTTATCCATCCATTAACC 59.400 42.308 0.00 0.00 0.00 2.85
3067 4579 7.981225 GGTAGTGACGGATACCTTTATTGTTAA 59.019 37.037 0.00 0.00 38.74 2.01
3083 4595 4.822036 TGTTAAACTTTATGCGCACAGT 57.178 36.364 14.90 12.99 0.00 3.55
3099 4611 4.499019 CGCACAGTGGTTTTCCTATTTTGT 60.499 41.667 1.84 0.00 41.38 2.83
3157 4669 5.646577 ATTCCGATAGACCCTTATTCTCG 57.353 43.478 0.00 0.00 39.76 4.04
3399 4912 2.774799 GCTTAGGGGCCGCAATGTG 61.775 63.158 23.39 8.12 0.00 3.21
3411 4924 4.423732 GCCGCAATGTGAACTTTCATTAT 58.576 39.130 0.00 0.00 39.73 1.28
4050 5635 6.613233 AGATTTAGCGAGAATGAGGTATACG 58.387 40.000 0.00 0.00 0.00 3.06
4373 5969 4.035112 TCGGTTACTCCAAGGTAATCCAT 58.965 43.478 0.00 0.00 34.73 3.41
4506 6109 3.164269 CCTGCCTACATCGCCCCT 61.164 66.667 0.00 0.00 0.00 4.79
4609 6217 4.339247 ACCTGAAACCTTCAAACATCACTG 59.661 41.667 0.00 0.00 39.58 3.66
4649 6271 1.968493 GTCTGGTCCTGTGGAGTAACA 59.032 52.381 0.00 0.00 29.39 2.41
4745 6367 4.758674 ACTGTGAGTTCATCCAACAATCAG 59.241 41.667 0.00 0.00 37.48 2.90
4855 6483 4.465016 GGATACTCAGCGTACAATACTCG 58.535 47.826 0.00 0.00 0.00 4.18
4999 6627 1.065854 ACCTGCATTCTCACCAGCTAC 60.066 52.381 0.00 0.00 0.00 3.58
5386 7023 0.383949 TTTGTTTCAGAGGGTTGCGC 59.616 50.000 0.00 0.00 0.00 6.09
5408 7045 5.505286 GCTGTGCTGTTGTATGATTACATC 58.495 41.667 0.00 0.00 38.12 3.06
5411 7048 6.172630 TGTGCTGTTGTATGATTACATCTGT 58.827 36.000 0.00 0.00 38.12 3.41
5429 7066 5.224562 TCTGTTTTCTGTAACCGTTGTTG 57.775 39.130 0.00 0.00 35.87 3.33
5437 7074 3.456280 TGTAACCGTTGTTGGTAGTGAC 58.544 45.455 0.00 0.00 42.89 3.67
5450 7087 3.007074 TGGTAGTGACGCTGTGGATAAAA 59.993 43.478 0.00 0.00 0.00 1.52
5518 7157 3.507162 TTCCTGGTGATTTGCTTCTCA 57.493 42.857 0.00 0.00 0.00 3.27
5527 7166 4.384846 GTGATTTGCTTCTCATTGTGCTTG 59.615 41.667 0.00 0.00 0.00 4.01
5528 7167 4.278919 TGATTTGCTTCTCATTGTGCTTGA 59.721 37.500 0.00 0.00 0.00 3.02
5546 7185 6.546972 GCTTGAGCAGTTTATATTACTCCC 57.453 41.667 0.00 0.00 41.59 4.30
5548 7187 6.425417 GCTTGAGCAGTTTATATTACTCCCTC 59.575 42.308 0.00 0.00 41.59 4.30
5549 7188 6.420913 TGAGCAGTTTATATTACTCCCTCC 57.579 41.667 0.00 0.00 0.00 4.30
5550 7189 5.010719 TGAGCAGTTTATATTACTCCCTCCG 59.989 44.000 0.00 0.00 0.00 4.63
5551 7190 5.145564 AGCAGTTTATATTACTCCCTCCGA 58.854 41.667 0.00 0.00 0.00 4.55
5552 7191 5.244178 AGCAGTTTATATTACTCCCTCCGAG 59.756 44.000 0.00 0.00 44.95 4.63
5554 7193 6.239232 GCAGTTTATATTACTCCCTCCGAGAA 60.239 42.308 0.00 0.00 41.63 2.87
5555 7194 7.371936 CAGTTTATATTACTCCCTCCGAGAAG 58.628 42.308 0.00 0.00 41.63 2.85
5556 7195 7.014422 CAGTTTATATTACTCCCTCCGAGAAGT 59.986 40.741 0.00 3.06 41.63 3.01
5557 7196 7.564292 AGTTTATATTACTCCCTCCGAGAAGTT 59.436 37.037 8.24 0.00 41.63 2.66
5558 7197 5.793030 ATATTACTCCCTCCGAGAAGTTG 57.207 43.478 8.24 0.00 41.63 3.16
5559 7198 2.599408 TACTCCCTCCGAGAAGTTGT 57.401 50.000 8.24 0.00 41.63 3.32
5560 7199 2.599408 ACTCCCTCCGAGAAGTTGTA 57.401 50.000 0.00 0.00 41.63 2.41
5561 7200 2.169330 ACTCCCTCCGAGAAGTTGTAC 58.831 52.381 0.00 0.00 41.63 2.90
5563 7202 3.009916 ACTCCCTCCGAGAAGTTGTACTA 59.990 47.826 0.00 0.00 41.63 1.82
5564 7203 4.015084 CTCCCTCCGAGAAGTTGTACTAA 58.985 47.826 0.00 0.00 41.63 2.24
5566 7205 4.219288 TCCCTCCGAGAAGTTGTACTAAAC 59.781 45.833 0.00 0.00 0.00 2.01
5567 7206 4.492611 CCTCCGAGAAGTTGTACTAAACC 58.507 47.826 0.00 0.00 0.00 3.27
5568 7207 4.021719 CCTCCGAGAAGTTGTACTAAACCA 60.022 45.833 0.00 0.00 0.00 3.67
5569 7208 5.130292 TCCGAGAAGTTGTACTAAACCAG 57.870 43.478 0.00 0.00 0.00 4.00
5570 7209 3.678548 CCGAGAAGTTGTACTAAACCAGC 59.321 47.826 0.00 0.00 0.00 4.85
5571 7210 3.364023 CGAGAAGTTGTACTAAACCAGCG 59.636 47.826 0.00 0.00 0.00 5.18
5572 7211 4.553323 GAGAAGTTGTACTAAACCAGCGA 58.447 43.478 0.00 0.00 0.00 4.93
5574 7213 3.738830 AGTTGTACTAAACCAGCGACA 57.261 42.857 0.00 0.00 0.00 4.35
5575 7214 4.062677 AGTTGTACTAAACCAGCGACAA 57.937 40.909 0.00 0.00 33.29 3.18
5576 7215 4.056050 AGTTGTACTAAACCAGCGACAAG 58.944 43.478 0.00 0.00 35.28 3.16
5577 7216 3.738830 TGTACTAAACCAGCGACAAGT 57.261 42.857 0.00 0.00 0.00 3.16
5578 7217 4.852134 TGTACTAAACCAGCGACAAGTA 57.148 40.909 0.00 0.00 0.00 2.24
5579 7218 5.395682 TGTACTAAACCAGCGACAAGTAT 57.604 39.130 0.00 0.00 0.00 2.12
5580 7219 6.513806 TGTACTAAACCAGCGACAAGTATA 57.486 37.500 0.00 0.00 0.00 1.47
5581 7220 6.923012 TGTACTAAACCAGCGACAAGTATAA 58.077 36.000 0.00 0.00 0.00 0.98
5582 7221 7.549839 TGTACTAAACCAGCGACAAGTATAAT 58.450 34.615 0.00 0.00 0.00 1.28
5584 7223 9.688592 GTACTAAACCAGCGACAAGTATAATAT 57.311 33.333 0.00 0.00 0.00 1.28
5586 7225 6.861065 AAACCAGCGACAAGTATAATATGG 57.139 37.500 0.00 0.00 0.00 2.74
5587 7226 4.894784 ACCAGCGACAAGTATAATATGGG 58.105 43.478 0.00 0.00 0.00 4.00
5588 7227 4.347000 ACCAGCGACAAGTATAATATGGGT 59.653 41.667 0.00 0.00 0.00 4.51
5589 7228 4.929808 CCAGCGACAAGTATAATATGGGTC 59.070 45.833 0.00 0.00 0.00 4.46
5590 7229 4.621460 CAGCGACAAGTATAATATGGGTCG 59.379 45.833 0.00 0.00 46.55 4.79
5591 7230 3.924686 GCGACAAGTATAATATGGGTCGG 59.075 47.826 12.34 0.00 44.68 4.79
5592 7231 4.321452 GCGACAAGTATAATATGGGTCGGA 60.321 45.833 12.34 0.00 44.68 4.55
5593 7232 5.399858 CGACAAGTATAATATGGGTCGGAG 58.600 45.833 0.00 0.00 41.89 4.63
5594 7233 5.621555 CGACAAGTATAATATGGGTCGGAGG 60.622 48.000 0.00 0.00 41.89 4.30
5595 7234 4.530946 ACAAGTATAATATGGGTCGGAGGG 59.469 45.833 0.00 0.00 0.00 4.30
5596 7235 4.687262 AGTATAATATGGGTCGGAGGGA 57.313 45.455 0.00 0.00 0.00 4.20
5597 7236 4.611367 AGTATAATATGGGTCGGAGGGAG 58.389 47.826 0.00 0.00 0.00 4.30
5598 7237 3.562108 ATAATATGGGTCGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5599 7238 4.687262 ATAATATGGGTCGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5600 7239 2.606751 ATATGGGTCGGAGGGAGTAG 57.393 55.000 0.00 0.00 0.00 2.57
5601 7240 0.481567 TATGGGTCGGAGGGAGTAGG 59.518 60.000 0.00 0.00 0.00 3.18
5602 7241 1.591280 ATGGGTCGGAGGGAGTAGGT 61.591 60.000 0.00 0.00 0.00 3.08
5604 7243 0.616964 GGGTCGGAGGGAGTAGGTTT 60.617 60.000 0.00 0.00 0.00 3.27
5606 7245 1.627329 GGTCGGAGGGAGTAGGTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
5624 7263 3.813529 TTTTGTTTGTTTGTTTGCGGG 57.186 38.095 0.00 0.00 0.00 6.13
5625 7264 1.079503 TTGTTTGTTTGTTTGCGGGC 58.920 45.000 0.00 0.00 0.00 6.13
5626 7265 0.037326 TGTTTGTTTGTTTGCGGGCA 60.037 45.000 0.00 0.00 0.00 5.36
5672 7523 5.614324 TCGTCCTAATTGTTGATCCATCT 57.386 39.130 0.00 0.00 0.00 2.90
5681 7532 6.845758 ATTGTTGATCCATCTTGTGTTCAT 57.154 33.333 0.00 0.00 0.00 2.57
5682 7533 5.885230 TGTTGATCCATCTTGTGTTCATC 57.115 39.130 0.00 0.00 0.00 2.92
5729 7580 0.530431 CGCAAAGGCCAAAAGCAAGT 60.530 50.000 5.01 0.00 46.50 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.474330 GCCCCGAGTTTGAATCCATT 58.526 50.000 0.00 0.00 0.00 3.16
7 8 2.761195 GCGCCCCGAGTTTGAATCC 61.761 63.158 0.00 0.00 0.00 3.01
8 9 1.305930 AAGCGCCCCGAGTTTGAATC 61.306 55.000 2.29 0.00 0.00 2.52
10 11 2.112297 AAGCGCCCCGAGTTTGAA 59.888 55.556 2.29 0.00 0.00 2.69
12 13 2.668212 TCAAGCGCCCCGAGTTTG 60.668 61.111 2.29 0.00 0.00 2.93
19 20 3.130160 CTCTTGCTCAAGCGCCCC 61.130 66.667 2.29 0.00 45.83 5.80
20 21 1.237285 TTTCTCTTGCTCAAGCGCCC 61.237 55.000 2.29 0.00 45.83 6.13
21 22 0.167689 CTTTCTCTTGCTCAAGCGCC 59.832 55.000 2.29 0.00 45.83 6.53
22 23 0.871057 ACTTTCTCTTGCTCAAGCGC 59.129 50.000 0.00 0.00 45.83 5.92
23 24 2.913613 CAACTTTCTCTTGCTCAAGCG 58.086 47.619 4.81 0.00 45.83 4.68
24 25 2.659387 GCAACTTTCTCTTGCTCAAGC 58.341 47.619 4.81 0.00 40.79 4.01
25 26 2.350197 CCGCAACTTTCTCTTGCTCAAG 60.350 50.000 3.32 3.32 41.64 3.02
26 27 1.603802 CCGCAACTTTCTCTTGCTCAA 59.396 47.619 1.98 0.00 41.64 3.02
27 28 1.229428 CCGCAACTTTCTCTTGCTCA 58.771 50.000 1.98 0.00 41.64 4.26
28 29 0.519077 CCCGCAACTTTCTCTTGCTC 59.481 55.000 1.98 0.00 41.64 4.26
29 30 0.179018 ACCCGCAACTTTCTCTTGCT 60.179 50.000 1.98 0.00 41.64 3.91
30 31 0.668535 AACCCGCAACTTTCTCTTGC 59.331 50.000 0.00 0.00 40.61 4.01
31 32 1.946768 TCAACCCGCAACTTTCTCTTG 59.053 47.619 0.00 0.00 0.00 3.02
32 33 1.947456 GTCAACCCGCAACTTTCTCTT 59.053 47.619 0.00 0.00 0.00 2.85
33 34 1.134220 TGTCAACCCGCAACTTTCTCT 60.134 47.619 0.00 0.00 0.00 3.10
34 35 1.264288 CTGTCAACCCGCAACTTTCTC 59.736 52.381 0.00 0.00 0.00 2.87
35 36 1.308998 CTGTCAACCCGCAACTTTCT 58.691 50.000 0.00 0.00 0.00 2.52
36 37 0.317854 GCTGTCAACCCGCAACTTTC 60.318 55.000 0.00 0.00 0.00 2.62
37 38 1.733526 GCTGTCAACCCGCAACTTT 59.266 52.632 0.00 0.00 0.00 2.66
38 39 2.193536 GGCTGTCAACCCGCAACTT 61.194 57.895 0.00 0.00 0.00 2.66
39 40 2.594592 GGCTGTCAACCCGCAACT 60.595 61.111 0.00 0.00 0.00 3.16
40 41 2.904866 TGGCTGTCAACCCGCAAC 60.905 61.111 0.00 0.00 0.00 4.17
41 42 2.046009 TAGTGGCTGTCAACCCGCAA 62.046 55.000 5.76 0.00 34.10 4.85
42 43 2.512355 TAGTGGCTGTCAACCCGCA 61.512 57.895 5.76 0.00 34.10 5.69
43 44 2.033194 GTAGTGGCTGTCAACCCGC 61.033 63.158 0.00 0.00 0.00 6.13
44 45 1.736645 CGTAGTGGCTGTCAACCCG 60.737 63.158 0.00 0.00 0.00 5.28
45 46 1.375523 CCGTAGTGGCTGTCAACCC 60.376 63.158 0.00 0.00 0.00 4.11
46 47 0.604578 TACCGTAGTGGCTGTCAACC 59.395 55.000 0.00 0.00 43.94 3.77
47 48 1.542915 TCTACCGTAGTGGCTGTCAAC 59.457 52.381 5.46 0.00 43.94 3.18
48 49 1.816835 CTCTACCGTAGTGGCTGTCAA 59.183 52.381 5.46 0.00 43.94 3.18
49 50 1.460504 CTCTACCGTAGTGGCTGTCA 58.539 55.000 5.46 0.00 43.94 3.58
50 51 0.100861 GCTCTACCGTAGTGGCTGTC 59.899 60.000 5.46 0.00 43.94 3.51
51 52 0.611062 TGCTCTACCGTAGTGGCTGT 60.611 55.000 19.08 0.00 43.94 4.40
52 53 0.530744 TTGCTCTACCGTAGTGGCTG 59.469 55.000 19.08 5.17 43.94 4.85
53 54 0.531200 GTTGCTCTACCGTAGTGGCT 59.469 55.000 19.08 0.00 43.94 4.75
54 55 0.531200 AGTTGCTCTACCGTAGTGGC 59.469 55.000 14.69 14.69 43.94 5.01
55 56 3.314541 AAAGTTGCTCTACCGTAGTGG 57.685 47.619 5.46 2.05 46.41 4.00
56 57 5.056894 AGTAAAGTTGCTCTACCGTAGTG 57.943 43.478 5.46 4.51 0.00 2.74
57 58 5.718724 AAGTAAAGTTGCTCTACCGTAGT 57.281 39.130 5.46 0.00 0.00 2.73
58 59 6.423001 ACAAAAGTAAAGTTGCTCTACCGTAG 59.577 38.462 0.00 0.00 0.00 3.51
59 60 6.282930 ACAAAAGTAAAGTTGCTCTACCGTA 58.717 36.000 0.00 0.00 0.00 4.02
60 61 5.121105 ACAAAAGTAAAGTTGCTCTACCGT 58.879 37.500 0.00 0.00 0.00 4.83
61 62 5.668558 ACAAAAGTAAAGTTGCTCTACCG 57.331 39.130 0.00 0.00 0.00 4.02
62 63 6.695713 CCAAACAAAAGTAAAGTTGCTCTACC 59.304 38.462 0.00 0.00 0.00 3.18
63 64 7.255569 ACCAAACAAAAGTAAAGTTGCTCTAC 58.744 34.615 0.00 0.00 0.00 2.59
64 65 7.399245 ACCAAACAAAAGTAAAGTTGCTCTA 57.601 32.000 0.00 0.00 0.00 2.43
65 66 6.280855 ACCAAACAAAAGTAAAGTTGCTCT 57.719 33.333 0.00 0.00 0.00 4.09
66 67 6.588373 TCAACCAAACAAAAGTAAAGTTGCTC 59.412 34.615 0.00 0.00 34.73 4.26
67 68 6.367695 GTCAACCAAACAAAAGTAAAGTTGCT 59.632 34.615 0.00 0.00 34.73 3.91
68 69 6.367695 AGTCAACCAAACAAAAGTAAAGTTGC 59.632 34.615 0.00 0.00 34.73 4.17
69 70 7.883229 AGTCAACCAAACAAAAGTAAAGTTG 57.117 32.000 0.00 0.00 35.76 3.16
70 71 8.799367 ACTAGTCAACCAAACAAAAGTAAAGTT 58.201 29.630 0.00 0.00 0.00 2.66
71 72 8.344446 ACTAGTCAACCAAACAAAAGTAAAGT 57.656 30.769 0.00 0.00 0.00 2.66
72 73 9.634163 AAACTAGTCAACCAAACAAAAGTAAAG 57.366 29.630 0.00 0.00 0.00 1.85
73 74 9.413048 CAAACTAGTCAACCAAACAAAAGTAAA 57.587 29.630 0.00 0.00 0.00 2.01
74 75 8.578151 ACAAACTAGTCAACCAAACAAAAGTAA 58.422 29.630 0.00 0.00 0.00 2.24
75 76 8.113173 ACAAACTAGTCAACCAAACAAAAGTA 57.887 30.769 0.00 0.00 0.00 2.24
76 77 6.988522 ACAAACTAGTCAACCAAACAAAAGT 58.011 32.000 0.00 0.00 0.00 2.66
77 78 8.973835 TTACAAACTAGTCAACCAAACAAAAG 57.026 30.769 0.00 0.00 0.00 2.27
78 79 9.930693 AATTACAAACTAGTCAACCAAACAAAA 57.069 25.926 0.00 0.00 0.00 2.44
81 82 8.347035 GCTAATTACAAACTAGTCAACCAAACA 58.653 33.333 0.00 0.00 0.00 2.83
82 83 8.565416 AGCTAATTACAAACTAGTCAACCAAAC 58.435 33.333 0.00 0.00 0.00 2.93
83 84 8.685838 AGCTAATTACAAACTAGTCAACCAAA 57.314 30.769 0.00 0.00 0.00 3.28
84 85 8.564574 CAAGCTAATTACAAACTAGTCAACCAA 58.435 33.333 0.00 0.00 0.00 3.67
85 86 7.717875 ACAAGCTAATTACAAACTAGTCAACCA 59.282 33.333 0.00 0.00 0.00 3.67
86 87 8.095937 ACAAGCTAATTACAAACTAGTCAACC 57.904 34.615 0.00 0.00 0.00 3.77
87 88 9.946165 AAACAAGCTAATTACAAACTAGTCAAC 57.054 29.630 0.00 0.00 0.00 3.18
94 95 9.244799 GCACTAAAAACAAGCTAATTACAAACT 57.755 29.630 0.00 0.00 0.00 2.66
95 96 9.244799 AGCACTAAAAACAAGCTAATTACAAAC 57.755 29.630 0.00 0.00 33.06 2.93
96 97 9.458374 GAGCACTAAAAACAAGCTAATTACAAA 57.542 29.630 0.00 0.00 35.36 2.83
97 98 8.625651 TGAGCACTAAAAACAAGCTAATTACAA 58.374 29.630 0.00 0.00 35.36 2.41
98 99 8.160521 TGAGCACTAAAAACAAGCTAATTACA 57.839 30.769 0.00 0.00 35.36 2.41
99 100 8.902735 GTTGAGCACTAAAAACAAGCTAATTAC 58.097 33.333 0.00 0.00 35.36 1.89
100 101 8.846211 AGTTGAGCACTAAAAACAAGCTAATTA 58.154 29.630 0.00 0.00 35.36 1.40
101 102 7.716612 AGTTGAGCACTAAAAACAAGCTAATT 58.283 30.769 0.00 0.00 35.36 1.40
102 103 7.277174 AGTTGAGCACTAAAAACAAGCTAAT 57.723 32.000 0.00 0.00 35.36 1.73
103 104 6.693315 AGTTGAGCACTAAAAACAAGCTAA 57.307 33.333 0.00 0.00 35.36 3.09
104 105 6.426937 CCTAGTTGAGCACTAAAAACAAGCTA 59.573 38.462 0.00 0.00 37.54 3.32
105 106 5.239525 CCTAGTTGAGCACTAAAAACAAGCT 59.760 40.000 0.00 0.00 37.54 3.74
106 107 5.008712 ACCTAGTTGAGCACTAAAAACAAGC 59.991 40.000 0.00 0.00 37.54 4.01
107 108 6.038271 ACACCTAGTTGAGCACTAAAAACAAG 59.962 38.462 0.00 0.00 37.54 3.16
108 109 5.883673 ACACCTAGTTGAGCACTAAAAACAA 59.116 36.000 0.00 0.00 37.54 2.83
109 110 5.433526 ACACCTAGTTGAGCACTAAAAACA 58.566 37.500 0.00 0.00 37.54 2.83
110 111 6.373186 AACACCTAGTTGAGCACTAAAAAC 57.627 37.500 0.00 0.00 39.49 2.43
123 124 6.811253 TGAAAAATATCGCAACACCTAGTT 57.189 33.333 0.00 0.00 42.42 2.24
124 125 6.608610 GTTGAAAAATATCGCAACACCTAGT 58.391 36.000 0.00 0.00 40.11 2.57
125 126 5.732647 CGTTGAAAAATATCGCAACACCTAG 59.267 40.000 0.00 0.00 40.32 3.02
126 127 5.391097 CCGTTGAAAAATATCGCAACACCTA 60.391 40.000 0.00 0.00 40.32 3.08
127 128 4.472286 CGTTGAAAAATATCGCAACACCT 58.528 39.130 0.00 0.00 40.32 4.00
128 129 3.606346 CCGTTGAAAAATATCGCAACACC 59.394 43.478 0.00 0.00 40.32 4.16
129 130 4.223659 ACCGTTGAAAAATATCGCAACAC 58.776 39.130 0.00 0.00 40.32 3.32
130 131 4.491234 ACCGTTGAAAAATATCGCAACA 57.509 36.364 0.00 0.00 40.32 3.33
131 132 5.815964 AAACCGTTGAAAAATATCGCAAC 57.184 34.783 0.00 0.00 37.76 4.17
139 140 8.908903 TCTGCCATATATAAACCGTTGAAAAAT 58.091 29.630 0.00 0.00 0.00 1.82
140 141 8.282455 TCTGCCATATATAAACCGTTGAAAAA 57.718 30.769 0.00 0.00 0.00 1.94
141 142 7.867305 TCTGCCATATATAAACCGTTGAAAA 57.133 32.000 0.00 0.00 0.00 2.29
142 143 7.867305 TTCTGCCATATATAAACCGTTGAAA 57.133 32.000 0.00 0.00 0.00 2.69
143 144 9.733556 ATATTCTGCCATATATAAACCGTTGAA 57.266 29.630 0.00 0.00 0.00 2.69
144 145 9.378551 GATATTCTGCCATATATAAACCGTTGA 57.621 33.333 0.00 0.00 0.00 3.18
145 146 8.612619 GGATATTCTGCCATATATAAACCGTTG 58.387 37.037 0.00 0.00 0.00 4.10
146 147 8.548877 AGGATATTCTGCCATATATAAACCGTT 58.451 33.333 0.00 0.00 0.00 4.44
147 148 8.090788 AGGATATTCTGCCATATATAAACCGT 57.909 34.615 0.00 0.00 0.00 4.83
220 221 1.075600 ACCACAACCCCCAACCTTG 60.076 57.895 0.00 0.00 0.00 3.61
221 222 1.231928 GACCACAACCCCCAACCTT 59.768 57.895 0.00 0.00 0.00 3.50
222 223 1.699930 AGACCACAACCCCCAACCT 60.700 57.895 0.00 0.00 0.00 3.50
223 224 1.228459 GAGACCACAACCCCCAACC 60.228 63.158 0.00 0.00 0.00 3.77
224 225 0.537371 CAGAGACCACAACCCCCAAC 60.537 60.000 0.00 0.00 0.00 3.77
225 226 1.843421 CAGAGACCACAACCCCCAA 59.157 57.895 0.00 0.00 0.00 4.12
226 227 2.829384 GCAGAGACCACAACCCCCA 61.829 63.158 0.00 0.00 0.00 4.96
227 228 2.034221 GCAGAGACCACAACCCCC 59.966 66.667 0.00 0.00 0.00 5.40
228 229 1.302832 CTGCAGAGACCACAACCCC 60.303 63.158 8.42 0.00 0.00 4.95
229 230 1.968540 GCTGCAGAGACCACAACCC 60.969 63.158 20.43 0.00 0.00 4.11
230 231 1.968540 GGCTGCAGAGACCACAACC 60.969 63.158 20.43 1.06 0.00 3.77
231 232 0.536006 AAGGCTGCAGAGACCACAAC 60.536 55.000 20.43 0.00 0.00 3.32
232 233 0.535780 CAAGGCTGCAGAGACCACAA 60.536 55.000 20.43 0.00 0.00 3.33
233 234 1.071987 CAAGGCTGCAGAGACCACA 59.928 57.895 20.43 0.00 0.00 4.17
234 235 3.978272 CAAGGCTGCAGAGACCAC 58.022 61.111 20.43 0.00 0.00 4.16
244 245 1.131883 GTGAAGCTATGTGCAAGGCTG 59.868 52.381 0.00 0.00 45.94 4.85
245 246 1.457346 GTGAAGCTATGTGCAAGGCT 58.543 50.000 0.00 0.00 45.94 4.58
246 247 0.453390 GGTGAAGCTATGTGCAAGGC 59.547 55.000 0.00 0.00 45.94 4.35
247 248 1.741706 CTGGTGAAGCTATGTGCAAGG 59.258 52.381 0.00 0.00 45.94 3.61
248 249 2.161012 CACTGGTGAAGCTATGTGCAAG 59.839 50.000 0.00 0.00 45.94 4.01
249 250 2.153645 CACTGGTGAAGCTATGTGCAA 58.846 47.619 0.00 0.00 45.94 4.08
250 251 1.812235 CACTGGTGAAGCTATGTGCA 58.188 50.000 0.00 0.00 45.94 4.57
251 252 0.449388 GCACTGGTGAAGCTATGTGC 59.551 55.000 4.79 0.00 42.69 4.57
252 253 1.089920 GGCACTGGTGAAGCTATGTG 58.910 55.000 4.79 0.00 0.00 3.21
253 254 0.391661 CGGCACTGGTGAAGCTATGT 60.392 55.000 4.79 0.00 0.00 2.29
254 255 1.709147 GCGGCACTGGTGAAGCTATG 61.709 60.000 4.79 0.00 33.77 2.23
255 256 1.450312 GCGGCACTGGTGAAGCTAT 60.450 57.895 4.79 0.00 33.77 2.97
256 257 1.254975 TAGCGGCACTGGTGAAGCTA 61.255 55.000 18.77 18.77 42.02 3.32
257 258 1.903877 ATAGCGGCACTGGTGAAGCT 61.904 55.000 20.21 20.21 43.43 3.74
258 259 1.450312 ATAGCGGCACTGGTGAAGC 60.450 57.895 1.45 8.51 35.69 3.86
259 260 0.391661 ACATAGCGGCACTGGTGAAG 60.392 55.000 1.45 0.00 0.00 3.02
260 261 0.036164 AACATAGCGGCACTGGTGAA 59.964 50.000 1.45 0.00 0.00 3.18
261 262 0.036164 AAACATAGCGGCACTGGTGA 59.964 50.000 1.45 0.00 0.00 4.02
262 263 0.881118 AAAACATAGCGGCACTGGTG 59.119 50.000 1.45 0.00 0.00 4.17
263 264 1.616159 AAAAACATAGCGGCACTGGT 58.384 45.000 1.45 0.00 0.00 4.00
280 281 8.722394 TGTATCATGTGTGTAAGCGATTAAAAA 58.278 29.630 0.00 0.00 0.00 1.94
281 282 8.257830 TGTATCATGTGTGTAAGCGATTAAAA 57.742 30.769 0.00 0.00 0.00 1.52
282 283 7.835634 TGTATCATGTGTGTAAGCGATTAAA 57.164 32.000 0.00 0.00 0.00 1.52
283 284 7.547722 AGTTGTATCATGTGTGTAAGCGATTAA 59.452 33.333 0.00 0.00 0.00 1.40
284 285 7.039270 AGTTGTATCATGTGTGTAAGCGATTA 58.961 34.615 0.00 0.00 0.00 1.75
285 286 5.874810 AGTTGTATCATGTGTGTAAGCGATT 59.125 36.000 0.00 0.00 0.00 3.34
286 287 5.419542 AGTTGTATCATGTGTGTAAGCGAT 58.580 37.500 0.00 0.00 0.00 4.58
287 288 4.816392 AGTTGTATCATGTGTGTAAGCGA 58.184 39.130 0.00 0.00 0.00 4.93
288 289 4.032900 GGAGTTGTATCATGTGTGTAAGCG 59.967 45.833 0.00 0.00 0.00 4.68
289 290 4.032900 CGGAGTTGTATCATGTGTGTAAGC 59.967 45.833 0.00 0.00 0.00 3.09
290 291 4.032900 GCGGAGTTGTATCATGTGTGTAAG 59.967 45.833 0.00 0.00 0.00 2.34
291 292 3.930229 GCGGAGTTGTATCATGTGTGTAA 59.070 43.478 0.00 0.00 0.00 2.41
292 293 3.517602 GCGGAGTTGTATCATGTGTGTA 58.482 45.455 0.00 0.00 0.00 2.90
293 294 2.346803 GCGGAGTTGTATCATGTGTGT 58.653 47.619 0.00 0.00 0.00 3.72
294 295 1.324435 CGCGGAGTTGTATCATGTGTG 59.676 52.381 0.00 0.00 0.00 3.82
295 296 1.640428 CGCGGAGTTGTATCATGTGT 58.360 50.000 0.00 0.00 0.00 3.72
296 297 0.301687 GCGCGGAGTTGTATCATGTG 59.698 55.000 8.83 0.00 0.00 3.21
297 298 1.145759 CGCGCGGAGTTGTATCATGT 61.146 55.000 24.84 0.00 0.00 3.21
298 299 1.559814 CGCGCGGAGTTGTATCATG 59.440 57.895 24.84 0.00 0.00 3.07
299 300 1.591594 CCGCGCGGAGTTGTATCAT 60.592 57.895 44.86 0.00 37.50 2.45
300 301 2.202690 CCGCGCGGAGTTGTATCA 60.203 61.111 44.86 0.00 37.50 2.15
310 311 2.960129 GTATCTCAACCCGCGCGG 60.960 66.667 41.00 41.00 37.81 6.46
311 312 1.752501 CTTGTATCTCAACCCGCGCG 61.753 60.000 25.67 25.67 32.18 6.86
312 313 0.459585 TCTTGTATCTCAACCCGCGC 60.460 55.000 0.00 0.00 32.18 6.86
313 314 2.004583 TTCTTGTATCTCAACCCGCG 57.995 50.000 0.00 0.00 32.18 6.46
314 315 3.312697 GGATTTCTTGTATCTCAACCCGC 59.687 47.826 0.00 0.00 32.18 6.13
315 316 4.513442 TGGATTTCTTGTATCTCAACCCG 58.487 43.478 0.00 0.00 32.18 5.28
316 317 5.946377 ACTTGGATTTCTTGTATCTCAACCC 59.054 40.000 0.00 0.00 32.18 4.11
317 318 7.281100 CCTACTTGGATTTCTTGTATCTCAACC 59.719 40.741 0.00 0.00 38.35 3.77
318 319 7.824779 ACCTACTTGGATTTCTTGTATCTCAAC 59.175 37.037 0.00 0.00 39.71 3.18
319 320 7.918076 ACCTACTTGGATTTCTTGTATCTCAA 58.082 34.615 0.00 0.00 39.71 3.02
320 321 7.496346 ACCTACTTGGATTTCTTGTATCTCA 57.504 36.000 0.00 0.00 39.71 3.27
321 322 6.697892 CGACCTACTTGGATTTCTTGTATCTC 59.302 42.308 0.00 0.00 39.71 2.75
322 323 6.574350 CGACCTACTTGGATTTCTTGTATCT 58.426 40.000 0.00 0.00 39.71 1.98
323 324 5.234543 GCGACCTACTTGGATTTCTTGTATC 59.765 44.000 0.00 0.00 39.71 2.24
324 325 5.116882 GCGACCTACTTGGATTTCTTGTAT 58.883 41.667 0.00 0.00 39.71 2.29
330 331 2.093658 TGAGGCGACCTACTTGGATTTC 60.094 50.000 0.00 0.00 39.71 2.17
337 338 2.952978 CTCTATGTGAGGCGACCTACTT 59.047 50.000 0.00 0.00 39.08 2.24
340 341 2.950309 GTTCTCTATGTGAGGCGACCTA 59.050 50.000 0.00 0.00 42.86 3.08
348 349 9.994432 GGAATTTAAACATGTTCTCTATGTGAG 57.006 33.333 12.39 0.00 43.96 3.51
396 397 9.413734 ACTAGGAAATTTGGAAAGATGGATTAG 57.586 33.333 0.00 0.00 0.00 1.73
431 432 7.931015 ATGGTAGGTCTAGGATACATTTCAA 57.069 36.000 0.00 0.00 41.41 2.69
438 439 7.589958 CCATGATATGGTAGGTCTAGGATAC 57.410 44.000 0.00 0.00 45.54 2.24
469 470 2.990740 TGGGTGCCCTGATAACTTTT 57.009 45.000 8.91 0.00 36.94 2.27
473 474 3.290948 TTACATGGGTGCCCTGATAAC 57.709 47.619 8.91 0.00 36.94 1.89
474 475 3.525609 TCTTTACATGGGTGCCCTGATAA 59.474 43.478 8.91 1.89 36.94 1.75
475 476 3.119319 TCTTTACATGGGTGCCCTGATA 58.881 45.455 8.91 0.00 36.94 2.15
477 478 1.281867 CTCTTTACATGGGTGCCCTGA 59.718 52.381 8.91 0.00 36.94 3.86
486 492 1.737793 GCCGGTGAACTCTTTACATGG 59.262 52.381 1.90 0.00 0.00 3.66
488 494 2.038557 ACTGCCGGTGAACTCTTTACAT 59.961 45.455 1.90 0.00 0.00 2.29
511 517 5.123936 GGATCGGTAGTAGGCATTTTCTTT 58.876 41.667 0.00 0.00 0.00 2.52
521 527 1.162181 TCGTGCGGATCGGTAGTAGG 61.162 60.000 1.93 0.00 0.00 3.18
522 528 0.659427 TTCGTGCGGATCGGTAGTAG 59.341 55.000 1.93 0.00 0.00 2.57
523 529 0.378257 GTTCGTGCGGATCGGTAGTA 59.622 55.000 1.93 0.00 0.00 1.82
524 530 1.138247 GTTCGTGCGGATCGGTAGT 59.862 57.895 1.93 0.00 0.00 2.73
525 531 1.588139 GGTTCGTGCGGATCGGTAG 60.588 63.158 1.93 0.00 0.00 3.18
526 532 2.491152 GGTTCGTGCGGATCGGTA 59.509 61.111 1.93 0.00 0.00 4.02
527 533 4.789075 CGGTTCGTGCGGATCGGT 62.789 66.667 0.00 0.00 0.00 4.69
528 534 4.789075 ACGGTTCGTGCGGATCGG 62.789 66.667 10.38 0.00 39.18 4.18
529 535 2.807895 AACGGTTCGTGCGGATCG 60.808 61.111 3.80 3.80 39.99 3.69
530 536 1.286354 TTCAACGGTTCGTGCGGATC 61.286 55.000 0.00 0.00 39.99 3.36
531 537 0.881159 TTTCAACGGTTCGTGCGGAT 60.881 50.000 0.00 0.00 39.99 4.18
532 538 0.881159 ATTTCAACGGTTCGTGCGGA 60.881 50.000 0.00 0.00 39.99 5.54
541 547 2.750712 CGGTATTTCCCATTTCAACGGT 59.249 45.455 0.00 0.00 0.00 4.83
545 551 3.267291 TCTCCCGGTATTTCCCATTTCAA 59.733 43.478 0.00 0.00 0.00 2.69
551 557 1.961133 ACTTCTCCCGGTATTTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
559 565 0.760572 TTCGGAAAACTTCTCCCGGT 59.239 50.000 0.00 0.00 42.03 5.28
585 591 5.679638 GCCTTGCTCGATGGTGATTAATTTT 60.680 40.000 0.00 0.00 0.00 1.82
622 629 1.938329 GACGGCTACGCTACGAAGC 60.938 63.158 0.00 0.00 46.04 3.86
650 657 3.142838 ATACCGTCCGTCGTGGGG 61.143 66.667 0.00 0.00 38.76 4.96
772 788 0.338120 AGAGAGGAAGGTGAGGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
774 790 0.336737 GGAGAGAGGAAGGTGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
775 791 0.689412 GGGAGAGAGGAAGGTGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
842 876 2.258591 CGAGTGGAGTGGACACCG 59.741 66.667 0.00 0.00 39.63 4.94
878 912 1.087501 GGGTCGGTCAAGATTCAAGC 58.912 55.000 0.00 0.00 0.00 4.01
954 988 4.554363 CCGTCCGCAGCTCGTAGG 62.554 72.222 5.15 0.00 36.19 3.18
1062 1096 2.522436 TTGGTCCTGACGTCCCGT 60.522 61.111 14.12 0.00 45.10 5.28
1126 1160 5.104109 ACAGAGGGGGATGAATTTAATTCGA 60.104 40.000 12.30 3.41 42.15 3.71
1244 1280 1.795768 TCAGCCGTTGAGCAAACTAG 58.204 50.000 0.00 0.00 36.56 2.57
1245 1281 2.472695 ATCAGCCGTTGAGCAAACTA 57.527 45.000 1.46 0.00 39.68 2.24
1246 1282 1.537202 GAATCAGCCGTTGAGCAAACT 59.463 47.619 1.46 0.00 39.68 2.66
1247 1283 1.725931 CGAATCAGCCGTTGAGCAAAC 60.726 52.381 0.00 0.00 39.68 2.93
1248 1284 0.516877 CGAATCAGCCGTTGAGCAAA 59.483 50.000 0.00 0.00 39.68 3.68
1251 1287 1.741770 ACCGAATCAGCCGTTGAGC 60.742 57.895 0.00 0.00 39.68 4.26
1253 1289 2.032634 GCACCGAATCAGCCGTTGA 61.033 57.895 0.00 0.00 40.85 3.18
1254 1290 0.739462 TAGCACCGAATCAGCCGTTG 60.739 55.000 0.00 0.00 0.00 4.10
1256 1292 1.153628 GTAGCACCGAATCAGCCGT 60.154 57.895 0.00 0.00 0.00 5.68
1257 1293 2.230940 CGTAGCACCGAATCAGCCG 61.231 63.158 0.00 0.00 0.00 5.52
1258 1294 0.101759 TACGTAGCACCGAATCAGCC 59.898 55.000 1.84 0.00 0.00 4.85
1274 1310 2.161609 GGAACCACTCAAGCCAAATACG 59.838 50.000 0.00 0.00 0.00 3.06
1275 1311 2.161609 CGGAACCACTCAAGCCAAATAC 59.838 50.000 0.00 0.00 0.00 1.89
1279 1315 1.228124 CCGGAACCACTCAAGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
1320 1356 5.114780 CACAGTGGATCATCGAATCTCTTT 58.885 41.667 0.00 0.00 0.00 2.52
1428 1468 4.935819 GCGATGTGAACTATATTTCGCTC 58.064 43.478 15.00 10.05 44.96 5.03
1432 1472 7.328737 ACCGAATAGCGATGTGAACTATATTTC 59.671 37.037 0.00 0.00 44.57 2.17
1469 1513 2.217750 TGACCGGTCAAGTGTGATTTG 58.782 47.619 34.60 0.00 36.53 2.32
1580 1624 2.292267 AGATGCTTGCCCGATTTACAG 58.708 47.619 0.00 0.00 0.00 2.74
1588 1632 1.600957 CTGTGAATAGATGCTTGCCCG 59.399 52.381 0.00 0.00 0.00 6.13
1741 2786 2.102925 CACCTTGAACAAGCCAACCATT 59.897 45.455 8.81 0.00 37.11 3.16
1815 2860 6.393171 AGCAGACAGAAATTTTGCTAATTCC 58.607 36.000 11.64 0.00 42.81 3.01
1978 3032 5.128205 TGTTGAGAGCCAATGATGATAAGG 58.872 41.667 0.00 0.00 37.08 2.69
2118 3312 2.504367 AGGTGAATGGTTTTCTCCACG 58.496 47.619 8.61 0.00 40.51 4.94
3067 4579 1.604604 ACCACTGTGCGCATAAAGTT 58.395 45.000 15.91 1.21 0.00 2.66
3083 4595 8.294954 TCAAACTACACAAAATAGGAAAACCA 57.705 30.769 0.00 0.00 0.00 3.67
3411 4924 2.691526 ACGGTCGCTTCCAATAGTCATA 59.308 45.455 0.00 0.00 0.00 2.15
3681 5201 7.373493 CAAAGCTTCTTTTGAGACAATACCAT 58.627 34.615 0.00 0.00 39.79 3.55
3796 5373 3.934068 TCCTTGGTCGATTTGGACTAAC 58.066 45.455 0.00 0.00 34.32 2.34
4085 5670 5.738619 ATCATCAATACAATGGCATGCAT 57.261 34.783 21.36 8.40 0.00 3.96
4506 6109 3.847042 TCCCTTCTAGAAAGGACCTCA 57.153 47.619 17.40 0.00 39.81 3.86
4609 6217 2.543578 TCAGCGACCTGAATTGCAC 58.456 52.632 0.00 0.00 44.79 4.57
4649 6271 3.393800 GCCGACAAGCATCACATATAGT 58.606 45.455 0.00 0.00 0.00 2.12
4745 6367 2.157738 GGAATGAGGATATGGTGCAGC 58.842 52.381 9.47 9.47 0.00 5.25
4855 6483 1.392589 TCCGGACGTAATCAGGTACC 58.607 55.000 2.73 2.73 42.90 3.34
4973 6601 3.875727 CTGGTGAGAATGCAGGTATTCAG 59.124 47.826 11.72 0.00 39.08 3.02
4999 6627 1.737838 TGGTTATTCGCTGCAGGAAG 58.262 50.000 17.12 0.00 0.00 3.46
5408 7045 4.142556 ACCAACAACGGTTACAGAAAACAG 60.143 41.667 0.00 0.00 34.91 3.16
5411 7048 5.064962 CACTACCAACAACGGTTACAGAAAA 59.935 40.000 0.00 0.00 40.67 2.29
5429 7066 2.953466 TTATCCACAGCGTCACTACC 57.047 50.000 0.00 0.00 0.00 3.18
5465 7104 4.082787 GGACACCAAACACATATGGAAGTG 60.083 45.833 7.80 8.07 39.12 3.16
5527 7166 5.243283 TCGGAGGGAGTAATATAAACTGCTC 59.757 44.000 8.80 5.62 35.78 4.26
5528 7167 5.145564 TCGGAGGGAGTAATATAAACTGCT 58.854 41.667 8.80 0.00 35.78 4.24
5540 7179 2.599408 ACAACTTCTCGGAGGGAGTA 57.401 50.000 12.97 0.00 43.60 2.59
5542 7181 2.448453 AGTACAACTTCTCGGAGGGAG 58.552 52.381 4.96 6.48 44.58 4.30
5543 7182 2.599408 AGTACAACTTCTCGGAGGGA 57.401 50.000 4.96 0.00 0.00 4.20
5544 7183 4.492611 GTTTAGTACAACTTCTCGGAGGG 58.507 47.826 4.96 1.52 0.00 4.30
5545 7184 4.021719 TGGTTTAGTACAACTTCTCGGAGG 60.022 45.833 4.96 0.00 0.00 4.30
5546 7185 5.130292 TGGTTTAGTACAACTTCTCGGAG 57.870 43.478 0.00 0.00 0.00 4.63
5548 7187 3.678548 GCTGGTTTAGTACAACTTCTCGG 59.321 47.826 0.00 0.00 0.00 4.63
5549 7188 3.364023 CGCTGGTTTAGTACAACTTCTCG 59.636 47.826 0.00 0.00 0.00 4.04
5550 7189 4.385146 GTCGCTGGTTTAGTACAACTTCTC 59.615 45.833 0.00 0.00 0.00 2.87
5551 7190 4.202182 TGTCGCTGGTTTAGTACAACTTCT 60.202 41.667 0.00 0.00 0.00 2.85
5552 7191 4.053295 TGTCGCTGGTTTAGTACAACTTC 58.947 43.478 0.00 0.00 0.00 3.01
5554 7193 3.738830 TGTCGCTGGTTTAGTACAACT 57.261 42.857 0.00 0.00 0.00 3.16
5555 7194 3.805971 ACTTGTCGCTGGTTTAGTACAAC 59.194 43.478 0.00 0.00 33.64 3.32
5556 7195 4.062677 ACTTGTCGCTGGTTTAGTACAA 57.937 40.909 0.00 0.00 34.99 2.41
5557 7196 3.738830 ACTTGTCGCTGGTTTAGTACA 57.261 42.857 0.00 0.00 0.00 2.90
5558 7197 7.998753 ATTATACTTGTCGCTGGTTTAGTAC 57.001 36.000 0.00 0.00 0.00 2.73
5559 7198 9.687210 CATATTATACTTGTCGCTGGTTTAGTA 57.313 33.333 0.00 0.00 0.00 1.82
5560 7199 7.656137 CCATATTATACTTGTCGCTGGTTTAGT 59.344 37.037 0.00 0.00 0.00 2.24
5561 7200 7.117812 CCCATATTATACTTGTCGCTGGTTTAG 59.882 40.741 0.00 0.00 0.00 1.85
5563 7202 5.763204 CCCATATTATACTTGTCGCTGGTTT 59.237 40.000 0.00 0.00 0.00 3.27
5564 7203 5.163237 ACCCATATTATACTTGTCGCTGGTT 60.163 40.000 0.00 0.00 0.00 3.67
5566 7205 4.894784 ACCCATATTATACTTGTCGCTGG 58.105 43.478 0.00 0.00 0.00 4.85
5567 7206 4.621460 CGACCCATATTATACTTGTCGCTG 59.379 45.833 0.00 0.00 37.84 5.18
5568 7207 4.321750 CCGACCCATATTATACTTGTCGCT 60.322 45.833 11.31 0.00 41.83 4.93
5569 7208 3.924686 CCGACCCATATTATACTTGTCGC 59.075 47.826 11.31 0.00 41.83 5.19
5570 7209 5.381174 TCCGACCCATATTATACTTGTCG 57.619 43.478 0.00 0.00 42.55 4.35
5571 7210 5.337330 CCCTCCGACCCATATTATACTTGTC 60.337 48.000 0.00 0.00 0.00 3.18
5572 7211 4.530946 CCCTCCGACCCATATTATACTTGT 59.469 45.833 0.00 0.00 0.00 3.16
5574 7213 5.019657 TCCCTCCGACCCATATTATACTT 57.980 43.478 0.00 0.00 0.00 2.24
5575 7214 4.045590 ACTCCCTCCGACCCATATTATACT 59.954 45.833 0.00 0.00 0.00 2.12
5576 7215 4.351127 ACTCCCTCCGACCCATATTATAC 58.649 47.826 0.00 0.00 0.00 1.47
5577 7216 4.687262 ACTCCCTCCGACCCATATTATA 57.313 45.455 0.00 0.00 0.00 0.98
5578 7217 3.562108 ACTCCCTCCGACCCATATTAT 57.438 47.619 0.00 0.00 0.00 1.28
5579 7218 3.245514 CCTACTCCCTCCGACCCATATTA 60.246 52.174 0.00 0.00 0.00 0.98
5580 7219 2.492940 CCTACTCCCTCCGACCCATATT 60.493 54.545 0.00 0.00 0.00 1.28
5581 7220 1.077334 CCTACTCCCTCCGACCCATAT 59.923 57.143 0.00 0.00 0.00 1.78
5582 7221 0.481567 CCTACTCCCTCCGACCCATA 59.518 60.000 0.00 0.00 0.00 2.74
5584 7223 1.807771 AACCTACTCCCTCCGACCCA 61.808 60.000 0.00 0.00 0.00 4.51
5586 7225 1.273759 AAAACCTACTCCCTCCGACC 58.726 55.000 0.00 0.00 0.00 4.79
5604 7243 2.095718 GCCCGCAAACAAACAAACAAAA 60.096 40.909 0.00 0.00 0.00 2.44
5606 7245 1.079503 GCCCGCAAACAAACAAACAA 58.920 45.000 0.00 0.00 0.00 2.83
5609 7248 1.086634 GCTGCCCGCAAACAAACAAA 61.087 50.000 0.00 0.00 38.92 2.83
5611 7250 2.105930 GCTGCCCGCAAACAAACA 59.894 55.556 0.00 0.00 38.92 2.83
5621 7260 4.024048 CCAACTAATATAAACTGCTGCCCG 60.024 45.833 0.00 0.00 0.00 6.13
5622 7261 5.130350 TCCAACTAATATAAACTGCTGCCC 58.870 41.667 0.00 0.00 0.00 5.36
5624 7263 5.239525 CCCTCCAACTAATATAAACTGCTGC 59.760 44.000 0.00 0.00 0.00 5.25
5625 7264 6.591935 TCCCTCCAACTAATATAAACTGCTG 58.408 40.000 0.00 0.00 0.00 4.41
5626 7265 6.824958 TCCCTCCAACTAATATAAACTGCT 57.175 37.500 0.00 0.00 0.00 4.24
5628 7267 7.442656 ACGATCCCTCCAACTAATATAAACTG 58.557 38.462 0.00 0.00 0.00 3.16
5629 7268 7.256225 GGACGATCCCTCCAACTAATATAAACT 60.256 40.741 0.00 0.00 0.00 2.66
5631 7270 6.785963 AGGACGATCCCTCCAACTAATATAAA 59.214 38.462 6.81 0.00 37.19 1.40
5632 7271 6.320518 AGGACGATCCCTCCAACTAATATAA 58.679 40.000 6.81 0.00 37.19 0.98
5633 7272 5.900437 AGGACGATCCCTCCAACTAATATA 58.100 41.667 6.81 0.00 37.19 0.86
5634 7273 4.753186 AGGACGATCCCTCCAACTAATAT 58.247 43.478 6.81 0.00 37.19 1.28
5635 7274 4.194678 AGGACGATCCCTCCAACTAATA 57.805 45.455 6.81 0.00 37.19 0.98
5636 7275 3.047695 AGGACGATCCCTCCAACTAAT 57.952 47.619 6.81 0.00 37.19 1.73
5637 7276 2.544844 AGGACGATCCCTCCAACTAA 57.455 50.000 6.81 0.00 37.19 2.24
5681 7532 2.688446 CGCAACTGGTCATCTAGTAGGA 59.312 50.000 0.00 0.00 34.34 2.94
5682 7533 2.799917 GCGCAACTGGTCATCTAGTAGG 60.800 54.545 0.30 0.00 34.34 3.18
5792 7643 3.750652 TCAAACATGCAGCGATGACTTTA 59.249 39.130 4.02 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.