Multiple sequence alignment - TraesCS2A01G163600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G163600 chr2A 100.000 5162 0 0 1 5162 115752113 115757274 0.000000e+00 9533.0
1 TraesCS2A01G163600 chr2B 91.984 4678 217 76 358 4953 164936187 164940788 0.000000e+00 6416.0
2 TraesCS2A01G163600 chr2B 87.879 231 22 5 4526 4754 164940330 164940556 3.060000e-67 267.0
3 TraesCS2A01G163600 chr2B 96.296 54 2 0 2010 2063 535264259 535264312 7.120000e-14 89.8
4 TraesCS2A01G163600 chr2B 89.855 69 3 4 277 343 164936186 164936252 9.210000e-13 86.1
5 TraesCS2A01G163600 chr2B 88.525 61 6 1 4905 4965 744182400 744182341 7.170000e-09 73.1
6 TraesCS2A01G163600 chr2B 80.952 84 10 6 4542 4623 639427046 639426967 1.550000e-05 62.1
7 TraesCS2A01G163600 chr2D 93.777 4130 160 35 974 5030 114532261 114536366 0.000000e+00 6113.0
8 TraesCS2A01G163600 chr2D 88.008 517 25 13 358 859 114531338 114531832 1.250000e-160 577.0
9 TraesCS2A01G163600 chr2D 81.081 370 34 17 1391 1759 11205571 11205905 3.960000e-66 263.0
10 TraesCS2A01G163600 chr2D 80.709 254 31 10 97 343 114531162 114531404 1.140000e-41 182.0
11 TraesCS2A01G163600 chr2D 74.803 254 46 14 4492 4741 315092525 315092286 1.180000e-16 99.0
12 TraesCS2A01G163600 chr2D 98.039 51 1 0 2010 2060 11205966 11206016 7.120000e-14 89.8
13 TraesCS2A01G163600 chr7A 81.118 662 107 14 1399 2056 603588580 603589227 9.910000e-142 514.0
14 TraesCS2A01G163600 chr6D 81.622 370 32 17 1391 1759 47023785 47024119 1.830000e-69 274.0
15 TraesCS2A01G163600 chr6D 94.444 54 3 0 2010 2063 47024180 47024233 3.310000e-12 84.2
16 TraesCS2A01G163600 chr3D 80.533 375 37 18 1386 1759 488862700 488862361 6.630000e-64 255.0
17 TraesCS2A01G163600 chr3D 98.148 54 1 0 2010 2063 488862300 488862247 1.530000e-15 95.3
18 TraesCS2A01G163600 chr1D 84.906 212 30 2 1317 1527 305111549 305111759 4.050000e-51 213.0
19 TraesCS2A01G163600 chr1D 75.138 181 29 15 4548 4720 86107934 86107762 2.580000e-08 71.3
20 TraesCS2A01G163600 chr1A 84.434 212 31 2 1317 1527 382228726 382228936 1.880000e-49 207.0
21 TraesCS2A01G163600 chr1B 83.256 215 34 2 1317 1530 412258137 412257924 4.080000e-46 196.0
22 TraesCS2A01G163600 chr5B 98.148 54 1 0 2010 2063 468652535 468652588 1.530000e-15 95.3
23 TraesCS2A01G163600 chr5A 83.158 95 11 5 4533 4626 317243628 317243538 1.190000e-11 82.4
24 TraesCS2A01G163600 chr3A 84.211 76 8 4 4540 4614 162482579 162482507 2.580000e-08 71.3
25 TraesCS2A01G163600 chr3B 82.716 81 9 5 4535 4615 727236862 727236787 3.340000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G163600 chr2A 115752113 115757274 5161 False 9533.000000 9533 100.000 1 5162 1 chr2A.!!$F1 5161
1 TraesCS2A01G163600 chr2B 164936186 164940788 4602 False 2256.366667 6416 89.906 277 4953 3 chr2B.!!$F2 4676
2 TraesCS2A01G163600 chr2D 114531162 114536366 5204 False 2290.666667 6113 87.498 97 5030 3 chr2D.!!$F2 4933
3 TraesCS2A01G163600 chr7A 603588580 603589227 647 False 514.000000 514 81.118 1399 2056 1 chr7A.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 539 0.034756 TACACACACGCCATCTTGCT 59.965 50.000 0.00 0.0 0.0 3.91 F
1617 1965 0.319727 CTGATCCGATCTGCTGCTCC 60.320 60.000 9.78 0.0 0.0 4.70 F
2875 3235 0.458669 ATAGGTACCGTGAGTTGGCG 59.541 55.000 6.18 0.0 0.0 5.69 F
3325 3685 1.227973 GCCGGGAAGGATCACCATC 60.228 63.158 2.18 0.0 45.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2626 0.531200 CTCGTCCACTCCTACCAACC 59.469 60.000 0.00 0.00 0.00 3.77 R
3418 3778 1.602323 GTTTCCGTGCATGGGGTCA 60.602 57.895 24.78 2.16 0.00 4.02 R
3906 4288 0.179234 TTCCTTCTTGGTCGTGCACA 59.821 50.000 18.64 0.81 37.07 4.57 R
4755 5144 0.250640 CTCCCTCAGTATGGCATGGC 60.251 60.000 13.29 13.29 36.16 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.519540 GGCCACAAATTCTTTTAGCTCA 57.480 40.909 0.00 0.00 0.00 4.26
22 23 5.077134 GGCCACAAATTCTTTTAGCTCAT 57.923 39.130 0.00 0.00 0.00 2.90
23 24 5.482006 GGCCACAAATTCTTTTAGCTCATT 58.518 37.500 0.00 0.00 0.00 2.57
24 25 5.934043 GGCCACAAATTCTTTTAGCTCATTT 59.066 36.000 0.00 0.00 0.00 2.32
25 26 6.128472 GGCCACAAATTCTTTTAGCTCATTTG 60.128 38.462 0.00 0.00 39.64 2.32
26 27 6.646240 GCCACAAATTCTTTTAGCTCATTTGA 59.354 34.615 9.34 0.00 37.95 2.69
27 28 7.148689 GCCACAAATTCTTTTAGCTCATTTGAG 60.149 37.037 9.34 3.13 44.75 3.02
28 29 7.869429 CCACAAATTCTTTTAGCTCATTTGAGT 59.131 33.333 9.21 0.00 43.85 3.41
29 30 9.252962 CACAAATTCTTTTAGCTCATTTGAGTT 57.747 29.630 9.21 5.86 43.85 3.01
30 31 9.468532 ACAAATTCTTTTAGCTCATTTGAGTTC 57.531 29.630 9.21 0.00 43.85 3.01
31 32 8.633408 CAAATTCTTTTAGCTCATTTGAGTTCG 58.367 33.333 9.21 0.00 43.85 3.95
32 33 5.862924 TCTTTTAGCTCATTTGAGTTCGG 57.137 39.130 9.21 0.00 43.85 4.30
33 34 4.695455 TCTTTTAGCTCATTTGAGTTCGGG 59.305 41.667 9.21 0.00 43.85 5.14
34 35 3.973206 TTAGCTCATTTGAGTTCGGGA 57.027 42.857 9.21 0.00 43.85 5.14
35 36 2.393271 AGCTCATTTGAGTTCGGGAG 57.607 50.000 9.21 0.00 43.85 4.30
36 37 0.729690 GCTCATTTGAGTTCGGGAGC 59.270 55.000 9.21 0.00 43.85 4.70
37 38 1.945819 GCTCATTTGAGTTCGGGAGCA 60.946 52.381 9.21 0.00 45.23 4.26
38 39 2.005451 CTCATTTGAGTTCGGGAGCAG 58.995 52.381 0.00 0.00 37.40 4.24
39 40 1.623311 TCATTTGAGTTCGGGAGCAGA 59.377 47.619 0.00 0.00 0.00 4.26
40 41 2.038426 TCATTTGAGTTCGGGAGCAGAA 59.962 45.455 0.00 0.00 0.00 3.02
41 42 2.169832 TTTGAGTTCGGGAGCAGAAG 57.830 50.000 0.00 0.00 0.00 2.85
42 43 1.338107 TTGAGTTCGGGAGCAGAAGA 58.662 50.000 0.00 0.00 0.00 2.87
43 44 1.561643 TGAGTTCGGGAGCAGAAGAT 58.438 50.000 0.00 0.00 0.00 2.40
44 45 1.205655 TGAGTTCGGGAGCAGAAGATG 59.794 52.381 0.00 0.00 0.00 2.90
45 46 1.478510 GAGTTCGGGAGCAGAAGATGA 59.521 52.381 0.00 0.00 0.00 2.92
46 47 1.205893 AGTTCGGGAGCAGAAGATGAC 59.794 52.381 0.00 0.00 0.00 3.06
47 48 1.205893 GTTCGGGAGCAGAAGATGACT 59.794 52.381 0.00 0.00 0.00 3.41
48 49 1.561643 TCGGGAGCAGAAGATGACTT 58.438 50.000 0.00 0.00 39.24 3.01
49 50 1.902508 TCGGGAGCAGAAGATGACTTT 59.097 47.619 0.00 0.00 36.39 2.66
50 51 2.093973 TCGGGAGCAGAAGATGACTTTC 60.094 50.000 0.00 0.00 36.39 2.62
51 52 2.275318 GGGAGCAGAAGATGACTTTCG 58.725 52.381 0.00 0.00 36.39 3.46
52 53 2.093973 GGGAGCAGAAGATGACTTTCGA 60.094 50.000 0.00 0.00 36.39 3.71
53 54 3.431486 GGGAGCAGAAGATGACTTTCGAT 60.431 47.826 0.00 0.00 36.39 3.59
54 55 3.801594 GGAGCAGAAGATGACTTTCGATC 59.198 47.826 0.00 0.00 36.39 3.69
55 56 4.441356 GGAGCAGAAGATGACTTTCGATCT 60.441 45.833 0.00 0.00 36.39 2.75
56 57 5.221145 GGAGCAGAAGATGACTTTCGATCTA 60.221 44.000 0.00 0.00 36.39 1.98
57 58 6.214191 AGCAGAAGATGACTTTCGATCTAA 57.786 37.500 0.00 0.00 36.39 2.10
58 59 6.272318 AGCAGAAGATGACTTTCGATCTAAG 58.728 40.000 0.00 0.00 36.39 2.18
59 60 6.039616 GCAGAAGATGACTTTCGATCTAAGT 58.960 40.000 9.15 9.15 38.49 2.24
60 61 6.533367 GCAGAAGATGACTTTCGATCTAAGTT 59.467 38.462 10.33 0.00 36.04 2.66
61 62 7.064016 GCAGAAGATGACTTTCGATCTAAGTTT 59.936 37.037 10.33 3.07 36.04 2.66
62 63 9.574458 CAGAAGATGACTTTCGATCTAAGTTTA 57.426 33.333 10.33 5.32 36.04 2.01
63 64 9.796120 AGAAGATGACTTTCGATCTAAGTTTAG 57.204 33.333 10.33 0.00 36.04 1.85
64 65 9.575783 GAAGATGACTTTCGATCTAAGTTTAGT 57.424 33.333 10.33 0.00 36.04 2.24
65 66 9.930693 AAGATGACTTTCGATCTAAGTTTAGTT 57.069 29.630 10.33 2.84 36.04 2.24
66 67 9.930693 AGATGACTTTCGATCTAAGTTTAGTTT 57.069 29.630 10.33 0.00 36.04 2.66
71 72 8.919661 ACTTTCGATCTAAGTTTAGTTTTACCG 58.080 33.333 4.72 0.00 32.06 4.02
72 73 9.132521 CTTTCGATCTAAGTTTAGTTTTACCGA 57.867 33.333 0.00 0.00 32.61 4.69
73 74 9.474920 TTTCGATCTAAGTTTAGTTTTACCGAA 57.525 29.630 0.00 0.00 32.61 4.30
74 75 8.679288 TCGATCTAAGTTTAGTTTTACCGAAG 57.321 34.615 0.00 0.00 32.61 3.79
75 76 8.514594 TCGATCTAAGTTTAGTTTTACCGAAGA 58.485 33.333 0.00 0.00 32.61 2.87
76 77 9.298774 CGATCTAAGTTTAGTTTTACCGAAGAT 57.701 33.333 0.00 0.00 32.61 2.40
88 89 9.280174 AGTTTTACCGAAGATCTTAATTGTTCA 57.720 29.630 8.25 0.00 0.00 3.18
91 92 9.667107 TTTACCGAAGATCTTAATTGTTCATCT 57.333 29.630 8.25 0.00 0.00 2.90
130 131 7.451281 ACTCTTACACGAATATTCACAATCG 57.549 36.000 15.57 3.60 40.90 3.34
162 164 2.423892 CGTAGCTCTGAGTATGGTGTGT 59.576 50.000 6.53 0.00 0.00 3.72
165 167 5.392703 CGTAGCTCTGAGTATGGTGTGTTTA 60.393 44.000 6.53 0.00 0.00 2.01
166 168 5.483685 AGCTCTGAGTATGGTGTGTTTAA 57.516 39.130 6.53 0.00 0.00 1.52
168 170 6.476378 AGCTCTGAGTATGGTGTGTTTAATT 58.524 36.000 6.53 0.00 0.00 1.40
219 222 8.807667 ACTTCTTACAAGAAAAATGAGCATTG 57.192 30.769 5.93 0.00 43.84 2.82
223 226 3.071312 ACAAGAAAAATGAGCATTGGCCA 59.929 39.130 0.00 0.00 42.56 5.36
236 239 3.934579 GCATTGGCCAGTAGAAAAATTGG 59.065 43.478 5.11 0.00 0.00 3.16
245 248 6.044682 CCAGTAGAAAAATTGGCCATGATTC 58.955 40.000 6.09 9.56 0.00 2.52
246 249 6.351202 CCAGTAGAAAAATTGGCCATGATTCA 60.351 38.462 6.09 0.00 0.00 2.57
247 250 7.098477 CAGTAGAAAAATTGGCCATGATTCAA 58.902 34.615 6.09 0.00 0.00 2.69
248 251 7.063780 CAGTAGAAAAATTGGCCATGATTCAAC 59.936 37.037 6.09 0.00 0.00 3.18
249 252 5.867330 AGAAAAATTGGCCATGATTCAACA 58.133 33.333 6.09 0.00 0.00 3.33
250 253 6.297582 AGAAAAATTGGCCATGATTCAACAA 58.702 32.000 6.09 0.00 0.00 2.83
251 254 6.771749 AGAAAAATTGGCCATGATTCAACAAA 59.228 30.769 6.09 0.00 0.00 2.83
252 255 6.956202 AAAATTGGCCATGATTCAACAAAA 57.044 29.167 6.09 0.00 0.00 2.44
253 256 6.956202 AAATTGGCCATGATTCAACAAAAA 57.044 29.167 6.09 0.00 0.00 1.94
254 257 5.945466 ATTGGCCATGATTCAACAAAAAC 57.055 34.783 6.09 0.00 0.00 2.43
255 258 4.412796 TGGCCATGATTCAACAAAAACA 57.587 36.364 0.00 0.00 0.00 2.83
256 259 4.774124 TGGCCATGATTCAACAAAAACAA 58.226 34.783 0.00 0.00 0.00 2.83
257 260 4.574013 TGGCCATGATTCAACAAAAACAAC 59.426 37.500 0.00 0.00 0.00 3.32
258 261 4.815846 GGCCATGATTCAACAAAAACAACT 59.184 37.500 0.00 0.00 0.00 3.16
259 262 5.296531 GGCCATGATTCAACAAAAACAACTT 59.703 36.000 0.00 0.00 0.00 2.66
260 263 6.183360 GGCCATGATTCAACAAAAACAACTTT 60.183 34.615 0.00 0.00 0.00 2.66
261 264 7.249858 GCCATGATTCAACAAAAACAACTTTT 58.750 30.769 0.00 0.00 37.75 2.27
262 265 7.754475 GCCATGATTCAACAAAAACAACTTTTT 59.246 29.630 0.00 0.00 39.70 1.94
305 308 2.037901 TGAGCATTGGCCTGTTGAAAA 58.962 42.857 3.32 0.00 42.56 2.29
306 309 2.433604 TGAGCATTGGCCTGTTGAAAAA 59.566 40.909 3.32 0.00 42.56 1.94
307 310 3.071312 TGAGCATTGGCCTGTTGAAAAAT 59.929 39.130 3.32 0.00 42.56 1.82
308 311 4.067192 GAGCATTGGCCTGTTGAAAAATT 58.933 39.130 3.32 0.00 42.56 1.82
309 312 4.463070 AGCATTGGCCTGTTGAAAAATTT 58.537 34.783 3.32 0.00 42.56 1.82
310 313 4.276431 AGCATTGGCCTGTTGAAAAATTTG 59.724 37.500 3.32 0.00 42.56 2.32
311 314 4.557097 GCATTGGCCTGTTGAAAAATTTGG 60.557 41.667 3.32 0.00 0.00 3.28
312 315 2.570135 TGGCCTGTTGAAAAATTTGGC 58.430 42.857 3.32 5.16 38.28 4.52
314 317 2.570135 GCCTGTTGAAAAATTTGGCCA 58.430 42.857 0.00 0.00 33.45 5.36
315 318 3.148412 GCCTGTTGAAAAATTTGGCCAT 58.852 40.909 6.09 0.00 33.45 4.40
316 319 3.058085 GCCTGTTGAAAAATTTGGCCATG 60.058 43.478 6.09 0.00 33.45 3.66
317 320 4.387598 CCTGTTGAAAAATTTGGCCATGA 58.612 39.130 6.09 0.00 0.00 3.07
318 321 5.005094 CCTGTTGAAAAATTTGGCCATGAT 58.995 37.500 6.09 0.23 0.00 2.45
319 322 5.474189 CCTGTTGAAAAATTTGGCCATGATT 59.526 36.000 6.09 7.73 0.00 2.57
320 323 6.348704 CCTGTTGAAAAATTTGGCCATGATTC 60.349 38.462 6.09 8.22 0.00 2.52
321 324 6.060136 TGTTGAAAAATTTGGCCATGATTCA 58.940 32.000 6.09 10.83 0.00 2.57
322 325 6.544931 TGTTGAAAAATTTGGCCATGATTCAA 59.455 30.769 19.93 19.93 34.30 2.69
323 326 6.804770 TGAAAAATTTGGCCATGATTCAAG 57.195 33.333 6.09 0.00 0.00 3.02
324 327 5.181622 TGAAAAATTTGGCCATGATTCAAGC 59.818 36.000 6.09 3.99 0.00 4.01
325 328 3.985019 AATTTGGCCATGATTCAAGCA 57.015 38.095 6.09 0.00 0.00 3.91
326 329 3.985019 ATTTGGCCATGATTCAAGCAA 57.015 38.095 6.09 0.00 0.00 3.91
327 330 3.766068 TTTGGCCATGATTCAAGCAAA 57.234 38.095 6.09 6.18 0.00 3.68
328 331 3.766068 TTGGCCATGATTCAAGCAAAA 57.234 38.095 6.09 5.34 0.00 2.44
329 332 3.766068 TGGCCATGATTCAAGCAAAAA 57.234 38.095 0.00 0.00 0.00 1.94
330 333 3.401182 TGGCCATGATTCAAGCAAAAAC 58.599 40.909 0.00 0.00 0.00 2.43
331 334 3.181457 TGGCCATGATTCAAGCAAAAACA 60.181 39.130 0.00 0.96 0.00 2.83
332 335 3.814283 GGCCATGATTCAAGCAAAAACAA 59.186 39.130 0.00 0.00 0.00 2.83
333 336 4.456566 GGCCATGATTCAAGCAAAAACAAT 59.543 37.500 0.00 0.00 0.00 2.71
334 337 5.642919 GGCCATGATTCAAGCAAAAACAATA 59.357 36.000 0.00 0.00 0.00 1.90
335 338 6.316890 GGCCATGATTCAAGCAAAAACAATAT 59.683 34.615 0.00 0.00 0.00 1.28
336 339 7.148205 GGCCATGATTCAAGCAAAAACAATATT 60.148 33.333 0.00 0.00 0.00 1.28
337 340 8.238631 GCCATGATTCAAGCAAAAACAATATTT 58.761 29.630 0.00 0.00 0.00 1.40
381 384 2.825861 AAAAGAGCATTGGCCTGTTG 57.174 45.000 3.32 0.00 42.56 3.33
382 385 1.999648 AAAGAGCATTGGCCTGTTGA 58.000 45.000 3.32 0.00 42.56 3.18
383 386 1.999648 AAGAGCATTGGCCTGTTGAA 58.000 45.000 3.32 0.00 42.56 2.69
384 387 1.999648 AGAGCATTGGCCTGTTGAAA 58.000 45.000 3.32 0.00 42.56 2.69
402 405 8.097078 TGTTGAAAAATTGGCCATGATTAAAG 57.903 30.769 6.09 0.00 0.00 1.85
484 488 4.890581 TCCAAAACTAGCCTAAAAACAGCA 59.109 37.500 0.00 0.00 0.00 4.41
534 538 0.165944 GTACACACACGCCATCTTGC 59.834 55.000 0.00 0.00 0.00 4.01
535 539 0.034756 TACACACACGCCATCTTGCT 59.965 50.000 0.00 0.00 0.00 3.91
536 540 0.819259 ACACACACGCCATCTTGCTT 60.819 50.000 0.00 0.00 0.00 3.91
537 541 0.386352 CACACACGCCATCTTGCTTG 60.386 55.000 0.00 0.00 36.64 4.01
558 563 1.597302 CCAGCTGAGCCGATCCATG 60.597 63.158 17.39 0.00 0.00 3.66
559 564 2.110627 AGCTGAGCCGATCCATGC 59.889 61.111 0.00 0.00 0.00 4.06
560 565 3.344215 GCTGAGCCGATCCATGCG 61.344 66.667 0.00 0.00 0.00 4.73
561 566 2.418777 CTGAGCCGATCCATGCGA 59.581 61.111 0.00 0.00 0.00 5.10
562 567 1.953138 CTGAGCCGATCCATGCGAC 60.953 63.158 0.00 0.00 0.00 5.19
563 568 2.663188 GAGCCGATCCATGCGACC 60.663 66.667 0.00 0.00 0.00 4.79
564 569 3.445518 GAGCCGATCCATGCGACCA 62.446 63.158 0.00 0.00 0.00 4.02
565 570 2.281070 GCCGATCCATGCGACCAT 60.281 61.111 0.00 0.00 0.00 3.55
566 571 1.005037 GCCGATCCATGCGACCATA 60.005 57.895 0.00 0.00 0.00 2.74
567 572 1.291877 GCCGATCCATGCGACCATAC 61.292 60.000 0.00 0.00 0.00 2.39
568 573 0.670546 CCGATCCATGCGACCATACC 60.671 60.000 0.00 0.00 0.00 2.73
569 574 0.670546 CGATCCATGCGACCATACCC 60.671 60.000 0.00 0.00 0.00 3.69
570 575 0.670546 GATCCATGCGACCATACCCG 60.671 60.000 0.00 0.00 0.00 5.28
571 576 1.118965 ATCCATGCGACCATACCCGA 61.119 55.000 0.00 0.00 0.00 5.14
572 577 1.300931 CCATGCGACCATACCCGAG 60.301 63.158 0.00 0.00 0.00 4.63
573 578 1.300931 CATGCGACCATACCCGAGG 60.301 63.158 0.00 0.00 0.00 4.63
701 707 2.095919 CCTTTCCACGTAAAAAGCCTCG 60.096 50.000 13.63 0.00 32.34 4.63
705 711 0.589223 CACGTAAAAAGCCTCGGCAA 59.411 50.000 11.02 0.00 44.88 4.52
786 806 4.773117 GTCCCGTCTCGTCGCCAC 62.773 72.222 0.00 0.00 0.00 5.01
805 825 4.060667 CACCAAATCCCCCGCCCT 62.061 66.667 0.00 0.00 0.00 5.19
909 929 3.374402 CACACGACTCGCCCTCCT 61.374 66.667 0.00 0.00 0.00 3.69
911 931 3.827898 CACGACTCGCCCTCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
937 957 3.782443 CAGCCCCACCTACCGACC 61.782 72.222 0.00 0.00 0.00 4.79
938 958 4.007323 AGCCCCACCTACCGACCT 62.007 66.667 0.00 0.00 0.00 3.85
939 959 2.042639 GCCCCACCTACCGACCTA 60.043 66.667 0.00 0.00 0.00 3.08
940 960 2.429767 GCCCCACCTACCGACCTAC 61.430 68.421 0.00 0.00 0.00 3.18
942 962 2.123428 CCCACCTACCGACCTACCG 61.123 68.421 0.00 0.00 0.00 4.02
943 963 2.779033 CCACCTACCGACCTACCGC 61.779 68.421 0.00 0.00 0.00 5.68
944 964 2.440980 ACCTACCGACCTACCGCC 60.441 66.667 0.00 0.00 0.00 6.13
947 967 4.059304 TACCGACCTACCGCCCCA 62.059 66.667 0.00 0.00 0.00 4.96
1467 1813 2.100631 CATCCGTGACACCTTCCGC 61.101 63.158 0.00 0.00 0.00 5.54
1473 1819 3.112709 GACACCTTCCGCGTGCTC 61.113 66.667 4.92 0.00 34.45 4.26
1529 1875 2.180017 CCCCGTCGTCAAGGTACG 59.820 66.667 0.00 0.00 44.19 3.67
1617 1965 0.319727 CTGATCCGATCTGCTGCTCC 60.320 60.000 9.78 0.00 0.00 4.70
1618 1966 0.758310 TGATCCGATCTGCTGCTCCT 60.758 55.000 9.78 0.00 0.00 3.69
1628 1976 2.620115 TCTGCTGCTCCTTGTTTTTCTG 59.380 45.455 0.00 0.00 0.00 3.02
1922 2270 1.611851 AGCAGGGAGACAGGTGAGG 60.612 63.158 0.00 0.00 0.00 3.86
1945 2293 6.813152 AGGAAAATTATGCCTTTTGTCATTCG 59.187 34.615 0.00 0.00 0.00 3.34
1948 2296 8.600449 AAAATTATGCCTTTTGTCATTCGAAA 57.400 26.923 0.00 0.00 0.00 3.46
1994 2344 1.292223 GGCACTCGCTGTCCTGTTA 59.708 57.895 0.00 0.00 38.60 2.41
2007 2358 5.448632 GCTGTCCTGTTAAAAATATCGGTGG 60.449 44.000 0.00 0.00 0.00 4.61
2008 2359 4.944930 TGTCCTGTTAAAAATATCGGTGGG 59.055 41.667 0.00 0.00 0.00 4.61
2275 2626 4.330250 AGTTCTGGGTTCATCAATCAGTG 58.670 43.478 0.00 0.00 0.00 3.66
2511 2869 6.130569 ACACCAGTAACCTTTGTTGGAATTA 58.869 36.000 0.00 0.00 35.87 1.40
2548 2906 4.910456 GCCGTGTCGAGTTAATATAGTCAG 59.090 45.833 0.00 0.00 0.00 3.51
2572 2930 3.402628 TTTCTTCAGGTGTGTCTAGGC 57.597 47.619 0.00 0.00 0.00 3.93
2692 3050 7.148272 GGCATAATAAAAATGGCATGTTGTTGT 60.148 33.333 3.09 1.00 46.21 3.32
2788 3148 7.158697 TGCTTATCTTACTGTAGTTTGCAGAA 58.841 34.615 1.16 0.00 37.40 3.02
2789 3149 7.824289 TGCTTATCTTACTGTAGTTTGCAGAAT 59.176 33.333 1.16 0.00 37.40 2.40
2875 3235 0.458669 ATAGGTACCGTGAGTTGGCG 59.541 55.000 6.18 0.00 0.00 5.69
3070 3430 2.203153 GTGTGGGTTGGTGAGCGT 60.203 61.111 0.00 0.00 0.00 5.07
3103 3463 1.818674 GACGGGGCTCATGTTGAATTT 59.181 47.619 0.00 0.00 0.00 1.82
3140 3500 1.992557 ACCCTCTTGGCATTAAGGTCA 59.007 47.619 0.00 0.00 37.83 4.02
3325 3685 1.227973 GCCGGGAAGGATCACCATC 60.228 63.158 2.18 0.00 45.00 3.51
3494 3854 7.225538 GTCCATTTGACTCTATTATGGTGAGTG 59.774 40.741 0.00 0.00 40.63 3.51
3506 3866 7.726033 ATTATGGTGAGTGTCTTTCTACTCT 57.274 36.000 0.00 0.00 42.86 3.24
3547 3908 8.869109 TCCTAAAATTGTGGATGAAACTGAAAT 58.131 29.630 0.00 0.00 0.00 2.17
3566 3927 8.262227 ACTGAAATTCATGACATGGCAAAATAT 58.738 29.630 4.70 0.00 0.00 1.28
3800 4182 7.575414 TGGTTGCAACAAAGAGTTTCTATTA 57.425 32.000 29.55 0.00 38.74 0.98
3906 4288 0.391661 AGGTGCGTGCATTCTTCGAT 60.392 50.000 0.00 0.00 0.00 3.59
3996 4378 1.227263 CATCGGTGGATCACGGACC 60.227 63.158 9.81 0.00 44.11 4.46
4059 4441 2.664851 CCAAGGCTGAACGCGTCA 60.665 61.111 14.44 11.76 40.44 4.35
4756 5145 8.819152 TTTTTGAAATTTGAAATTTGAGACGC 57.181 26.923 19.47 5.74 0.00 5.19
4803 5235 5.197682 AGTTATTTTCGGTAGATCCCTCG 57.802 43.478 0.00 0.00 0.00 4.63
4826 5258 2.032620 AGGGTGTATTGGCTAGACGAG 58.967 52.381 0.00 0.00 0.00 4.18
4839 5271 5.773176 TGGCTAGACGAGTATATCAAATGGA 59.227 40.000 0.00 0.00 0.00 3.41
4870 5302 6.731467 ACAAGGATTACCCATGTTTATGTCT 58.269 36.000 0.00 0.00 34.49 3.41
4903 5337 6.140968 AGGTAAAACCCTATTTCTTGCTCT 57.859 37.500 0.00 0.00 39.75 4.09
4910 5344 8.738645 AAACCCTATTTCTTGCTCTTGTATAG 57.261 34.615 0.00 0.00 0.00 1.31
4911 5345 7.676683 ACCCTATTTCTTGCTCTTGTATAGA 57.323 36.000 0.00 0.00 0.00 1.98
4943 5390 3.260380 AGATCGAGGGATTGAGCAATAGG 59.740 47.826 0.00 0.00 31.51 2.57
4945 5392 2.365617 TCGAGGGATTGAGCAATAGGTC 59.634 50.000 0.00 0.00 42.53 3.85
4965 5412 5.533154 AGGTCTGAGGTTCTGTATCTAATCG 59.467 44.000 0.00 0.00 0.00 3.34
4967 5414 6.039493 GGTCTGAGGTTCTGTATCTAATCGAA 59.961 42.308 0.00 0.00 0.00 3.71
4983 5430 7.149973 TCTAATCGAATATTCTAACCCCAACG 58.850 38.462 13.45 0.00 0.00 4.10
5010 5457 2.523245 GGTACCGGGATCTAGGGTTAG 58.477 57.143 6.32 0.00 35.28 2.34
5016 5463 6.413129 ACCGGGATCTAGGGTTAGATAATA 57.587 41.667 6.32 0.00 44.72 0.98
5022 5469 9.994017 GGGATCTAGGGTTAGATAATACTAGTT 57.006 37.037 0.00 0.00 44.72 2.24
5030 5477 8.488668 GGGTTAGATAATACTAGTTGGTTGGAA 58.511 37.037 0.00 0.00 0.00 3.53
5031 5478 9.543783 GGTTAGATAATACTAGTTGGTTGGAAG 57.456 37.037 0.00 0.00 0.00 3.46
5032 5479 9.543783 GTTAGATAATACTAGTTGGTTGGAAGG 57.456 37.037 0.00 0.00 0.00 3.46
5033 5480 7.750947 AGATAATACTAGTTGGTTGGAAGGT 57.249 36.000 0.00 0.00 0.00 3.50
5034 5481 8.849543 AGATAATACTAGTTGGTTGGAAGGTA 57.150 34.615 0.00 0.00 0.00 3.08
5035 5482 9.448587 AGATAATACTAGTTGGTTGGAAGGTAT 57.551 33.333 0.00 0.00 0.00 2.73
5039 5486 6.248569 ACTAGTTGGTTGGAAGGTATATGG 57.751 41.667 0.00 0.00 0.00 2.74
5040 5487 4.519906 AGTTGGTTGGAAGGTATATGGG 57.480 45.455 0.00 0.00 0.00 4.00
5041 5488 3.856206 AGTTGGTTGGAAGGTATATGGGT 59.144 43.478 0.00 0.00 0.00 4.51
5042 5489 5.041015 AGTTGGTTGGAAGGTATATGGGTA 58.959 41.667 0.00 0.00 0.00 3.69
5043 5490 5.104235 AGTTGGTTGGAAGGTATATGGGTAC 60.104 44.000 0.00 0.00 0.00 3.34
5060 5507 3.377573 GGTACCAGGATGTAGGGTTACA 58.622 50.000 7.15 0.00 43.55 2.41
5072 5519 3.637184 GGTTACATCACCCCAACGT 57.363 52.632 0.00 0.00 0.00 3.99
5073 5520 2.766345 GGTTACATCACCCCAACGTA 57.234 50.000 0.00 0.00 0.00 3.57
5074 5521 2.624636 GGTTACATCACCCCAACGTAG 58.375 52.381 0.00 0.00 0.00 3.51
5075 5522 2.624636 GTTACATCACCCCAACGTAGG 58.375 52.381 0.00 0.00 0.00 3.18
5076 5523 1.941377 TACATCACCCCAACGTAGGT 58.059 50.000 4.03 1.69 36.58 3.08
5077 5524 0.611714 ACATCACCCCAACGTAGGTC 59.388 55.000 2.04 0.00 32.72 3.85
5078 5525 0.459585 CATCACCCCAACGTAGGTCG 60.460 60.000 2.04 0.30 46.00 4.79
5079 5526 1.610554 ATCACCCCAACGTAGGTCGG 61.611 60.000 2.04 0.00 44.69 4.79
5080 5527 2.203684 ACCCCAACGTAGGTCGGT 60.204 61.111 4.03 0.00 44.69 4.69
5081 5528 2.278330 ACCCCAACGTAGGTCGGTC 61.278 63.158 4.03 0.00 44.69 4.79
5082 5529 2.575461 CCCAACGTAGGTCGGTCC 59.425 66.667 0.00 0.00 44.69 4.46
5095 5542 4.021925 GGTCCTGCCGCTGGTCTT 62.022 66.667 15.28 0.00 0.00 3.01
5096 5543 2.435059 GTCCTGCCGCTGGTCTTC 60.435 66.667 15.28 2.92 0.00 2.87
5097 5544 2.604686 TCCTGCCGCTGGTCTTCT 60.605 61.111 15.28 0.00 0.00 2.85
5098 5545 2.217038 TCCTGCCGCTGGTCTTCTT 61.217 57.895 15.28 0.00 0.00 2.52
5099 5546 1.743252 CCTGCCGCTGGTCTTCTTC 60.743 63.158 8.11 0.00 0.00 2.87
5100 5547 1.743252 CTGCCGCTGGTCTTCTTCC 60.743 63.158 0.00 0.00 0.00 3.46
5101 5548 2.177594 CTGCCGCTGGTCTTCTTCCT 62.178 60.000 0.00 0.00 0.00 3.36
5102 5549 1.003233 GCCGCTGGTCTTCTTCCTT 60.003 57.895 0.00 0.00 0.00 3.36
5103 5550 1.301677 GCCGCTGGTCTTCTTCCTTG 61.302 60.000 0.00 0.00 0.00 3.61
5104 5551 0.674895 CCGCTGGTCTTCTTCCTTGG 60.675 60.000 0.00 0.00 0.00 3.61
5105 5552 0.321671 CGCTGGTCTTCTTCCTTGGA 59.678 55.000 0.00 0.00 0.00 3.53
5106 5553 1.674221 CGCTGGTCTTCTTCCTTGGAG 60.674 57.143 0.00 0.00 0.00 3.86
5107 5554 1.625818 GCTGGTCTTCTTCCTTGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
5108 5555 2.238395 GCTGGTCTTCTTCCTTGGAGAT 59.762 50.000 0.00 0.00 0.00 2.75
5109 5556 3.871485 CTGGTCTTCTTCCTTGGAGATG 58.129 50.000 0.00 0.00 0.00 2.90
5110 5557 3.517100 CTGGTCTTCTTCCTTGGAGATGA 59.483 47.826 0.00 0.00 0.00 2.92
5111 5558 4.107072 TGGTCTTCTTCCTTGGAGATGAT 58.893 43.478 0.00 0.00 32.24 2.45
5112 5559 4.537688 TGGTCTTCTTCCTTGGAGATGATT 59.462 41.667 0.00 0.00 32.24 2.57
5113 5560 5.014544 TGGTCTTCTTCCTTGGAGATGATTT 59.985 40.000 0.00 0.00 32.24 2.17
5114 5561 5.588246 GGTCTTCTTCCTTGGAGATGATTTC 59.412 44.000 0.00 0.00 32.24 2.17
5115 5562 5.588246 GTCTTCTTCCTTGGAGATGATTTCC 59.412 44.000 0.00 0.00 32.24 3.13
5116 5563 5.490357 TCTTCTTCCTTGGAGATGATTTCCT 59.510 40.000 3.51 0.00 35.67 3.36
5117 5564 5.786121 TCTTCCTTGGAGATGATTTCCTT 57.214 39.130 3.51 0.00 35.67 3.36
5118 5565 5.503927 TCTTCCTTGGAGATGATTTCCTTG 58.496 41.667 3.51 0.00 35.67 3.61
5119 5566 4.240881 TCCTTGGAGATGATTTCCTTGG 57.759 45.455 3.51 5.71 35.67 3.61
5120 5567 3.593328 TCCTTGGAGATGATTTCCTTGGT 59.407 43.478 3.51 0.00 35.67 3.67
5121 5568 3.698040 CCTTGGAGATGATTTCCTTGGTG 59.302 47.826 3.51 0.00 35.67 4.17
5122 5569 2.726821 TGGAGATGATTTCCTTGGTGC 58.273 47.619 3.51 0.00 35.67 5.01
5123 5570 2.041485 TGGAGATGATTTCCTTGGTGCA 59.959 45.455 3.51 0.00 35.67 4.57
5124 5571 3.091545 GGAGATGATTTCCTTGGTGCAA 58.908 45.455 0.00 0.00 0.00 4.08
5125 5572 3.703052 GGAGATGATTTCCTTGGTGCAAT 59.297 43.478 0.00 0.00 0.00 3.56
5126 5573 4.202090 GGAGATGATTTCCTTGGTGCAATC 60.202 45.833 0.00 0.00 0.00 2.67
5127 5574 4.346730 AGATGATTTCCTTGGTGCAATCA 58.653 39.130 0.00 11.24 39.39 2.57
5128 5575 3.940209 TGATTTCCTTGGTGCAATCAC 57.060 42.857 0.00 0.00 42.40 3.06
5129 5576 3.229293 TGATTTCCTTGGTGCAATCACA 58.771 40.909 0.00 0.00 44.87 3.58
5130 5577 3.640498 TGATTTCCTTGGTGCAATCACAA 59.360 39.130 0.00 0.00 44.87 3.33
5131 5578 4.100653 TGATTTCCTTGGTGCAATCACAAA 59.899 37.500 0.00 0.00 44.87 2.83
5132 5579 3.451141 TTCCTTGGTGCAATCACAAAC 57.549 42.857 0.00 0.00 44.87 2.93
5133 5580 2.665165 TCCTTGGTGCAATCACAAACT 58.335 42.857 0.00 0.00 44.87 2.66
5134 5581 2.622942 TCCTTGGTGCAATCACAAACTC 59.377 45.455 0.00 0.00 44.87 3.01
5135 5582 2.288395 CCTTGGTGCAATCACAAACTCC 60.288 50.000 0.00 0.00 44.87 3.85
5136 5583 2.064434 TGGTGCAATCACAAACTCCA 57.936 45.000 0.00 0.00 44.87 3.86
5137 5584 1.680735 TGGTGCAATCACAAACTCCAC 59.319 47.619 0.00 0.00 44.87 4.02
5138 5585 1.680735 GGTGCAATCACAAACTCCACA 59.319 47.619 0.00 0.00 44.87 4.17
5139 5586 2.543653 GGTGCAATCACAAACTCCACAC 60.544 50.000 0.00 0.00 44.87 3.82
5140 5587 2.098934 GTGCAATCACAAACTCCACACA 59.901 45.455 0.00 0.00 42.66 3.72
5141 5588 2.957680 TGCAATCACAAACTCCACACAT 59.042 40.909 0.00 0.00 0.00 3.21
5142 5589 4.023279 GTGCAATCACAAACTCCACACATA 60.023 41.667 0.00 0.00 42.66 2.29
5143 5590 4.582240 TGCAATCACAAACTCCACACATAA 59.418 37.500 0.00 0.00 0.00 1.90
5144 5591 5.068329 TGCAATCACAAACTCCACACATAAA 59.932 36.000 0.00 0.00 0.00 1.40
5145 5592 5.982516 GCAATCACAAACTCCACACATAAAA 59.017 36.000 0.00 0.00 0.00 1.52
5146 5593 6.478344 GCAATCACAAACTCCACACATAAAAA 59.522 34.615 0.00 0.00 0.00 1.94
5147 5594 7.171337 GCAATCACAAACTCCACACATAAAAAT 59.829 33.333 0.00 0.00 0.00 1.82
5148 5595 9.689976 CAATCACAAACTCCACACATAAAAATA 57.310 29.630 0.00 0.00 0.00 1.40
5149 5596 9.691362 AATCACAAACTCCACACATAAAAATAC 57.309 29.630 0.00 0.00 0.00 1.89
5150 5597 7.356540 TCACAAACTCCACACATAAAAATACG 58.643 34.615 0.00 0.00 0.00 3.06
5151 5598 6.580791 CACAAACTCCACACATAAAAATACGG 59.419 38.462 0.00 0.00 0.00 4.02
5152 5599 6.487331 ACAAACTCCACACATAAAAATACGGA 59.513 34.615 0.00 0.00 0.00 4.69
5153 5600 7.175990 ACAAACTCCACACATAAAAATACGGAT 59.824 33.333 0.00 0.00 0.00 4.18
5154 5601 7.696992 AACTCCACACATAAAAATACGGATT 57.303 32.000 0.00 0.00 0.00 3.01
5155 5602 8.795842 AACTCCACACATAAAAATACGGATTA 57.204 30.769 0.00 0.00 0.00 1.75
5156 5603 8.974060 ACTCCACACATAAAAATACGGATTAT 57.026 30.769 0.00 0.00 0.00 1.28
5157 5604 9.403583 ACTCCACACATAAAAATACGGATTATT 57.596 29.630 0.00 0.00 31.07 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.519540 TGAGCTAAAAGAATTTGTGGCC 57.480 40.909 0.00 0.00 39.02 5.36
1 2 6.646240 TCAAATGAGCTAAAAGAATTTGTGGC 59.354 34.615 0.00 0.00 39.02 5.01
2 3 7.869429 ACTCAAATGAGCTAAAAGAATTTGTGG 59.131 33.333 10.28 6.87 45.79 4.17
5 6 8.633408 CGAACTCAAATGAGCTAAAAGAATTTG 58.367 33.333 10.28 0.00 45.79 2.32
6 7 7.809806 CCGAACTCAAATGAGCTAAAAGAATTT 59.190 33.333 10.28 0.00 45.79 1.82
7 8 7.308435 CCGAACTCAAATGAGCTAAAAGAATT 58.692 34.615 10.28 0.00 45.79 2.17
8 9 6.127897 CCCGAACTCAAATGAGCTAAAAGAAT 60.128 38.462 10.28 0.00 45.79 2.40
9 10 5.181245 CCCGAACTCAAATGAGCTAAAAGAA 59.819 40.000 10.28 0.00 45.79 2.52
10 11 4.695455 CCCGAACTCAAATGAGCTAAAAGA 59.305 41.667 10.28 0.00 45.79 2.52
11 12 4.695455 TCCCGAACTCAAATGAGCTAAAAG 59.305 41.667 10.28 0.00 45.79 2.27
12 13 4.647611 TCCCGAACTCAAATGAGCTAAAA 58.352 39.130 10.28 0.00 45.79 1.52
13 14 4.253685 CTCCCGAACTCAAATGAGCTAAA 58.746 43.478 10.28 0.00 45.79 1.85
14 15 3.861840 CTCCCGAACTCAAATGAGCTAA 58.138 45.455 10.28 0.00 45.79 3.09
15 16 2.418746 GCTCCCGAACTCAAATGAGCTA 60.419 50.000 10.28 0.00 45.79 3.32
16 17 1.677217 GCTCCCGAACTCAAATGAGCT 60.677 52.381 10.28 0.00 45.79 4.09
17 18 0.729690 GCTCCCGAACTCAAATGAGC 59.270 55.000 10.28 0.00 45.79 4.26
19 20 1.623311 TCTGCTCCCGAACTCAAATGA 59.377 47.619 0.00 0.00 0.00 2.57
20 21 2.099141 TCTGCTCCCGAACTCAAATG 57.901 50.000 0.00 0.00 0.00 2.32
21 22 2.303022 TCTTCTGCTCCCGAACTCAAAT 59.697 45.455 0.00 0.00 0.00 2.32
22 23 1.691976 TCTTCTGCTCCCGAACTCAAA 59.308 47.619 0.00 0.00 0.00 2.69
23 24 1.338107 TCTTCTGCTCCCGAACTCAA 58.662 50.000 0.00 0.00 0.00 3.02
24 25 1.205655 CATCTTCTGCTCCCGAACTCA 59.794 52.381 0.00 0.00 0.00 3.41
25 26 1.478510 TCATCTTCTGCTCCCGAACTC 59.521 52.381 0.00 0.00 0.00 3.01
26 27 1.205893 GTCATCTTCTGCTCCCGAACT 59.794 52.381 0.00 0.00 0.00 3.01
27 28 1.205893 AGTCATCTTCTGCTCCCGAAC 59.794 52.381 0.00 0.00 0.00 3.95
28 29 1.561643 AGTCATCTTCTGCTCCCGAA 58.438 50.000 0.00 0.00 0.00 4.30
29 30 1.561643 AAGTCATCTTCTGCTCCCGA 58.438 50.000 0.00 0.00 0.00 5.14
30 31 2.275318 GAAAGTCATCTTCTGCTCCCG 58.725 52.381 0.00 0.00 32.90 5.14
31 32 2.093973 TCGAAAGTCATCTTCTGCTCCC 60.094 50.000 0.00 0.00 32.90 4.30
32 33 3.238108 TCGAAAGTCATCTTCTGCTCC 57.762 47.619 0.00 0.00 32.90 4.70
33 34 4.681744 AGATCGAAAGTCATCTTCTGCTC 58.318 43.478 0.00 0.00 32.90 4.26
34 35 4.734398 AGATCGAAAGTCATCTTCTGCT 57.266 40.909 0.00 0.00 32.90 4.24
35 36 6.039616 ACTTAGATCGAAAGTCATCTTCTGC 58.960 40.000 9.84 0.00 31.56 4.26
36 37 8.472683 AAACTTAGATCGAAAGTCATCTTCTG 57.527 34.615 14.45 0.00 36.17 3.02
37 38 9.796120 CTAAACTTAGATCGAAAGTCATCTTCT 57.204 33.333 14.45 0.00 36.17 2.85
38 39 9.575783 ACTAAACTTAGATCGAAAGTCATCTTC 57.424 33.333 14.45 0.00 36.17 2.87
39 40 9.930693 AACTAAACTTAGATCGAAAGTCATCTT 57.069 29.630 14.45 9.22 36.17 2.40
40 41 9.930693 AAACTAAACTTAGATCGAAAGTCATCT 57.069 29.630 14.45 0.00 36.17 2.90
45 46 8.919661 CGGTAAAACTAAACTTAGATCGAAAGT 58.080 33.333 9.84 9.84 38.82 2.66
46 47 9.132521 TCGGTAAAACTAAACTTAGATCGAAAG 57.867 33.333 3.50 8.74 34.84 2.62
47 48 9.474920 TTCGGTAAAACTAAACTTAGATCGAAA 57.525 29.630 3.50 0.00 34.84 3.46
48 49 9.132521 CTTCGGTAAAACTAAACTTAGATCGAA 57.867 33.333 3.50 4.27 34.84 3.71
49 50 8.514594 TCTTCGGTAAAACTAAACTTAGATCGA 58.485 33.333 3.50 0.00 34.84 3.59
50 51 8.679288 TCTTCGGTAAAACTAAACTTAGATCG 57.321 34.615 3.50 0.00 34.84 3.69
62 63 9.280174 TGAACAATTAAGATCTTCGGTAAAACT 57.720 29.630 12.24 0.00 0.00 2.66
65 66 9.667107 AGATGAACAATTAAGATCTTCGGTAAA 57.333 29.630 12.24 0.13 0.00 2.01
94 95 8.948631 ATTCGTGTAAGAGTTATGATGTGAAT 57.051 30.769 0.00 0.00 0.00 2.57
101 102 9.863845 TTGTGAATATTCGTGTAAGAGTTATGA 57.136 29.630 10.80 0.00 0.00 2.15
111 112 3.487942 CGGCGATTGTGAATATTCGTGTA 59.512 43.478 0.00 0.00 34.24 2.90
115 116 2.410262 GCTCGGCGATTGTGAATATTCG 60.410 50.000 11.27 0.00 34.83 3.34
143 145 6.599356 TTAAACACACCATACTCAGAGCTA 57.401 37.500 0.00 0.00 0.00 3.32
145 147 6.743575 AATTAAACACACCATACTCAGAGC 57.256 37.500 0.00 0.00 0.00 4.09
177 179 8.194769 TGTAAGAAGTTGCGATATGAGTATTCA 58.805 33.333 0.00 0.00 37.81 2.57
183 185 7.525688 TTCTTGTAAGAAGTTGCGATATGAG 57.474 36.000 3.05 0.00 39.95 2.90
187 189 8.779303 TCATTTTTCTTGTAAGAAGTTGCGATA 58.221 29.630 7.09 0.00 45.01 2.92
199 201 5.221601 TGGCCAATGCTCATTTTTCTTGTAA 60.222 36.000 0.61 0.00 37.74 2.41
223 226 6.855763 TGAATCATGGCCAATTTTTCTACT 57.144 33.333 10.96 0.00 0.00 2.57
236 239 5.989551 AGTTGTTTTTGTTGAATCATGGC 57.010 34.783 0.00 0.00 0.00 4.40
253 256 9.705290 CTTGCAAGGGTTATATTAAAAAGTTGT 57.295 29.630 19.14 0.00 0.00 3.32
254 257 9.921637 TCTTGCAAGGGTTATATTAAAAAGTTG 57.078 29.630 25.73 0.00 0.00 3.16
263 266 7.765819 GCTCATTTTTCTTGCAAGGGTTATATT 59.234 33.333 25.73 1.90 0.00 1.28
264 267 7.093377 TGCTCATTTTTCTTGCAAGGGTTATAT 60.093 33.333 25.73 9.65 0.00 0.86
270 273 3.389925 TGCTCATTTTTCTTGCAAGGG 57.610 42.857 25.73 2.67 0.00 3.95
305 308 3.985019 TGCTTGAATCATGGCCAAATT 57.015 38.095 10.96 13.38 0.00 1.82
306 309 3.985019 TTGCTTGAATCATGGCCAAAT 57.015 38.095 10.96 3.31 0.00 2.32
307 310 3.766068 TTTGCTTGAATCATGGCCAAA 57.234 38.095 10.96 0.17 0.00 3.28
308 311 3.766068 TTTTGCTTGAATCATGGCCAA 57.234 38.095 10.96 0.00 0.00 4.52
309 312 3.181457 TGTTTTTGCTTGAATCATGGCCA 60.181 39.130 8.56 8.56 0.00 5.36
310 313 3.401182 TGTTTTTGCTTGAATCATGGCC 58.599 40.909 0.00 0.00 0.00 5.36
311 314 5.616488 ATTGTTTTTGCTTGAATCATGGC 57.384 34.783 0.00 0.63 0.00 4.40
361 364 2.699846 TCAACAGGCCAATGCTCTTTTT 59.300 40.909 5.01 0.00 37.74 1.94
362 365 2.318908 TCAACAGGCCAATGCTCTTTT 58.681 42.857 5.01 0.00 37.74 2.27
363 366 1.999648 TCAACAGGCCAATGCTCTTT 58.000 45.000 5.01 0.00 37.74 2.52
364 367 1.999648 TTCAACAGGCCAATGCTCTT 58.000 45.000 5.01 0.00 37.74 2.85
365 368 1.999648 TTTCAACAGGCCAATGCTCT 58.000 45.000 5.01 0.00 37.74 4.09
366 369 2.818130 TTTTCAACAGGCCAATGCTC 57.182 45.000 5.01 0.00 37.74 4.26
367 370 3.775261 ATTTTTCAACAGGCCAATGCT 57.225 38.095 5.01 0.00 37.74 3.79
368 371 3.058085 CCAATTTTTCAACAGGCCAATGC 60.058 43.478 5.01 0.00 0.00 3.56
369 372 3.058085 GCCAATTTTTCAACAGGCCAATG 60.058 43.478 5.01 0.00 36.17 2.82
370 373 3.148412 GCCAATTTTTCAACAGGCCAAT 58.852 40.909 5.01 0.00 36.17 3.16
371 374 2.570135 GCCAATTTTTCAACAGGCCAA 58.430 42.857 5.01 0.00 36.17 4.52
372 375 2.252976 GCCAATTTTTCAACAGGCCA 57.747 45.000 5.01 0.00 36.17 5.36
374 377 2.252976 TGGCCAATTTTTCAACAGGC 57.747 45.000 0.61 0.00 41.29 4.85
375 378 4.005487 TCATGGCCAATTTTTCAACAGG 57.995 40.909 10.96 0.00 0.00 4.00
376 379 7.670009 TTAATCATGGCCAATTTTTCAACAG 57.330 32.000 10.96 0.00 0.00 3.16
377 380 7.308469 GCTTTAATCATGGCCAATTTTTCAACA 60.308 33.333 10.96 0.00 0.00 3.33
378 381 7.022979 GCTTTAATCATGGCCAATTTTTCAAC 58.977 34.615 10.96 0.00 0.00 3.18
379 382 6.713903 TGCTTTAATCATGGCCAATTTTTCAA 59.286 30.769 10.96 0.00 0.00 2.69
380 383 6.236409 TGCTTTAATCATGGCCAATTTTTCA 58.764 32.000 10.96 0.19 0.00 2.69
381 384 6.740411 TGCTTTAATCATGGCCAATTTTTC 57.260 33.333 10.96 0.00 0.00 2.29
382 385 7.521871 TTTGCTTTAATCATGGCCAATTTTT 57.478 28.000 10.96 4.03 0.00 1.94
383 386 7.521871 TTTTGCTTTAATCATGGCCAATTTT 57.478 28.000 10.96 6.05 0.00 1.82
384 387 7.521871 TTTTTGCTTTAATCATGGCCAATTT 57.478 28.000 10.96 6.46 0.00 1.82
537 541 4.925861 GATCGGCTCAGCTGGGGC 62.926 72.222 29.51 29.51 35.34 5.80
558 563 2.416260 GTCCTCGGGTATGGTCGC 59.584 66.667 0.00 0.00 0.00 5.19
559 564 2.719979 CGTCCTCGGGTATGGTCG 59.280 66.667 0.00 0.00 0.00 4.79
569 574 4.125695 GGAACCGGTCCGTCCTCG 62.126 72.222 15.38 0.00 36.40 4.63
916 936 4.803908 GGTAGGTGGGGCTGCTGC 62.804 72.222 7.10 7.10 38.76 5.25
1074 1417 2.586792 CGCTTGAGGGGGAGGAAG 59.413 66.667 0.00 0.00 0.00 3.46
1161 1507 3.003763 GGGGACGAGGTCTTGGCT 61.004 66.667 0.00 0.00 32.47 4.75
1467 1813 2.503061 CCCATCTGGAGGAGCACG 59.497 66.667 0.00 0.00 37.39 5.34
1529 1875 1.339711 GTTTGTGCAATCATCGGTGC 58.660 50.000 0.00 0.00 41.29 5.01
1613 1961 2.463876 GTGTGCAGAAAAACAAGGAGC 58.536 47.619 0.00 0.00 0.00 4.70
1617 1965 2.559998 ACCGTGTGCAGAAAAACAAG 57.440 45.000 0.00 0.00 0.00 3.16
1618 1966 2.356382 CCTACCGTGTGCAGAAAAACAA 59.644 45.455 0.00 0.00 0.00 2.83
1628 1976 2.047560 GTCCCACCTACCGTGTGC 60.048 66.667 0.00 0.00 41.26 4.57
1922 2270 7.810766 TCGAATGACAAAAGGCATAATTTTC 57.189 32.000 0.00 0.00 0.00 2.29
1945 2293 8.419076 TGCACCAAAAGTTCTTCTAAAATTTC 57.581 30.769 0.00 0.00 0.00 2.17
1948 2296 5.985530 GCTGCACCAAAAGTTCTTCTAAAAT 59.014 36.000 0.00 0.00 0.00 1.82
1994 2344 6.127168 GGAAGAAATTCCCCACCGATATTTTT 60.127 38.462 0.00 0.00 35.06 1.94
2007 2358 5.946486 AGGAGATATGTGGAAGAAATTCCC 58.054 41.667 4.64 0.00 40.39 3.97
2008 2359 9.225436 GATAAGGAGATATGTGGAAGAAATTCC 57.775 37.037 0.00 0.00 41.48 3.01
2275 2626 0.531200 CTCGTCCACTCCTACCAACC 59.469 60.000 0.00 0.00 0.00 3.77
2511 2869 6.815142 ACTCGACACGGCTTAGTAAAAATAAT 59.185 34.615 0.00 0.00 0.00 1.28
2548 2906 4.511826 CCTAGACACACCTGAAGAAAACAC 59.488 45.833 0.00 0.00 0.00 3.32
2875 3235 2.109181 GCCTCGTCCACCCTATGC 59.891 66.667 0.00 0.00 0.00 3.14
3183 3543 3.512033 TCCAAAACACACCGAAAAAGG 57.488 42.857 0.00 0.00 37.30 3.11
3325 3685 3.135348 TCTCAGCTCCCATCCTTGTAATG 59.865 47.826 0.00 0.00 0.00 1.90
3340 3700 1.649321 TCACCCTCATGTTCTCAGCT 58.351 50.000 0.00 0.00 0.00 4.24
3418 3778 1.602323 GTTTCCGTGCATGGGGTCA 60.602 57.895 24.78 2.16 0.00 4.02
3494 3854 6.127591 TGCAGTAGAATCCAGAGTAGAAAGAC 60.128 42.308 0.00 0.00 0.00 3.01
3506 3866 7.615365 ACAATTTTAGGAATGCAGTAGAATCCA 59.385 33.333 0.00 0.00 32.47 3.41
3547 3908 6.590677 CACAACATATTTTGCCATGTCATGAA 59.409 34.615 14.67 0.84 34.32 2.57
3566 3927 2.762887 TGTGAAAGAAATGGCCACAACA 59.237 40.909 8.16 0.74 35.16 3.33
3597 3958 5.618056 TCACTTCAATTGCTCATCAGAAC 57.382 39.130 0.00 0.00 0.00 3.01
3607 3968 7.002816 TCAACACAAATTTCACTTCAATTGC 57.997 32.000 0.00 0.00 0.00 3.56
3800 4182 9.744468 GTAAATGACTGGAAATGTTGTTTAACT 57.256 29.630 0.00 0.00 37.68 2.24
3906 4288 0.179234 TTCCTTCTTGGTCGTGCACA 59.821 50.000 18.64 0.81 37.07 4.57
3939 4321 3.441572 GTCCAGTCATTTCAAGGTGGATG 59.558 47.826 0.00 0.00 36.50 3.51
3990 4372 1.975407 ATCGAAGGTCACGGTCCGT 60.975 57.895 12.23 12.23 42.36 4.69
3996 4378 0.458543 CCAGGTCATCGAAGGTCACG 60.459 60.000 0.00 0.00 0.00 4.35
4059 4441 0.897863 AAGCGAGCTCCAGAGACTGT 60.898 55.000 8.47 0.00 0.00 3.55
4453 4839 5.491982 AGAGGACAGATTTTACATCACCAC 58.508 41.667 0.00 0.00 0.00 4.16
4621 5008 6.037062 GTGAATTTCAAAAGGTGTTCCCAAAG 59.963 38.462 0.00 0.00 34.66 2.77
4754 5143 1.598962 CCCTCAGTATGGCATGGCG 60.599 63.158 15.27 0.00 36.16 5.69
4755 5144 0.250640 CTCCCTCAGTATGGCATGGC 60.251 60.000 13.29 13.29 36.16 4.40
4756 5145 1.135094 ACTCCCTCAGTATGGCATGG 58.865 55.000 10.98 1.63 36.16 3.66
4780 5212 6.064060 TCGAGGGATCTACCGAAAATAACTA 58.936 40.000 0.00 0.00 40.11 2.24
4789 5221 2.783609 CCTATCGAGGGATCTACCGA 57.216 55.000 1.40 6.39 39.48 4.69
4803 5235 3.825014 TCGTCTAGCCAATACACCCTATC 59.175 47.826 0.00 0.00 0.00 2.08
4811 5243 9.077674 CATTTGATATACTCGTCTAGCCAATAC 57.922 37.037 0.00 0.00 0.00 1.89
4814 5246 6.266786 TCCATTTGATATACTCGTCTAGCCAA 59.733 38.462 0.00 0.00 0.00 4.52
4816 5248 6.268825 TCCATTTGATATACTCGTCTAGCC 57.731 41.667 0.00 0.00 0.00 3.93
4870 5302 1.348696 GGGTTTTACCTCCTCCGTGAA 59.651 52.381 0.00 0.00 38.64 3.18
4903 5337 8.195436 CCTCGATCTTTGTAAACCTCTATACAA 58.805 37.037 0.00 0.00 39.54 2.41
4910 5344 4.467198 TCCCTCGATCTTTGTAAACCTC 57.533 45.455 0.00 0.00 0.00 3.85
4911 5345 5.045869 TCAATCCCTCGATCTTTGTAAACCT 60.046 40.000 0.00 0.00 0.00 3.50
4943 5390 6.621316 TCGATTAGATACAGAACCTCAGAC 57.379 41.667 0.00 0.00 0.00 3.51
4965 5412 8.488651 CCATATACGTTGGGGTTAGAATATTC 57.511 38.462 7.41 7.41 0.00 1.75
4983 5430 4.213513 CCTAGATCCCGGTACCCATATAC 58.786 52.174 6.25 0.00 0.00 1.47
4991 5438 3.515602 TCTAACCCTAGATCCCGGTAC 57.484 52.381 0.00 0.00 0.00 3.34
4996 5443 9.994017 AACTAGTATTATCTAACCCTAGATCCC 57.006 37.037 0.00 0.00 42.77 3.85
5016 5463 5.132144 CCCATATACCTTCCAACCAACTAGT 59.868 44.000 0.00 0.00 0.00 2.57
5022 5469 3.717913 GGTACCCATATACCTTCCAACCA 59.282 47.826 0.00 0.00 41.38 3.67
5030 5477 4.503685 ACATCCTGGTACCCATATACCT 57.496 45.455 10.07 0.00 44.43 3.08
5031 5478 4.715297 CCTACATCCTGGTACCCATATACC 59.285 50.000 10.07 0.00 44.39 2.73
5032 5479 4.715297 CCCTACATCCTGGTACCCATATAC 59.285 50.000 10.07 0.00 30.82 1.47
5033 5480 4.361982 ACCCTACATCCTGGTACCCATATA 59.638 45.833 10.07 0.00 30.82 0.86
5034 5481 3.146055 ACCCTACATCCTGGTACCCATAT 59.854 47.826 10.07 0.00 30.82 1.78
5035 5482 2.525310 ACCCTACATCCTGGTACCCATA 59.475 50.000 10.07 0.00 30.82 2.74
5036 5483 1.297141 ACCCTACATCCTGGTACCCAT 59.703 52.381 10.07 0.00 30.82 4.00
5037 5484 0.720232 ACCCTACATCCTGGTACCCA 59.280 55.000 10.07 0.00 0.00 4.51
5038 5485 1.889174 AACCCTACATCCTGGTACCC 58.111 55.000 10.07 0.00 0.00 3.69
5039 5486 3.377573 TGTAACCCTACATCCTGGTACC 58.622 50.000 4.43 4.43 32.93 3.34
5054 5501 2.624636 CTACGTTGGGGTGATGTAACC 58.375 52.381 0.00 0.00 39.71 2.85
5055 5502 2.027837 ACCTACGTTGGGGTGATGTAAC 60.028 50.000 20.21 0.00 34.16 2.50
5056 5503 2.234414 GACCTACGTTGGGGTGATGTAA 59.766 50.000 20.21 0.00 35.77 2.41
5057 5504 1.826720 GACCTACGTTGGGGTGATGTA 59.173 52.381 20.21 0.00 35.77 2.29
5058 5505 0.611714 GACCTACGTTGGGGTGATGT 59.388 55.000 20.21 0.00 35.77 3.06
5059 5506 0.459585 CGACCTACGTTGGGGTGATG 60.460 60.000 20.21 3.36 35.77 3.07
5060 5507 1.610554 CCGACCTACGTTGGGGTGAT 61.611 60.000 20.21 0.00 39.64 3.06
5061 5508 2.277591 CCGACCTACGTTGGGGTGA 61.278 63.158 20.21 0.00 39.64 4.02
5062 5509 2.263540 CCGACCTACGTTGGGGTG 59.736 66.667 20.21 8.90 39.64 4.61
5063 5510 2.203684 ACCGACCTACGTTGGGGT 60.204 61.111 20.21 14.94 46.80 4.95
5064 5511 2.575461 GACCGACCTACGTTGGGG 59.425 66.667 20.21 14.31 46.80 4.96
5065 5512 2.575461 GGACCGACCTACGTTGGG 59.425 66.667 20.21 12.73 46.80 4.12
5078 5525 3.959991 GAAGACCAGCGGCAGGACC 62.960 68.421 19.03 9.16 0.00 4.46
5079 5526 2.435059 GAAGACCAGCGGCAGGAC 60.435 66.667 19.03 12.15 0.00 3.85
5080 5527 2.172483 GAAGAAGACCAGCGGCAGGA 62.172 60.000 19.03 0.00 0.00 3.86
5081 5528 1.743252 GAAGAAGACCAGCGGCAGG 60.743 63.158 10.16 10.16 0.00 4.85
5082 5529 1.743252 GGAAGAAGACCAGCGGCAG 60.743 63.158 1.45 0.00 0.00 4.85
5083 5530 1.768684 AAGGAAGAAGACCAGCGGCA 61.769 55.000 1.45 0.00 0.00 5.69
5084 5531 1.003233 AAGGAAGAAGACCAGCGGC 60.003 57.895 0.00 0.00 0.00 6.53
5085 5532 0.674895 CCAAGGAAGAAGACCAGCGG 60.675 60.000 0.00 0.00 0.00 5.52
5086 5533 0.321671 TCCAAGGAAGAAGACCAGCG 59.678 55.000 0.00 0.00 0.00 5.18
5087 5534 1.625818 TCTCCAAGGAAGAAGACCAGC 59.374 52.381 0.00 0.00 0.00 4.85
5088 5535 3.517100 TCATCTCCAAGGAAGAAGACCAG 59.483 47.826 0.00 0.00 0.00 4.00
5089 5536 3.520696 TCATCTCCAAGGAAGAAGACCA 58.479 45.455 0.00 0.00 0.00 4.02
5090 5537 4.769345 ATCATCTCCAAGGAAGAAGACC 57.231 45.455 0.00 0.00 0.00 3.85
5091 5538 5.588246 GGAAATCATCTCCAAGGAAGAAGAC 59.412 44.000 0.00 0.00 32.77 3.01
5092 5539 5.490357 AGGAAATCATCTCCAAGGAAGAAGA 59.510 40.000 0.00 0.00 35.20 2.87
5093 5540 5.753716 AGGAAATCATCTCCAAGGAAGAAG 58.246 41.667 0.00 0.00 35.20 2.85
5094 5541 5.786121 AGGAAATCATCTCCAAGGAAGAA 57.214 39.130 0.00 0.00 35.20 2.52
5095 5542 5.503927 CAAGGAAATCATCTCCAAGGAAGA 58.496 41.667 0.00 0.00 35.20 2.87
5096 5543 4.643784 CCAAGGAAATCATCTCCAAGGAAG 59.356 45.833 0.00 0.00 35.20 3.46
5097 5544 4.044571 ACCAAGGAAATCATCTCCAAGGAA 59.955 41.667 0.00 0.00 35.20 3.36
5098 5545 3.593328 ACCAAGGAAATCATCTCCAAGGA 59.407 43.478 0.00 0.00 35.20 3.36
5099 5546 3.698040 CACCAAGGAAATCATCTCCAAGG 59.302 47.826 0.00 0.00 35.20 3.61
5100 5547 3.129988 GCACCAAGGAAATCATCTCCAAG 59.870 47.826 0.00 0.00 35.20 3.61
5101 5548 3.091545 GCACCAAGGAAATCATCTCCAA 58.908 45.455 0.00 0.00 35.20 3.53
5102 5549 2.041485 TGCACCAAGGAAATCATCTCCA 59.959 45.455 0.00 0.00 35.20 3.86
5103 5550 2.726821 TGCACCAAGGAAATCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
5104 5551 4.400251 TGATTGCACCAAGGAAATCATCTC 59.600 41.667 10.40 0.00 0.00 2.75
5105 5552 4.159135 GTGATTGCACCAAGGAAATCATCT 59.841 41.667 14.72 0.00 39.14 2.90
5106 5553 4.082081 TGTGATTGCACCAAGGAAATCATC 60.082 41.667 14.72 11.02 44.51 2.92
5107 5554 3.833650 TGTGATTGCACCAAGGAAATCAT 59.166 39.130 14.72 0.00 44.51 2.45
5108 5555 3.229293 TGTGATTGCACCAAGGAAATCA 58.771 40.909 10.40 10.40 44.51 2.57
5109 5556 3.940209 TGTGATTGCACCAAGGAAATC 57.060 42.857 0.00 0.67 44.51 2.17
5110 5557 4.101430 AGTTTGTGATTGCACCAAGGAAAT 59.899 37.500 0.00 0.00 44.51 2.17
5111 5558 3.450457 AGTTTGTGATTGCACCAAGGAAA 59.550 39.130 0.00 0.00 44.51 3.13
5112 5559 3.030291 AGTTTGTGATTGCACCAAGGAA 58.970 40.909 0.00 0.00 44.51 3.36
5113 5560 2.622942 GAGTTTGTGATTGCACCAAGGA 59.377 45.455 0.00 0.00 44.51 3.36
5114 5561 2.288395 GGAGTTTGTGATTGCACCAAGG 60.288 50.000 0.00 0.00 44.51 3.61
5115 5562 2.361757 TGGAGTTTGTGATTGCACCAAG 59.638 45.455 0.00 0.00 44.51 3.61
5116 5563 2.100584 GTGGAGTTTGTGATTGCACCAA 59.899 45.455 0.00 0.00 44.51 3.67
5117 5564 1.680735 GTGGAGTTTGTGATTGCACCA 59.319 47.619 0.00 0.00 44.51 4.17
5118 5565 1.680735 TGTGGAGTTTGTGATTGCACC 59.319 47.619 0.00 0.00 44.51 5.01
5119 5566 2.098934 TGTGTGGAGTTTGTGATTGCAC 59.901 45.455 0.00 0.00 45.35 4.57
5120 5567 2.373224 TGTGTGGAGTTTGTGATTGCA 58.627 42.857 0.00 0.00 0.00 4.08
5121 5568 3.648339 ATGTGTGGAGTTTGTGATTGC 57.352 42.857 0.00 0.00 0.00 3.56
5122 5569 8.592105 ATTTTTATGTGTGGAGTTTGTGATTG 57.408 30.769 0.00 0.00 0.00 2.67
5123 5570 9.691362 GTATTTTTATGTGTGGAGTTTGTGATT 57.309 29.630 0.00 0.00 0.00 2.57
5124 5571 8.020819 CGTATTTTTATGTGTGGAGTTTGTGAT 58.979 33.333 0.00 0.00 0.00 3.06
5125 5572 7.356540 CGTATTTTTATGTGTGGAGTTTGTGA 58.643 34.615 0.00 0.00 0.00 3.58
5126 5573 6.580791 CCGTATTTTTATGTGTGGAGTTTGTG 59.419 38.462 0.00 0.00 0.00 3.33
5127 5574 6.487331 TCCGTATTTTTATGTGTGGAGTTTGT 59.513 34.615 0.00 0.00 0.00 2.83
5128 5575 6.904498 TCCGTATTTTTATGTGTGGAGTTTG 58.096 36.000 0.00 0.00 0.00 2.93
5129 5576 7.696992 ATCCGTATTTTTATGTGTGGAGTTT 57.303 32.000 0.00 0.00 0.00 2.66
5130 5577 7.696992 AATCCGTATTTTTATGTGTGGAGTT 57.303 32.000 0.00 0.00 0.00 3.01
5131 5578 8.974060 ATAATCCGTATTTTTATGTGTGGAGT 57.026 30.769 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.