Multiple sequence alignment - TraesCS2A01G163500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G163500 chr2A 100.000 2952 0 0 1 2952 115733280 115736231 0.000000e+00 5452
1 TraesCS2A01G163500 chr2A 98.044 2863 25 2 90 2952 196049646 196046815 0.000000e+00 4948
2 TraesCS2A01G163500 chr2A 99.286 1540 11 0 1413 2952 465592371 465593910 0.000000e+00 2784
3 TraesCS2A01G163500 chr2A 99.052 1372 13 0 90 1461 465591108 465592479 0.000000e+00 2462
4 TraesCS2A01G163500 chr5B 99.267 2863 21 0 90 2952 652325151 652328013 0.000000e+00 5171
5 TraesCS2A01G163500 chr5B 96.970 99 2 1 4 101 120553749 120553651 6.550000e-37 165
6 TraesCS2A01G163500 chr5A 98.254 2863 20 1 90 2952 92668461 92671293 0.000000e+00 4983
7 TraesCS2A01G163500 chr3B 97.541 2318 29 18 640 2952 475591420 475589126 0.000000e+00 3940
8 TraesCS2A01G163500 chr3B 96.866 1372 43 0 90 1461 346701167 346702538 0.000000e+00 2296
9 TraesCS2A01G163500 chr3B 98.947 95 0 1 1 95 21518952 21518859 5.060000e-38 169
10 TraesCS2A01G163500 chr3B 98.947 95 0 1 1 95 81154740 81154647 5.060000e-38 169
11 TraesCS2A01G163500 chr1A 99.290 1550 9 2 1404 2952 50623416 50624964 0.000000e+00 2800
12 TraesCS2A01G163500 chr1A 92.920 113 5 3 1 110 440401180 440401292 8.470000e-36 161
13 TraesCS2A01G163500 chr1B 99.286 1540 11 0 1413 2952 239784434 239782895 0.000000e+00 2784
14 TraesCS2A01G163500 chr1B 99.156 1540 13 0 1413 2952 230595570 230594031 0.000000e+00 2772
15 TraesCS2A01G163500 chr7A 99.221 1540 12 0 1413 2952 210115752 210114213 0.000000e+00 2778
16 TraesCS2A01G163500 chr7A 99.198 1372 11 0 90 1461 327159183 327160554 0.000000e+00 2473
17 TraesCS2A01G163500 chr6B 98.839 1550 15 3 1404 2952 179767301 179768848 0.000000e+00 2760
18 TraesCS2A01G163500 chr2B 99.273 1375 10 0 90 1464 172273438 172274812 0.000000e+00 2484
19 TraesCS2A01G163500 chrUn 98.766 1378 16 1 90 1467 64800929 64799553 0.000000e+00 2449
20 TraesCS2A01G163500 chr4B 98.688 1372 17 1 90 1461 436123600 436124970 0.000000e+00 2433
21 TraesCS2A01G163500 chr4B 98.947 95 0 1 1 95 483708152 483708245 5.060000e-38 169
22 TraesCS2A01G163500 chr7B 87.527 1844 165 37 296 2116 562612808 562614609 0.000000e+00 2071
23 TraesCS2A01G163500 chr7B 96.117 103 2 2 1 101 67796690 67796588 1.820000e-37 167
24 TraesCS2A01G163500 chr7B 92.920 113 2 5 4 115 375428509 375428616 3.050000e-35 159
25 TraesCS2A01G163500 chr3A 98.947 95 0 1 1 95 212784036 212784129 5.060000e-38 169
26 TraesCS2A01G163500 chr4A 94.393 107 2 4 1 104 734131781 734131886 8.470000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G163500 chr2A 115733280 115736231 2951 False 5452 5452 100.000 1 2952 1 chr2A.!!$F1 2951
1 TraesCS2A01G163500 chr2A 196046815 196049646 2831 True 4948 4948 98.044 90 2952 1 chr2A.!!$R1 2862
2 TraesCS2A01G163500 chr2A 465591108 465593910 2802 False 2623 2784 99.169 90 2952 2 chr2A.!!$F2 2862
3 TraesCS2A01G163500 chr5B 652325151 652328013 2862 False 5171 5171 99.267 90 2952 1 chr5B.!!$F1 2862
4 TraesCS2A01G163500 chr5A 92668461 92671293 2832 False 4983 4983 98.254 90 2952 1 chr5A.!!$F1 2862
5 TraesCS2A01G163500 chr3B 475589126 475591420 2294 True 3940 3940 97.541 640 2952 1 chr3B.!!$R3 2312
6 TraesCS2A01G163500 chr3B 346701167 346702538 1371 False 2296 2296 96.866 90 1461 1 chr3B.!!$F1 1371
7 TraesCS2A01G163500 chr1A 50623416 50624964 1548 False 2800 2800 99.290 1404 2952 1 chr1A.!!$F1 1548
8 TraesCS2A01G163500 chr1B 239782895 239784434 1539 True 2784 2784 99.286 1413 2952 1 chr1B.!!$R2 1539
9 TraesCS2A01G163500 chr1B 230594031 230595570 1539 True 2772 2772 99.156 1413 2952 1 chr1B.!!$R1 1539
10 TraesCS2A01G163500 chr7A 210114213 210115752 1539 True 2778 2778 99.221 1413 2952 1 chr7A.!!$R1 1539
11 TraesCS2A01G163500 chr7A 327159183 327160554 1371 False 2473 2473 99.198 90 1461 1 chr7A.!!$F1 1371
12 TraesCS2A01G163500 chr6B 179767301 179768848 1547 False 2760 2760 98.839 1404 2952 1 chr6B.!!$F1 1548
13 TraesCS2A01G163500 chr2B 172273438 172274812 1374 False 2484 2484 99.273 90 1464 1 chr2B.!!$F1 1374
14 TraesCS2A01G163500 chrUn 64799553 64800929 1376 True 2449 2449 98.766 90 1467 1 chrUn.!!$R1 1377
15 TraesCS2A01G163500 chr4B 436123600 436124970 1370 False 2433 2433 98.688 90 1461 1 chr4B.!!$F1 1371
16 TraesCS2A01G163500 chr7B 562612808 562614609 1801 False 2071 2071 87.527 296 2116 1 chr7B.!!$F2 1820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.106708 TCCCCTCGTTGCTATGCATC 59.893 55.000 0.19 0.0 38.76 3.91 F
35 36 0.179048 CCCCTCGTTGCTATGCATCA 60.179 55.000 0.19 0.0 38.76 3.07 F
53 54 0.519792 CACATGATCTTGCGTGTGCG 60.520 55.000 8.45 0.0 45.48 5.34 F
1132 1134 1.676967 GGCAGGCCAAGGAAGACAG 60.677 63.158 5.01 0.0 35.81 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1511 0.392729 GCTGCACTGGAGCTTCATCT 60.393 55.000 14.89 0.00 33.37 2.90 R
1494 1649 0.745845 CATCCTGTGCACCTGTAGGC 60.746 60.000 15.69 0.00 39.32 3.93 R
1495 1650 3.465990 CATCCTGTGCACCTGTAGG 57.534 57.895 15.69 14.43 42.17 3.18 R
2416 2609 4.080638 ACCACCTGGAGAAGAGATCAATTC 60.081 45.833 0.00 0.00 38.94 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.145807 ACATAGACAATACTCTCCCCTCG 58.854 47.826 0.00 0.00 0.00 4.63
23 24 2.830651 AGACAATACTCTCCCCTCGT 57.169 50.000 0.00 0.00 0.00 4.18
24 25 3.103080 AGACAATACTCTCCCCTCGTT 57.897 47.619 0.00 0.00 0.00 3.85
25 26 2.761208 AGACAATACTCTCCCCTCGTTG 59.239 50.000 0.00 0.00 0.00 4.10
26 27 1.207329 ACAATACTCTCCCCTCGTTGC 59.793 52.381 0.00 0.00 0.00 4.17
27 28 1.482593 CAATACTCTCCCCTCGTTGCT 59.517 52.381 0.00 0.00 0.00 3.91
28 29 2.693591 CAATACTCTCCCCTCGTTGCTA 59.306 50.000 0.00 0.00 0.00 3.49
29 30 2.750141 TACTCTCCCCTCGTTGCTAT 57.250 50.000 0.00 0.00 0.00 2.97
30 31 1.115467 ACTCTCCCCTCGTTGCTATG 58.885 55.000 0.00 0.00 0.00 2.23
31 32 0.249657 CTCTCCCCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
32 33 0.975556 TCTCCCCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
33 34 0.107456 CTCCCCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
34 35 0.106708 TCCCCTCGTTGCTATGCATC 59.893 55.000 0.19 0.00 38.76 3.91
35 36 0.179048 CCCCTCGTTGCTATGCATCA 60.179 55.000 0.19 0.00 38.76 3.07
36 37 0.940126 CCCTCGTTGCTATGCATCAC 59.060 55.000 0.19 0.00 38.76 3.06
37 38 1.655484 CCTCGTTGCTATGCATCACA 58.345 50.000 0.19 0.00 38.76 3.58
38 39 2.216046 CCTCGTTGCTATGCATCACAT 58.784 47.619 0.19 0.00 43.18 3.21
39 40 2.032290 CCTCGTTGCTATGCATCACATG 60.032 50.000 0.19 0.00 40.06 3.21
40 41 2.867975 CTCGTTGCTATGCATCACATGA 59.132 45.455 0.19 3.61 40.06 3.07
41 42 3.469739 TCGTTGCTATGCATCACATGAT 58.530 40.909 0.19 0.00 40.06 2.45
42 43 3.495753 TCGTTGCTATGCATCACATGATC 59.504 43.478 0.19 0.00 40.06 2.92
43 44 3.497262 CGTTGCTATGCATCACATGATCT 59.503 43.478 0.19 0.00 40.06 2.75
44 45 4.024302 CGTTGCTATGCATCACATGATCTT 60.024 41.667 0.19 0.00 40.06 2.40
45 46 5.212934 GTTGCTATGCATCACATGATCTTG 58.787 41.667 0.19 7.04 40.06 3.02
46 47 3.252458 TGCTATGCATCACATGATCTTGC 59.748 43.478 0.19 3.75 40.06 4.01
47 48 3.667166 GCTATGCATCACATGATCTTGCG 60.667 47.826 0.19 0.00 40.06 4.85
48 49 1.741528 TGCATCACATGATCTTGCGT 58.258 45.000 8.45 0.00 31.21 5.24
49 50 1.399089 TGCATCACATGATCTTGCGTG 59.601 47.619 8.45 6.37 31.21 5.34
50 51 1.399440 GCATCACATGATCTTGCGTGT 59.601 47.619 8.45 0.00 38.49 4.49
52 53 3.301352 CACATGATCTTGCGTGTGC 57.699 52.632 8.45 0.00 45.48 4.57
53 54 0.519792 CACATGATCTTGCGTGTGCG 60.520 55.000 8.45 0.00 45.48 5.34
54 55 3.114044 CACATGATCTTGCGTGTGCGT 62.114 52.381 8.45 0.00 45.48 5.24
55 56 3.802605 CACATGATCTTGCGTGTGCGTA 61.803 50.000 8.45 0.00 45.48 4.42
56 57 5.579186 CACATGATCTTGCGTGTGCGTAG 62.579 52.174 8.45 0.00 45.48 3.51
64 65 2.325509 GCGTGTGCGTAGGAAATTTT 57.674 45.000 0.00 0.00 40.81 1.82
65 66 2.657184 GCGTGTGCGTAGGAAATTTTT 58.343 42.857 0.00 0.00 40.81 1.94
87 88 8.631676 TTTTTGAAATTACTACGAAACCCAAC 57.368 30.769 0.00 0.00 0.00 3.77
88 89 6.939132 TTGAAATTACTACGAAACCCAACA 57.061 33.333 0.00 0.00 0.00 3.33
1132 1134 1.676967 GGCAGGCCAAGGAAGACAG 60.677 63.158 5.01 0.00 35.81 3.51
1312 1314 3.161866 GACCCTCCTAACCAAAATGCAA 58.838 45.455 0.00 0.00 0.00 4.08
1318 1320 5.245075 CCTCCTAACCAAAATGCAAACCTAA 59.755 40.000 0.00 0.00 0.00 2.69
1407 1502 1.849975 ATGAAGCTCCAGTGCAGCCT 61.850 55.000 1.34 0.00 37.63 4.58
1408 1503 2.033757 AAGCTCCAGTGCAGCCTG 59.966 61.111 1.34 0.00 37.63 4.85
1409 1504 4.719106 AGCTCCAGTGCAGCCTGC 62.719 66.667 10.45 10.45 45.29 4.85
1494 1649 1.300481 CAGATGATGCTCCAGTGCAG 58.700 55.000 0.00 0.00 46.71 4.41
1497 1652 2.271497 GATGCTCCAGTGCAGCCT 59.729 61.111 2.96 0.00 46.71 4.58
1498 1653 1.524002 GATGCTCCAGTGCAGCCTA 59.476 57.895 2.96 0.00 46.71 3.93
1499 1654 0.813210 GATGCTCCAGTGCAGCCTAC 60.813 60.000 2.96 0.00 46.71 3.18
1500 1655 1.556373 ATGCTCCAGTGCAGCCTACA 61.556 55.000 2.96 0.00 46.71 2.74
1501 1656 1.449246 GCTCCAGTGCAGCCTACAG 60.449 63.158 0.00 0.00 0.00 2.74
1502 1657 1.220206 CTCCAGTGCAGCCTACAGG 59.780 63.158 0.00 0.00 38.53 4.00
1503 1658 1.536418 TCCAGTGCAGCCTACAGGT 60.536 57.895 0.00 0.00 37.57 4.00
1509 1664 4.291047 CAGCCTACAGGTGCACAG 57.709 61.111 20.43 13.07 37.12 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.145807 CGAGGGGAGAGTATTGTCTATGT 58.854 47.826 0.00 0.00 0.00 2.29
1 2 4.145807 ACGAGGGGAGAGTATTGTCTATG 58.854 47.826 0.00 0.00 0.00 2.23
2 3 4.456662 ACGAGGGGAGAGTATTGTCTAT 57.543 45.455 0.00 0.00 0.00 1.98
3 4 3.947612 ACGAGGGGAGAGTATTGTCTA 57.052 47.619 0.00 0.00 0.00 2.59
4 5 2.761208 CAACGAGGGGAGAGTATTGTCT 59.239 50.000 0.00 0.00 0.00 3.41
5 6 2.738964 GCAACGAGGGGAGAGTATTGTC 60.739 54.545 0.00 0.00 0.00 3.18
6 7 1.207329 GCAACGAGGGGAGAGTATTGT 59.793 52.381 0.00 0.00 0.00 2.71
7 8 1.482593 AGCAACGAGGGGAGAGTATTG 59.517 52.381 0.00 0.00 0.00 1.90
8 9 1.867363 AGCAACGAGGGGAGAGTATT 58.133 50.000 0.00 0.00 0.00 1.89
9 10 2.750141 TAGCAACGAGGGGAGAGTAT 57.250 50.000 0.00 0.00 0.00 2.12
10 11 2.307768 CATAGCAACGAGGGGAGAGTA 58.692 52.381 0.00 0.00 0.00 2.59
11 12 1.115467 CATAGCAACGAGGGGAGAGT 58.885 55.000 0.00 0.00 0.00 3.24
12 13 0.249657 GCATAGCAACGAGGGGAGAG 60.250 60.000 0.00 0.00 0.00 3.20
13 14 0.975556 TGCATAGCAACGAGGGGAGA 60.976 55.000 0.00 0.00 34.76 3.71
14 15 0.107456 ATGCATAGCAACGAGGGGAG 59.893 55.000 0.00 0.00 43.62 4.30
15 16 0.106708 GATGCATAGCAACGAGGGGA 59.893 55.000 0.00 0.00 43.62 4.81
16 17 0.179048 TGATGCATAGCAACGAGGGG 60.179 55.000 0.00 0.00 43.62 4.79
17 18 0.940126 GTGATGCATAGCAACGAGGG 59.060 55.000 0.00 0.00 43.62 4.30
18 19 1.655484 TGTGATGCATAGCAACGAGG 58.345 50.000 0.00 0.00 43.62 4.63
19 20 2.867975 TCATGTGATGCATAGCAACGAG 59.132 45.455 0.00 0.00 43.62 4.18
20 21 2.903798 TCATGTGATGCATAGCAACGA 58.096 42.857 0.00 0.66 43.62 3.85
21 22 3.497262 AGATCATGTGATGCATAGCAACG 59.503 43.478 0.00 0.00 43.62 4.10
22 23 5.212934 CAAGATCATGTGATGCATAGCAAC 58.787 41.667 0.00 0.00 43.62 4.17
23 24 4.261447 GCAAGATCATGTGATGCATAGCAA 60.261 41.667 0.00 0.00 43.62 3.91
24 25 3.252458 GCAAGATCATGTGATGCATAGCA 59.748 43.478 0.00 1.62 44.86 3.49
25 26 3.667166 CGCAAGATCATGTGATGCATAGC 60.667 47.826 5.58 0.00 43.02 2.97
26 27 3.497262 ACGCAAGATCATGTGATGCATAG 59.503 43.478 17.70 0.00 43.62 2.23
27 28 3.249080 CACGCAAGATCATGTGATGCATA 59.751 43.478 17.70 0.00 43.62 3.14
28 29 2.032924 CACGCAAGATCATGTGATGCAT 59.967 45.455 17.70 0.00 43.62 3.96
29 30 1.399089 CACGCAAGATCATGTGATGCA 59.601 47.619 17.70 0.00 43.62 3.96
30 31 1.399440 ACACGCAAGATCATGTGATGC 59.601 47.619 17.70 6.12 43.62 3.91
31 32 2.790123 GCACACGCAAGATCATGTGATG 60.790 50.000 17.70 14.83 41.52 3.07
32 33 1.399440 GCACACGCAAGATCATGTGAT 59.601 47.619 17.70 3.24 41.52 3.06
33 34 0.798159 GCACACGCAAGATCATGTGA 59.202 50.000 17.70 0.00 41.52 3.58
34 35 0.519792 CGCACACGCAAGATCATGTG 60.520 55.000 9.82 9.82 41.80 3.21
35 36 0.950555 ACGCACACGCAAGATCATGT 60.951 50.000 0.00 0.00 45.53 3.21
36 37 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
37 38 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
38 39 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
39 40 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
40 41 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
41 42 0.249531 TTTCCTACGCACACGCAAGA 60.250 50.000 0.00 0.00 45.53 3.02
42 43 0.796312 ATTTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
43 44 1.231221 AATTTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
44 45 1.231221 AAATTTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
45 46 2.325509 AAAATTTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
62 63 8.248945 TGTTGGGTTTCGTAGTAATTTCAAAAA 58.751 29.630 0.00 0.00 0.00 1.94
63 64 7.769220 TGTTGGGTTTCGTAGTAATTTCAAAA 58.231 30.769 0.00 0.00 0.00 2.44
64 65 7.067251 ACTGTTGGGTTTCGTAGTAATTTCAAA 59.933 33.333 0.00 0.00 0.00 2.69
65 66 6.543100 ACTGTTGGGTTTCGTAGTAATTTCAA 59.457 34.615 0.00 0.00 0.00 2.69
66 67 6.056884 ACTGTTGGGTTTCGTAGTAATTTCA 58.943 36.000 0.00 0.00 0.00 2.69
67 68 6.549912 ACTGTTGGGTTTCGTAGTAATTTC 57.450 37.500 0.00 0.00 0.00 2.17
68 69 6.652062 CCTACTGTTGGGTTTCGTAGTAATTT 59.348 38.462 0.00 0.00 0.00 1.82
69 70 6.168389 CCTACTGTTGGGTTTCGTAGTAATT 58.832 40.000 0.00 0.00 0.00 1.40
70 71 5.727434 CCTACTGTTGGGTTTCGTAGTAAT 58.273 41.667 0.00 0.00 0.00 1.89
71 72 4.561326 GCCTACTGTTGGGTTTCGTAGTAA 60.561 45.833 10.23 0.00 0.00 2.24
72 73 3.056607 GCCTACTGTTGGGTTTCGTAGTA 60.057 47.826 10.23 0.00 0.00 1.82
73 74 2.289257 GCCTACTGTTGGGTTTCGTAGT 60.289 50.000 10.23 0.00 0.00 2.73
74 75 2.344025 GCCTACTGTTGGGTTTCGTAG 58.656 52.381 10.23 0.00 0.00 3.51
75 76 1.002315 GGCCTACTGTTGGGTTTCGTA 59.998 52.381 10.23 0.00 0.00 3.43
76 77 0.250597 GGCCTACTGTTGGGTTTCGT 60.251 55.000 10.23 0.00 0.00 3.85
77 78 0.958876 GGGCCTACTGTTGGGTTTCG 60.959 60.000 0.84 0.00 0.00 3.46
78 79 0.404426 AGGGCCTACTGTTGGGTTTC 59.596 55.000 2.82 0.00 0.00 2.78
79 80 1.353358 GTAGGGCCTACTGTTGGGTTT 59.647 52.381 31.89 0.00 34.45 3.27
80 81 0.989602 GTAGGGCCTACTGTTGGGTT 59.010 55.000 31.89 0.00 34.45 4.11
81 82 0.912968 GGTAGGGCCTACTGTTGGGT 60.913 60.000 35.72 1.59 37.16 4.51
82 83 1.912971 GGTAGGGCCTACTGTTGGG 59.087 63.158 35.72 3.10 37.16 4.12
1132 1134 3.119352 CCTTCACTTGCTGGCTTAATTCC 60.119 47.826 0.00 0.00 0.00 3.01
1318 1320 8.924511 TCCTCTTCTTCTTGTTGTTTATCATT 57.075 30.769 0.00 0.00 0.00 2.57
1407 1502 1.339438 GGAGCTTCATCTTCACCTGCA 60.339 52.381 0.00 0.00 0.00 4.41
1408 1503 1.339438 TGGAGCTTCATCTTCACCTGC 60.339 52.381 0.00 0.00 0.00 4.85
1409 1504 2.027377 ACTGGAGCTTCATCTTCACCTG 60.027 50.000 0.00 0.00 0.00 4.00
1410 1505 2.027377 CACTGGAGCTTCATCTTCACCT 60.027 50.000 0.00 0.00 0.00 4.00
1411 1506 2.354259 CACTGGAGCTTCATCTTCACC 58.646 52.381 0.00 0.00 0.00 4.02
1412 1507 1.736681 GCACTGGAGCTTCATCTTCAC 59.263 52.381 0.00 0.00 0.00 3.18
1413 1508 1.348696 TGCACTGGAGCTTCATCTTCA 59.651 47.619 0.00 0.00 34.99 3.02
1414 1509 2.008329 CTGCACTGGAGCTTCATCTTC 58.992 52.381 0.00 0.00 34.99 2.87
1415 1510 1.949547 GCTGCACTGGAGCTTCATCTT 60.950 52.381 14.89 0.00 33.37 2.40
1416 1511 0.392729 GCTGCACTGGAGCTTCATCT 60.393 55.000 14.89 0.00 33.37 2.90
1494 1649 0.745845 CATCCTGTGCACCTGTAGGC 60.746 60.000 15.69 0.00 39.32 3.93
1495 1650 3.465990 CATCCTGTGCACCTGTAGG 57.534 57.895 15.69 14.43 42.17 3.18
2416 2609 4.080638 ACCACCTGGAGAAGAGATCAATTC 60.081 45.833 0.00 0.00 38.94 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.